Title: Working with the Neotoma Paleoecology Database
Description: Access and manipulation of data using the Neotoma Paleoecology Database.
<https://api.neotomadb.org/api-docs/>.
Author: Dominguez Vidana Socorro [aut, cre] ,
Simon Goring [aut]
Maintainer: Dominguez Vidana Socorro <s.dominguez@ht-data.com>
Diff between neotoma2 versions 1.0.6 dated 2025-06-25 and 1.0.7 dated 2025-07-14
neotoma2-1.0.6/neotoma2/R/check_args.R |only neotoma2-1.0.6/neotoma2/R/getids.r |only neotoma2-1.0.6/neotoma2/R/parse_body.R |only neotoma2-1.0.6/neotoma2/R/parse_location.R |only neotoma2-1.0.6/neotoma2/R/pingNeotoma.r |only neotoma2-1.0.6/neotoma2/R/specimen-methods.R |only neotoma2-1.0.6/neotoma2/R/specimens.R |only neotoma2-1.0.6/neotoma2/R/toJSON.R |only neotoma2-1.0.6/neotoma2/man/as.data.frame-specimen-method.Rd |only neotoma2-1.0.6/neotoma2/man/as.data.frame-specimens-method.Rd |only neotoma2-1.0.6/neotoma2/man/build_chron.Rd |only neotoma2-1.0.6/neotoma2/man/build_collunits.Rd |only neotoma2-1.0.6/neotoma2/man/build_dataset.Rd |only neotoma2-1.0.6/neotoma2/man/build_sample.Rd |only neotoma2-1.0.6/neotoma2/man/build_sites.Rd |only neotoma2-1.0.6/neotoma2/man/c-specimens-method.Rd |only neotoma2-1.0.6/neotoma2/man/cash-set-specimen-method.Rd |only neotoma2-1.0.6/neotoma2/man/cash-specimen-method.Rd |only neotoma2-1.0.6/neotoma2/man/cash-specimens-method.Rd |only neotoma2-1.0.6/neotoma2/man/check_args.Rd |only neotoma2-1.0.6/neotoma2/man/get_downloads.character.Rd |only neotoma2-1.0.6/neotoma2/man/get_sites.sites.Rd |only neotoma2-1.0.6/neotoma2/man/get_specimens.Rd |only neotoma2-1.0.6/neotoma2/man/get_specimens.default.Rd |only neotoma2-1.0.6/neotoma2/man/get_specimens.numeric.Rd |only neotoma2-1.0.6/neotoma2/man/get_specimens.sites.Rd |only neotoma2-1.0.6/neotoma2/man/length-specimens-method.Rd |only neotoma2-1.0.6/neotoma2/man/names-specimen-method.Rd |only neotoma2-1.0.6/neotoma2/man/newURL.Rd |only neotoma2-1.0.6/neotoma2/man/parseURL.Rd |only neotoma2-1.0.6/neotoma2/man/parse_site.Rd |only neotoma2-1.0.6/neotoma2/man/parsebody.Rd |only neotoma2-1.0.6/neotoma2/man/show-specimen-method.Rd |only neotoma2-1.0.6/neotoma2/man/show-specimens-method.Rd |only neotoma2-1.0.6/neotoma2/man/specimens-collunit-method.Rd |only neotoma2-1.0.6/neotoma2/man/specimens-collunits-method.Rd |only neotoma2-1.0.6/neotoma2/man/specimens-site-method.Rd |only neotoma2-1.0.6/neotoma2/man/specimens-sites-method.Rd |only neotoma2-1.0.6/neotoma2/man/specimens.Rd |only neotoma2-1.0.6/neotoma2/man/sub-specimens-numeric-method.Rd |only neotoma2-1.0.6/neotoma2/man/sub-sub-specimens-numeric-method.Rd |only neotoma2-1.0.6/neotoma2/man/sub-subset-specimens-ANY-ANY-ANY-method.Rd |only neotoma2-1.0.6/neotoma2/man/subset-specimen-character-ANY-ANY-method.Rd |only neotoma2-1.0.6/neotoma2/man/subset-specimen-numeric-ANY-ANY-method.Rd |only neotoma2-1.0.6/neotoma2/man/toJSON-sites-method.Rd |only neotoma2-1.0.6/neotoma2/man/toJSON.Rd |only neotoma2-1.0.6/neotoma2/man/write.csv-specimens-method.Rd |only neotoma2-1.0.7/neotoma2/DESCRIPTION | 14 neotoma2-1.0.7/neotoma2/MD5 | 192 +--- neotoma2-1.0.7/neotoma2/NAMESPACE | 19 neotoma2-1.0.7/neotoma2/NEWS.md | 10 neotoma2-1.0.7/neotoma2/R/01_classDefinitions.R | 42 - neotoma2-1.0.7/neotoma2/R/02_genericDefinitions.R | 36 neotoma2-1.0.7/neotoma2/R/build_chron.R | 107 +- neotoma2-1.0.7/neotoma2/R/build_collunit.R | 71 - neotoma2-1.0.7/neotoma2/R/build_dataset.R | 47 - neotoma2-1.0.7/neotoma2/R/build_sample.R | 6 neotoma2-1.0.7/neotoma2/R/build_site.R | 85 -- neotoma2-1.0.7/neotoma2/R/chronology-methods.R | 4 neotoma2-1.0.7/neotoma2/R/cleanNULL.R | 22 neotoma2-1.0.7/neotoma2/R/dataset-methods.R | 6 neotoma2-1.0.7/neotoma2/R/filter.R | 12 neotoma2-1.0.7/neotoma2/R/get0_params.R |only neotoma2-1.0.7/neotoma2/R/get_datasets.R | 273 +------ neotoma2-1.0.7/neotoma2/R/get_downloads.R | 161 ---- neotoma2-1.0.7/neotoma2/R/get_publications.R | 68 - neotoma2-1.0.7/neotoma2/R/get_sites.R | 202 ----- neotoma2-1.0.7/neotoma2/R/get_specimens.R | 44 - neotoma2-1.0.7/neotoma2/R/get_stats.R | 4 neotoma2-1.0.7/neotoma2/R/get_table.R | 9 neotoma2-1.0.7/neotoma2/R/get_taxon.R | 11 neotoma2-1.0.7/neotoma2/R/getids.R |only neotoma2-1.0.7/neotoma2/R/group_data.R |only neotoma2-1.0.7/neotoma2/R/parseLocation.R |only neotoma2-1.0.7/neotoma2/R/parseURL.R | 387 +++------- neotoma2-1.0.7/neotoma2/R/parse_site.R |only neotoma2-1.0.7/neotoma2/R/pingNeotoma.R |only neotoma2-1.0.7/neotoma2/R/publication-methods.R | 1 neotoma2-1.0.7/neotoma2/R/samples-methods.R | 45 + neotoma2-1.0.7/neotoma2/R/samples.R | 6 neotoma2-1.0.7/neotoma2/R/set_chronology.R | 56 - neotoma2-1.0.7/neotoma2/R/set_collunit.R | 7 neotoma2-1.0.7/neotoma2/R/set_contacts.R | 3 neotoma2-1.0.7/neotoma2/R/set_dataset.R | 13 neotoma2-1.0.7/neotoma2/R/set_sample.R | 3 neotoma2-1.0.7/neotoma2/R/set_site.R | 5 neotoma2-1.0.7/neotoma2/R/site-methods.R | 12 neotoma2-1.0.7/neotoma2/R/testNull.R | 4 neotoma2-1.0.7/neotoma2/R/use_na.R | 29 neotoma2-1.0.7/neotoma2/inst/doc/neotoma2-package.R | 63 - neotoma2-1.0.7/neotoma2/inst/doc/neotoma2-package.Rmd | 63 - neotoma2-1.0.7/neotoma2/inst/doc/neotoma2-package.html | 145 +-- neotoma2-1.0.7/neotoma2/man/c-samples-method.Rd |only neotoma2-1.0.7/neotoma2/man/filter.sites.Rd | 2 neotoma2-1.0.7/neotoma2/man/get_datasets.Rd | 2 neotoma2-1.0.7/neotoma2/man/get_datasets.default.Rd | 17 neotoma2-1.0.7/neotoma2/man/get_downloads.Rd | 2 neotoma2-1.0.7/neotoma2/man/get_downloads.numeric.Rd | 4 neotoma2-1.0.7/neotoma2/man/get_publications.publication.Rd | 2 neotoma2-1.0.7/neotoma2/man/get_publications.publications.Rd | 2 neotoma2-1.0.7/neotoma2/man/get_sites.Rd | 10 neotoma2-1.0.7/neotoma2/man/get_sites.default.Rd | 2 neotoma2-1.0.7/neotoma2/man/get_stats.Rd | 2 neotoma2-1.0.7/neotoma2/man/getids.Rd | 2 neotoma2-1.0.7/neotoma2/man/getids.collunit.Rd | 2 neotoma2-1.0.7/neotoma2/man/getids.collunits.Rd | 2 neotoma2-1.0.7/neotoma2/man/getids.site.Rd | 2 neotoma2-1.0.7/neotoma2/man/getids.sites.Rd | 2 neotoma2-1.0.7/neotoma2/man/pingNeotoma.Rd | 2 neotoma2-1.0.7/neotoma2/man/plotLeaflet.Rd | 2 neotoma2-1.0.7/neotoma2/man/set_collunit.Rd | 4 neotoma2-1.0.7/neotoma2/man/set_dataset.Rd | 11 neotoma2-1.0.7/neotoma2/man/set_site.Rd | 2 neotoma2-1.0.7/neotoma2/man/sub-subset-samples-ANY-ANY-ANY-method.Rd |only neotoma2-1.0.7/neotoma2/man/subset-sample-character-ANY-ANY-method.Rd |only neotoma2-1.0.7/neotoma2/tests/testthat/test-parse_location.R | 24 neotoma2-1.0.7/neotoma2/tests/testthat/test-set_server.R | 2 neotoma2-1.0.7/neotoma2/tests/testthat/test-toJSON.R | 27 neotoma2-1.0.7/neotoma2/tests/testthat/test_chroncontrols.R | 7 neotoma2-1.0.7/neotoma2/tests/testthat/test_datasets.R | 2 neotoma2-1.0.7/neotoma2/tests/testthat/test_download.R | 4 neotoma2-1.0.7/neotoma2/tests/testthat/test_generaltests.R | 39 - neotoma2-1.0.7/neotoma2/tests/testthat/test_sites.R | 54 - neotoma2-1.0.7/neotoma2/tests/testthat/test_specimens.R | 6 neotoma2-1.0.7/neotoma2/vignettes/neotoma2-package.Rmd | 63 - 125 files changed, 909 insertions(+), 1682 deletions(-)
Title: Bayesian Geostatistics Using Predictive Stacking
Description: Fits Bayesian hierarchical spatial and spatial-temporal process
models for point-referenced Gaussian, Poisson, binomial, and binary data
using stacking of predictive densities. It involves sampling from
analytically available posterior distributions conditional upon candidate
values of the spatial process parameters and, subsequently assimilate
inference from these individual posterior distributions using Bayesian
predictive stacking. Our algorithm is highly parallelizable and hence, much
faster than traditional Markov chain Monte Carlo algorithms while delivering
competitive predictive performance. See Zhang, Tang, and Banerjee (2025)
<doi:10.48550/arXiv.2304.12414>, and, Pan, Zhang, Bradley, and Banerjee
(2025) <doi:10.48550/arXiv.2406.04655> for details.
Author: Soumyakanti Pan [aut, cre] ,
Sudipto Banerjee [aut]
Maintainer: Soumyakanti Pan <span18@ucla.edu>
Diff between spStack versions 1.1.0 dated 2025-07-11 and 1.1.1 dated 2025-07-14
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 10 +++++++--- inst/doc/spatial.html | 4 ++-- src/util.cpp | 14 ++++---------- 5 files changed, 20 insertions(+), 22 deletions(-)
Title: Parallel Low-Rank Approximation with Nonnegativity Constraints
Description: 'Rcpp' bindings for 'PLANC', a highly parallel
and extensible NMF/NTF (Non-negative Matrix/Tensor Factorization) library.
Wraps algorithms described in
Kannan et. al (2018) <doi:10.1109/TKDE.2017.2767592> and
Eswar et. al (2021) <doi:10.1145/3432185>.
Implements algorithms described in
Welch et al. (2019) <doi:10.1016/j.cell.2019.05.006>,
Gao et al. (2021) <doi:10.1038/s41587-021-00867-x>, and
Kriebel & Welch (2022) <doi:10.1038/s41467-022-28431-4>.
Author: Andrew Robbins [aut, cre] ,
Yichen Wang [aut],
Joshua Welch [cph] ,
Ramakrishnan Kannan [cph] ,
Conrad Sanderson [cph] ,
Blue Brain Project/EPFL [cph] ,
UT-Batelle [cph]
Maintainer: Andrew Robbins <robbiand@umich.edu>
Diff between RcppPlanc versions 2.0.12 dated 2025-05-29 and 2.0.13 dated 2025-07-14
DESCRIPTION | 10 MD5 | 30 - NEWS.md | 6 README.md | 36 +- build/vignette.rds |binary configure | 1 inst/doc/RcppPlanc.html | 10 src/planc/CMakeLists.txt | 61 ++- src/planc/common/progressWrapper.cpp | 9 src/planc/common/progressWrapper.h | 4 src/planc/nmf/NMFDriver.hpp | 2 src/planc/pyproject.toml | 9 tools/patches/00_remove_stdio.patch | 500 +++++++++++++--------------- tools/patches/01_remove_sprintf.patch | 196 ++++------ tools/patches/02_adjust_windows_types.patch | 14 tools/patches/03_remove_abort.patch | 47 -- 16 files changed, 454 insertions(+), 481 deletions(-)
Title: A Centralized Metadata Object Focus on Clinical Trial Data
Programming Workflows
Description: Create an immutable container holding metadata for the
purpose of better enabling programming activities and functionality of
other packages within the clinical programming workflow.
Author: Liam Hobby [aut, cre],
Christina Fillmore [aut] ,
Bill Denney [aut],
Maya Gans [aut] ,
Ashley Tarasiewicz [aut],
Mike Stackhouse [aut] ,
Tamara Senior [aut],
GSK/Atorus JPT [cph, fnd]
Maintainer: Liam Hobby <liam.f.hobby@gsk.com>
Diff between metacore versions 0.1.3 dated 2024-05-02 and 0.2.0 dated 2025-07-14
metacore-0.1.3/metacore/inst/extdata/ADaM_define.xml |only metacore-0.2.0/metacore/DESCRIPTION | 74 metacore-0.2.0/metacore/LICENSE | 4 metacore-0.2.0/metacore/MD5 | 131 metacore-0.2.0/metacore/NAMESPACE | 247 metacore-0.2.0/metacore/NEWS.md | 105 metacore-0.2.0/metacore/R/DatasetMeta.R |only metacore-0.2.0/metacore/R/checks.R | 172 metacore-0.2.0/metacore/R/metacore.R | 1066 - metacore-0.2.0/metacore/R/spec_builder.R | 1557 - metacore-0.2.0/metacore/R/utils-pipe.R | 22 metacore-0.2.0/metacore/R/utils.R | 248 metacore-0.2.0/metacore/R/validators.R | 750 metacore-0.2.0/metacore/R/xml_builders.R | 831 metacore-0.2.0/metacore/R/xml_helpers.R | 58 metacore-0.2.0/metacore/R/zzz.R | 81 metacore-0.2.0/metacore/README.md | 451 metacore-0.2.0/metacore/build/vignette.rds |binary metacore-0.2.0/metacore/inst/doc/Building_Specification_Readers.R | 206 metacore-0.2.0/metacore/inst/doc/Building_Specification_Readers.Rmd | 476 metacore-0.2.0/metacore/inst/doc/Building_Specification_Readers.html | 1894 -- metacore-0.2.0/metacore/inst/doc/Example.R | 72 metacore-0.2.0/metacore/inst/doc/Example.Rmd | 132 metacore-0.2.0/metacore/inst/doc/Example.html | 905 - metacore-0.2.0/metacore/inst/extdata/ADaM_define_CDISC_pilot3.xml |only metacore-0.2.0/metacore/inst/extdata/SDTM_define.xml | 4228 ++-- metacore-0.2.0/metacore/inst/extdata/pilot_ADaM.rda |binary metacore-0.2.0/metacore/man/MetaCore_filter.Rd | 28 metacore-0.2.0/metacore/man/check_columns.Rd | 68 metacore-0.2.0/metacore/man/check_structure.Rd | 44 metacore-0.2.0/metacore/man/check_words.Rd | 32 metacore-0.2.0/metacore/man/checks.Rd | 88 metacore-0.2.0/metacore/man/create_tbl.Rd | 44 metacore-0.2.0/metacore/man/define_to_metacore.Rd | 38 metacore-0.2.0/metacore/man/get_control_term.Rd | 64 metacore-0.2.0/metacore/man/get_keys.Rd | 52 metacore-0.2.0/metacore/man/is_DatasetMeta.Rd |only metacore-0.2.0/metacore/man/is_metacore.Rd | 46 metacore-0.2.0/metacore/man/load_metacore.Rd | 34 metacore-0.2.0/metacore/man/metacore.Rd | 86 metacore-0.2.0/metacore/man/metacore_example.Rd | 42 metacore-0.2.0/metacore/man/pipe.Rd | 24 metacore-0.2.0/metacore/man/read_all_sheets.Rd | 34 metacore-0.2.0/metacore/man/save_metacore.Rd | 38 metacore-0.2.0/metacore/man/select_dataset.Rd | 45 metacore-0.2.0/metacore/man/spec_to_metacore.Rd | 52 metacore-0.2.0/metacore/man/spec_type.Rd | 34 metacore-0.2.0/metacore/man/spec_type_to_codelist.Rd | 114 metacore-0.2.0/metacore/man/spec_type_to_derivations.Rd | 92 metacore-0.2.0/metacore/man/spec_type_to_ds_spec.Rd | 78 metacore-0.2.0/metacore/man/spec_type_to_ds_vars.Rd | 98 metacore-0.2.0/metacore/man/spec_type_to_value_spec.Rd | 116 metacore-0.2.0/metacore/man/spec_type_to_var_spec.Rd | 80 metacore-0.2.0/metacore/man/verify_DatasetMeta.Rd |only metacore-0.2.0/metacore/man/xml_to_codelist.Rd | 58 metacore-0.2.0/metacore/man/xml_to_derivations.Rd | 54 metacore-0.2.0/metacore/man/xml_to_ds_spec.Rd | 52 metacore-0.2.0/metacore/man/xml_to_ds_vars.Rd | 52 metacore-0.2.0/metacore/man/xml_to_value_spec.Rd | 56 metacore-0.2.0/metacore/man/xml_to_var_spec.Rd | 56 metacore-0.2.0/metacore/tests/testthat.R | 8 metacore-0.2.0/metacore/tests/testthat/define-2021.xml | 4226 ++-- metacore-0.2.0/metacore/tests/testthat/define2-0-0.xsl | 8592 +++++----- metacore-0.2.0/metacore/tests/testthat/test-checks.R | 89 metacore-0.2.0/metacore/tests/testthat/test-metacore.R | 308 metacore-0.2.0/metacore/tests/testthat/test-utils.R | 106 metacore-0.2.0/metacore/tests/testthat/test-validators.R | 236 metacore-0.2.0/metacore/vignettes/Building_Specification_Readers.Rmd | 476 metacore-0.2.0/metacore/vignettes/Example.Rmd | 132 69 files changed, 14838 insertions(+), 14844 deletions(-)
Title: Estimating Length-Based Indicators for Fish Stock
Description: Provides tools for estimating length-based indicators from length frequency data to assess fish stock status and manage fisheries sustainably. Implements methods from Cope and Punt (2009) <doi:10.1577/C08-025.1> for data-limited stock assessment and Froese (2004) <doi:10.1111/j.1467-2979.2004.00144.x> for detecting overfishing using simple indicators. Key functions include:
FrequencyTable(): Calculate the frequency table from the collected and also the extract the length frequency data from the frequency table with the upper length_range. A numeric value specifying the bin width for class intervals. If not provided, the bin width is automatically calculated using Sturges (1926) <doi:10.1080/01621459.1926.10502161> formula.
CalPar(): Calculates various lengths used in fish stock assessment as biological length indicators such as asymptotic length (Linf), maximum length (Lmax), length at sexual maturity (Lm), and optimal length (Lopt).
FishPar(): Calculates length-based [...truncated...]
Author: Ataher Ali [aut, cre],
Mohammed Shahidul Alam [aut]
Maintainer: Ataher Ali <ataher.cu.ms@gmail.com>
Diff between aLBI versions 0.1.7 dated 2024-11-21 and 0.1.8 dated 2025-07-14
DESCRIPTION | 15 MD5 | 39 +- NAMESPACE | 17 + R/DataDescription.R | 84 +++-- R/FishPar.R | 631 ++++++++++++++++++++++------------------ R/FishSS.R | 2 R/FrequencyTable.R | 128 ++++---- R/LWR.R |only build/vignette.rds |binary data/LWdata.rda |only inst/doc/Introduction.R | 53 +++ inst/doc/Introduction.Rmd | 146 +++++++-- inst/doc/Introduction.html | 704 ++++++++++++++++++++++++++++----------------- inst/exdata/LWdata.xlsx |only man/CPdata.Rd | 28 - man/ExData.Rd | 10 man/FishPar.Rd | 31 + man/FrequencyTable.Rd | 44 +- man/LWR.Rd |only man/LWdata.Rd |only man/lenfreq01.Rd | 10 man/lenfreq02.Rd | 10 vignettes/Introduction.Rmd | 146 +++++++-- 23 files changed, 1314 insertions(+), 784 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-03-17 0.2.1
2021-07-08 0.1.2
2021-03-30 0.1.0
2020-10-30 0.0.2
Title: Speaker Recognition, Voice Analysis and Mood Inference via Music
Theory
Description: Provides tools for audio data analysis, including feature extraction, pitch detection, and speaker identification. Designed for voice research and signal processing applications.
Author: Zabala Filipe J. [cre, aut]
Maintainer: Zabala Filipe J. <filipezabala@gmail.com>
Diff between voice versions 0.4.21 dated 2023-04-19 and 0.5.4 dated 2025-07-14
voice-0.4.21/voice/inst/doc/voicegnette_R.R |only voice-0.4.21/voice/inst/doc/voicegnette_R.Rmd |only voice-0.4.21/voice/inst/doc/voicegnette_R.html |only voice-0.4.21/voice/vignettes/index_2021-08-15.html |only voice-0.4.21/voice/vignettes/index_2021-09-03.html |only voice-0.4.21/voice/vignettes/index_2021-09-16_143012.html |only voice-0.4.21/voice/vignettes/index_2021-09-17_000220.html |only voice-0.4.21/voice/vignettes/index_2021-11-08.html |only voice-0.4.21/voice/vignettes/index_2022-09-07.html |only voice-0.4.21/voice/vignettes/index_2022-09-14.html |only voice-0.4.21/voice/vignettes/musescore.png |only voice-0.4.21/voice/vignettes/rttm.png |only voice-0.4.21/voice/vignettes/split.png |only voice-0.4.21/voice/vignettes/test.WAV |only voice-0.4.21/voice/vignettes/vignettes_old.zip |only voice-0.4.21/voice/vignettes/voicegnette_R.Rmd |only voice-0.5.4/voice/DESCRIPTION | 27 voice-0.5.4/voice/MD5 | 81 - voice-0.5.4/voice/NAMESPACE | 12 voice-0.5.4/voice/NEWS.md | 920 +++++++------- voice-0.5.4/voice/R/assign_notes.R |only voice-0.5.4/voice/R/check_chords.R |only voice-0.5.4/voice/R/cut_audio.R |only voice-0.5.4/voice/R/diarize.R | 11 voice-0.5.4/voice/R/embed_media.R |only voice-0.5.4/voice/R/extract_features.R | 22 voice-0.5.4/voice/R/media_files.R |only voice-0.5.4/voice/R/notes.R | 18 voice-0.5.4/voice/R/notes_freq.R | 2 voice-0.5.4/voice/R/piano_plot.R |only voice-0.5.4/voice/R/splitw.R | 2 voice-0.5.4/voice/R/spn2abc.R |only voice-0.5.4/voice/R/utils.R |only voice-0.5.4/voice/README.md | 326 ---- voice-0.5.4/voice/build/partial.rdb |binary voice-0.5.4/voice/build/vignette.rds |binary voice-0.5.4/voice/inst/doc/voicegnette_CRAN.R |only voice-0.5.4/voice/inst/doc/voicegnette_CRAN.Rmd |only voice-0.5.4/voice/inst/doc/voicegnette_CRAN.html |only voice-0.5.4/voice/inst/media |only voice-0.5.4/voice/man/assign_notes.Rd |only voice-0.5.4/voice/man/check_chords.Rd |only voice-0.5.4/voice/man/cut_audio.Rd |only voice-0.5.4/voice/man/diarize.Rd | 9 voice-0.5.4/voice/man/embed_audio.Rd |only voice-0.5.4/voice/man/embed_video.Rd |only voice-0.5.4/voice/man/extract_features.Rd | 19 voice-0.5.4/voice/man/is.audio.Rd |only voice-0.5.4/voice/man/is.hosted.Rd |only voice-0.5.4/voice/man/is.local.Rd |only voice-0.5.4/voice/man/is.url.Rd |only voice-0.5.4/voice/man/is.video.Rd |only voice-0.5.4/voice/man/media-files.Rd |only voice-0.5.4/voice/man/notes.Rd | 2 voice-0.5.4/voice/man/notes_freq.Rd | 2 voice-0.5.4/voice/man/piano_plot.Rd |only voice-0.5.4/voice/man/spn2abc.Rd |only voice-0.5.4/voice/man/url.exists.Rd |only voice-0.5.4/voice/vignettes/img |only voice-0.5.4/voice/vignettes/index.html | 803 ++++++++---- voice-0.5.4/voice/vignettes/voicegnette_CRAN.Rmd |only 61 files changed, 1249 insertions(+), 1007 deletions(-)
Title: Truncated Harmonic Mean Estimator of the Marginal Likelihood
Description: Implements the truncated harmonic mean estimator (THAMES)
of the reciprocal marginal likelihood using posterior samples and
unnormalized log posterior values via reciprocal importance sampling.
Metodiev, Perrot-Dockès, Ouadah, Irons, Latouche, & Raftery (2024).
Bayesian Analysis. <doi:10.1214/24-BA1422>.
Author: Nicholas J. Irons [aut, cre] ,
Marie Perrot-Dockes [aut],
Martin Metodiev [aut]
Maintainer: Nicholas J. Irons <nicholasjonirons@gmail.com>
Diff between thames versions 0.1.1 dated 2023-10-27 and 0.1.2 dated 2025-07-14
DESCRIPTION | 20 +-- MD5 | 19 +-- NAMESPACE | 4 R/bound_par_cor.R | 3 R/thames.R | 7 - R/uniformly_functions.R |only build/vignette.rds |binary inst/doc/multivariate-gaussian.R | 2 inst/doc/multivariate-gaussian.html | 202 ++++++++++++++---------------------- man/runif_ellipsoid.Rd |only man/runif_sphere.Rd |only man/thames.Rd | 7 - 12 files changed, 118 insertions(+), 146 deletions(-)
Title: Bindings to 'GDAL'
Description: API bindings to the Geospatial Data Abstraction Library ('GDAL',
<https://gdal.org>). Implements the 'GDAL' Raster and Vector Data Models.
Bindings are implemented with 'Rcpp' modules. Exposed C++ classes and
stand-alone functions wrap much of the 'GDAL' API and provide additional
functionality. Calling signatures resemble the native C, C++ and Python APIs
provided by the 'GDAL' project. Class 'GDALRaster' encapsulates a
'GDALDataset' and its raster band objects. Class 'GDALVector' encapsulates
an 'OGRLayer' and the 'GDALDataset' that contains it. Class 'VSIFile'
provides bindings to the 'GDAL' 'VSIVirtualHandle' API. Additional classes
include 'CmbTable' for counting unique combinations of integers, and
'RunningStats' for computing summary statistics efficiently on large data
streams. C++ stand-alone functions provide bindings to most 'GDAL' raster
and vector utilities including 'OGR' facilities for vector geoprocessing,
several algorithms, the Geometry API ('GEOS' via 'GDAL' he [...truncated...]
Author: Chris Toney [aut, cre] ,
Michael D. Sumner [ctb],
Frank Warmerdam [ctb, cph] ,
Even Rouault [ctb, cph] ,
Marius Appel [ctb, cph] ,
Daniel James [ctb, cph] ,
Peter Dimov [ctb, cph]
Maintainer: Chris Toney <jctoney@gmail.com>
Diff between gdalraster versions 2.0.0 dated 2025-05-11 and 2.1.0 dated 2025-07-14
gdalraster-2.0.0/gdalraster/man/g_buffer.Rd |only gdalraster-2.0.0/gdalraster/man/g_make_valid.Rd |only gdalraster-2.0.0/gdalraster/man/g_simplify.Rd |only gdalraster-2.0.0/gdalraster/man/g_swap_xy.Rd |only gdalraster-2.1.0/gdalraster/DESCRIPTION | 10 gdalraster-2.1.0/gdalraster/MD5 | 173 - gdalraster-2.1.0/gdalraster/NEWS.md | 55 gdalraster-2.1.0/gdalraster/R/RcppExports.R | 151 - gdalraster-2.1.0/gdalraster/R/cmb_table.R | 4 gdalraster-2.1.0/gdalraster/R/display.R | 4 gdalraster-2.1.0/gdalraster/R/gdal_create.R | 85 gdalraster-2.1.0/gdalraster/R/gdal_helpers.R | 8 gdalraster-2.1.0/gdalraster/R/gdal_rat.R | 6 gdalraster-2.1.0/gdalraster/R/gdal_util.R | 2 gdalraster-2.1.0/gdalraster/R/gdalraster_proc.R | 262 +- gdalraster-2.1.0/gdalraster/R/gdalvector.R | 35 gdalraster-2.1.0/gdalraster/R/geom.R | 1217 ++++++--- gdalraster-2.1.0/gdalraster/R/ogr_define.R | 329 ++ gdalraster-2.1.0/gdalraster/R/ogr_manage.R | 441 ++- gdalraster-2.1.0/gdalraster/R/running_stats.R | 2 gdalraster-2.1.0/gdalraster/R/s3_methods.R | 15 gdalraster-2.1.0/gdalraster/README.md | 56 gdalraster-2.1.0/gdalraster/build/vignette.rds |binary gdalraster-2.1.0/gdalraster/configure | 36 gdalraster-2.1.0/gdalraster/configure.ac | 2 gdalraster-2.1.0/gdalraster/inst/doc/raster-api-tutorial.html | 2 gdalraster-2.1.0/gdalraster/inst/doc/raster-attribute-tables.html | 110 gdalraster-2.1.0/gdalraster/inst/doc/vector-api-overview.Rmd | 9 gdalraster-2.1.0/gdalraster/inst/doc/vector-api-overview.html | 67 gdalraster-2.1.0/gdalraster/inst/extdata/domains.gdb.zip |only gdalraster-2.1.0/gdalraster/inst/extdata/test_ogr_geojson_mixed_timezone.geojson |only gdalraster-2.1.0/gdalraster/man/CmbTable-class.Rd | 4 gdalraster-2.1.0/gdalraster/man/GDALVector-class.Rd | 37 gdalraster-2.1.0/gdalraster/man/RunningStats-class.Rd | 2 gdalraster-2.1.0/gdalraster/man/addFilesInZip.Rd | 8 gdalraster-2.1.0/gdalraster/man/bandCopyWholeRaster.Rd | 6 gdalraster-2.1.0/gdalraster/man/buildRAT.Rd | 6 gdalraster-2.1.0/gdalraster/man/buildVRT.Rd | 2 gdalraster-2.1.0/gdalraster/man/calc.Rd | 2 gdalraster-2.1.0/gdalraster/man/create.Rd | 4 gdalraster-2.1.0/gdalraster/man/createColorRamp.Rd | 8 gdalraster-2.1.0/gdalraster/man/fillNodata.Rd | 2 gdalraster-2.1.0/gdalraster/man/g_binary_op.Rd | 6 gdalraster-2.1.0/gdalraster/man/g_binary_pred.Rd | 8 gdalraster-2.1.0/gdalraster/man/g_envelope.Rd | 20 gdalraster-2.1.0/gdalraster/man/g_measures.Rd | 13 gdalraster-2.1.0/gdalraster/man/g_query.Rd | 11 gdalraster-2.1.0/gdalraster/man/g_transform.Rd | 6 gdalraster-2.1.0/gdalraster/man/g_unary_op.Rd |only gdalraster-2.1.0/gdalraster/man/g_util.Rd |only gdalraster-2.1.0/gdalraster/man/g_wk2wk.Rd | 12 gdalraster-2.1.0/gdalraster/man/gdalraster-package.Rd | 10 gdalraster-2.1.0/gdalraster/man/ogr_define.Rd | 135 - gdalraster-2.1.0/gdalraster/man/ogr_manage.Rd | 116 gdalraster-2.1.0/gdalraster/man/pixel_extract.Rd | 66 gdalraster-2.1.0/gdalraster/man/rasterFromRaster.Rd | 18 gdalraster-2.1.0/gdalraster/man/rasterToVRT.Rd | 24 gdalraster-2.1.0/gdalraster/man/rasterize.Rd | 4 gdalraster-2.1.0/gdalraster/man/read_ds.Rd | 4 gdalraster-2.1.0/gdalraster/man/srs_convert.Rd | 48 gdalraster-2.1.0/gdalraster/man/transform_bounds.Rd | 21 gdalraster-2.1.0/gdalraster/man/warp.Rd | 2 gdalraster-2.1.0/gdalraster/src/RcppExports.cpp | 343 +- gdalraster-2.1.0/gdalraster/src/gdal_exp.cpp | 48 gdalraster-2.1.0/gdalraster/src/gdal_vsi.cpp | 2 gdalraster-2.1.0/gdalraster/src/gdal_vsi.h | 2 gdalraster-2.1.0/gdalraster/src/gdalraster.cpp | 70 gdalraster-2.1.0/gdalraster/src/gdalraster.h | 16 gdalraster-2.1.0/gdalraster/src/gdalvector.cpp | 422 ++- gdalraster-2.1.0/gdalraster/src/gdalvector.h | 3 gdalraster-2.1.0/gdalraster/src/geom_api.cpp | 1309 +++++++--- gdalraster-2.1.0/gdalraster/src/geom_api.h | 109 gdalraster-2.1.0/gdalraster/src/ogr_util.cpp | 902 ++++++ gdalraster-2.1.0/gdalraster/src/ogr_util.h | 21 gdalraster-2.1.0/gdalraster/src/rcpp_util.cpp | 2 gdalraster-2.1.0/gdalraster/src/rcpp_util.h | 4 gdalraster-2.1.0/gdalraster/src/srs_api.cpp | 118 gdalraster-2.1.0/gdalraster/src/srs_api.h | 5 gdalraster-2.1.0/gdalraster/src/transform.cpp | 140 - gdalraster-2.1.0/gdalraster/src/transform.h | 13 gdalraster-2.1.0/gdalraster/src/vsifile.cpp | 4 gdalraster-2.1.0/gdalraster/src/vsifile.h | 4 gdalraster-2.1.0/gdalraster/tests/testthat/test-GDALVector-class.R | 789 +++++- gdalraster-2.1.0/gdalraster/tests/testthat/test-gdal_create.R |only gdalraster-2.1.0/gdalraster/tests/testthat/test-gdal_vsi.R | 2 gdalraster-2.1.0/gdalraster/tests/testthat/test-gdalraster_proc.R | 170 + gdalraster-2.1.0/gdalraster/tests/testthat/test-geom.R | 651 ++++ gdalraster-2.1.0/gdalraster/tests/testthat/test-ogr_manage.R | 284 ++ gdalraster-2.1.0/gdalraster/tests/testthat/test-s3_methods.R | 12 gdalraster-2.1.0/gdalraster/tests/testthat/test-srs_api.R | 6 gdalraster-2.1.0/gdalraster/tests/testthat/test-transform.R | 61 gdalraster-2.1.0/gdalraster/vignettes/vector-api-overview.Rmd | 9 92 files changed, 7272 insertions(+), 1935 deletions(-)
Title: Access Data from 'GISCO'
Description: Access data related to the European union from 'GISCO'
<https://ec.europa.eu/eurostat/web/gisco>, the Geographic Information
System of the European Commission, via its rest API at
<https://gisco-services.ec.europa.eu>.
This package tries to make it easier to get these data into R.
Author: Vilmos Prokaj [aut, cre]
Maintainer: Vilmos Prokaj <prokaj.vilmos@gmail.com>
Diff between eudata versions 0.1.2 dated 2025-07-09 and 0.1.3 dated 2025-07-14
DESCRIPTION | 8 ++-- MD5 | 8 ++-- NAMESPACE | 79 ------------------------------------------- R/eudata-package.R | 90 -------------------------------------------------- inst/doc/example.html | 30 ++++++---------- 5 files changed, 20 insertions(+), 195 deletions(-)
Title: Visualizing Classification Results
Description: Tools to visualize the results of a classification or a regression.
The graphical displays include stacked plots, silhouette plots, quasi residual plots, class maps, predictions plots, and predictions correlation plots.
Implements the techniques described and illustrated in Raymaekers J., Rousseeuw P.J., Hubert M. (2022). Class maps for visualizing classification results. \emph{Technometrics}, 64(2), 151–165. \doi{10.1080/00401706.2021.1927849}
(open access), Raymaekers J., Rousseeuw P.J.(2022). Silhouettes and quasi residual plots for neural nets and tree-based classifiers. \emph{Journal of Computational and Graphical Statistics}, 31(4), 1332–1343. \doi{10.1080/10618600.2022.2050249}, and Rousseeuw, P.J. (2025). Explainable Linear and Generalized Linear Models by the Predictions Plot. <doi:10.48550/arXiv.2412.16980> (open access).
Examples can be found in the vignettes:
"Discriminant_analysis_examples","K_nearest_neighbors_examples",
"Support_vector_machine_examples", "Rpart_exa [...truncated...]
Author: Jakob Raymaekers [aut, cre],
Peter Rousseeuw [aut]
Maintainer: Jakob Raymaekers <jakob.raymaekers@kuleuven.be>
Diff between classmap versions 1.2.5 dated 2025-06-18 and 1.2.6 dated 2025-07-14
DESCRIPTION | 23 ++++++++++---------- MD5 | 29 ++++++++++++++++---------- NAMESPACE | 12 ++++++++-- R/predsplot.R |only build/vignette.rds |binary inst/doc/Discriminant_analysis_examples.html | 6 ++--- inst/doc/K_nearest_neighbors_examples.html | 4 +-- inst/doc/Neural_net_examples.html | 4 +-- inst/doc/Random_forest_examples.html | 4 +-- inst/doc/Rpart_examples.html | 4 +-- inst/doc/Support_vector_machine_examples.Rmd | 3 -- inst/doc/Support_vector_machine_examples.html | 11 ++++----- inst/doc/predsplot_examples.R |only inst/doc/predsplot_examples.Rmd |only inst/doc/predsplot_examples.html |only man/predscor.Rd |only man/predsplot.Rd |only vignettes/Support_vector_machine_examples.Rmd | 3 -- vignettes/predsplot_examples.Rmd |only 19 files changed, 57 insertions(+), 46 deletions(-)
Title: Air Quality Evaluation
Description: Developed for use by those tasked with the routine detection, characterisation and quantification of
discrete changes in air quality time-series, such as identifying the impacts of air quality policy
interventions. The main functions use signal isolation then break-point/segment (BP/S) methods based
on 'strucchange' and 'segmented' methods to detect and quantify change events (Ropkins & Tate, 2021,
<doi:10.1016/j.scitotenv.2020.142374>).
Author: Karl Ropkins [aut, cre] ,
Anthony Walker [aut] ,
James Tate [aut]
Maintainer: Karl Ropkins <k.ropkins@its.leeds.ac.uk>
Diff between AQEval versions 0.6.0 dated 2025-01-09 and 0.6.2 dated 2025-07-14
DESCRIPTION | 35 +++++++++++++++++------------------ MD5 | 20 ++++++++++++++------ NEWS.md | 3 +++ R/calculate.stats.R | 6 +++++- R/isolate.signal.R | 34 ++++++++++++++++++++++++++++++++-- build/partial.rdb |binary inst/tinytest |only man/isolate.signal.Rd | 4 ++++ tests |only 9 files changed, 75 insertions(+), 27 deletions(-)
Title: Annotate Package Load Calls
Description: Provides non-invasive annotation of package load calls
such as \code{library()}, \code{p_load()}, and \code{require()} so that we can have an idea of what
the packages we are loading are meant for.
Author: Luis D. Verde Arregoitia [aut, cre] ,
Juan Cruz Rodriguez [ctb],
Hadley Wickham [ctb]
Maintainer: Luis D. Verde Arregoitia <luis@liomys.mx>
Diff between annotater versions 0.2.3 dated 2024-01-26 and 0.2.4 dated 2025-07-14
annotater-0.2.3/annotater/inst/media |only annotater-0.2.4/annotater/DESCRIPTION | 18 annotater-0.2.4/annotater/MD5 | 51 +- annotater-0.2.4/annotater/NAMESPACE | 7 annotater-0.2.4/annotater/NEWS.md | 5 annotater-0.2.4/annotater/R/annotate_active_file.R | 5 annotater-0.2.4/annotater/R/annotate_fun_calls.R | 38 + annotater-0.2.4/annotater/R/annotate_fun_calls_active_file.R | 7 annotater-0.2.4/annotater/R/annotate_pkg_datasets_active.R | 5 annotater-0.2.4/annotater/R/annotate_r_version.R |only annotater-0.2.4/annotater/R/annotate_repo_source.R | 16 annotater-0.2.4/annotater/R/annotate_repos_active_file.R | 5 annotater-0.2.4/annotater/R/annotate_repostitle.R | 44 +- annotater-0.2.4/annotater/R/annotate_repostitle_active.R | 5 annotater-0.2.4/annotater/R/expand_metapackages_active.R | 5 annotater-0.2.4/annotater/R/globals.R |only annotater-0.2.4/annotater/README.md | 221 ++++++++--- annotater-0.2.4/annotater/build/vignette.rds |binary annotater-0.2.4/annotater/inst/doc/annotater_intro.R | 4 annotater-0.2.4/annotater/inst/doc/annotater_intro.Rmd | 4 annotater-0.2.4/annotater/inst/doc/annotater_intro.html | 12 annotater-0.2.4/annotater/inst/rstudio/addins.dcf | 5 annotater-0.2.4/annotater/man/annotate_r_version.Rd |only annotater-0.2.4/annotater/man/annotate_repo_source.Rd | 2 annotater-0.2.4/annotater/man/annotate_repostitle.Rd | 2 annotater-0.2.4/annotater/vignettes/annotater_intro.Rmd | 4 26 files changed, 301 insertions(+), 164 deletions(-)
Title: Truncated Harmonic Mean Estimator of the Marginal Likelihood for
Mixtures
Description: Implements the truncated harmonic mean estimator (THAMES)
of the reciprocal marginal likelihood for uni- and multivariate mixture
models using posterior samples and unnormalized log posterior values via
reciprocal importance sampling.
Metodiev, Irons, Perrot-Dockès, Latouche & Raftery (2025)
<doi:10.48550/arXiv.2504.21812>.
Author: Martin Metodiev [aut, cre, cph] ,
Nicholas J. Irons [aut] ,
Marie Perrot-Dockes [aut]
Maintainer: Martin Metodiev <m.metodiev@tutanota.com>
Diff between thamesmix versions 0.1.2 dated 2025-06-26 and 0.1.3 dated 2025-07-14
DESCRIPTION | 10 +++++----- MD5 | 19 +++++++++++-------- NAMESPACE | 4 +++- NEWS.md | 9 ++------- R/compute_W_c_volB.R | 3 +-- R/unformly_functions.R |only inst/doc/thames_mixtures_vignette.R | 1 - inst/doc/thames_mixtures_vignette.Rmd | 1 - inst/doc/thames_mixtures_vignette.html | 2 +- man/runif_ellipsoid.Rd |only man/runif_sphere.Rd |only vignettes/thames_mixtures_vignette.Rmd | 1 - 12 files changed, 23 insertions(+), 27 deletions(-)
Title: Bayesian Estimation of Multivariate Threshold Autoregressive
Models
Description: Estimation, inference and forecasting using the Bayesian approach for multivariate threshold autoregressive (TAR) models in which the distribution used to describe the noise process belongs to the class of Gaussian variance mixtures.
Author: Luis Hernando Vanegas [aut, cre],
Sergio Alejandro Calderon [aut],
Luz Marina Rondon [aut]
Maintainer: Luis Hernando Vanegas <lhvanegasp@unal.edu.co>
Diff between mtarm versions 0.1.5 dated 2025-05-07 and 0.1.6 dated 2025-07-14
DESCRIPTION | 6 +-- MD5 | 6 +-- R/mtar.R | 102 ++++++++++++++++++++++++++++++++++++++-------------------- man/simtar.Rd | 9 ++--- 4 files changed, 78 insertions(+), 45 deletions(-)
Title: Logic Forest
Description: Logic Forest is an ensemble machine learning method that identifies important and interpretable combinations of binary predictors using logic regression trees to model complex relationships with an outcome. Wolf, B.J., Slate, E.H., Hill, E.G. (2010) <doi:10.1093/bioinformatics/btq354>.
Author: Bethany Wolf [aut],
Melica Nikahd [ctb, cre],
Andrew Gothard [ctb],
Madison Hyer [ctb]
Maintainer: Melica Nikahd <melica.nikahd@osumc.edu>
Diff between LogicForest versions 2.1.1 dated 2024-03-13 and 2.1.2 dated 2025-07-14
LogicForest-2.1.1/LogicForest/R/LF.data.R |only LogicForest-2.1.1/LogicForest/R/LogicForest-package.R |only LogicForest-2.1.1/LogicForest/R/Perms.R |only LogicForest-2.1.1/LogicForest/R/pimp.mat_.R |only LogicForest-2.1.1/LogicForest/build/vignette.rds |only LogicForest-2.1.1/LogicForest/data |only LogicForest-2.1.1/LogicForest/inst |only LogicForest-2.1.1/LogicForest/man/LF.data.Rd |only LogicForest-2.1.1/LogicForest/man/pimp.mat.Rd |only LogicForest-2.1.1/LogicForest/vignettes |only LogicForest-2.1.2/LogicForest/DESCRIPTION | 16 - LogicForest-2.1.2/LogicForest/MD5 | 64 ++-- LogicForest-2.1.2/LogicForest/NAMESPACE | 9 LogicForest-2.1.2/LogicForest/R/TTab.R | 28 + LogicForest-2.1.2/LogicForest/R/a.frame.logreg2.R |only LogicForest-2.1.2/LogicForest/R/find.ctree.R |only LogicForest-2.1.2/LogicForest/R/logforest.R | 226 +++++++++++---- LogicForest-2.1.2/LogicForest/R/p.combos.R | 37 +- LogicForest-2.1.2/LogicForest/R/perms.R |only LogicForest-2.1.2/LogicForest/R/pimp.import.R | 216 +++++++++++--- LogicForest-2.1.2/LogicForest/R/pimp.mat.bin.R |only LogicForest-2.1.2/LogicForest/R/pimp.mat.nonbin.R |only LogicForest-2.1.2/LogicForest/R/predict.logforest.R | 76 ++++- LogicForest-2.1.2/LogicForest/R/predict.logreg2.R |only LogicForest-2.1.2/LogicForest/R/prime.imp.R | 29 - LogicForest-2.1.2/LogicForest/R/print.LFprediction.R | 16 - LogicForest-2.1.2/LogicForest/R/print.logforest.R | 35 +- LogicForest-2.1.2/LogicForest/R/proportion.positive.R | 59 ++- LogicForest-2.1.2/LogicForest/R/zzz_globals.R |only LogicForest-2.1.2/LogicForest/build/partial.rdb |only LogicForest-2.1.2/LogicForest/man/Perms.Rd | 8 LogicForest-2.1.2/LogicForest/man/TTab.Rd | 26 + LogicForest-2.1.2/LogicForest/man/find.ctree.Rd |only LogicForest-2.1.2/LogicForest/man/frame.logreg2.Rd |only LogicForest-2.1.2/LogicForest/man/logforest.Rd | 103 +++++- LogicForest-2.1.2/LogicForest/man/p.combos.Rd | 8 LogicForest-2.1.2/LogicForest/man/pimp.import.Rd | 48 ++- LogicForest-2.1.2/LogicForest/man/pimp.mat.bin.Rd |only LogicForest-2.1.2/LogicForest/man/pimp.mat.nonbin.Rd |only LogicForest-2.1.2/LogicForest/man/predict.logforest.Rd |only LogicForest-2.1.2/LogicForest/man/predict.logreg2.Rd |only LogicForest-2.1.2/LogicForest/man/prime.imp.Rd | 16 - LogicForest-2.1.2/LogicForest/man/print.LFprediction.Rd |only LogicForest-2.1.2/LogicForest/man/print.logforest.Rd |only LogicForest-2.1.2/LogicForest/man/proportion.positive.Rd | 10 45 files changed, 784 insertions(+), 246 deletions(-)
Title: A System of Plotting Optimized for Speed and Modularity
Description: A high-level plotting system, compatible with `ggplot2` objects,
maps from `sf`, `terra`, `raster`, `sp`. It is built primarily on the
'grid' package. The objective of the package is to provide a plotting system
that is built for speed and modularity. This is useful for quick visualizations
when testing code and for plotting multiple figures to the same device from
independent sources that may be independent of one another (i.e., different
function or modules the create the visualizations).
Author: Eliot J B McIntire [aut, cre] ,
Alex M Chubaty [aut] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources Canada [cph]
Maintainer: Eliot J B McIntire <eliot.mcintire@canada.ca>
Diff between quickPlot versions 1.0.2 dated 2023-07-02 and 1.0.4 dated 2025-07-14
quickPlot-1.0.2/quickPlot/tests/testthat/_snaps/Plot |only quickPlot-1.0.4/quickPlot/DESCRIPTION | 32 quickPlot-1.0.4/quickPlot/MD5 | 253 +- quickPlot-1.0.4/quickPlot/NAMESPACE | 12 quickPlot-1.0.4/quickPlot/NEWS.md | 60 quickPlot-1.0.4/quickPlot/R/plotting-colours.R | 21 quickPlot-1.0.4/quickPlot/R/plotting-helpers.R | 1000 +++++----- quickPlot-1.0.4/quickPlot/R/plotting-other.R | 135 - quickPlot-1.0.4/quickPlot/R/plotting.R | 129 - quickPlot-1.0.4/quickPlot/R/quickPlot-package.R | 26 quickPlot-1.0.4/quickPlot/R/testing-helpers.R | 46 quickPlot-1.0.4/quickPlot/README.md | 10 quickPlot-1.0.4/quickPlot/build/vignette.rds |binary quickPlot-1.0.4/quickPlot/inst/WORDLIST | 3 quickPlot-1.0.4/quickPlot/inst/doc/iii-plotting.R | 150 - quickPlot-1.0.4/quickPlot/inst/doc/iii-plotting.Rmd | 92 quickPlot-1.0.4/quickPlot/inst/doc/iii-plotting.html | 366 +-- quickPlot-1.0.4/quickPlot/man/Plot-internal.Rd | 6 quickPlot-1.0.4/quickPlot/man/Plot.Rd | 14 quickPlot-1.0.4/quickPlot/man/coordinates.Rd | 8 quickPlot-1.0.4/quickPlot/man/dev.Rd | 2 quickPlot-1.0.4/quickPlot/man/extent.Rd | 25 quickPlot-1.0.4/quickPlot/man/layerNames.Rd | 8 quickPlot-1.0.4/quickPlot/man/newPlot.Rd | 8 quickPlot-1.0.4/quickPlot/man/parseArgs.Rd | 2 quickPlot-1.0.4/quickPlot/man/plotGrob.Rd | 11 quickPlot-1.0.4/quickPlot/man/quickPlot-package.Rd | 4 quickPlot-1.0.4/quickPlot/man/quickPlotMouseClicks.Rd | 4 quickPlot-1.0.4/quickPlot/man/sp2sl.Rd | 16 quickPlot-1.0.4/quickPlot/man/thin.Rd | 8 quickPlot-1.0.4/quickPlot/man/whereInStack.Rd | 6 quickPlot-1.0.4/quickPlot/tests/testthat/_snaps/Plot-snapshots |only quickPlot-1.0.4/quickPlot/tests/testthat/helper-testInit.R | 50 quickPlot-1.0.4/quickPlot/tests/testthat/setup.R | 1 quickPlot-1.0.4/quickPlot/tests/testthat/test-Plot-do-call.R | 4 quickPlot-1.0.4/quickPlot/tests/testthat/test-Plot-nonVisual.R | 10 quickPlot-1.0.4/quickPlot/tests/testthat/test-Plot-snapshots.R |only quickPlot-1.0.4/quickPlot/tests/testthat/test-Plot.R | 838 -------- quickPlot-1.0.4/quickPlot/tests/testthat/test-examples.R | 1 quickPlot-1.0.4/quickPlot/vignettes/iii-plotting.Rmd | 92 40 files changed, 1449 insertions(+), 2004 deletions(-)
Title: Use Foreach to Parallelize via the Future Framework
Description: The 'future' package provides a unifying parallelization framework for R that supports many parallel and distributed backends <doi:10.32614/RJ-2021-048>. The 'foreach' package provides a powerful API for iterating over an R expression in parallel. The 'doFuture' package brings the best of the two together. There are two alternative ways to use this package. The recommended approach is to use 'y <- foreach(...) %dofuture% { ... }', which does not require using 'registerDoFuture()' and has many advantages over '%dopar%'. The alternative is the traditional 'foreach' approach by registering the 'foreach' adapter 'registerDoFuture()' and so that 'y <- foreach(...) %dopar% { ... }' runs in parallelizes with the 'future' framework.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between doFuture versions 1.1.1 dated 2025-06-06 and 1.1.2 dated 2025-07-14
DESCRIPTION | 6 +++--- MD5 | 18 ++++++++++-------- NEWS.md | 11 +++++++++++ R/globals.R | 4 ++-- R/utils-debug.R | 33 ++++++++++++--------------------- R/with.DoPar.R | 6 +++--- R/zzz.R | 7 +++++++ build/vignette.rds |binary inst/testme/test-with.DoPar.R |only man/with.DoPar.Rd | 2 +- tests/test-with.DoPar.R |only 11 files changed, 49 insertions(+), 38 deletions(-)
Title: Bayesian Cost Effectiveness Analysis
Description: Produces an economic evaluation of a sample of suitable variables of
cost and effectiveness / utility for two or more interventions,
e.g. from a Bayesian model in the form of MCMC simulations.
This package computes the most cost-effective alternative and
produces graphical summaries and probabilistic sensitivity analysis,
see Baio et al (2017) <doi:10.1007/978-3-319-55718-2>.
Author: Gianluca Baio [aut, cre, cph] ,
Andrea Berardi [aut] ,
Anna Heath [aut] ,
Nathan Green [aut]
Maintainer: Gianluca Baio <g.baio@ucl.ac.uk>
Diff between BCEA versions 2.4.8 dated 2025-07-04 and 2.4.81 dated 2025-07-14
DESCRIPTION | 12 ++++++------ MD5 | 18 +++++++++--------- NEWS.md | 11 ++++++++++- R/ceac_plot_graph.R | 4 ++-- R/compute_xxx.R | 43 ++++++++++++++++++++++++++++++------------- R/multi.ce.R | 1 + R/summary.pairwise.R | 6 +++--- R/zzz.R | 2 +- build/partial.rdb |binary man/BCEA-package.Rd | 4 ++-- 10 files changed, 64 insertions(+), 37 deletions(-)
Title: Fast and Vectorized Base 64 Engine
Description: Provides a fast, lightweight, and vectorized base 64 engine
to encode and decode character and raw vectors as well as files stored
on disk. Common base 64 alphabets are supported out of the box
including the standard, URL-safe, bcrypt, crypt, 'BinHex', and
IMAP-modified UTF-7 alphabets. Custom engines can be created to
support unique base 64 encoding and decoding needs.
Author: Josiah Parry [aut, cre] ,
Etienne Bacher [ctb]
Maintainer: Josiah Parry <josiah.parry@gmail.com>
Diff between b64 versions 0.1.6 dated 2025-05-19 and 0.1.7 dated 2025-07-14
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 5 +++++ src/rust/Cargo.lock | 19 +++++++++++-------- src/rust/Cargo.toml | 15 ++++++--------- src/rust/src/lib.rs | 8 ++++---- src/rust/vendor-config.toml | 4 ---- src/rust/vendor.tar.xz |binary 8 files changed, 37 insertions(+), 36 deletions(-)
Title: Multivariate Normal Probabilities using Vecchia Approximation
Description: Under a different representation of the multivariate normal (MVN) probability, we can use the Vecchia approximation to sample the integrand at a linear complexity with respect to n. Additionally, both the SOV algorithm from Genz (92) and the exponential-tilting method from Botev (2017) can be adapted to linear complexity. The reference for the method implemented in this package is Jian Cao and Matthias Katzfuss (2024) "Linear-Cost Vecchia Approximation of Multivariate Normal Probabilities" <doi:10.48550/arXiv.2311.09426>. Two major references for the development of our method are Alan Genz (1992) "Numerical Computation of Multivariate Normal Probabilities" <doi:10.1080/10618600.1992.10477010> and Z. I. Botev (2017) "The Normal Law Under Linear Restrictions: Simulation and Estimation via Minimax Tilting" <doi:10.48550/arXiv.1603.04166>.
Author: Jian Cao [aut, cre],
Matthias Katzfuss [aut]
Maintainer: Jian Cao <jcao2416@gmail.com>
Diff between VeccTMVN versions 1.2.1 dated 2024-11-26 and 1.3.0 dated 2025-07-14
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 5 +++-- R/mvnrnd_cwrap.R | 7 ++++++- R/rnd_TMVN.R | 4 ++++ R/rnd_TMVT.R | 4 ++++ 6 files changed, 26 insertions(+), 12 deletions(-)
Title: Parsing, Anonymizing and Visualizing Exported 'WhatsApp' Chat
Logs
Description: Imports 'WhatsApp' chat logs and parses them into
a usable dataframe object. The parser works on chats exported
from Android or iOS phones and on Linux, macOS and Windows. The parser has multiple options for extracting smileys and emojis
from the messages, extracting URLs and domains from the messages, extracting names and types of sent
media files from the messages, extracting timestamps from messages, extracting and anonymizing author
names from messages. Can be used to create anonymized versions of data.
Author: Julian Kohne [aut, cre]
Maintainer: Julian Kohne <julian.kohne@gesis.org>
Diff between WhatsR versions 1.0.4 dated 2024-01-29 and 1.0.6 dated 2025-07-14
WhatsR-1.0.4/WhatsR/README.md |only WhatsR-1.0.4/WhatsR/man/figures/plot_location().png |only WhatsR-1.0.6/WhatsR/DESCRIPTION | 22 +- WhatsR-1.0.6/WhatsR/MD5 | 170 ++++++++-------- WhatsR-1.0.6/WhatsR/NAMESPACE | 9 WhatsR-1.0.6/WhatsR/R/download_emoji.R | 1 WhatsR-1.0.6/WhatsR/R/parse_android.R | 9 WhatsR-1.0.6/WhatsR/R/parse_chat.R | 79 ++++++- WhatsR-1.0.6/WhatsR/R/parse_ios.R | 9 WhatsR-1.0.6/WhatsR/R/plot_locations.R | 111 +++------- WhatsR-1.0.6/WhatsR/R/plot_network.R | 5 WhatsR-1.0.6/WhatsR/inst/CITATION | 20 + WhatsR-1.0.6/WhatsR/inst/EnglishAndroid24H_default.rds |binary WhatsR-1.0.6/WhatsR/inst/EnglishAndroidAMPM_default.rds |binary WhatsR-1.0.6/WhatsR/inst/EnglishIos24H_default.rds |binary WhatsR-1.0.6/WhatsR/inst/EnglishIosAMPM_default.rds |binary WhatsR-1.0.6/WhatsR/inst/GermanAndroid24H_default.rds |binary WhatsR-1.0.6/WhatsR/inst/GermanAndroidAMPM_default.rds |binary WhatsR-1.0.6/WhatsR/inst/GermanIos24H_default.rds |binary WhatsR-1.0.6/WhatsR/inst/GermanIosAMPM_default.rds |binary WhatsR-1.0.6/WhatsR/inst/Languages.csv | 10 WhatsR-1.0.6/WhatsR/inst/TailoredData1.rds |binary WhatsR-1.0.6/WhatsR/inst/TailoredData2.rds |binary WhatsR-1.0.6/WhatsR/inst/TailoredData3.rds |binary WhatsR-1.0.6/WhatsR/inst/TailoredData4.rds |binary WhatsR-1.0.6/WhatsR/inst/englishandroid24h.txt | 2 WhatsR-1.0.6/WhatsR/inst/englishandroidampm.txt | 2 WhatsR-1.0.6/WhatsR/inst/englishios24h.txt | 2 WhatsR-1.0.6/WhatsR/inst/englishiosampm.txt | 2 WhatsR-1.0.6/WhatsR/inst/germanandroid24h.txt | 2 WhatsR-1.0.6/WhatsR/inst/germanandroidampm.txt | 2 WhatsR-1.0.6/WhatsR/inst/germanios24h.txt | 2 WhatsR-1.0.6/WhatsR/inst/germaniosampm.txt | 2 WhatsR-1.0.6/WhatsR/inst/summarize_chat1.rds |binary WhatsR-1.0.6/WhatsR/inst/summarize_chat2.rds |binary WhatsR-1.0.6/WhatsR/inst/test_emoji1.rds |binary WhatsR-1.0.6/WhatsR/inst/test_emoji2.rds |binary WhatsR-1.0.6/WhatsR/inst/test_emoji3.rds |binary WhatsR-1.0.6/WhatsR/inst/test_emoji4.rds |binary WhatsR-1.0.6/WhatsR/inst/test_lediplo1.rds |binary WhatsR-1.0.6/WhatsR/inst/test_lediplo2.rds |binary WhatsR-1.0.6/WhatsR/inst/test_lediplo3.rds |binary WhatsR-1.0.6/WhatsR/inst/test_lediplo4.rds |binary WhatsR-1.0.6/WhatsR/inst/test_links1.rds |binary WhatsR-1.0.6/WhatsR/inst/test_links2.rds |binary WhatsR-1.0.6/WhatsR/inst/test_links3.rds |binary WhatsR-1.0.6/WhatsR/inst/test_links4.rds |binary WhatsR-1.0.6/WhatsR/inst/test_location1.rds |binary WhatsR-1.0.6/WhatsR/inst/test_location2.rds |binary WhatsR-1.0.6/WhatsR/inst/test_location3.rds |binary WhatsR-1.0.6/WhatsR/inst/test_location4.rds |binary WhatsR-1.0.6/WhatsR/inst/test_media1.rds |binary WhatsR-1.0.6/WhatsR/inst/test_media2.rds |binary WhatsR-1.0.6/WhatsR/inst/test_media3.rds |binary WhatsR-1.0.6/WhatsR/inst/test_media4.rds |binary WhatsR-1.0.6/WhatsR/inst/test_messages1.rds |binary WhatsR-1.0.6/WhatsR/inst/test_messages2.rds |binary WhatsR-1.0.6/WhatsR/inst/test_messages3.rds |binary WhatsR-1.0.6/WhatsR/inst/test_messages4.rds |binary WhatsR-1.0.6/WhatsR/inst/test_network1.rds |binary WhatsR-1.0.6/WhatsR/inst/test_network2.rds |binary WhatsR-1.0.6/WhatsR/inst/test_network3.rds |binary WhatsR-1.0.6/WhatsR/inst/test_network4.rds |binary WhatsR-1.0.6/WhatsR/inst/test_replytimes1.rds |binary WhatsR-1.0.6/WhatsR/inst/test_replytimes2.rds |binary WhatsR-1.0.6/WhatsR/inst/test_replytimes3.rds |binary WhatsR-1.0.6/WhatsR/inst/test_replytimes4.rds |binary WhatsR-1.0.6/WhatsR/inst/test_smilies1.rds |binary WhatsR-1.0.6/WhatsR/inst/test_smilies2.rds |binary WhatsR-1.0.6/WhatsR/inst/test_smilies3.rds |binary WhatsR-1.0.6/WhatsR/inst/test_smilies4.rds |binary WhatsR-1.0.6/WhatsR/inst/test_tokens1.rds |binary WhatsR-1.0.6/WhatsR/inst/test_tokens2.rds |binary WhatsR-1.0.6/WhatsR/inst/test_tokens3.rds |binary WhatsR-1.0.6/WhatsR/inst/test_tokens4.rds |binary WhatsR-1.0.6/WhatsR/inst/test_tot1.rds |binary WhatsR-1.0.6/WhatsR/inst/test_tot2.rds |binary WhatsR-1.0.6/WhatsR/inst/test_tot3.rds |binary WhatsR-1.0.6/WhatsR/inst/test_tot4.rds |binary WhatsR-1.0.6/WhatsR/inst/test_wc1.rds |binary WhatsR-1.0.6/WhatsR/inst/test_wc2.rds |binary WhatsR-1.0.6/WhatsR/inst/test_wc3.rds |binary WhatsR-1.0.6/WhatsR/inst/test_wc4.rds |binary WhatsR-1.0.6/WhatsR/man/figures/plot_locations().png |only WhatsR-1.0.6/WhatsR/man/plot_locations.Rd | 17 - WhatsR-1.0.6/WhatsR/man/plot_network.Rd | 2 WhatsR-1.0.6/WhatsR/tests/testthat/Rplots.pdf |only WhatsR-1.0.6/WhatsR/tests/testthat/test-WhatsR-tests.R | 110 +++++++--- 88 files changed, 351 insertions(+), 239 deletions(-)
Title: USGS ScienceBase Tools
Description: Tools for interacting with U.S. Geological Survey ScienceBase
<https://www.sciencebase.gov> interfaces. ScienceBase is a data cataloging and
collaborative data management platform. Functions included for querying
ScienceBase, and creating and fetching datasets.
Author: David Blodgett [cre],
Luke Winslow [aut],
Scott Chamberlain [ctb],
Alison Appling [ctb],
Jordan Read [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between sbtools versions 1.4.0 dated 2025-07-07 and 1.4.1 dated 2025-07-14
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ R/gql_helpers.R | 13 +++++++++++++ R/item_replace_files.R | 2 +- R/item_rm.R | 2 +- R/item_rm_files.R | 20 +++++++++++++------- inst/doc/sbtools.html | 20 ++++++++++---------- man/item_rm_recursive.Rd | 2 +- 9 files changed, 54 insertions(+), 31 deletions(-)
Title: Anything to 'POSIXct' or 'Date' Converter
Description: Convert input in any one of character, integer, numeric, factor,
or ordered type into 'POSIXct' (or 'Date') objects, using one of a number of
predefined formats, and relying on Boost facilities for date and time parsing.
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between anytime versions 0.3.11 dated 2024-12-19 and 0.3.12 dated 2025-07-14
ChangeLog | 30 ++++++++++++++++++++++++++++++ DESCRIPTION | 15 ++++++++------- MD5 | 18 ++++++++++-------- R/anytime.R | 7 ++++++- README.md | 15 ++++++++++++--- build/partial.rdb |binary build/vignette.rds |binary configure |only inst/NEWS.Rd | 12 +++++++++++- inst/doc/anytime-introduction.pdf |binary inst/tinytest/test_gh_issue_135.R |only 11 files changed, 77 insertions(+), 20 deletions(-)
Title: Interfacing 'NaileR' with 'Shiny'
Description: A very small package for more convenient use of 'NaileR'. You provide a data set containing a latent variable you want to understand. It generates a description and an interpretation of this latent variable using a Large Language Model. For perceptual data, it describes the stimuli used in the experiment.
Author: Sebastien Le [aut, cre]
Maintainer: Sebastien Le <sebastien.le@institut-agro.fr>
Diff between PolisheR versions 1.1.0 dated 2025-07-13 and 1.1.1 dated 2025-07-14
DESCRIPTION | 6 +-- MD5 | 10 ++--- NEWS.md | 11 ++++++ R/shiny_nail_catdes.R | 81 ++++++++++++++++++++++++++++++++--------------- R/shiny_nail_condes.R | 24 ++++++++----- man/shiny_nail_catdes.Rd | 9 +++-- 6 files changed, 95 insertions(+), 46 deletions(-)
Title: Search and Get Data from the I14Y Interoperability Platform of
Switzerland
Description: Search and download Swiss data and metadata from the I14Y
interoperability platform of Switzerland using its public APIs
<https://www.i14y.admin.ch/api/index.html>.
Author: Felix Luginbuhl [aut, cre, cph] ,
Felix Lorenz [ctr]
Maintainer: Felix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between I14Y versions 0.1.4 dated 2025-06-09 and 0.1.5 dated 2025-07-14
I14Y-0.1.4/I14Y/R/i14y_get_data_element.R |only I14Y-0.1.4/I14Y/R/i14y_get_dataset_description.R |only I14Y-0.1.4/I14Y/R/i14y_get_dataset_distributions.R |only I14Y-0.1.4/I14Y/man/i14y_get_data_element.Rd |only I14Y-0.1.4/I14Y/man/i14y_get_dataset_description.Rd |only I14Y-0.1.4/I14Y/man/i14y_get_dataset_distributions.Rd |only I14Y-0.1.4/I14Y/tests/testthat/test-i14y_get_data_element.R |only I14Y-0.1.4/I14Y/tests/testthat/test-i14y_get_dataset_description.R |only I14Y-0.1.4/I14Y/tests/testthat/test-i14y_get_dataset_distributions.R |only I14Y-0.1.4/I14Y/tests/testthat/testthat-problems.rds |only I14Y-0.1.5/I14Y/DESCRIPTION | 17 I14Y-0.1.5/I14Y/MD5 | 51 - I14Y-0.1.5/I14Y/NAMESPACE | 4 I14Y-0.1.5/I14Y/NEWS.md | 12 I14Y-0.1.5/I14Y/R/i14y_get_dataset_metadata.R |only I14Y-0.1.5/I14Y/R/i14y_search_catalog.R | 4 I14Y-0.1.5/I14Y/R/i14y_search_concept.R | 50 + I14Y-0.1.5/I14Y/README.md | 271 +++++----- I14Y-0.1.5/I14Y/man/i14y_get_codelist.Rd | 50 - I14Y-0.1.5/I14Y/man/i14y_get_concept.Rd | 50 - I14Y-0.1.5/I14Y/man/i14y_get_concept_all_versions.Rd | 50 - I14Y-0.1.5/I14Y/man/i14y_get_content_information.Rd | 44 - I14Y-0.1.5/I14Y/man/i14y_get_data_service.Rd | 50 - I14Y-0.1.5/I14Y/man/i14y_get_data_structure.Rd | 48 - I14Y-0.1.5/I14Y/man/i14y_get_dataset_metadata.Rd |only I14Y-0.1.5/I14Y/man/i14y_get_nomenclature_level.Rd | 68 +- I14Y-0.1.5/I14Y/man/i14y_get_nomenclature_level_multiple.Rd | 92 +-- I14Y-0.1.5/I14Y/man/i14y_search_catalog.Rd | 110 ++-- I14Y-0.1.5/I14Y/man/i14y_search_concept.Rd | 80 +- I14Y-0.1.5/I14Y/man/i14y_search_nomenclature.Rd | 68 +- I14Y-0.1.5/I14Y/tests/testthat.R | 24 I14Y-0.1.5/I14Y/tests/testthat/test-i14y_get_dataset_metadata.R |only I14Y-0.1.5/I14Y/tests/testthat/test-i14y_search_concept.R | 10 33 files changed, 590 insertions(+), 563 deletions(-)
Title: Comprehensive Analysis of 'GENCODE' Annotations and Splice Site
Motifs
Description: A comprehensive suite of helper functions designed to facilitate the analysis of genomic annotations from the 'GENCODE' database <https://www.gencodegenes.org/>, supporting both human and mouse genomes. This toolkit enables users to extract, filter, and analyze a wide range of annotation features including genes, transcripts, exons, and introns across different 'GENCODE' releases. It provides functionality for cross-version comparisons, allowing researchers to systematically track annotation updates, structural changes, and feature-level differences between releases. In addition, the package can generate high-quality FASTA files containing donor and acceptor splice site motifs, which are formatted for direct input into the 'MaxEntScan' tool (Yeo and Burge, 2004 <doi:10.1089/1066527041410418>), enabling accurate calculation of splice site strength scores.
Author: Monah Abou Alezz [aut, cre, cph] ,
Lorenzo Salviati [ctb],
Roberta Alfieri [ctb],
Silvia Bione [ctb]
Maintainer: Monah Abou Alezz <aboualezz.monah@hsr.it>
Diff between GencoDymo2 versions 1.0.1 dated 2025-05-15 and 1.0.2 dated 2025-07-14
GencoDymo2-1.0.1/GencoDymo2/tests |only GencoDymo2-1.0.2/GencoDymo2/DESCRIPTION | 21 GencoDymo2-1.0.2/GencoDymo2/MD5 | 38 GencoDymo2-1.0.2/GencoDymo2/NAMESPACE | 2 GencoDymo2-1.0.2/GencoDymo2/NEWS.md | 10 GencoDymo2-1.0.2/GencoDymo2/R/files.R | 6 GencoDymo2-1.0.2/GencoDymo2/R/introns.R | 199 GencoDymo2-1.0.2/GencoDymo2/R/utils.R | 96 GencoDymo2-1.0.2/GencoDymo2/README.md | 258 GencoDymo2-1.0.2/GencoDymo2/build/vignette.rds |binary GencoDymo2-1.0.2/GencoDymo2/inst/doc/GencoDymo2_vignette.R | 410 GencoDymo2-1.0.2/GencoDymo2/inst/doc/GencoDymo2_vignette.html | 4223 +++++----- GencoDymo2-1.0.2/GencoDymo2/man/assign_splice_sites.Rd | 40 GencoDymo2-1.0.2/GencoDymo2/man/calculate_gc_content.Rd | 17 GencoDymo2-1.0.2/GencoDymo2/man/extract_cds_sequences.Rd | 29 GencoDymo2-1.0.2/GencoDymo2/man/extract_ss_motif.Rd | 55 GencoDymo2-1.0.2/GencoDymo2/man/find_cryptic_splice_sites.Rd | 18 GencoDymo2-1.0.2/GencoDymo2/man/get_gff3.Rd | 2 GencoDymo2-1.0.2/GencoDymo2/man/get_gtf.Rd | 2 GencoDymo2-1.0.2/GencoDymo2/man/get_latest_release.Rd | 2 20 files changed, 2706 insertions(+), 2722 deletions(-)
Title: Search Download and Handle Data from Copernicus Marine Service
Information
Description: Subset and download data from EU Copernicus Marine
Service Information: <https://data.marine.copernicus.eu>.
Import data on the oceans physical and biogeochemical state
from Copernicus into R without the need of external software.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between CopernicusMarine versions 0.2.5 dated 2025-04-05 and 0.2.6 dated 2025-07-14
CopernicusMarine-0.2.5/CopernicusMarine/tests/testthat/test_stac.r |only CopernicusMarine-0.2.6/CopernicusMarine/DESCRIPTION | 23 - CopernicusMarine-0.2.6/CopernicusMarine/MD5 | 67 ++-- CopernicusMarine-0.2.6/CopernicusMarine/NAMESPACE | 8 CopernicusMarine-0.2.6/CopernicusMarine/NEWS.md | 11 CopernicusMarine-0.2.6/CopernicusMarine/R/cms_catalogue_entry.R |only CopernicusMarine-0.2.6/CopernicusMarine/R/cms_cite_product.r | 3 CopernicusMarine-0.2.6/CopernicusMarine/R/cms_download_native.R |only CopernicusMarine-0.2.6/CopernicusMarine/R/cms_download_stac.r | 88 +----- CopernicusMarine-0.2.6/CopernicusMarine/R/cms_download_subset.r | 94 ------ CopernicusMarine-0.2.6/CopernicusMarine/R/cms_list_stac_files.r | 80 ----- CopernicusMarine-0.2.6/CopernicusMarine/R/cms_login.r | 136 +++++++--- CopernicusMarine-0.2.6/CopernicusMarine/R/cms_product_details.r | 64 ++-- CopernicusMarine-0.2.6/CopernicusMarine/R/cms_product_metadata.r | 62 ++-- CopernicusMarine-0.2.6/CopernicusMarine/R/cms_product_services.r | 40 +- CopernicusMarine-0.2.6/CopernicusMarine/R/cms_products_list.r | 20 + CopernicusMarine-0.2.6/CopernicusMarine/R/cms_stac_properties.r | 25 - CopernicusMarine-0.2.6/CopernicusMarine/R/cms_wmts.r | 11 CopernicusMarine-0.2.6/CopernicusMarine/R/generics.r | 99 ++++--- CopernicusMarine-0.2.6/CopernicusMarine/README.md | 117 +++++--- CopernicusMarine-0.2.6/CopernicusMarine/man/account.Rd |only CopernicusMarine-0.2.6/CopernicusMarine/man/cms_cite_product.Rd | 1 CopernicusMarine-0.2.6/CopernicusMarine/man/cms_download_native.Rd |only CopernicusMarine-0.2.6/CopernicusMarine/man/cms_download_subset.Rd | 12 CopernicusMarine-0.2.6/CopernicusMarine/man/cms_get_client_info.Rd |only CopernicusMarine-0.2.6/CopernicusMarine/man/cms_login.Rd | 25 - CopernicusMarine-0.2.6/CopernicusMarine/man/cms_product_details.Rd | 31 -- CopernicusMarine-0.2.6/CopernicusMarine/man/cms_product_metadata.Rd | 28 -- CopernicusMarine-0.2.6/CopernicusMarine/man/cms_product_services.Rd | 11 CopernicusMarine-0.2.6/CopernicusMarine/man/cms_products_list.Rd | 8 CopernicusMarine-0.2.6/CopernicusMarine/man/cms_stac.Rd | 45 --- CopernicusMarine-0.2.6/CopernicusMarine/man/figures/README-leaflet-1.png |binary CopernicusMarine-0.2.6/CopernicusMarine/tests/testthat/helper.r | 38 +- CopernicusMarine-0.2.6/CopernicusMarine/tests/testthat/test_dev.r | 47 +-- CopernicusMarine-0.2.6/CopernicusMarine/tests/testthat/test_login.r |only CopernicusMarine-0.2.6/CopernicusMarine/tests/testthat/test_native.r |only CopernicusMarine-0.2.6/CopernicusMarine/tests/testthat/test_product.r |only CopernicusMarine-0.2.6/CopernicusMarine/tests/testthat/test_subset.r | 43 --- CopernicusMarine-0.2.6/CopernicusMarine/tests/testthat/test_wmts.r | 69 ++++- 39 files changed, 617 insertions(+), 689 deletions(-)
More information about CopernicusMarine at CRAN
Permanent link
Title: NNG (Nanomsg Next Gen) Lightweight Messaging Library
Description: R binding for NNG (Nanomsg Next Gen), a successor to ZeroMQ.
NNG is a socket library for reliable, high-performance messaging over
in-process, IPC, TCP, WebSocket and secure TLS transports. Implements
'Scalability Protocols', a standard for common communications patterns
including publish/subscribe, request/reply and service discovery. As
its own threaded concurrency framework, provides a toolkit for
asynchronous programming and distributed computing. Intuitive 'aio'
objects resolve automatically when asynchronous operations complete,
and synchronisation primitives allow R to wait upon events signalled
by concurrent threads.
Author: Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Hibiki AI Limited [cph],
R Consortium [fnd]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between nanonext versions 1.6.1 dated 2025-06-23 and 1.6.2 dated 2025-07-14
DESCRIPTION | 8 - MD5 | 24 ++--- NEWS.md | 6 + R/context.R | 6 - man/nanonext-package.Rd | 2 man/request.Rd | 6 - src/aio.c | 124 +++++++++++++++++++++--------- src/core.c | 65 --------------- src/nanonext.h | 37 +++++++-- src/ncurl.c | 197 +++++++++++++++++++++++++----------------------- src/sync.c | 48 +++++++++++ src/thread.c | 6 - tests/tests.R | 4 13 files changed, 303 insertions(+), 230 deletions(-)
Title: Power and Sample Size Calculation for Non-Proportional Hazards
and Beyond
Description: Performs power and sample size calculation for non-proportional hazards model using the Fleming-Harrington family of weighted log-rank tests. The sequentially calculated log-rank test score statistics are assumed to have independent increments as characterized in Anastasios A. Tsiatis (1982) <doi:10.1080/01621459.1982.10477898>. The mean and variance of log-rank test score statistics are calculated based on Kaifeng Lu (2021) <doi:10.1002/pst.2069>. The boundary crossing probabilities are calculated using the recursive integration algorithm described in Christopher Jennison and Bruce W. Turnbull (2000, ISBN:0849303168). The package can also be used for continuous, binary, and count data. For continuous data, it can handle missing data through mixed-model for repeated measures (MMRM). In crossover designs, it can estimate direct treatment effects while accounting for carryover effects. For binary data, it can design Simon's 2-stage, modified toxicity probability-2 (mTPI-2), a [...truncated...]
Author: Kaifeng Lu [aut, cre]
Maintainer: Kaifeng Lu <kaifenglu@gmail.com>
Diff between lrstat versions 0.2.14 dated 2025-06-09 and 0.2.15 dated 2025-07-14
DESCRIPTION | 8 MD5 | 123 NAMESPACE | 7 NEWS.md | 32 R/RcppExports.R | 285 + R/getDesignMeans.R | 634 ++- R/getDesignProportions.R | 353 ++ R/getDesignSurvivals.R | 121 R/lrstat-package.R | 4 R/prints.R | 178 - R/wrappers.R | 403 ++ inst/doc/maxcombo.html | 93 inst/shinyApp/app.R | 5544 ++++++++++++++++----------------- man/BOINTable.Rd | 6 man/ClopperPearsonCI.Rd | 6 man/getDesignANOVA.Rd | 2 man/getDesignANOVAContrast.Rd | 2 man/getDesignEquiv.Rd | 14 man/getDesignMeanDiffCarryover.Rd | 7 man/getDesignMeanDiffCarryoverEquiv.Rd | 7 man/getDesignMeanDiffMMRM.Rd | 73 man/getDesignOddsRatio.Rd | 419 +- man/getDesignOneMultinom.Rd | 152 man/getDesignOneProportion.Rd | 8 man/getDesignOneSlope.Rd | 19 man/getDesignOrderedBinom.Rd | 169 - man/getDesignPairedPropMcNemar.Rd | 424 +- man/getDesignRepeatedANOVA.Rd | 6 man/getDesignRiskDiff.Rd | 418 +- man/getDesignRiskRatio.Rd | 417 +- man/getDesignRiskRatioFM.Rd | 422 +- man/getDesignSlopeDiff.Rd | 28 man/getDesignSlopeDiffMMRM.Rd | 55 man/getDesignTwoMultinom.Rd | 166 man/getDesignTwoOrdinal.Rd | 181 - man/getDesignUnorderedBinom.Rd | 154 man/getDesignUnorderedMultinom.Rd | 184 - man/getDesignWilcoxon.Rd | 32 man/hazard_pd.Rd |only man/hazard_sub.Rd |only man/hedgesg.Rd | 10 man/liferegr.Rd | 8 man/logisregr.Rd | 5 man/lrschoenfeld.Rd | 442 +- man/lrsim2e.Rd | 4 man/lrsim2e3a.Rd | 4 man/lrsim3a.Rd | 2 man/lrsimsub.Rd |only man/mTPI2Table.Rd | 5 man/pbvnorm.Rd |only man/phregr.Rd | 5 man/pwexpcuts.Rd | 23 man/pwexploglik.Rd | 117 man/rmvnorm.Rd |only src/RcppExports.cpp | 153 src/kmstat.cpp | 73 src/logistic_regression.cpp | 16 src/logistic_regression.h | 1 src/lrsim.cpp | 1820 ++++++++-- src/lrstat.cpp | 83 src/rmstat.cpp | 80 src/survival_analysis.cpp | 791 +--- src/survival_analysis.h | 8 src/utilities.cpp | 175 - src/utilities.h | 20 65 files changed, 9255 insertions(+), 5746 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-04-29 0.1.1
2025-04-03 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-02-25 0.4.0