Title: Truncated Positive Normal Model and Extensions
Description: Provide data generation and estimation tools for the truncated positive normal (tpn)
model discussed in Gomez, Olmos, Varela and Bolfarine (2018)
<doi:10.1007/s11766-018-3354-x>, the slash tpn distribution discussed in Gomez,
Gallardo and Santoro (2021) <doi:10.3390/sym13112164>, the bimodal tpn distribution
discussed in Gomez et al. (2022) <doi:10.3390/sym14040665> and the flexible tpn model.
Author: Diego Gallardo [aut, cre],
Hector J. Gomez [aut],
Yolanda M. Gomez [aut]
Maintainer: Diego Gallardo <dgallardo@ubiobio.cl>
Diff between tpn versions 1.9 dated 2024-11-17 and 1.10 dated 2025-04-04
DESCRIPTION | 8 ++-- MD5 | 8 ++-- NEWS.md | 5 ++ R/est.tpt.R | 100 +++++++++++++++++++++++++++++++++++++++++++++------------ man/est.tpt.Rd | 8 +++- 5 files changed, 99 insertions(+), 30 deletions(-)
Title: Working with Healthcare Databases
Description: A system for identifying diseases or events from healthcare databases and
preparing data for epidemiological studies. It includes capabilities not
supported by 'SQL', such as matching strings by 'stringr' style regular
expressions, and can compute comorbidity scores (Quan et al. (2005)
<doi:10.1097/01.mlr.0000182534.19832.83>) directly on a database server. The
implementation is based on 'dbplyr' with full 'tidyverse' compatibility.
Author: Kevin Hu [aut, cre, cph]
Maintainer: Kevin Hu <kevin.hu@bccdc.ca>
Diff between healthdb versions 0.4.0 dated 2025-02-27 and 0.4.1 dated 2025-04-04
DESCRIPTION | 6 +- MD5 | 22 ++++---- NEWS.md | 6 ++ R/collapse_episode_sql.R | 1 R/compute_comorbidity.R | 4 + R/db_helpers.R | 10 +++ R/exclude.R | 4 + R/fetch_var.R | 3 + R/identify_rows_sql.R | 2 R/restrict_dates_sql.R | 2 R/restrict_n_sql.R | 2 inst/doc/healthdb.html | 118 +++++++++++++++++++++++------------------------ 12 files changed, 107 insertions(+), 73 deletions(-)
Title: FaaS (Function as a Service) Package
Description: Allows users to create and deploy the workflow with multiple functions
in Function-as-a-Service (FaaS) cloud computing platforms.
The 'FaaSr' package makes it simpler for R developers to use FaaS platforms by providing the following functionality:
1) Parsing and validating a JSON-based payload compliant to 'FaaSr' schema supporting multiple FaaS platforms
2) Invoking user functions written in R in a Docker container (derived from rocker), using a list generated from
the parser as argument
3) Downloading/uploading of files from/to S3 buckets using simple primitives
4) Logging to files in S3 buckets
5) Triggering downstream actions supporting multiple FaaS platforms
6) Generating FaaS-specific API calls to simplify the registering of a user's workflow with a FaaS platform
Supported FaaS platforms:
Apache OpenWhisk <https://openwhisk.apache.org/>
GitHub Actions <https://github.com/features/actions>
Amazon Web Services (AWS) Lambda <https://aws.amazon.com/lambda/>
Support [...truncated...]
Author: Figueiredo Renato [aut, cre, ths, cph]
,
Park Sungjae [aut] ,
Mu Nan [ctb],
Ku Yun-Jung [ctb],
Daneshmand Vahid [ctb],
Thomas R. Quinn [aut],
Carey Cayelan [ctb]
Maintainer: Figueiredo Renato <renato.figueiredo@oregonstate.edu>
Diff between FaaSr versions 1.4.3 dated 2024-12-19 and 1.4.4 dated 2025-04-04
DESCRIPTION | 6 - MD5 | 26 +++---- NEWS.md | 6 + R/faasr_arrow_s3_bucket.R | 19 ++++- R/faasr_check_workflow_cycle.R | 136 +++++++++++++++++++++-------------------- R/faasr_delete_file.R | 19 ++++- R/faasr_get_file.R | 19 ++++- R/faasr_get_folder_list.R | 19 ++++- R/faasr_put_file.R | 18 ++++- man/faasr_arrow_s3_bucket.Rd | 2 man/faasr_delete_file.Rd | 2 man/faasr_get_file.Rd | 2 man/faasr_get_folder_list.Rd | 2 man/faasr_put_file.Rd | 2 14 files changed, 182 insertions(+), 96 deletions(-)
Title: High Performance Remote File System, Database and 'Geospatial'
Access Using 'duckdb'
Description: Provides friendly wrappers for creating 'duckdb'-backed connections
to tabular datasets ('csv', parquet, etc) on local or remote file systems.
This mimics the behaviour of "open_dataset" in the 'arrow' package,
but in addition to 'S3' file system also generalizes to any list of 'http' URLs.
Author: Carl Boettiger [aut, cre] ,
Michael D. Sumner [ctb]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between duckdbfs versions 0.0.9 dated 2024-12-16 and 0.1.0 dated 2025-04-04
DESCRIPTION | 7 +++--- MD5 | 28 +++++++++++++++++-------- NAMESPACE | 4 +++ NEWS.md | 6 +++++ R/cached_connection.R | 14 +++++++++++- R/duckdb_secrets.R |only R/h3.R |only R/parse_uri.R | 12 +++++++++-- R/to_json.R |only R/write_dataset.R | 23 +++++++++++++++++++++ inst/WORDLIST | 7 +++++- man/cached_connection.Rd | 6 ++++- man/duckdb_secrets.Rd |only man/load_h3.Rd |only man/to_h3j.Rd |only man/to_json.Rd |only man/write_geo.Rd |only tests/testthat/test-h3.R |only tests/testthat/test-secrets.R |only tests/testthat/test-write_dataset.R | 39 +++++++++++++++++++++++++++--------- 20 files changed, 119 insertions(+), 27 deletions(-)
Title: Stationarity Test Based on Unsystematic Sub-Sampling
Description: Performs a test for second-order stationarity of time series based
on unsystematic sub-samples.
Author: Haeran Cho [aut, cre]
Maintainer: Haeran Cho <haeran.cho@bristol.ac.uk>
Diff between unsystation versions 0.2.0 dated 2018-05-23 and 0.2.1 dated 2025-04-04
unsystation-0.2.0/unsystation/man/unsystation-package.Rd |only unsystation-0.2.1/unsystation/DESCRIPTION | 10 +++++----- unsystation-0.2.1/unsystation/MD5 | 9 ++++----- unsystation-0.2.1/unsystation/R/stat_code.R | 2 +- unsystation-0.2.1/unsystation/man/unsys.station.test.Rd | 15 ++++++++++++--- unsystation-0.2.1/unsystation/src/RcppExports.cpp | 5 +++++ 6 files changed, 27 insertions(+), 14 deletions(-)
Title: Functions to Analyze Single System Data
Description: Functions to visually and statistically analyze single system data.
Author: Charles Auerbach [aut, cre],
Wendy Zeitlin [aut]
Maintainer: Charles Auerbach <auerbach@yu.edu>
Diff between SSDforR versions 1.5.39 dated 2025-03-25 and 1.5.40 dated 2025-04-04
DESCRIPTION | 8 +++---- MD5 | 60 ++++++++++++++++++++++++++++--------------------------- R/ABiqr.R | 12 +++++------ R/ABstat.R | 6 +++-- R/GABrf2.R | 43 +++++++++++++++++++++++++++++++++------ R/IQRbandgraph.R | 16 +++++++++----- R/IQRline.R | 35 +++++++++++++++++++++++++++----- R/RSIQRline.R |only R/RSTrimline.R | 7 ++++-- R/RSstat.R | 6 ++++- R/Rchart.R | 9 +++++--- R/Rchartsd.R | 18 ++++++++++------ R/SD1.R | 14 ++++++------ R/SD2.R | 13 ++++++----- R/Trimline.R | 24 ++++++++++++++++++---- R/XRchart.R | 24 +++++++++++++--------- R/Xmrchart.R | 14 +++++++----- R/meanabove.R | 10 ++++++++- R/meanbelow.R | 16 ++++++++++++-- R/medabove.R | 10 +++++++-- R/medbelow.R | 9 ++++++-- R/metareg.R | 4 ++- R/metaregi.R | 2 + R/regabove.R | 8 ++++++- R/regbelow.R | 9 +++++++- R/robregabove.R | 7 +++++- R/robregbelow.R | 8 ++++++- R/sd1bandgraph.R | 22 +++++++++++--------- R/sd2bandgraph.R | 19 ++++++++++------- R/trimabove.R | 23 +++++++++++++++++++-- R/trimbelow.R | 22 ++++++++++++++++++-- man/RSIQRline.Rd |only 32 files changed, 342 insertions(+), 136 deletions(-)
Title: Read/Write, Analyze, and Visualize 'BIOM' Data
Description: A toolkit for working with Biological Observation Matrix ('BIOM') files.
Read/write all 'BIOM' formats. Compute rarefaction, alpha diversity, and
beta diversity (including 'UniFrac'). Summarize counts by taxonomic level.
Subset based on metadata. Generate visualizations and statistical analyses.
CPU intensive operations are coded in C for speed.
Author: Daniel P. Smith [aut, cre] ,
Alkek Center for Metagenomics and Microbiome Research [cph, fnd]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between rbiom versions 2.1.2 dated 2025-03-18 and 2.2.0 dated 2025-04-04
DESCRIPTION | 8 +-- MD5 | 40 +++++++-------- NAMESPACE | 2 R/bdiv_ord_plot.r | 38 ++++++++++----- R/boxplot_build.r | 16 ++++-- R/boxplot_stats.r | 4 + R/corrplot_build.r | 3 - R/corrplot_stats.r | 8 +-- R/geom_dendro.r | 8 +-- R/plot_build.r | 43 +++++++++++------ R/plot_heatmap.r | 94 +++++++++++++++++++++++++------------ R/plot_layers.r | 98 +++++++++++++++++++-------------------- R/provenance.r | 95 ++++++++++--------------------------- R/rare_stacked.r | 17 +++++- R/read_biom.r | 10 +++ R/stats_emmeans.r | 8 +-- R/taxa_stacked.r | 27 +++++++--- R/utils.r | 54 ++++++++++++--------- R/write_biom.r | 11 ++++ R/zzz.r | 87 +++------------------------------- tests/testthat/test-provenance.r | 12 ---- 21 files changed, 341 insertions(+), 342 deletions(-)
Title: Projection Pursuit
Description: Projection pursuit (PP) with 17 methods and grand tour with 3 methods. Being that projection pursuit searches for low-dimensional linear projections in high-dimensional data structures, while grand tour is a technique used to explore multivariate statistical data through animation.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between Pursuit versions 1.0.5 dated 2024-06-21 and 1.0.6 dated 2025-04-04
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/Plot.PP_English.R | 17 +++++++++-------- man/Pursuit-package.Rd | 4 ++-- 4 files changed, 19 insertions(+), 18 deletions(-)
Title: High-Level Plotting Built Upon 'ggplot2' and Other Plotting
Packages
Description: Provides high-level API and a wide range of options to create stunning, publication-quality plots effortlessly.
It is built upon 'ggplot2' and other plotting packages, and is designed to be easy to use and to work seamlessly with 'ggplot2' objects.
It is particularly useful for creating complex plots with multiple layers, facets, and annotations.
It also provides a set of functions to create plots for specific types of data, such as Venn diagrams, alluvial diagrams, and phylogenetic trees.
The package is designed to be flexible and customizable, and to work well with the 'ggplot2' ecosystem.
The API can be found at <https://pwwang.github.io/plotthis/reference/index.html>.
Author: Panwen Wang [aut, cre]
Maintainer: Panwen Wang <pwwang@pwwang.com>
Diff between plotthis versions 0.5.2 dated 2025-03-16 and 0.6.0 dated 2025-04-04
DESCRIPTION | 10 +-- MD5 | 137 +++++++++++++++++++++--------------------- NAMESPACE | 2 R/areaplot.R | 16 +++- R/barplot.R | 137 +++++++++++++++++++++++++++++++++--------- R/boxviolinplot.R | 22 ++++-- R/chordplot.R | 6 + R/clustreeplot.R | 11 ++- R/common_args.R | 21 ++++++ R/corplot.R | 22 ++++-- R/densityplot.R | 30 ++++++--- R/dimplot.R | 20 ++++-- R/dotplot.R | 20 ++++-- R/enrich.R | 20 ++++-- R/gsea.R | 6 + R/heatmap.R | 35 ++++++++-- R/lineplot.R | 10 ++- R/manhattanplot.R |only R/network.R | 6 + R/piechart.R | 10 ++- R/qqplot.R | 8 +- R/radarplot.R | 20 ++++-- R/rarefractionplot.R | 10 ++- R/ringplot.R | 9 +- R/roccurve.R | 13 ++- R/sankeyplot.R | 6 + R/scatterplot.R | 10 ++- R/theming.R | 6 + R/trendplot.R | 12 ++- R/upsetplot.R | 11 ++- R/utils.R | 68 +++++++++++++++++++- R/venndiagram.R | 10 ++- R/volcanoplot.R | 10 ++- R/wordcloudplot.R | 11 ++- README.md | 5 + man/AreaPlot.Rd | 41 ++++++++++++ man/BarPlotGrouped.Rd | 19 +++++ man/BoxViolinPlot-internal.Rd | 35 ++++++++++ man/ClustreePlot.Rd | 35 ++++++++++ man/CorPairsPlot.Rd | 35 ++++++++++ man/CorPlot.Rd | 35 ++++++++++ man/Heatmap.Rd | 39 +++++++++++ man/LinePlot.Rd | 35 ++++++++++ man/ManhattanPlot.Rd |only man/ManhattanPlotAtomic.Rd |only man/Network.Rd | 35 ++++++++++ man/PieChart.Rd | 35 ++++++++++ man/QQPlot.Rd | 35 ++++++++++ man/ROCCurve.Rd | 35 ++++++++++ man/RarefactionPlot.Rd | 35 ++++++++++ man/RidgePlot.Rd | 35 ++++++++++ man/RingPlot.Rd | 35 ++++++++++ man/ScatterPlot.Rd | 35 ++++++++++ man/TrendPlot.Rd | 35 ++++++++++ man/VolcanoPlot.Rd | 35 ++++++++++ man/WordCloudPlot.Rd | 35 ++++++++++ man/barplot.Rd | 49 +++++++++++++++ man/boxviolinplot.Rd | 33 ++++++++++ man/check_legend.Rd |only man/chordplot.Rd | 39 +++++++++++ man/combine_plots.Rd | 13 +++ man/common_args.Rd | 31 +++++++++ man/densityhistoplot.Rd | 39 +++++++++++ man/dimplot.Rd | 39 +++++++++++ man/dotplot.Rd | 39 +++++++++++ man/enrichmap1.Rd | 39 +++++++++++ man/figures/manh.png |only man/gsea.Rd | 35 ++++++++++ man/radarplot.Rd | 39 +++++++++++ man/sankeyplot.Rd | 39 +++++++++++ man/upsetplot1.Rd | 35 ++++++++++ man/venndiagram1.Rd | 35 ++++++++++ 72 files changed, 1698 insertions(+), 215 deletions(-)
Title: Analise multivariada (brazilian portuguese)
Description: Analise multivariada, tendo funcoes que executam analise de correspondencia simples (CA) e multipla (MCA), analise de componentes principais (PCA), analise de correlacao canonica (CCA), analise fatorial (FA), escalonamento multidimensional (MDS), analise discriminante linear (LDA) e quadratica (QDA), analise de cluster hierarquico e nao hierarquico, regressao linear simples e multipla, analise de multiplos fatores (MFA) para dados quantitativos, qualitativos, de frequencia (MFACT) e dados mistos, biplot, scatter plot, projection pursuit (PP), grant tour e outras funcoes uteis para a analise multivariada.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar.pt versions 2.2.5 dated 2024-11-22 and 2.2.6 dated 2025-04-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/Plot.PP.R | 11 ++++++----- man/MVar.pt-package.Rd | 4 ++-- 4 files changed, 15 insertions(+), 14 deletions(-)
Title: Multivariate Analysis
Description: Multivariate analysis, having functions that perform simple correspondence analysis (CA) and multiple correspondence analysis (MCA), principal components analysis (PCA), canonical correlation analysis (CCA), factorial analysis (FA), multidimensional scaling (MDS), linear (LDA) and quadratic discriminant analysis (QDA), hierarchical and non-hierarchical cluster analysis, simple and multiple linear regression, multiple factor analysis (MFA) for quantitative, qualitative, frequency (MFACT) and mixed data, biplot, scatter plot, projection pursuit (PP), grant tour method and other useful functions for the multivariate analysis.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MVar versions 2.2.5 dated 2024-11-22 and 2.2.6 dated 2025-04-04
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/Plot.PP_English.R | 11 ++++++----- man/MVar-package.Rd | 4 ++-- 4 files changed, 15 insertions(+), 14 deletions(-)
Title: Multiple Factor Analysis (MFA)
Description: Performs Multiple Factor Analysis method for quantitative, categorical, frequency and mixed data, in addition to generating a lot of graphics, also has other useful functions.
Author: Paulo Cesar Ossani [aut, cre] ,
Marcelo Angelo Cirillo [aut]
Maintainer: Paulo Cesar Ossani <ossanipc@hotmail.com>
Diff between MFAg versions 2.0 dated 2024-06-21 and 2.1 dated 2025-04-04
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- man/MFAg-package.Rd | 4 ++-- 3 files changed, 8 insertions(+), 8 deletions(-)
Title: Process Analysis for Exponential Random Graph Models
Description: Calculates marginal effects and conducts process analysis in exponential family random graph models (ERGM).
Includes functions to conduct mediation and moderation analyses and to diagnose
multicollinearity.
URL: <https://github.com/sduxbury/ergMargins>.
BugReports: <https://github.com/sduxbury/ergMargins/issues>.
Duxbury, Scott W (2021) <doi:10.1177/0049124120986178>.
Long, J. Scott, and Sarah Mustillo (2018) <doi:10.1177/0049124118799374>.
Mize, Trenton D. (2019) <doi:10.15195/v6.a4>.
Karlson, Kristian Bernt, Anders Holm, and Richard Breen (2012) <doi:10.1177/0081175012444861>.
Duxbury, Scott W (2018) <doi:10.1177/0049124118782543>.
Duxbury, Scott W, Jenna Wertsching (2023) <doi:10.1016/j.socnet.2023.02.003>.
Huang, Peng, Carter Butts (2023) <doi:10.1016/j.socnet.2023.07.001>.
Author: Scott Duxbury [aut, cre, cph]
Maintainer: Scott Duxbury <duxbury@email.unc.edu>
Diff between ergMargins versions 1.3 dated 2024-05-08 and 1.5 dated 2025-04-04
DESCRIPTION | 6 +++--- MD5 | 42 +++++++++++++++++++++++++----------------- NAMESPACE | 2 ++ NEWS |only R/ergm.MSE.R |only R/ergm.MSE_boot.R |only R/ergm.MSE_count.R |only R/ergm.MSMA.R |only R/ergm.MSMA_boot.R |only R/ergm.mod.mma.R | 3 +++ R/ergmAME.R | 36 +++++++++++++++++++++++++++--------- R/ergmAME_boot.R | 11 +++++++++-- R/ergmAME_count.R | 11 ++++++++++- R/ergmMEM.R | 43 ++++++++++++++++++++++++++++++------------- R/ergmMEM_boot.R | 11 +++++++++-- R/ergmMEM_count.R | 11 +++++++++-- R/ergmMMA.R | 31 ++++--------------------------- R/ergmMMA_boot.R | 2 +- man/edge.prob2.Rd | 2 +- man/ergm.mma.Rd | 14 +++++++++----- man/ergm.mod.mma.Rd | 18 +++++++++++++----- man/ergm.msma.Rd |only man/ergmAME.Rd | 19 ++++++++++++++----- man/ergmMEM.Rd | 21 +++++++++++++++------ man/ergmMSE.Rd |only man/vif.ergm.Rd | 4 ++-- 26 files changed, 186 insertions(+), 101 deletions(-)
Title: Solving Mixed Model Equations in R
Description: Structural multivariate-univariate linear mixed model solver for estimation of multiple random effects with unknown variance-covariance structures (e.g., heterogeneous and unstructured) and known covariance among levels of random effects (e.g., pedigree and genomic relationship matrices) (Covarrubias-Pazaran, 2016 <doi:10.1371/journal.pone.0156744>; Maier et al., 2015 <doi:10.1016/j.ajhg.2014.12.006>; Jensen et al., 1997). REML estimates can be obtained using the Direct-Inversion Newton-Raphson and Direct-Inversion Average Information algorithms for the problems r x r (r being the number of records) or using the Henderson-based average information algorithm for the problem c x c (c being the number of coefficients to estimate). Spatial models can also be fitted using the two-dimensional spline functionality available.
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between sommer versions 4.3.7 dated 2025-02-03 and 4.4.1 dated 2025-04-04
sommer-4.3.7/sommer/R/FUN_algorithms.R |only sommer-4.3.7/sommer/R/FUN_spatial_a.R |only sommer-4.3.7/sommer/R/FUN_spatial_b.R |only sommer-4.3.7/sommer/R/FUN_spatial_c.R |only sommer-4.3.7/sommer/R/FUN_utils.R |only sommer-4.3.7/sommer/R/FUN_vsc.R |only sommer-4.3.7/sommer/R/FUN_vsgrvsr.R |only sommer-4.3.7/sommer/R/GWAS.R |only sommer-4.3.7/sommer/R/mmec.R |only sommer-4.3.7/sommer/R/mmer.R |only sommer-4.3.7/sommer/R/predict_mmec.R |only sommer-4.3.7/sommer/R/predict_mmer.R |only sommer-4.3.7/sommer/inst/doc/v1.sommer.quick.start.R |only sommer-4.3.7/sommer/inst/doc/v1.sommer.quick.start.Rmd |only sommer-4.3.7/sommer/inst/doc/v1.sommer.quick.start.pdf |only sommer-4.3.7/sommer/inst/doc/v2.sommer.changes.and.faqs.R |only sommer-4.3.7/sommer/inst/doc/v2.sommer.changes.and.faqs.Rmd |only sommer-4.3.7/sommer/inst/doc/v2.sommer.changes.and.faqs.pdf |only sommer-4.3.7/sommer/inst/doc/v3.sommer.qg.R |only sommer-4.3.7/sommer/inst/doc/v3.sommer.qg.Rmd |only sommer-4.3.7/sommer/inst/doc/v3.sommer.qg.pdf |only sommer-4.3.7/sommer/inst/doc/v4.sommer.gxe.R |only sommer-4.3.7/sommer/inst/doc/v4.sommer.gxe.Rmd |only sommer-4.3.7/sommer/inst/doc/v4.sommer.gxe.pdf |only sommer-4.3.7/sommer/inst/doc/v5.sommer.vs.lme4.R |only sommer-4.3.7/sommer/inst/doc/v5.sommer.vs.lme4.Rmd |only sommer-4.3.7/sommer/inst/doc/v5.sommer.vs.lme4.pdf |only sommer-4.3.7/sommer/inst/doc/v6.sommer.spatial.R |only sommer-4.3.7/sommer/inst/doc/v6.sommer.spatial.Rmd |only sommer-4.3.7/sommer/inst/doc/v6.sommer.spatial.pdf |only sommer-4.3.7/sommer/man/AI.Rd |only sommer-4.3.7/sommer/man/EM.Rd |only sommer-4.3.7/sommer/man/EMMA.Rd |only sommer-4.3.7/sommer/man/GWAS.Rd |only sommer-4.3.7/sommer/man/H.Rd |only sommer-4.3.7/sommer/man/anova_mmec.Rd |only sommer-4.3.7/sommer/man/anova_mmer.Rd |only sommer-4.3.7/sommer/man/atc.Rd |only sommer-4.3.7/sommer/man/atr.Rd |only sommer-4.3.7/sommer/man/bivariateRun.Rd |only sommer-4.3.7/sommer/man/coef_mmec.Rd |only 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sommer-4.4.1/sommer/tests/testthat/test-predict.R | 56 sommer-4.4.1/sommer/vignettes/sommer.gxe.Rmd |only sommer-4.4.1/sommer/vignettes/sommer.qg.Rmd |only sommer-4.4.1/sommer/vignettes/sommer.spatial.Rmd |only sommer-4.4.1/sommer/vignettes/sommer.vs.lme4.Rmd |only 204 files changed, 1603 insertions(+), 1422 deletions(-)
Title: Bayesian Wavelet Analysis Using Non-Local Priors
Description: Performs Bayesian wavelet analysis using individual non-local priors as described in Sanyal & Ferreira (2017) <DOI:10.1007/s13571-016-0129-3> and non-local prior mixtures as described in Sanyal (2025) <DOI:10.48550/arXiv.2501.18134>.
Author: Nilotpal Sanyal [aut, cre]
Maintainer: Nilotpal Sanyal <nsanyal@utep.edu>
Diff between NLPwavelet versions 1.0 dated 2025-02-13 and 1.1 dated 2025-04-04
DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/NLPwavelet.R | 2 +- src/NLPwavelet.cpp | 3 ++- 5 files changed, 16 insertions(+), 10 deletions(-)
Title: Generic PK/PD Simulation Platform CAMPSIS
Description: A generic, easy-to-use and intuitive
pharmacokinetic/pharmacodynamic (PK/PD) simulation platform based on R
packages 'rxode2' and 'mrgsolve'. CAMPSIS provides an abstraction
layer over the underlying processes of writing a PK/PD model,
assembling a custom dataset and running a simulation. CAMPSIS has a
strong dependency to the R package 'campsismod', which allows to
read/write a model from/to files and adapt it further on the fly in
the R environment. Package 'campsis' allows the user to assemble a
dataset in an intuitive manner. Once the user’s dataset is ready, the
package is in charge of preparing the simulation, calling 'rxode2' or
'mrgsolve' (at the user's choice) and returning the results, for the
given model, dataset and desired simulation settings.
Author: Nicolas Luyckx [aut, cre]
Maintainer: Nicolas Luyckx <nicolas.luyckx@calvagone.com>
Diff between campsis versions 1.6.0 dated 2025-02-09 and 1.7.0 dated 2025-04-04
DESCRIPTION | 18 MD5 | 97 + NAMESPACE | 398 +++---- NEWS.md | 10 R/arm.R | 72 + R/arms.R | 51 R/covariate.R | 2 R/dataset.R | 115 ++ R/dose_adaptation.R | 27 R/generic.R | 131 ++ R/observations.R | 14 R/repeated_schedule.R |only R/time_entry.R | 2 R/treatment.R | 109 +- R/treatment_entry.R | 525 +++++++--- R/utilities.R | 24 build/vignette.rds |binary inst/doc/v04_bioavailability.Rmd | 8 inst/doc/v05_lag_time.Rmd | 8 inst/doc/v06_infusions.Rmd | 8 man/Bolus.Rd | 22 man/CyclicSchedule.Rd |only man/DoseAdaptation.Rd | 6 man/Infusion.Rd | 28 man/Observations.Rd | 2 man/RepeatAtSchedule.Rd |only man/bolus_wrapper-class.Rd |only man/cyclic_schedule-class.Rd |only man/getCompartmentMapping.Rd |only man/infusion-class.Rd | 4 man/infusion_wrapper-class.Rd |only man/length-cyclic_schedule-method.Rd |only man/length-repeat_at_schedule-method.Rd |only man/observations-class.Rd | 2 man/repeatSchedule.Rd |only man/repeat_at_schedule-class.Rd |only man/repeated_schedule-class.Rd |only man/undefined_schedule-class.Rd |only man/unwrapTreatment.Rd |only man/updateADDL.Rd |only man/updateAmount.Rd |only man/updateII.Rd |only man/updateRepeat.Rd |only tests/testthat/non_regression/multiple_doses_repeat_option_cp.csv |only tests/testthat/non_regression/vectorised_compartment_properties.csv |only tests/testthat/testArms.R | 15 tests/testthat/testDataset.R | 458 +++++--- tests/testthat/testDoseAdaptation.R | 12 tests/testthat/testRepeatedSchedule.R |only tests/testthat/testSimulateBioavailability.R | 2 tests/testthat/testSimulateBolus.R | 61 - tests/testthat/testSimulateDoseAdaptation.R | 47 tests/testthat/testSimulateDosingInfo.R | 3 tests/testthat/testSimulateInfusion.R | 20 tests/testthat/testTreatment.R | 21 tests/testthat/testTreatmentEntry.R | 74 + tests/testthat/testUtils.R | 16 vignettes/v04_bioavailability.Rmd | 8 vignettes/v05_lag_time.Rmd | 8 vignettes/v06_infusions.Rmd | 8 60 files changed, 1751 insertions(+), 685 deletions(-)
Title: Local Partial Likelihood Estimation and Simultaneous Confidence
Band
Description: Local partial likelihood estimation by Fan, Lin and Zhou(2006)<doi:10.1214/009053605000000796> and simultaneous confidence band is a set of tools to test the covariates-biomarker interaction for survival data. Test for the covariates-biomarker interaction using the bootstrap method and the asymptotic method with simultaneous confidence band (Liu, Jiang and Chen (2015)<doi:10.1002/sim.6563>).
Author: Bingshu E. Chen [aut, cre],
Yicong Liu [aut],
Siwei Zhang [aut],
Teng Wen [aut],
Wenyu Jiang [aut]
Maintainer: Bingshu E. Chen <bingshu.chen@queensu.ca>
Diff between lpl versions 0.11 dated 2021-07-26 and 0.12 dated 2025-04-04
DESCRIPTION | 21 +++++++++++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 1 + R/lpl_basicFunctions.R | 2 +- R/lple.R | 4 ++-- man/lplb.Rd | 2 +- man/lple.Rd | 3 +-- man/predict.lple.Rd | 2 +- man/survfit.lple.Rd | 4 ++-- 9 files changed, 32 insertions(+), 23 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-11-11 0.1.9-1
2018-10-03 0.1.8-0
2017-11-01 0.1.7-0
2017-10-23 0.1.5
2017-10-22 0.1.4
2017-10-12 0.1.3
2017-07-20 0.1.2
2017-06-17 0.1.1
2017-06-15 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-15 0.0.2
2020-07-18 0.0.1
Title: Interface to the 'SymEngine' Library
Description: Provides an R interface to 'SymEngine' <https://github.com/symengine/>,
a standalone 'C++' library for fast symbolic manipulation. The package has functionalities
for symbolic computation like calculating exact mathematical expressions, solving
systems of linear equations and code generation.
Author: Jialin Ma [cre, aut],
Isuru Fernando [aut],
Xin Chen [aut]
Maintainer: Jialin Ma <marlin@inventati.org>
Diff between symengine versions 0.2.6 dated 2024-02-25 and 0.2.10 dated 2025-04-04
symengine-0.2.10/symengine/DESCRIPTION | 21 - symengine-0.2.10/symengine/MD5 | 29 -- symengine-0.2.10/symengine/NAMESPACE | 6 symengine-0.2.10/symengine/R/symbolic_array.R | 7 symengine-0.2.10/symengine/R/symengine.R | 3 symengine-0.2.10/symengine/build/vignette.rds |binary symengine-0.2.10/symengine/inst/doc/quick_start.html | 13 symengine-0.2.10/symengine/man/symengine.Rd | 19 + symengine-0.2.10/symengine/src/rbinding.cpp | 2 symengine-0.2.10/symengine/src/upstream.tar |binary symengine-0.2.10/symengine/tools/cran_comments/cran-comments_0.2.7.md |only symengine-0.2.10/symengine/tools/cran_comments/cran-comments_0.2.9.md |only symengine-0.2.10/symengine/tools/symengine_patch.diff | 135 +++++++++- symengine-0.2.6/symengine/R/dxdt.R |only symengine-0.2.6/symengine/inst/doc/odesystem.R |only symengine-0.2.6/symengine/inst/doc/odesystem.Rmd |only symengine-0.2.6/symengine/inst/doc/odesystem.html |only symengine-0.2.6/symengine/man/ODESystem.Rd |only symengine-0.2.6/symengine/tests/testthat/test-ODESystem.R |only symengine-0.2.6/symengine/vignettes/odesystem.Rmd |only 20 files changed, 187 insertions(+), 48 deletions(-)
Title: Regression Modeling Strategies
Description: Regression modeling, testing, estimation, validation,
graphics, prediction, and typesetting by storing enhanced model design
attributes in the fit. 'rms' is a collection of functions that
assist with and streamline modeling. It also contains functions for
binary and ordinal logistic regression models, ordinal models for
continuous Y with a variety of distribution families, and the Buckley-James
multiple regression model for right-censored responses, and implements
penalized maximum likelihood estimation for logistic and ordinary
linear models. 'rms' works with almost any regression model, but it
was especially written to work with binary or ordinal regression
models, Cox regression, accelerated failure time models,
ordinary linear models, the Buckley-James model, generalized least
squares for serially or spatially correlated observations, generalized
linear models, and quantile regression.
Author: Frank E Harrell Jr [aut, cre]
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between rms versions 7.0-0 dated 2025-01-17 and 8.0-0 dated 2025-04-04
DESCRIPTION | 17 - MD5 | 138 +++++--- NAMESPACE | 16 NEWS | 29 + R/Gls.s | 2 R/Ocens.r | 619 +++++++++++++++++++++++++++++++++---- R/Olinks.r |only R/Punits.r |only R/Survival.orm.r |only R/calibrate.orm.r |only R/contrast.s | 19 - R/cph.s | 2 R/ggplot.npsurv.r |only R/infoMxop.r | 5 R/intCalibration.r |only R/latex.lrm.s | 11 R/lrm.fit.r | 2 R/ordESS.r |only R/ordParallel.r |only R/orm.fit.s | 373 ++++++++++++++++------ R/orm.s | 113 ++++-- R/plotIntercepts.r | 45 ++ R/predab.resample.s | 11 R/predict.lrm.s | 42 +- R/predictrms.s | 4 R/quickRefit.r | 104 +++--- R/residuals.lrm.s | 138 +++++--- R/rms.s | 29 - R/rmsMisc.s | 25 - R/robcov.s | 4 R/survest.cph.s | 6 R/survest.orm.r |only R/survfit.cph.s | 3 R/survplot.npsurv.s | 6 R/survplot.orm.r |only R/survplot.rms.s | 111 +++--- R/survplotp.npsurv.s | 6 R/val.surv.s | 147 +++++--- R/validate.lrm.s | 64 +-- R/validate.ols.s | 1 inst/tests/Ocens.r |only inst/tests/Survival.orm.r |only inst/tests/calibrate.orm.r |only inst/tests/modelData.r | 36 +- inst/tests/ordParallel.r |only inst/tests/orm-censor-likelihood.r |only inst/tests/orm-censor.r |only inst/tests/orm-censor2.r |only inst/tests/orm-censor3.r |only inst/tests/orm.fit.r |only inst/tests/orm.s | 7 inst/tests/perlcode.s | 2 inst/tests/processMI.r | 6 inst/tests/robcov_Yuqi.r | 4 inst/tests/validate.orm.r |only man/ExProb.Rd | 47 ++ man/Ocens.Rd | 17 - man/Ocens2Surv.Rd |only man/Ocens2ord.Rd |only man/Olinks.Rd |only man/Predict.Rd | 5 man/Punits.Rd |only man/calibrate.Rd | 45 +- man/ggplot.npsurv.Rd |only man/infoMxop.Rd | 2 man/intCalibration.Rd |only man/is.na.Ocens.Rd |only man/npsurv.Rd | 3 man/ordESS.Rd |only man/ordParallel.Rd |only man/orm.Rd | 12 man/orm.fit.Rd | 22 - man/plotIntercepts.Rd | 8 man/predict.lrm.Rd | 4 man/print.Ocens.Rd |only man/residuals.lrm.Rd | 2 man/sub-.Ocens.Rd | 10 man/survest.orm.Rd |only man/survfit.cph.Rd | 4 man/survplot.Rd | 15 man/survplot.orm.Rd |only man/val.prob.Rd | 30 - man/val.surv.Rd | 43 +- src/init.c | 4 src/lrmll.f90 | 30 - src/ormll.f90 | 496 +++++++++++++++++++---------- 86 files changed, 2075 insertions(+), 871 deletions(-)
Title: Toolbox for Model Building and Forecasting
Description: Implements functions and instruments for regression model building and its
application to forecasting. The main scope of the package is in variables selection
and models specification for cases of time series data. This includes promotional
modelling, selection between different dynamic regressions with non-standard
distributions of errors, selection based on cross validation, solutions to the fat
regression model problem and more. Models developed in the package are tailored
specifically for forecasting purposes. So as a results there are several methods
that allow producing forecasts from these models and visualising them.
Author: Ivan Svetunkov [aut, cre] ,
Yves R. Sagaert [ctb]
Maintainer: Ivan Svetunkov <ivan@svetunkov.com>
Diff between greybox versions 2.0.3 dated 2024-12-09 and 2.0.4 dated 2025-04-04
DESCRIPTION | 8 - MD5 | 46 ++++---- NAMESPACE | 4 NEWS | 13 ++ R/AutomaticDemandIdentifier.R | 236 ++++++++++++++++++++++++++++++++---------- R/alm.R | 5 R/dsrboot.R | 21 ++- R/graphmaker.R | 73 ++++++++---- R/methods.R | 3 R/spread.R | 34 +++--- R/tableplot.R | 44 +++++-- build/partial.rdb |binary build/vignette.rds |binary inst/doc/alm.R | 8 - inst/doc/alm.html | 10 - inst/doc/greybox.html | 4 inst/doc/maUsingGreybox.html | 8 - inst/doc/ro.html | 4 man/accuracy.Rd | 3 man/aid.Rd | 21 +++ man/dsrboot.Rd | 2 man/graphmaker.Rd | 10 - man/spread.Rd | 3 man/tableplot.Rd | 10 + 24 files changed, 390 insertions(+), 180 deletions(-)
Title: Analyzes Real-World Treatment Patterns of a Study Population of
Interest
Description: Computes treatment patterns within a given cohort using the Observational
Medical Outcomes Partnership (OMOP) common data model (CDM). As described
in Markus, Verhamme, Kors, and Rijnbeek (2022) <doi:10.1016/j.cmpb.2022.107081>.
Author: Aniek Markus [aut] ,
Maarten van Kessel [cre]
Maintainer: Maarten van Kessel <m.l.vankessel@erasmusmc.nl>
Diff between TreatmentPatterns versions 3.0.1 dated 2025-03-10 and 3.0.2 dated 2025-04-04
DESCRIPTION | 6 MD5 | 22 +- NAMESPACE | 1 NEWS.md | 8 R/CDMInterface.R | 11 - R/computePathways.R | 4 R/constructPathways.R | 41 ++-- README.md | 18 + inst/doc/DefiningCohorts.html | 16 - inst/sql/selectData.sql | 50 ++-- tests/testthat/test-pathwaysLogical.R | 194 ++++++++++++++++++- tests/testthat/test-pathwaysMultipleTargetsLogical.R | 45 ++-- 12 files changed, 326 insertions(+), 90 deletions(-)
More information about TreatmentPatterns at CRAN
Permanent link
Title: Survival Support Vector Analysis
Description: Performs support vectors analysis for data sets with survival
outcome. Three approaches are available in the package: The regression approach
takes censoring into account when formulating the inequality constraints of
the support vector problem. In the ranking approach, the inequality constraints
set the objective to maximize the concordance index for comparable pairs
of observations. The hybrid approach combines the regression and ranking
constraints in the same model.
Author: Cesaire J. K. Fouodo [aut, cre]
Maintainer: Cesaire J. K. Fouodo <cesaire.kuetefouodo@uni-luebeck.de>
Diff between survivalsvm versions 0.0.5 dated 2018-02-05 and 0.0.6 dated 2025-04-04
DESCRIPTION | 24 ++++++---- MD5 | 91 ++++++++++++++++++++-------------------- NAMESPACE | 11 ++++ NEWS.md | 4 + R/Diffmatrix.R | 38 ++++++++--------- R/hybrid.R | 44 ++++++++++++------- R/kernels.R | 98 +++++++++++++++++++++----------------------- R/regression.R | 33 ++++++++------ R/survivalsvm.R | 22 +++++---- R/vanbelle1.R | 55 +++++++++++++----------- R/vanbelle2.R | 18 ++++---- README.md | 12 ++++- man/HybridObj.Rd | 14 ++++-- man/RegFitObj.Rd | 3 - man/VB1FitObj.Rd | 9 +++- man/VB2FitObj.Rd | 9 +++- man/getBeta.HybridObj.Rd | 4 - man/getKernel.VB1FitObj.Rd | 4 - man/getMat.Diffmatrix.Rd | 4 - man/getMat.Kernel.Rd | 4 - man/getMat.Rd | 4 - man/getMat.default.Rd | 4 - man/getOptMeth.VB1FitObj.Rd | 4 - man/getType.Diffmatrix.Rd | 6 +- man/getType.Kernel.Rd | 4 - man/getType.Rd | 6 +- man/getType.default.Rd | 6 +- man/hybridFit.Rd | 40 ++++++++++++----- man/kernelMatrix.Rd | 9 +++- man/regFit.Rd | 38 +++++++++++------ man/setAlpha.Rd | 4 - man/setBeta.HybridObj.Rd | 4 - man/setDelta.HybridObj.Rd |only man/setKernel.VB1FitObj.Rd | 4 - man/setKernel.default.Rd | 4 - man/setMat.Diffmatrix.Rd | 6 +- man/setMat.Kernel.Rd | 6 +- man/setMat.Rd | 4 - man/setMatrix.default.Rd | 6 +- man/setOptMeth.VB1FitObj.Rd | 4 - man/setType.Diffmatrix.Rd | 6 +- man/setType.Kernel.Rd | 6 +- man/setType.Rd | 6 +- man/setType.default.Rd | 6 +- man/survivalsvm.Rd | 49 ++++++++++++++-------- man/vanbelle1Fit.Rd | 40 ++++++++++++----- man/vanbelle2Fit.Rd | 40 ++++++++++++----- 47 files changed, 478 insertions(+), 339 deletions(-)
Title: Convert 'sjPlot' HTML-Tables to R 'data.frame'
Description: A small set of helper functions to convert 'sjPlot'
HTML-tables to R data.frame objects / knitr::kable-tables.
Author: Lorenz A. Kapsner [cre, aut, cph]
Maintainer: Lorenz A. Kapsner <lorenz.kapsner@gmail.com>
Diff between sjtable2df versions 0.0.3 dated 2023-04-13 and 0.0.4 dated 2025-04-04
sjtable2df-0.0.3/sjtable2df/inst/doc/sjtable2df_overview.Rmd |only sjtable2df-0.0.3/sjtable2df/vignettes/sjtable2df_overview.Rmd |only sjtable2df-0.0.4/sjtable2df/DESCRIPTION | 19 sjtable2df-0.0.4/sjtable2df/MD5 | 24 sjtable2df-0.0.4/sjtable2df/build/vignette.rds |binary sjtable2df-0.0.4/sjtable2df/inst/doc/sjtable2df_overview.R | 28 sjtable2df-0.0.4/sjtable2df/inst/doc/sjtable2df_overview.html | 3274 +++------- sjtable2df-0.0.4/sjtable2df/inst/doc/sjtable2df_overview.qmd |only sjtable2df-0.0.4/sjtable2df/man/mtab2df.Rd | 10 sjtable2df-0.0.4/sjtable2df/man/xtab2df.Rd | 10 sjtable2df-0.0.4/sjtable2df/tests/testthat/_snaps/mtab2df.md | 404 - sjtable2df-0.0.4/sjtable2df/tests/testthat/_snaps/xtab2df.md | 678 -- sjtable2df-0.0.4/sjtable2df/tests/testthat/test-mtab2df.R | 43 sjtable2df-0.0.4/sjtable2df/tests/testthat/test-xtab2df.R | 71 sjtable2df-0.0.4/sjtable2df/vignettes/sjtable2df_overview.qmd |only 15 files changed, 1400 insertions(+), 3161 deletions(-)
Title: Linear Models for Panel Data
Description: A set of estimators for models and (robust) covariance matrices, and tests for panel data
econometrics, including within/fixed effects, random effects, between, first-difference,
nested random effects as well as instrumental-variable (IV) and Hausman-Taylor-style models,
panel generalized method of moments (GMM) and general FGLS models,
mean groups (MG), demeaned MG, and common correlated effects (CCEMG) and pooled (CCEP) estimators
with common factors, variable coefficients and limited dependent variables models.
Test functions include model specification, serial correlation, cross-sectional dependence,
panel unit root and panel Granger (non-)causality. Typical references are general econometrics
text books such as Baltagi (2021), Econometric Analysis of Panel Data (<doi:10.1007/978-3-030-53953-5>),
Hsiao (2014), Analysis of Panel Data (<doi:10.1017/CBO9781139839327>), and Croissant and Millo (2018),
Panel Data Econometrics with R (<doi:10.1002/9781119504641>).
Author: Yves Croissant [aut],
Giovanni Millo [aut],
Kevin Tappe [aut, cre],
Ott Toomet [ctb],
Christian Kleiber [ctb],
Achim Zeileis [ctb],
Arne Henningsen [ctb],
Liviu Andronic [ctb],
Nina Schoenfelder [ctb]
Maintainer: Kevin Tappe <kevin.tappe@bwi.uni-stuttgart.de>
Diff between plm versions 2.6-5 dated 2025-01-17 and 2.6-6 dated 2025-04-04
DESCRIPTION | 8 - MD5 | 38 ++++---- NAMESPACE | 1 NEWS.md | 34 +++++-- R/est_gmm.R | 13 ++ R/est_vcm.R | 2 R/test_uroot.R | 8 - R/tool_methods.R | 37 +++++-- R/tool_vcovG.R | 175 +++++++++++++------------------------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/A_plmPackage.Rmd | 8 - inst/doc/A_plmPackage.html | 12 +- inst/doc/B_plmFunction.html | 4 inst/doc/C_plmModelComponents.html | 4 man/predict.plm.Rd | 2 man/sargan.Rd | 9 + man/vcovBK.Rd | 4 man/vcovG.Rd | 8 - vignettes/A_plmPackage.Rmd | 8 - 20 files changed, 186 insertions(+), 189 deletions(-)
Title: Simultaneous Comparisons for Multiple Endpoints
Description: Simultaneous tests and confidence intervals are provided for one-way experimental designs with one or many normally distributed, primary response variables (endpoints). Differences (Hasler and Hothorn, 2011 <doi:10.2202/1557-4679.1258>) or ratios (Hasler and Hothorn, 2012 <doi:10.1080/19466315.2011.633868>) of means can be considered. Various contrasts can be chosen, unbalanced sample sizes are allowed as well as heterogeneous variances (Hasler and Hothorn, 2008 <doi:10.1002/bimj.200710466>) or covariance matrices (Hasler, 2014 <doi:10.1515/ijb-2012-0015>).
Author: Mario Hasler [aut, cre],
Christof Kluss [aut]
Maintainer: Mario Hasler <hasler@email.uni-kiel.de>
Diff between SimComp versions 3.3 dated 2019-08-26 and 3.6 dated 2025-04-04
DESCRIPTION | 18 +++++++++++++----- MD5 | 26 +++++++++++++------------- R/SimCiDiff.default.R | 4 ++-- R/SimCiRat.default.R | 4 ++-- R/SimTestDiff.default.R | 4 ++-- R/SimTestRat.default.R | 4 ++-- R/summary.SimTest.R | 2 +- build/partial.rdb |binary man/SimCiDiff.Rd | 5 +++-- man/SimCiRat.Rd | 5 +++-- man/SimComp-package.Rd | 2 -- man/SimTestDiff.Rd | 11 ++++++----- man/SimTestRat.Rd | 8 ++++---- man/ermvnorm.Rd | 13 +++++++------ 14 files changed, 58 insertions(+), 48 deletions(-)
Title: 'Java' Environments for R Projects
Description: Quickly install 'Java Development Kit (JDK)' without
administrative privileges and set environment variables in current R
session or project to solve common issues with 'Java' environment
management in 'R'. Recommended to users of 'Java'/'rJava'-dependent
'R' packages such as 'r5r', 'opentripplanner', 'xlsx', 'openNLP',
'rWeka', 'RJDBC', 'tabulapdf', and many more. 'rJavaEnv' prevents
common problems like 'Java' not found, 'Java' version conflicts,
missing 'Java' installations, and the inability to install 'Java' due
to lack of administrative privileges. 'rJavaEnv' automates the
download, installation, and setup of the 'Java' on a per-project basis
by setting the relevant 'JAVA_HOME' in the current 'R' session or the
current working directory (via '.Rprofile', with the user's consent).
Similar to what 'renv' does for 'R' packages, 'rJavaEnv' allows
different 'Java' versions to be used across different projects, but
can also be configured to allow multiple versions within the same
proj [...truncated...]
Author: Egor Kotov [aut, cre, cph] ,
Chung-hong Chan [aut] ,
Mauricio Vargas [ctb] ,
Hadley Wickham [ctb] ,
Enrique Mondragon-Estrada [ctb]
,
Jonas Lieth [ctb]
Maintainer: Egor Kotov <kotov.egor@gmail.com>
Diff between rJavaEnv versions 0.2.2 dated 2024-09-13 and 0.3.0 dated 2025-04-04
DESCRIPTION | 20 +++-- MD5 | 61 ++++++++------- NAMESPACE | 1 NEWS.md | 18 ++++ R/internal_utilities.R | 30 +++++-- R/java_download.R | 95 +++++++++++++++++------ R/java_env.R | 34 ++++---- R/java_install.R | 70 +++++++++++++---- R/java_unpack.R | 44 ++++++----- R/java_valid_versions.R |only R/onLoad.R | 100 ++++++++++++++++++++++++- R/use_java.R | 24 +++--- README.md | 39 +++++++-- build/vignette.rds |binary inst/CITATION | 18 ++-- inst/doc/multiple-java-with-targets-callr.R | 2 inst/doc/multiple-java-with-targets-callr.html | 12 ++- inst/doc/multiple-java-with-targets-callr.qmd | 8 +- inst/doc/rJavaEnv-step-by-step.R | 2 inst/doc/rJavaEnv-step-by-step.html | 2 inst/doc/rJavaEnv.R | 8 +- inst/doc/rJavaEnv.html | 2 inst/extdata/java_urls.json | 10 +- inst/schemaorg.json | 56 +++++++++++--- man/figures/logo.png |binary man/java_download.Rd | 5 + man/java_quick_install.Rd | 2 man/java_valid_major_versions_corretto.Rd |only man/java_valid_versions.Rd |only man/rJavaEnv-package.Rd | 7 + man/use_java.Rd | 2 tests |only vignettes/multiple-java-with-targets-callr.qmd | 8 +- 33 files changed, 494 insertions(+), 186 deletions(-)
Title: Radiocarbon Calibration Curves
Description: The IntCal20 radiocarbon calibration curves (Reimer et al. 2020 <doi:10.1017/RDC.2020.68>) are provided as a data package, together with previous IntCal curves (IntCal13, IntCal09, IntCal04, IntCal98), other curves (e.g., NOTCal04 [van der Plicht et al. 2004], Arnold & Libby 1951) and postbomb curves. Also provided are functions to copy the curves into memory, and to read, query and plot the data underlying the IntCal20 curves.
Author: Maarten Blaauw [aut, cre]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rintcal versions 1.1.2 dated 2025-01-12 and 1.1.3 dated 2025-04-04
DESCRIPTION | 6 +-- MD5 | 20 +++++----- NEWS.md | 4 ++ R/data.R | 26 ++++++------- R/rintcal.R | 93 ++++++++++++++++++++++++++++++++------------------ build/partial.rdb |binary build/vignette.rds |binary inst/doc/rintcal.html | 20 +++++----- man/ccurve.Rd | 10 ++++- man/glue.ccurves.Rd | 8 +++- man/mix.ccurves.Rd | 8 +++- 11 files changed, 122 insertions(+), 73 deletions(-)
Title: Multilevel Propensity Score Analysis
Description: Conducts and visualizes propensity score analysis for
multilevel, or clustered data. Bryer & Pruzek (2011)
<doi:10.1080/00273171.2011.636693>.
Author: Jason Bryer [aut, cre]
Maintainer: Jason Bryer <jason@bryer.org>
Diff between multilevelPSA versions 1.2.5 dated 2018-03-22 and 1.3.0 dated 2025-04-04
multilevelPSA-1.2.5/multilevelPSA/NEWS |only multilevelPSA-1.3.0/multilevelPSA/DESCRIPTION | 38 ++- multilevelPSA-1.3.0/multilevelPSA/MD5 | 108 +++++----- multilevelPSA-1.3.0/multilevelPSA/NAMESPACE | 5 multilevelPSA-1.3.0/multilevelPSA/NEWS.md |only multilevelPSA-1.3.0/multilevelPSA/R/align.R | 29 +- multilevelPSA-1.3.0/multilevelPSA/R/covariate.balance.R | 8 multilevelPSA-1.3.0/multilevelPSA/R/covariateBalance.R | 2 multilevelPSA-1.3.0/multilevelPSA/R/lsos.R | 2 multilevelPSA-1.3.0/multilevelPSA/R/mlpsa.R | 4 multilevelPSA-1.3.0/multilevelPSA/R/mlpsa.ctree.R | 6 multilevelPSA-1.3.0/multilevelPSA/R/mlpsa.logistic.R | 4 multilevelPSA-1.3.0/multilevelPSA/R/multilevelPSA-package.R | 37 +-- multilevelPSA-1.3.0/multilevelPSA/R/plot.balance.R | 4 multilevelPSA-1.3.0/multilevelPSA/R/plot.difftable.R | 2 multilevelPSA-1.3.0/multilevelPSA/R/plot.loess.R | 4 multilevelPSA-1.3.0/multilevelPSA/R/plot.mlpsa.R | 5 multilevelPSA-1.3.0/multilevelPSA/R/plot.mlpsa.circ.R | 14 - multilevelPSA-1.3.0/multilevelPSA/R/plot.mlpsa.difference.R | 2 multilevelPSA-1.3.0/multilevelPSA/R/plot.mlpsa.distribution.R | 2 multilevelPSA-1.3.0/multilevelPSA/R/plot.tree.R | 2 multilevelPSA-1.3.0/multilevelPSA/R/xtable.mlpsa.r | 28 +- multilevelPSA-1.3.0/multilevelPSA/build |only multilevelPSA-1.3.0/multilevelPSA/demo/pisa.R | 6 multilevelPSA-1.3.0/multilevelPSA/demo/psrange.r | 4 multilevelPSA-1.3.0/multilevelPSA/inst/CITATION | 16 - multilevelPSA-1.3.0/multilevelPSA/inst/doc |only multilevelPSA-1.3.0/multilevelPSA/man/align.plots.Rd | 4 multilevelPSA-1.3.0/multilevelPSA/man/as.data.frame.covariate.balance.Rd | 5 multilevelPSA-1.3.0/multilevelPSA/man/covariateBalance.Rd | 25 +- multilevelPSA-1.3.0/multilevelPSA/man/difftable.plot.Rd | 2 multilevelPSA-1.3.0/multilevelPSA/man/getPropensityScores.Rd | 2 multilevelPSA-1.3.0/multilevelPSA/man/getStrata.Rd | 2 multilevelPSA-1.3.0/multilevelPSA/man/loess.plot.Rd | 22 +- multilevelPSA-1.3.0/multilevelPSA/man/lsos.Rd | 4 multilevelPSA-1.3.0/multilevelPSA/man/missing.plot.Rd | 12 - multilevelPSA-1.3.0/multilevelPSA/man/mlpsa.Rd | 16 - multilevelPSA-1.3.0/multilevelPSA/man/mlpsa.circ.plot.Rd | 36 ++- multilevelPSA-1.3.0/multilevelPSA/man/mlpsa.ctree.Rd | 4 multilevelPSA-1.3.0/multilevelPSA/man/mlpsa.difference.plot.Rd | 26 +- multilevelPSA-1.3.0/multilevelPSA/man/mlpsa.distribution.plot.Rd | 17 + multilevelPSA-1.3.0/multilevelPSA/man/mlpsa.logistic.Rd | 2 multilevelPSA-1.3.0/multilevelPSA/man/multilevelPSA-package.Rd | 17 - multilevelPSA-1.3.0/multilevelPSA/man/pisa.colnames.Rd | 12 - multilevelPSA-1.3.0/multilevelPSA/man/pisa.countries.Rd | 4 multilevelPSA-1.3.0/multilevelPSA/man/pisa.psa.cols.Rd | 4 multilevelPSA-1.3.0/multilevelPSA/man/pisana.Rd | 15 - multilevelPSA-1.3.0/multilevelPSA/man/plot.covariate.balance.Rd | 22 +- multilevelPSA-1.3.0/multilevelPSA/man/plot.mlpsa.Rd | 5 multilevelPSA-1.3.0/multilevelPSA/man/plot.psrange.Rd | 20 + multilevelPSA-1.3.0/multilevelPSA/man/print.covariate.balance.Rd | 2 multilevelPSA-1.3.0/multilevelPSA/man/print.xmlpsa.Rd | 15 - multilevelPSA-1.3.0/multilevelPSA/man/psrange.Rd | 12 - multilevelPSA-1.3.0/multilevelPSA/man/tree.plot.Rd | 14 + multilevelPSA-1.3.0/multilevelPSA/man/xtable.mlpsa.Rd | 29 +- multilevelPSA-1.3.0/multilevelPSA/vignettes |only 56 files changed, 413 insertions(+), 269 deletions(-)
Title: Causal Modeling with Coincidence Analysis
Description: Provides comprehensive functionalities for causal modeling with Coincidence Analysis (CNA), which is a configurational comparative method of causal data analysis that was first introduced in Baumgartner (2009) <doi:10.1177/0049124109339369>, and generalized in Baumgartner & Ambuehl (2020) <doi:10.1017/psrm.2018.45>. CNA is designed to recover INUS-causation from data, which is particularly relevant for analyzing processes featuring conjunctural causation (component causation) and equifinality (alternative causation). CNA is currently the only method for INUS-discovery that allows for multiple effects (outcomes/endogenous factors), meaning it can analyze common-cause and causal chain structures. Moreover, as of version 4.0, it is the only method of its kind that provides measures for model evaluation and selection that are custom-made for the problem of INUS-discovery.
Author: Mathias Ambuehl [aut, cre, cph],
Michael Baumgartner [aut, cph],
Ruedi Epple [ctb],
Veli-Pekka Parkkinen [ctb],
Alrik Thiem [ctb]
Maintainer: Mathias Ambuehl <mathias.ambuehl@consultag.ch>
Diff between cna versions 3.6.2 dated 2024-07-05 and 4.0.0 dated 2025-04-04
cna-3.6.2/cna/R/allCombs_makefuzzy.r |only cna-3.6.2/cna/R/details.R |only cna-3.6.2/cna/R/equivClass.R |only cna-3.6.2/cna/man/allCombs.Rd |only cna-3.6.2/cna/man/figures/structures2.png |only cna-3.6.2/cna/man/figures/structures3.png |only cna-3.6.2/cna/man/minimalizeCsf.Rd |only cna-3.6.2/cna/man/redundant.Rd |only cna-3.6.2/cna/man/rreduce.Rd |only cna-3.6.2/cna/man/shortcuts.Rd |only cna-4.0.0/cna/DESCRIPTION | 10 cna-4.0.0/cna/MD5 | 150 ++-- cna-4.0.0/cna/NAMESPACE | 43 - cna-4.0.0/cna/R/RcppExports.R | 96 ++- cna-4.0.0/cna/R/auxConfigTable.R | 16 cna-4.0.0/cna/R/cna-deprecated.R | 56 + cna-4.0.0/cna/R/cna.r | 297 ++++----- cna-4.0.0/cna/R/cnaControl.R |only cna-4.0.0/cna/R/cna_accel.r | 20 cna-4.0.0/cna/R/cna_aux.r | 83 ++ cna-4.0.0/cna/R/coherence.r | 13 cna-4.0.0/cna/R/condTbl.r | 141 +++- cna-4.0.0/cna/R/condition.r | 94 +-- cna-4.0.0/cna/R/condition_aux.R | 56 - cna-4.0.0/cna/R/configTable.R | 63 -- cna-4.0.0/cna/R/csf.R | 128 ++-- cna-4.0.0/cna/R/ct2df.r | 10 cna-4.0.0/cna/R/ctiList.R | 16 cna-4.0.0/cna/R/detailMeasures.R |only cna-4.0.0/cna/R/exfaith.R | 14 cna-4.0.0/cna/R/full.ct.R | 26 cna-4.0.0/cna/R/getCondtype.R | 70 -- cna-4.0.0/cna/R/is.inus.R | 52 - cna-4.0.0/cna/R/makefuzzy.r |only cna-4.0.0/cna/R/measures_definitions.R |only cna-4.0.0/cna/R/minimalizeCsf.R | 92 +- cna-4.0.0/cna/R/print.cna.r | 49 - cna-4.0.0/cna/R/print.condList.R | 27 cna-4.0.0/cna/R/print.condition.R | 22 cna-4.0.0/cna/R/qcond.R | 117 ++- cna-4.0.0/cna/R/randomConds.R | 5 cna-4.0.0/cna/R/rreduce.R | 2 cna-4.0.0/cna/R/selectCases.r | 4 cna-4.0.0/cna/build/partial.rdb |only cna-4.0.0/cna/build/vignette.rds |binary cna-4.0.0/cna/inst/NEWS | 14 cna-4.0.0/cna/inst/doc/cna.R | 282 ++++----- cna-4.0.0/cna/inst/doc/cna.Rnw | 780 ++++++++++++++---------- cna-4.0.0/cna/inst/doc/cna.pdf |binary cna-4.0.0/cna/man/cna-deprecated.Rd | 92 +- cna-4.0.0/cna/man/cna-internals.Rd | 148 ++-- cna-4.0.0/cna/man/cna-package.Rd | 34 - cna-4.0.0/cna/man/cna-solutions.Rd |only cna-4.0.0/cna/man/cna.Rd | 939 ++++++++++++------------------ cna-4.0.0/cna/man/cnaControl.Rd |only cna-4.0.0/cna/man/coherence.Rd | 7 cna-4.0.0/cna/man/condList-methods.Rd | 140 ++-- cna-4.0.0/cna/man/condTbl.Rd | 329 +++------- cna-4.0.0/cna/man/condition.Rd | 483 ++++++++------- cna-4.0.0/cna/man/configTable.Rd | 328 +++++----- cna-4.0.0/cna/man/ct2df.Rd | 32 - cna-4.0.0/cna/man/cyclic.Rd | 14 cna-4.0.0/cna/man/detailMeasures.Rd |only cna-4.0.0/cna/man/fs2cs.Rd |only cna-4.0.0/cna/man/full.ct.Rd | 287 +++++---- cna-4.0.0/cna/man/is.inus.Rd | 398 ++++++------ cna-4.0.0/cna/man/is.submodel.Rd | 171 ++--- cna-4.0.0/cna/man/makeFuzzy.Rd | 112 +-- cna-4.0.0/cna/man/minimalize.Rd | 162 ++--- cna-4.0.0/cna/man/print.cna.Rd |only cna-4.0.0/cna/man/randomConds.Rd | 403 ++++++------ cna-4.0.0/cna/man/selectCases.Rd | 178 ++--- cna-4.0.0/cna/man/showMeasures.Rd |only cna-4.0.0/cna/man/some.Rd | 142 ++-- cna-4.0.0/cna/src/C_relist.cpp | 2 cna-4.0.0/cna/src/C_varies.cpp | 32 - cna-4.0.0/cna/src/RcppExports.cpp | 309 ++++++++- cna-4.0.0/cna/src/asf_search.cpp | 42 - cna-4.0.0/cna/src/cna_init.c | 204 +++--- cna-4.0.0/cna/src/conCov.cpp | 231 +++++-- cna-4.0.0/cna/src/conCovDetailed.cpp |only cna-4.0.0/cna/src/headers.h | 61 + cna-4.0.0/cna/src/minimal_submodel.cpp | 2 cna-4.0.0/cna/src/typedefs.h | 6 cna-4.0.0/cna/src/utils.cpp | 36 + cna-4.0.0/cna/vignettes/cna.Rnw | 780 ++++++++++++++---------- cna-4.0.0/cna/vignettes/plot1.pdf |binary 87 files changed, 4925 insertions(+), 4027 deletions(-)
Title: System Native Font Finding
Description: Provides system native access to the font catalogue. As font
handling varies between systems it is difficult to correctly locate
installed fonts across different operating systems. The 'systemfonts'
package provides bindings to the native libraries on Windows, macOS
and Linux for finding font files that can then be used further by e.g.
graphic devices. The main use is intended to be from compiled code but
'systemfonts' also provides access from R.
Author: Thomas Lin Pedersen [aut, cre]
,
Jeroen Ooms [aut] ,
Devon Govett [aut] ,
Posit, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between systemfonts versions 1.2.1 dated 2025-01-20 and 1.2.2 dated 2025-04-04
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/register_font.R | 15 ++++++++++++--- man/add_fonts.Rd | 2 +- src/Makevars.in | 2 +- 6 files changed, 28 insertions(+), 13 deletions(-)
Title: Behavior-Driven Development for R
Description: Write executable specifications in a natural language that describes how your code should behave.
Write specifications in feature files using 'Gherkin' language and execute them using functions implemented in R.
Use them as an extension to your 'testthat' tests to provide a high level description of how your code works.
Author: Jakub Sobolewski [aut, cre]
Maintainer: Jakub Sobolewski <jakupsob@gmail.com>
Diff between cucumber versions 1.2.1 dated 2025-03-20 and 2.0.0 dated 2025-04-04
cucumber-1.2.1/cucumber/inst/examples/box_support/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/comments/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/covr_support |only cucumber-1.2.1/cucumber/inst/examples/custom_parameters/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/custom_steps_loader |only cucumber-1.2.1/cucumber/inst/examples/custom_test_dir/tests/acceptance/guess_the_word.feature |only cucumber-1.2.1/cucumber/inst/examples/custom_test_dir/tests/acceptance/steps |only cucumber-1.2.1/cucumber/inst/examples/custom_test_dir/tests/acceptance/test-cucumber.R |only cucumber-1.2.1/cucumber/inst/examples/custom_test_dir/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/docstring/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/hooks/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/hooks_after_error/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/long_scenario/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/multiple_features/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/one_feature/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/scenario_outline/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/shinytest2/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/snapshot_test/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/table/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/testthat_setup_files/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/with_testthat_failure/tests/testthat |only cucumber-1.2.1/cucumber/inst/examples/with_testthat_success/tests/testthat |only cucumber-1.2.1/cucumber/tests/testthat/_snaps/examples.md |only cucumber-2.0.0/cucumber/DESCRIPTION | 6 cucumber-2.0.0/cucumber/MD5 | 193 ++++------ cucumber-2.0.0/cucumber/NAMESPACE | 11 cucumber-2.0.0/cucumber/NEWS.md | 6 cucumber-2.0.0/cucumber/R/doc-opts.R | 6 cucumber-2.0.0/cucumber/R/hooks.R | 18 cucumber-2.0.0/cucumber/R/parse_token.R | 31 - cucumber-2.0.0/cucumber/R/run.R | 3 cucumber-2.0.0/cucumber/R/step.R | 4 cucumber-2.0.0/cucumber/R/test.R | 169 +++++--- cucumber-2.0.0/cucumber/R/tokenize.R | 2 cucumber-2.0.0/cucumber/README.md | 144 +++---- cucumber-2.0.0/cucumber/build/vignette.rds |binary cucumber-2.0.0/cucumber/inst/doc/bdd.R | 11 cucumber-2.0.0/cucumber/inst/doc/bdd.html | 49 +- cucumber-2.0.0/cucumber/inst/doc/bdd.qmd | 19 cucumber-2.0.0/cucumber/inst/doc/how-it-works.html | 6 cucumber-2.0.0/cucumber/inst/doc/how-it-works.qmd | 6 cucumber-2.0.0/cucumber/inst/doc/migration-to-2-0-0.html |only cucumber-2.0.0/cucumber/inst/doc/migration-to-2-0-0.qmd |only cucumber-2.0.0/cucumber/inst/doc/reference-gherkin.html | 2 cucumber-2.0.0/cucumber/inst/doc/reference-gherkin.qmd | 2 cucumber-2.0.0/cucumber/inst/examples/box_support/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/comments/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/custom_loading |only cucumber-2.0.0/cucumber/inst/examples/custom_parameters/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/custom_test_dir/tests/acceptance/test-dummy.R |only cucumber-2.0.0/cucumber/inst/examples/custom_test_dir/tests/e2e |only cucumber-2.0.0/cucumber/inst/examples/docstring/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/hooks/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/hooks_after_error/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/long_scenario/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/multiple_features/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/one_feature/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/scenario_outline/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/shinytest2/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/snapshot_test/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/table/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/testthat_setup_files/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/with_test_files |only cucumber-2.0.0/cucumber/inst/examples/with_testthat_failure/tests/acceptance |only cucumber-2.0.0/cucumber/inst/examples/with_testthat_filtering |only cucumber-2.0.0/cucumber/inst/examples/with_testthat_success/tests/acceptance |only cucumber-2.0.0/cucumber/man/hook.Rd | 21 - cucumber-2.0.0/cucumber/man/opts.Rd | 5 cucumber-2.0.0/cucumber/man/step.Rd | 4 cucumber-2.0.0/cucumber/man/test.Rd | 71 ++- cucumber-2.0.0/cucumber/tests/testthat/_snaps/local |only cucumber-2.0.0/cucumber/tests/testthat/test-examples.R | 144 ++++--- cucumber-2.0.0/cucumber/vignettes/bdd.qmd | 19 cucumber-2.0.0/cucumber/vignettes/how-it-works.qmd | 6 cucumber-2.0.0/cucumber/vignettes/migration-to-2-0-0.qmd |only cucumber-2.0.0/cucumber/vignettes/reference-gherkin.qmd | 2 76 files changed, 522 insertions(+), 438 deletions(-)
Title: Convert, Validate, Format and Print Geographic Coordinates and
Waypoints
Description: Convert, validate, format and elegantly print geographic coordinates and waypoints
(paired latitude and longitude values) in decimal degrees, degrees and minutes, and degrees,
minutes and seconds using high performance C++ code to enable rapid conversion and formatting
of large coordinate and waypoint datasets.
Author: Mark Eisler [aut, cre, cph]
Maintainer: Mark Eisler <mark.eisler@bristol.ac.uk>
Diff between Waypoint versions 1.1.0 dated 2025-03-19 and 1.1.1 dated 2025-04-04
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ NEWS.md | 9 +++++++++ R/CoordBase.R | 40 +++++++++++++++++++++++++++++++--------- R/RcppExports.R | 8 ++++---- README.md | 16 +++++++++++++--- build/partial.rdb |binary man/coords.Rd | 2 +- man/format.Rd | 8 ++++++++ man/validate.Rd | 14 ++++++++++++-- man/waypoints.Rd | 4 ++-- src/CoordBase.cpp | 43 ++++++++++++++++++++++++++++--------------- src/RcppExports.cpp | 18 ++++++++++-------- 13 files changed, 134 insertions(+), 60 deletions(-)
Title: Synthesise and Correlate Likert Scale and Rating-Scale Data
Based on Summary Statistics Only
Description: Generate and correlate synthetic Likert and rating-scale data
with predefined means, standard deviations, _Cronbach's Alpha_,
_Factor Loading table_, and other summary statistics.
Author: Hume Winzar [cre, aut]
Maintainer: Hume Winzar <winzar@gmail.com>
Diff between LikertMakeR versions 0.4.0 dated 2024-11-19 and 1.0.0 dated 2025-04-04
DESCRIPTION | 22 MD5 | 54 - NAMESPACE | 4 NEWS.md | 29 R/correlateScales.R | 5 R/lcor.R | 6 R/lexact.R | 9 R/lfast.R | 29 R/makeCorrAlpha.R | 25 R/makeCorrLoadings.R |only R/makeItems.R | 22 R/makeItemsScale.R | 54 - R/makePaired.R |only README.md | 277 +++++++-- build/vignette.rds |binary inst/CITATION | 8 inst/doc/LikertMakeR_vignette.R | 55 + inst/doc/LikertMakeR_vignette.Rmd | 173 ++++- inst/doc/LikertMakeR_vignette.html | 997 +++++++++++++++++++-------------- man/correlateScales.Rd | 5 man/lcor.Rd | 3 man/lexact.Rd | 6 man/lfast.Rd | 18 man/makeCorrAlpha.Rd | 12 man/makeCorrLoadings.Rd |only man/makeItems.Rd | 8 man/makeItemsScale.Rd | 52 - man/makePaired.Rd |only tests/testthat/test-makeCorrLoadings.R |only tests/testthat/test-makePaired.R |only vignettes/LikertMakeR_vignette.Rmd | 173 ++++- 31 files changed, 1362 insertions(+), 684 deletions(-)
Title: Analogue and Weighted Averaging Methods for Palaeoecology
Description: Fits Modern Analogue Technique and Weighted Averaging transfer
function models for prediction of environmental data from species
data, and related methods used in palaeoecology.
Author: Gavin L. Simpson [aut, cre] ,
Jari Oksanen [aut],
Martin Maechler [ctb]
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Diff between analogue versions 0.17-7 dated 2024-09-21 and 0.18.0 dated 2025-04-04
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/vignette.rds |binary inst/NEWS | 19 +++++++++++++------ inst/doc/analogue_methods.pdf |binary tests/Examples/analogue-Ex.Rout.save | 7 +++---- 6 files changed, 25 insertions(+), 19 deletions(-)
Title: Workflows for Health Technology Assessments in R using Discrete
EveNts
Description: Toolkit to support and perform discrete event simulations without
resource constraints in the context of health technology assessments (HTA).
The package focuses on cost-effectiveness modelling and aims to be submission-ready
to relevant HTA bodies in alignment with 'NICE TSD 15'
<https://www.sheffield.ac.uk/nice-dsu/tsds/patient-level-simulation>.
More details an examples can be found in the package website <https://jsanchezalv.github.io/WARDEN/>.
Author: Javier Sanchez Alvarez [aut, cre],
Gabriel Lemyre [ctb],
Valerie Aponte Ribero [ctb]
Maintainer: Javier Sanchez Alvarez <javiersanchezeco@gmail.com>
Diff between WARDEN versions 0.99.1 dated 2024-12-13 and 0.99.3 dated 2025-04-04
DESCRIPTION | 7 - MD5 | 21 ++-- NAMESPACE | 1 NEWS.md | 16 ++- R/calculator_f.R | 34 +++++++ R/run_sim_parallel.R | 4 README.md | 10 +- inst/doc/example_ssd.R | 4 inst/doc/example_ssd.Rmd | 4 inst/doc/example_ssd.html | 216 +++++++++++++++++++++++----------------------- man/qgamma_mse.Rd |only vignettes/example_ssd.Rmd | 4 12 files changed, 184 insertions(+), 137 deletions(-)
Title: Co-Correspondence Analysis Methods
Description: Fits predictive and symmetric co-correspondence analysis (CoCA) models to relate one data matrix to another data matrix. More specifically, CoCA maximises the weighted covariance between the weighted averaged species scores of one community and the weighted averaged species scores of another community. CoCA attempts to find patterns that are common to both communities.
Author: Gavin L. Simpson [aut, cre, trl] ,
Cajo J.F. ter Braak [aut] ,
Andre P Schaffers [aut] ,
Ron Wehrens [aut] ),
Bjorn-Helge Mevik [aut] )
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Diff between cocorresp versions 0.4-5 dated 2024-10-06 and 0.4-6 dated 2025-04-04
DESCRIPTION | 9 +++++---- MD5 | 26 +++++++++++++------------- build/vignette.rds |binary inst/ChangeLog | 5 +++++ inst/doc/cocorresp-intro.html | 9 +++++---- man/bryophyte.Rd | 2 +- man/coca.Rd | 6 +++--- man/coinertiaI.Rd | 2 +- man/crossval.Rd | 4 ++-- man/envfit.coca.Rd | 4 ++-- man/rescale.Rd | 2 +- man/resid.symcoca.Rd | 2 +- man/weights.Rd | 2 +- tests/Examples/cocorresp-Ex.Rout.save | 7 +++---- 14 files changed, 43 insertions(+), 37 deletions(-)
Title: Annual Regional Database of the European Commission (ARDECO)
Description: A set of functions to access the 'ARDECO' (Annual Regional Database
of the European Commission) data directly from the official ARDECO public
repository through the exploitation of the 'ARDECO' APIs.
The APIs are completely transparent to the user and the provided functions
provide a direct access to the 'ARDECO' data.
The 'ARDECO' database is a collection of variables related to demography,
employment, labour market, domestic product, capital formation.
Each variable can be exposed in one or more units of measure as well as
refers to total values plus additional dimensions like economic sectors, gender,
age classes. Data can be also aggregated at country level according
to the tercet classes as defined by EUROSTAT.
The description of the 'ARDECO' database can be found at the following URL
<https://urban.jrc.ec.europa.eu/ardeco>.
Author: Carmelo Attardo [cre],
Giuseppe Bucciarelli [aut],
European Commission, JRC [cph]
Maintainer: Carmelo Attardo <carmelo.attardo@ec.europa.eu>
Diff between ARDECO versions 2.1.0 dated 2024-11-21 and 2.2.0 dated 2025-04-04
DESCRIPTION | 10 - MD5 | 22 +- NAMESPACE | 5 NEWS | 5 R/ardeco.R |only R/get_dataset_data.R | 357 ++++++++++++++++++++++++++++++++++++++++-------- R/get_dataset_list.R | 9 - R/get_tercet_list.R | 11 + build |only inst |only man/ardeco.Rd | 9 - man/get_dataset_data.Rd | 31 ++-- vignettes |only 13 files changed, 370 insertions(+), 89 deletions(-)
Title: Create Tables from Different Types of Regression
Description: Create regression tables from generalized linear model(GLM), generalized estimating equation(GEE), generalized linear mixed-effects model(GLMM), Cox proportional hazards model, survey-weighted generalized linear model(svyglm) and survey-weighted Cox model results for publication.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd],
Yoonkyoung Jeon [aut],
Jaehun Shon [aut],
Hyojong Myung [aut],
Hyungwoo Jo [aut],
Sungho Choi [aut]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between jstable versions 1.3.9 dated 2025-03-05 and 1.3.11 dated 2025-04-04
DESCRIPTION | 14 - MD5 | 57 ++-- NAMESPACE | 2 NEWS.md | 7 R/cox2.R | 132 ++++++++++- R/coxme.R | 84 ++++++- R/forestcox.R | 260 +++++++++++++++------- R/gee.R | 64 ++++- R/glmshow.R | 134 ++++++++++- R/lmer.R | 104 +++++++- R/svyCreateTableOneJS.R | 164 +++++++++++--- R/svycox.R | 74 +++++- R/svyglm.R | 151 +++++++++++- build/vignette.rds |binary inst/doc/jstable.html | 68 ++--- inst/doc/jstable_competing_risk_analysis.html | 4 inst/doc/jstable_options.html | 304 ++++++++++++-------------- man/ChangeSvyTable.Rd |only man/cox2.display.Rd | 4 man/coxme.display.Rd | 4 man/geeglm.display.Rd | 4 man/glmshow.display.Rd | 4 man/lmer.display.Rd | 4 man/svyCreateTableOne2.Rd | 5 man/svyCreateTableOneJS.Rd | 5 man/svycox.display.Rd | 4 man/svyglm.display.Rd | 4 tests/testthat/test-forestcox.R | 57 ++-- tests/testthat/test-regtable.R | 11 tests/testthat/test-svyCreateTableOne.R | 60 ++++- 30 files changed, 1342 insertions(+), 447 deletions(-)
Title: Ensemble-Based Data Assimilation with GR Hydrological Models
Description: Add-on to the 'airGR' package which provides the tools to assimilate observed discharges in daily GR hydrological models. The package consists in two functions allowing to perform the assimilation of observed discharges via the Ensemble Kalman filter or the Particle filter as described in Piazzi et al. (2021) <doi:10.1029/2020WR028390>.
Author: Gaia Piazzi [aut] ,
Olivier Delaigue [aut, cre] ,
Guillaume Thirel [ctb] ,
Maxime Logez [ctb]
Maintainer: Olivier Delaigue <airGR@inrae.fr>
Diff between airGRdatassim versions 0.1.3 dated 2021-02-11 and 0.1.4 dated 2025-04-04
airGRdatassim-0.1.3/airGRdatassim/man/airGRdatassim.Rd |only airGRdatassim-0.1.4/airGRdatassim/DESCRIPTION | 10 airGRdatassim-0.1.4/airGRdatassim/MD5 | 43 airGRdatassim-0.1.4/airGRdatassim/NAMESPACE | 54 airGRdatassim-0.1.4/airGRdatassim/NEWS.md |only airGRdatassim-0.1.4/airGRdatassim/R/CreateInputsPert.R | 374 +-- airGRdatassim-0.1.4/airGRdatassim/R/DA_EnKF.R | 256 +- airGRdatassim-0.1.4/airGRdatassim/R/DA_PF.R | 370 +-- airGRdatassim-0.1.4/airGRdatassim/R/RunModel_DA.R | 758 +++--- airGRdatassim-0.1.4/airGRdatassim/R/Utils.R | 48 airGRdatassim-0.1.4/airGRdatassim/R/plot.InputsPert.R | 142 - airGRdatassim-0.1.4/airGRdatassim/R/plot.OutputsModelDA.R | 128 - airGRdatassim-0.1.4/airGRdatassim/README.md | 135 - airGRdatassim-0.1.4/airGRdatassim/build/partial.rdb |binary airGRdatassim-0.1.4/airGRdatassim/build/vignette.rds |binary airGRdatassim-0.1.4/airGRdatassim/inst/CITATION | 80 airGRdatassim-0.1.4/airGRdatassim/inst/doc/get_started.R | 266 +- airGRdatassim-0.1.4/airGRdatassim/inst/doc/get_started.Rmd | 610 ++--- airGRdatassim-0.1.4/airGRdatassim/inst/doc/get_started.html | 1133 ++++++---- airGRdatassim-0.1.4/airGRdatassim/man/CreateInputsPert.Rd | 295 +- airGRdatassim-0.1.4/airGRdatassim/man/RunModel_DA.Rd | 371 +-- airGRdatassim-0.1.4/airGRdatassim/man/airGRdatassim-package.Rd |only airGRdatassim-0.1.4/airGRdatassim/vignettes/airgrdatassim_use.bib | 136 - airGRdatassim-0.1.4/airGRdatassim/vignettes/get_started.Rmd | 610 ++--- 24 files changed, 3098 insertions(+), 2721 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-10-25 0.2.0
Title: Knowledge Space Theory Input/Output
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstIO' package
provides basic functionalities to read and write KST data from/to
files to be used together with the 'kst', 'kstMatrix', 'CDSS', 'pks', or
'DAKS' packages.
Author: Cord Hockemeyer [aut, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstIO versions 0.4-1 dated 2025-01-20 and 0.4-2 dated 2025-04-04
Changelog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- R/write_kbase.R | 1 + R/write_kdata.R | 1 + R/write_kspace.R | 1 + R/write_kstructure.R | 1 + build/vignette.rds |binary inst/doc/kstIO.pdf |binary 9 files changed, 19 insertions(+), 12 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-19 0.3.9
2025-03-18 0.3.8
2024-04-24 0.3.6
2024-04-22 0.3.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-11-03 1.2.7
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-11-06 0.2.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-27 2.1-1
2021-10-08 2.1-0
2020-03-10 2.0-1
2019-10-01 2.0-0
2018-09-19 1.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-10-13 0.11.1
2021-02-24 0.11.0
2020-10-31 0.10.8
2020-03-20 0.10.7
2019-02-03 0.10.6
2018-07-09 0.10.5
2016-10-24 0.10.4
2016-03-29 0.10.2
2016-01-11 0.10.0
2015-06-01 0.9.5
2015-05-27 0.9.4
2014-12-02 0.9.3
Title: Shortest Paths Between Points in Grids
Description: Shortest paths between points in grids. Optional barriers and custom transition functions. Applications regarding planet Earth, as well as
generally spheres and planes. Optimized for computational performance, customizability, and user friendliness. Graph-theoretical implementation tailored
to gridded data. Currently focused on Dijkstra's (1959) <doi:10.1007/BF01386390> algorithm. Future updates broaden the scope to other least cost path
algorithms and to centrality measures.
Author: Christian Dueben [aut, cre]
Maintainer: Christian Dueben <cdueben.ml+cran@proton.me>
Diff between spaths versions 1.1.3 dated 2024-07-11 and 1.2.0 dated 2025-04-04
spaths-1.1.3/spaths/src/coordinates.cpp |only spaths-1.1.3/spaths/src/distances_multiple_calls_woweights.cpp |only spaths-1.1.3/spaths/src/distances_multiple_calls_wweights.cpp |only spaths-1.1.3/spaths/src/distances_one_call_woweights.cpp |only spaths-1.1.3/spaths/src/distances_one_call_wweights.cpp |only spaths-1.1.3/spaths/src/distances_woweights.cpp |only spaths-1.1.3/spaths/src/distances_wweights.cpp |only spaths-1.1.3/spaths/src/pair_types.h |only spaths-1.1.3/spaths/src/paths_multiple_calls_woweights.cpp |only spaths-1.1.3/spaths/src/paths_multiple_calls_wweights.cpp |only spaths-1.1.3/spaths/src/paths_one_call_woweights.cpp |only spaths-1.1.3/spaths/src/paths_one_call_wweights.cpp |only spaths-1.1.3/spaths/src/paths_woweights.cpp |only spaths-1.1.3/spaths/src/paths_wweights.cpp |only spaths-1.1.3/spaths/src/repeat_distances.cpp |only spaths-1.1.3/spaths/src/stat_target_distances.cpp |only spaths-1.1.3/spaths/src/stat_target_paths.cpp |only spaths-1.1.3/spaths/src/upd_affected_paths.cpp |only spaths-1.1.3/spaths/src/upd_distances_woweights.cpp |only spaths-1.1.3/spaths/src/upd_distances_wweights.cpp |only spaths-1.1.3/spaths/src/upd_paths_woweights.cpp |only spaths-1.1.3/spaths/src/upd_paths_wweights.cpp |only spaths-1.1.3/spaths/src/upd_starts_targets.cpp |only spaths-1.1.3/spaths/src/upd_starts_targets_map.cpp |only spaths-1.1.3/spaths/src/upd_target_distances.cpp |only spaths-1.1.3/spaths/src/upd_target_paths.cpp |only spaths-1.1.3/spaths/src/visited.cpp |only spaths-1.2.0/spaths/DESCRIPTION | 8 spaths-1.2.0/spaths/MD5 | 156 - spaths-1.2.0/spaths/NAMESPACE | 19 spaths-1.2.0/spaths/NEWS.md | 54 spaths-1.2.0/spaths/R/RcppExports.R | 136 - spaths-1.2.0/spaths/R/max_edges.R |only spaths-1.2.0/spaths/R/rnd_locations.R | 108 spaths-1.2.0/spaths/R/shortest_paths.R | 474 ++-- spaths-1.2.0/spaths/R/utils.R | 297 +- spaths-1.2.0/spaths/build/vignette.rds |binary spaths-1.2.0/spaths/inst/doc/spaths_introduction.R | 426 +-- spaths-1.2.0/spaths/inst/doc/spaths_introduction.Rmd | 33 spaths-1.2.0/spaths/inst/doc/spaths_introduction.html | 475 +--- spaths-1.2.0/spaths/inst/doc/transition_functions.R |only spaths-1.2.0/spaths/inst/doc/transition_functions.Rmd |only spaths-1.2.0/spaths/inst/doc/transition_functions.html |only spaths-1.2.0/spaths/inst/include |only spaths-1.2.0/spaths/man/max_edges.Rd |only spaths-1.2.0/spaths/man/rnd_locations.Rd | 3 spaths-1.2.0/spaths/man/shortest_paths.Rd | 248 +- spaths-1.2.0/spaths/src/RcppExports.cpp | 439 +++ spaths-1.2.0/spaths/src/convert_upd_rst.cpp | 22 spaths-1.2.0/spaths/src/coordinates.h | 169 + spaths-1.2.0/spaths/src/distances_multiple_calls_woweights.h | 185 - 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spaths-1.2.0/spaths/src/target_paths.h | 144 - spaths-1.2.0/spaths/src/targets_set.h | 46 spaths-1.2.0/spaths/src/upd_affected_paths.h | 61 spaths-1.2.0/spaths/src/upd_distances_woweights.h | 174 + spaths-1.2.0/spaths/src/upd_distances_wweights.h | 174 + spaths-1.2.0/spaths/src/upd_paths_woweights.h | 158 + spaths-1.2.0/spaths/src/upd_paths_wweights.h | 155 - spaths-1.2.0/spaths/src/upd_starts_targets.h | 133 - spaths-1.2.0/spaths/src/upd_starts_targets_map.h | 56 spaths-1.2.0/spaths/src/upd_target_distances.h | 46 spaths-1.2.0/spaths/src/upd_target_paths.h | 64 spaths-1.2.0/spaths/src/visited.h | 14 spaths-1.2.0/spaths/tests/testthat/test-max_edges.R |only spaths-1.2.0/spaths/vignettes/spaths_introduction.Rmd | 33 spaths-1.2.0/spaths/vignettes/transition_functions.Rmd |only 99 files changed, 4547 insertions(+), 3471 deletions(-)
Title: Mixed GAM Computation Vehicle with Automatic Smoothness
Estimation
Description: Generalized additive (mixed) models, some of their extensions and
other generalized ridge regression with multiple smoothing
parameter estimation by (Restricted) Marginal Likelihood,
Generalized Cross Validation and similar, or using iterated
nested Laplace approximation for fully Bayesian inference. See
Wood (2017) <doi:10.1201/9781315370279> for an overview.
Includes a gam() function, a wide variety of smoothers, 'JAGS'
support and distributions beyond the exponential family.
Author: Simon Wood [aut, cre]
Maintainer: Simon Wood <simon.wood@r-project.org>
Diff between mgcv versions 1.9-2 dated 2025-04-02 and 1.9-3 dated 2025-04-04
ChangeLog | 5 +++++ DESCRIPTION | 6 +++--- MD5 | 8 ++++---- src/qp.c | 8 ++++---- src/sparse.c | 4 ++-- 5 files changed, 18 insertions(+), 13 deletions(-)
Title: Lightweight Access to the 'Geospatial Data Abstraction Library'
('GDAL')
Description: Provides low-level access to 'GDAL' functionality.
'GDAL' is the 'Geospatial Data Abstraction Library' a translator for raster and vector geospatial data formats
that presents a single raster abstract data model and single vector abstract data model to the calling application
for all supported formats <https://gdal.org/>. This package is focussed on providing exactly and only what GDAL does, to enable
developing further tools.
Author: Michael Sumner [aut, cre] ,
Simon Wotherspoon [ctb] ,
Mark Padgham [ctb] ),
Edzer Pebesma [ctb] ,
Roger Bivand [ctb] ,
Jim Hester [ctb, cph] ,
Timothy Keitt [ctb] ,
Jeroen Ooms [ctb] ,
Dale Maschette [ctb] ,
Joseph Stachelek [ctb],
Even Rouault [ctb] [...truncated...]
Maintainer: Michael Sumner <mdsumner@gmail.com>
Diff between vapour versions 0.10.0 dated 2024-06-14 and 0.11.0 dated 2025-04-04
vapour-0.10.0/vapour/src/warpscratch.cpp |only vapour-0.11.0/vapour/DESCRIPTION | 13 vapour-0.11.0/vapour/MD5 | 69 vapour-0.11.0/vapour/NEWS.md | 4 vapour-0.11.0/vapour/R/RcppExports.R | 4 vapour-0.11.0/vapour/R/raster-info.R | 4 vapour-0.11.0/vapour/R/raster-input.R | 8 vapour-0.11.0/vapour/R/read_stream_internal.R | 109 vapour-0.11.0/vapour/R/vapour-gdal-library.R | 6 vapour-0.11.0/vapour/R/vapour-package.R | 6 vapour-0.11.0/vapour/R/vapour_input_attributes.R | 2 vapour-0.11.0/vapour/R/vapour_vrt.R | 2 vapour-0.11.0/vapour/R/vapour_vsi_list.R | 2 vapour-0.11.0/vapour/README.md | 12 vapour-0.11.0/vapour/build/vignette.rds |binary vapour-0.11.0/vapour/configure | 2700 ++++------ vapour-0.11.0/vapour/configure.ac | 9 vapour-0.11.0/vapour/inst/WORDLIST | 2 vapour-0.11.0/vapour/inst/doc/feature-access.html | 2 vapour-0.11.0/vapour/inst/doc/vapour.Rmd | 4 vapour-0.11.0/vapour/inst/doc/vapour.html | 618 +- vapour-0.11.0/vapour/inst/include/gdalarrowstream/gdalvectorstream.h | 652 +- vapour-0.11.0/vapour/man/vapour-package.Rd | 4 vapour-0.11.0/vapour/man/vapour_geolocation.Rd | 2 vapour-0.11.0/vapour/man/vapour_geom_summary.Rd | 2 vapour-0.11.0/vapour/man/vapour_raster_info.Rd | 2 vapour-0.11.0/vapour/man/vapour_report_fields.Rd | 2 vapour-0.11.0/vapour/man/vapour_set_config.Rd | 2 vapour-0.11.0/vapour/man/vapour_srs_wkt.Rd | 2 vapour-0.11.0/vapour/man/vapour_vrt.Rd | 2 vapour-0.11.0/vapour/man/vapour_vsi_list.Rd | 2 vapour-0.11.0/vapour/man/vapour_warp_raster.Rd | 8 vapour-0.11.0/vapour/src/000-stream.cpp | 32 vapour-0.11.0/vapour/src/RcppExports.cpp | 22 vapour-0.11.0/vapour/tests/testthat/test-crs-less-warp.R | 5 vapour-0.11.0/vapour/vignettes/vapour.Rmd | 4 36 files changed, 2126 insertions(+), 2193 deletions(-)