Title: Recursive Two-Stage Models to Address Endogeneity
Description: Various recursive two-stage models to address the endogeneity issue of treatment variables in observational study or mediators in experiments. The details of the models are discussed in Peng (2023) <doi:10.1287/isre.2022.1113>.
Author: Jing Peng [aut, cre]
Maintainer: Jing Peng <jing.peng@uconn.edu>
Diff between endogeneity versions 2.1.4 dated 2025-01-16 and 2.1.5 dated 2025-10-12
DESCRIPTION | 9 ++++----- MD5 | 10 +++++----- R/probit_linearRE.R | 4 ++-- build/vignette.rds |binary inst/doc/vignette.html | 11 ++++++----- man/probit_linearRE.Rd | 2 +- 6 files changed, 18 insertions(+), 18 deletions(-)
Title: Time Series Forecasting Using 23 Individual Models
Description: Runs multiple individual time series models, and combines them into an ensembles of time series models. This is mainly used to predict the results of the monthly labor market report from the
United States Bureau of Labor Statistics for virtually any part of the economy reported by the Bureau of Labor Statistics, but it can be easily modified to work with other types of time series data.
For example, the package was used to predict the winning men's and women's time for the 2024 London Marathon.
Author: Russ Conte [aut, cre, cph]
Maintainer: Russ Conte <russconte@mac.com>
Diff between ForecastingEnsembles versions 0.5.0 dated 2025-04-01 and 0.5.1 dated 2025-10-12
DESCRIPTION | 13 MD5 | 10 NAMESPACE | 8 NEWS.md | 2 R/Forecasting.R | 4873 +++++++++++++++++++++++++++++++++++------------------ build/vignette.rds |binary 6 files changed, 3281 insertions(+), 1625 deletions(-)
More information about ForecastingEnsembles at CRAN
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Title: Automatically Runs 18 Individual and 14 Ensembles of Models
Description: Automatically runs 18 individual models and 14 ensembles on numeric data, for a total of 32 models. The package automatically returns complete results on all 32 models,
30 charts and six tables. The user simply provides the tidy data, and answers a few questions (for example, how many times would you like to resample the data).
From there the package randomly splits the data into train, test and validation sets, fits each of models on the training data, makes predictions on the test and validation sets,
measures root mean squared error (RMSE), removes features above a user-set level of Variance Inflation Factor, and has several optional features including scaling
all numeric data, four different ways to handle strings in the data. Perhaps the most significant feature is the package's ability to make predictions
using the 32 pre trained models on totally new (untrained) data if the user selects that feature. This feature alone represents a very effective solution
to the issue of reprodu [...truncated...]
Author: Russ Conte [aut, cre, cph]
Maintainer: Russ Conte <russconte@mac.com>
Diff between NumericEnsembles versions 0.10.1 dated 2025-08-24 and 0.10.3 dated 2025-10-12
DESCRIPTION | 8 - MD5 | 11 +- NEWS.md | 6 + README.md | 197 +++++++++++++++++++++++++++---------------------- build/vignette.rds |binary inst/doc/Template.Rmd |only inst/doc/Template.html |only vignettes/Template.Rmd |only 8 files changed, 129 insertions(+), 93 deletions(-)
More information about NumericEnsembles at CRAN
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Title: Ecological Inference by Linear Programming under Homogeneity
Description: Provides a bunch of algorithms based on linear programming for estimating, under
the homogeneity hypothesis, RxC ecological contingency tables (or vote transition matrices)
using mainly aggregate data (from voting units).
References:
Pavía and Romero (2024) <doi:10.1177/00491241221092725>.
Pavía and Romero (2024) <doi:10.1093/jrsssa/qnae013>.
Pavía (2023) <doi:10.1007/s43545-023-00658-y>.
Pavía (2024) <doi:10.1080/0022250X.2024.2423943>.
Pavía (2024) <doi:10.1177/07591063241277064>.
Pavía and Penadés (2024). A bottom-up approach for ecological inference.
Romero, Pavía, Martín and Romero (2020) <doi:10.1080/02664763.2020.1804842>.
Acknowledgements:
The authors wish to thank Consellería de Educación, Cultura, Universidades y Empleo, Generalitat Valenciana (grants AICO/2021/257, CIAICO/2023/031) and MICIU/AEI/10.13039/501100011033/FEDER, UE (grant PID2021-128228NB-I00) for supporting this research.
Author: Jose M. Pavia [aut, cre] ,
Rafael Romero [aut]
Maintainer: Jose M. Pavia <jose.m.pavia@uv.es>
Diff between lphom versions 0.3.5-6 dated 2025-04-11 and 0.3.5-7 dated 2025-10-12
DESCRIPTION | 11 ++++--- MD5 | 10 +++---- NEWS.md | 6 +++- R/rslphom.R | 73 ++++++++++++++++++++++++++++++++++++++++++++++++++--- man/France2017P.Rd | 2 - man/rslphom.Rd | 17 ++++++++++-- 6 files changed, 100 insertions(+), 19 deletions(-)
Title: Automatically Runs 24 Logistic Models (Individual and Ensembles)
Description: Automatically returns 24 logistic models including 13 individual models and 11 ensembles of models of logistic data. The package also returns 25 plots, 5 tables, and a summary report. The package automatically
builds all 24 models, reports all results, and provides graphics to show how the models performed. This can be used for a wide range of data, such as sports or medical data. The package includes medical data (the Pima Indians data set), and
information about the performance of Lebron James. The package can be used to analyze many other examples, such as stock market data. The package automatically returns many values for each model, such as
True Positive Rate, True Negative Rate, False Positive Rate, False Negative Rate, Positive Predictive Value, Negative Predictive Value, F1 Score, Area Under the Curve. The package also returns 36 Receiver
Operating Characteristic (ROC) curves for each of the 24 models.
Author: Russ Conte [aut, cre, cph]
Maintainer: Russ Conte <russconte@mac.com>
Diff between LogisticEnsembles versions 0.8.0 dated 2025-08-31 and 0.8.2 dated 2025-10-12
LogisticEnsembles-0.8.0/LogisticEnsembles/inst/doc/LogisticEnsembles-vignette.Rmd |only LogisticEnsembles-0.8.0/LogisticEnsembles/inst/doc/LogisticEnsembles-vignette.html |only LogisticEnsembles-0.8.0/LogisticEnsembles/vignettes/LogisticEnsembles-vignette.Rmd |only LogisticEnsembles-0.8.0/LogisticEnsembles/vignettes/Summary_report.html |only LogisticEnsembles-0.8.0/LogisticEnsembles/vignettes/Summary_report.pdf |only LogisticEnsembles-0.8.2/LogisticEnsembles/DESCRIPTION | 14 LogisticEnsembles-0.8.2/LogisticEnsembles/MD5 | 54 LogisticEnsembles-0.8.2/LogisticEnsembles/NEWS.md | 2 LogisticEnsembles-0.8.2/LogisticEnsembles/R/Logistic.R |11038 +++++----- LogisticEnsembles-0.8.2/LogisticEnsembles/build/vignette.rds |binary LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_0_The_Hello_World_of_LogisticEnsembles.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_0_The_Hello_World_of_LogisticEnsembles.html |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_1_data_colnum_numresamples.R |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_1_data_colnum_numresamples.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_1_data_colnum_numresamples.html |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_2_remove_VIF_greater_than.R |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_2_remove_VIF_greater_than.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_2_remove_VIF_greater_than.html |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_3_remove_ensemble_correlations_greater_than.R |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_3_remove_ensemble_correlations_greater_than.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_3_remove_ensemble_correlations_greater_than.html |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_4_save_all_trained_models_and_plots.R |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_4_save_all_trained_models_and_plots.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_4_save_all_trained_models_and_plots.html |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_5_how_to_handle_strings.R |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_5_how_to_handle_strings.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_5_how_to_handle_strings.html |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_6_set_seed.R |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_6_set_seed.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_6_set_seed.html |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_7_do_you_have_new_data.R |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_7_do_you_have_new_data.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_7_do_you_have_new_data.html |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_8_Capstone_Using_multiple_features.R |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_8_Capstone_Using_multiple_features.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_8_Capstone_Using_multiple_features.html |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_Report_template.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/inst/doc/vignette_Report_template.html |only LogisticEnsembles-0.8.2/LogisticEnsembles/vignettes/Template_for_a_presentation.qmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/vignettes/Template_using_LogisticEnsembles.pdf |only LogisticEnsembles-0.8.2/LogisticEnsembles/vignettes/Template_using_LogisticEnsembles.qmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/vignettes/vignette_0_The_Hello_World_of_LogisticEnsembles.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/vignettes/vignette_1_data_colnum_numresamples.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/vignettes/vignette_2_remove_VIF_greater_than.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/vignettes/vignette_3_remove_ensemble_correlations_greater_than.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/vignettes/vignette_4_save_all_trained_models_and_plots.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/vignettes/vignette_5_how_to_handle_strings.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/vignettes/vignette_6_set_seed.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/vignettes/vignette_7_do_you_have_new_data.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/vignettes/vignette_8_Capstone_Using_multiple_features.Rmd |only LogisticEnsembles-0.8.2/LogisticEnsembles/vignettes/vignette_Report_template.Rmd |only 51 files changed, 5573 insertions(+), 5535 deletions(-)
More information about LogisticEnsembles at CRAN
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Title: Search Download and Handle Data from Copernicus Marine Service
Information
Description: Subset and download data from EU Copernicus Marine
Service Information: <https://data.marine.copernicus.eu>.
Import data on the oceans physical and biogeochemical state
from Copernicus into R without the need of external software.
Author: Pepijn de Vries [aut, cre, dtc]
Maintainer: Pepijn de Vries <pepijn.devries@outlook.com>
Diff between CopernicusMarine versions 0.3.1 dated 2025-09-27 and 0.3.2 dated 2025-10-12
DESCRIPTION | 12 MD5 | 21 + NAMESPACE | 1 NEWS.md | 7 R/cms_download_subset.r | 32 +- R/translate.R |only README.md | 404 +++++++++++++++---------------- build |only inst |only man/cms_translate.Rd |only man/figures/README-download-subset-1.png |binary man/figures/README-leaflet-1.png |binary vignettes |only 13 files changed, 254 insertions(+), 223 deletions(-)
More information about CopernicusMarine at CRAN
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Title: Automatically Builds 12 Classification Models
Description: Automatically builds 12 classification models from data. The package returns 26 plots, 5 tables and a summary report.
The package automatically builds six individual classification models, including error (RMSE) and predictions. That data is used to create an ensemble, which is then modeled using six methods.
The process is repeated as many times as the user requests. The mean of the results are presented in a summary table.
The package returns the confusion matrices for all 12 models, tables of the correlation of the numeric data, the results of the variance inflation process, the head of the ensemble and the head of the data frame.
Author: Russ Conte [aut, cre, cph]
Maintainer: Russ Conte <russconte@mac.com>
Diff between ClassificationEnsembles versions 0.6.0 dated 2025-07-31 and 0.7.0 dated 2025-10-12
ClassificationEnsembles-0.6.0/ClassificationEnsembles/vignettes/Accuracy_by_model_and_resample.png |only ClassificationEnsembles-0.6.0/ClassificationEnsembles/vignettes/Accuracy_including_train_and_holdout.png |only ClassificationEnsembles-0.6.0/ClassificationEnsembles/vignettes/Boxplots_of_numeric_data.png |only ClassificationEnsembles-0.6.0/ClassificationEnsembles/vignettes/Close_up_of_.accuracy_by_model.png |only ClassificationEnsembles-0.6.0/ClassificationEnsembles/vignettes/Duration_barchart.png |only ClassificationEnsembles-0.6.0/ClassificationEnsembles/vignettes/Histograms_of_numeric_data.png |only ClassificationEnsembles-0.6.0/ClassificationEnsembles/vignettes/Model_accuracy.png |only ClassificationEnsembles-0.6.0/ClassificationEnsembles/vignettes/Summary_report.jpg |only ClassificationEnsembles-0.6.0/ClassificationEnsembles/vignettes/Summary_report.png |only ClassificationEnsembles-0.6.0/ClassificationEnsembles/vignettes/Target_vs_each_feature.png |only ClassificationEnsembles-0.6.0/ClassificationEnsembles/vignettes/closeup_of_best_summary_tables.jpg |only ClassificationEnsembles-0.6.0/ClassificationEnsembles/vignettes/closeup_of_best_summary_tables.png |only ClassificationEnsembles-0.6.0/ClassificationEnsembles/vignettes/head_carseats.png |only ClassificationEnsembles-0.7.0/ClassificationEnsembles/DESCRIPTION | 14 ClassificationEnsembles-0.7.0/ClassificationEnsembles/MD5 | 41 ClassificationEnsembles-0.7.0/ClassificationEnsembles/NEWS.md | 6 ClassificationEnsembles-0.7.0/ClassificationEnsembles/R/ClassificationEnsembles.R | 1502 +--------- ClassificationEnsembles-0.7.0/ClassificationEnsembles/README.md | 65 ClassificationEnsembles-0.7.0/ClassificationEnsembles/build/vignette.rds |binary ClassificationEnsembles-0.7.0/ClassificationEnsembles/inst/doc/ClassificationEnsembles-vignette.Rmd | 95 ClassificationEnsembles-0.7.0/ClassificationEnsembles/inst/doc/ClassificationEnsembles-vignette.html | 135 ClassificationEnsembles-0.7.0/ClassificationEnsembles/inst/doc/Demo_Report.Rmd |only ClassificationEnsembles-0.7.0/ClassificationEnsembles/inst/doc/Demo_Report.html |only ClassificationEnsembles-0.7.0/ClassificationEnsembles/vignettes/Boxplots.jpeg |only ClassificationEnsembles-0.7.0/ClassificationEnsembles/vignettes/ClassificationEnsembles-vignette.Rmd | 95 ClassificationEnsembles-0.7.0/ClassificationEnsembles/vignettes/Demo_Report.Rmd |only ClassificationEnsembles-0.7.0/ClassificationEnsembles/vignettes/Duration_barchart.jpeg |only ClassificationEnsembles-0.7.0/ClassificationEnsembles/vignettes/Histograms_of_numeric_columns.jpeg |only ClassificationEnsembles-0.7.0/ClassificationEnsembles/vignettes/Model_accuracy.jpeg |only ClassificationEnsembles-0.7.0/ClassificationEnsembles/vignettes/Model_accuracy_barchart.jpeg |only ClassificationEnsembles-0.7.0/ClassificationEnsembles/vignettes/Summary_report.jpeg.png |only ClassificationEnsembles-0.7.0/ClassificationEnsembles/vignettes/Summary_report_example.jpeg |only ClassificationEnsembles-0.7.0/ClassificationEnsembles/vignettes/Summary_report_example.jpeg.png |only ClassificationEnsembles-0.7.0/ClassificationEnsembles/vignettes/Target_vs_each_feature.jpeg |only 34 files changed, 493 insertions(+), 1460 deletions(-)
More information about ClassificationEnsembles at CRAN
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Title: Langevin Analysis in One and Two Dimensions
Description: Estimate drift and diffusion functions from time series and
generate synthetic time series from given drift and diffusion coefficients.
Author: Philip Rinn [aut, cre],
Pedro G. Lind [aut],
David Bastine [ctb]
Maintainer: Philip Rinn <philip.rinn@uni-oldenburg.de>
Diff between Langevin versions 1.3.2 dated 2024-07-01 and 1.3.3 dated 2025-10-12
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/Langevin.pdf |binary src/Langevin1D.cpp | 4 ++-- src/Langevin2D.cpp | 4 ++-- 6 files changed, 16 insertions(+), 16 deletions(-)
Title: Climate Tools (Series Homogenization and Derived Products)
Description: Functions for the quality control, homogenization and missing data filling of climatological series and to obtain climatological summaries and grids from the results. Also functions to display wind-roses, meteograms, Walter&Lieth diagrams, and more.
Author: Jose A. Guijarro [aut, cre]
Maintainer: Jose A. Guijarro <jaguijarro21@gmail.com>
Diff between climatol versions 4.2-0 dated 2025-05-28 and 4.3-0 dated 2025-10-12
DESCRIPTION | 8 - MD5 | 20 ++- NEWS | 16 ++- R/clihomog.R | 249 ++++++++++++++++++++++++++--------------------- inst/files/bogusERA5.txt |only man/csv2climatol.Rd | 4 man/dahgrid.Rd | 2 man/dahstat.Rd | 2 man/homogen.Rd | 12 +- man/rclimdex2climatol.Rd | 39 +++---- man/rean2climatol.Rd |only man/weekendaccum.Rd | 4 12 files changed, 206 insertions(+), 150 deletions(-)
Title: Calculating Bilateral and Multilateral Price Indexes
Description: Preparing a scanner data set for price dynamics calculations (data selecting, data classification, data matching, data filtering). Computing bilateral and multilateral indexes. For details on these methods see: Diewert and Fox (2020)
<doi:10.1080/07350015.2020.1816176>, Białek (2019) <doi:10.2478/jos-2019-0014> or Białek (2020) <doi:10.2478/jos-2020-0037>.
Author: Jacek Bialek [aut, cre]
Maintainer: Jacek Bialek <jacek.bialek@uni.lodz.pl>
Diff between PriceIndices versions 0.2.4 dated 2025-09-12 and 0.2.5 dated 2025-10-12
DESCRIPTION | 6 MD5 | 12 - NEWS.md | 6 R/f_data_processing.R | 8 build/vignette.rds |binary inst/doc/PriceIndices.R | 496 ++++++++++++++++++++++----------------------- inst/doc/PriceIndices.html | 5 7 files changed, 271 insertions(+), 262 deletions(-)
Title: Analysis of Antimicrobial Minimum Inhibitory Concentration Data
Description: Analyse, plot, and tabulate antimicrobial minimum inhibitory concentration (MIC) data.
Validate the results of an MIC experiment by comparing observed MIC values to
a gold standard assay, in line with standards from the International Organization for
Standardization (2021) <https://www.iso.org/standard/79377.html>. Perform MIC prediction from
whole genome sequence data stored in the Pathosystems Resource Integration Center (2013)
<doi:10.1093/nar/gkt1099> database or locally.
Author: Alessandro Gerada [aut, cre, cph]
Maintainer: Alessandro Gerada <alessandro.gerada@liverpool.ac.uk>
Diff between MIC versions 1.1.0 dated 2025-06-05 and 1.2.0 dated 2025-10-12
DESCRIPTION | 10 - MD5 | 50 ++++---- NEWS.md | 18 +++ R/RcppExports.R | 23 +++ R/cv.R | 6 + R/data_converters.R | 42 +++++++ R/kmer_batch.R | 90 +++++++++++++++ R/meta_data.R | 182 ++++++++++++++++++++++++++++--- R/patric.R | 138 ++++++++++++++++++++--- README.md | 20 +++ build/partial.rdb |binary man/compare_mic.Rd | 10 + man/download_patric_db.Rd | 2 man/essential_agreement.Rd | 14 ++ man/figures/README-fig-val-ea-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/force_mic.Rd | 23 +++ man/genome_to_libsvm.Rd | 15 ++ man/kmers.Rd | 16 ++ man/reverse_complement.Rd | 6 - man/squeezed_index_to_str.Rd | 6 - man/squeezed_mers.Rd | 6 - man/unsqueezed_index_to_str.Rd | 6 - man/unsqueezed_mers.Rd | 6 - src/kmers.cpp | 23 +++ tests/testthat/test-meta_data.R | 109 ++++++++++++++---- 26 files changed, 722 insertions(+), 99 deletions(-)
Title: Data and Functions Used in Linear Models and Regression with R:
An Integrated Approach
Description: Data files and a few functions used in the book
'Linear Models and Regression with R: An Integrated Approach'
by Debasis Sengupta and Sreenivas Rao Jammalamadaka (2019).
Author: Debasis Sengupta [aut],
S. Rao Jammalamadaka [aut],
Jinwen Qiu [aut],
Kaushik Jana [cre]
Maintainer: Kaushik Jana <kaushikjana11@gmail.com>
This is a re-admission after prior archival of version 1.2 dated 2019-04-09
Diff between lmreg versions 1.2 dated 2019-04-09 and 1.3 dated 2025-10-12
lmreg-1.2/lmreg/R/lmreg-internal.R |only lmreg-1.3/lmreg/DESCRIPTION | 35 +++++++++++++++++++++++++++-------- lmreg-1.3/lmreg/MD5 | 3 +-- 3 files changed, 28 insertions(+), 10 deletions(-)
Title: Generalized Additive Models with Hyper Column
Description: Generalized additive models with a numeric hyper column
tabulated on a common grid. Sign-adjustment based on the
correlation of model prediction and a selected slice of the
hyper column. Visualization of the integrand surface over the
hyper column.
Author: Tingting Zhan [aut, cre] ,
Inna Chervoneva [aut] ,
Erjia Cui [ctb]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between hyper.gam versions 0.1.2 dated 2025-06-27 and 0.2.0 dated 2025-10-12
DESCRIPTION | 17 MD5 | 27 NAMESPACE | 1 R/0PACKAGE.R | 5 R/hyper_gam.R | 14 R/integrandSurface.R | 4 R/onLoad_parallel.R | 12 inst/CITATION |only inst/doc/applications.R | 149 -- inst/doc/applications.html | 2822 +++------------------------------------------ inst/doc/applications.qmd | 375 ----- man/hyper.gam-package.Rd | 7 man/integrandSurface.Rd | 4 vignettes/applications.qmd | 375 ----- vignettes/hypergam.bib | 260 ---- 15 files changed, 425 insertions(+), 3647 deletions(-)
Title: R Interface to 'Apache Tika'
Description: Extract text or metadata from over a thousand file types, using Apache Tika <https://tika.apache.org/>. Get either plain text or structured XHTML content.
Author: Sasha Goodman [aut, cre],
The Apache Software Foundation [aut, cph],
Julia Silge [rev] ,
David Gohel [rev]
Maintainer: Sasha Goodman <goodmansasha@gmail.com>
Diff between rtika versions 2.7.0 dated 2023-05-04 and 3.2.3 dated 2025-10-12
DESCRIPTION | 10 MD5 | 30 +- NEWS.md | 9 R/install_tika.R | 17 - R/java.R | 4 R/rtika.R | 4 R/tika.R | 25 -- R/zzz.R | 31 +- README.md | 8 build/vignette.rds |binary inst/doc/rtika_introduction.R | 348 +++++++++++++++--------------- inst/doc/rtika_introduction.html | 451 ++++++++++++--------------------------- man/install_tika.Rd | 13 - man/java.Rd | 4 man/rtika.Rd | 26 ++ man/tika.Rd | 2 16 files changed, 438 insertions(+), 544 deletions(-)
Title: A Comprehensive Toolkit for Working with Encrypted Parquet Files
Description: Utilities for reading, writing, and managing RCDF files, including encryption and decryption support. It offers a flexible interface for handling data stored in encrypted Parquet format, along with metadata extraction, key management, and secure operations using Advanced Encryption Standard (AES) and Rivest-Shamir-Adleman (RSA) encryption.
Author: Bhas Abdulsamad [aut, cre, cph]
Maintainer: Bhas Abdulsamad <aeabdulsamad@gmail.com>
Diff between rcdf versions 0.1.0 dated 2025-08-28 and 0.1.1 dated 2025-10-12
DESCRIPTION | 11 +- MD5 | 72 ++++++++------- NAMESPACE | 4 R/helpers.R | 10 +- R/metadata.R | 116 ++++++++++++++++++++++--- R/read_parquet.R | 28 +++--- R/read_rcdf.R | 140 +++++++++++++++++++++++++------ R/utils.R | 92 +++++++++++++++++--- R/write_parquet.R | 60 +++++++++++-- R/write_rcdf.R | 65 +++++++++++--- R/write_rcdf_as.R | 64 +++++++------- R/zzz.R | 4 README.md | 38 ++++---- inst/doc/rcdf.R | 41 ++++++--- inst/doc/rcdf.Rmd | 87 ++++++++++--------- inst/doc/rcdf.html | 167 ++++++++++++++++++++----------------- man/add_metadata.Rd | 24 ++--- man/as_rcdf.Rd | 8 - man/generate_pw.Rd |only man/generate_rsa_keys.Rd |only man/get_data_dictionary.Rd |only man/get_rcdf_metadata.Rd |only man/rcdf_list.Rd | 14 +-- man/read_env.Rd | 8 - man/read_parquet.Rd | 20 +++- man/read_rcdf.Rd | 21 +++- man/write_parquet.Rd | 6 - man/write_rcdf.Rd | 17 ++- man/write_rcdf_as.Rd | 8 - man/write_rcdf_csv.Rd | 8 - man/write_rcdf_dta.Rd | 10 +- man/write_rcdf_json.Rd | 8 - man/write_rcdf_parquet.Rd | 15 ++- man/write_rcdf_sav.Rd | 10 +- man/write_rcdf_sqlite.Rd | 4 man/write_rcdf_tsv.Rd | 8 - man/write_rcdf_xlsx.Rd | 8 - tests/testthat/test-read_parquet.R | 2 vignettes/rcdf.Rmd | 87 ++++++++++--------- 39 files changed, 867 insertions(+), 418 deletions(-)
Title: Multiple Testing for Hypotheses with Hierarchical or Group
Structure
Description: Performs multiple testing corrections that take specific structure
of hypotheses into account, as described in Sankaran & Holmes (2014)
<doi:10.18637/jss.v059.i13>.
Author: Kris Sankaran [aut, cre]
Maintainer: Kris Sankaran <ksankaran@wisc.edu>
Diff between structSSI versions 1.2.0 dated 2025-09-27 and 1.2.1 dated 2025-10-12
DESCRIPTION | 6 +++--- MD5 | 4 ++-- tests/testthat/test_gbh.R | 20 +++++++++++--------- 3 files changed, 16 insertions(+), 14 deletions(-)
Title: Access Colombian Data via APIs and Curated Datasets
Description: Provides a comprehensive interface to access diverse public data about
Colombia through multiple APIs and curated datasets. The package integrates
four different APIs: 'API-Colombia' for Colombian-specific data including
geography, culture, tourism, and government information; 'World Bank API'
for economic and demographic indicators; 'Nager.Date' for public holidays;
and 'REST Countries API' for general country information. The package enables
users to explore various aspects of Colombia such as geographic locations,
cultural attractions, economic indicators, demographic data, and public
holidays. Additionally, 'ColombiAPI' includes curated datasets covering
Bogota air stations, business and holiday dates, public schools, Colombian
coffee exports, cannabis licenses, Medellin rainfall, malls in Bogota, as
well as datasets on indigenous languages, student admissions and school
statistics, forest liana mortality, municipal and regional data, connectivity
and digital infrastructure, progra [...truncated...]
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between ColombiAPI versions 0.3.0 dated 2025-09-29 and 0.3.1 dated 2025-10-12
DESCRIPTION | 6 MD5 | 148 +++++++++--------- NAMESPACE | 1 NEWS.md | 14 + R/colombiapi-package.R | 2 R/data-documentation.R | 2 R/get_colombia_airports.R | 2 R/get_colombia_attractions.R | 2 R/get_colombia_child_mortality.R | 2 R/get_colombia_cities.R | 2 R/get_colombia_cpi.R | 2 R/get_colombia_departments.R | 2 R/get_colombia_energy_use.R | 2 R/get_colombia_gdp.R | 2 R/get_colombia_holidays.R | 2 R/get_colombia_hospital_beds.R | 2 R/get_colombia_invasive_species.R | 2 R/get_colombia_life_expectancy.R | 68 ++++++-- R/get_colombia_literacy_rate.R | 2 R/get_colombia_native_communities.R | 2 R/get_colombia_natural_areas.R | 2 R/get_colombia_population.R | 2 R/get_colombia_presidents.R | 2 R/get_colombia_radios.R | 2 R/get_colombia_regions.R | 2 R/get_colombia_typical_dishes.R | 2 R/get_colombia_unemployment.R | 2 R/get_country_info_co.R | 2 R/utils.R | 2 R/view_datasets_ColombiAPI.R | 2 inst/CITATION | 2 man/get_colombia_life_expectancy.Rd | 10 - tests/testthat/test-Bogota_airstations_df.R | 2 tests/testthat/test-Bogota_business_Date.R | 2 tests/testthat/test-Bogota_holidays_Date.R | 2 tests/testthat/test-Bogota_malls_tbl_df.R | 2 tests/testthat/test-Bucaramanga_wifi_tbl_df.R | 2 tests/testthat/test-Cannabis_Licenses_tbl_df.R | 2 tests/testthat/test-Cartagena_wifi_tbl_df.R | 2 tests/testthat/test-Colombia_coffee_tbl_df.R | 2 tests/testthat/test-Medellin_rain_tbl_df.R | 2 tests/testthat/test-Tulua_Public_Schools_tbl_df.R | 2 tests/testthat/test-admitted_students_df.R | 2 tests/testthat/test-dead_lianas_df.R | 2 tests/testthat/test-digital_centers_tbl_df.R | 2 tests/testthat/test-digital_graduates_tbl_df.R | 2 tests/testthat/test-foreign_visitors_tbl_df.R | 2 tests/testthat/test-gdp_departments_tbl_df.R | 2 tests/testthat/test-get_colombia_airports.R | 2 tests/testthat/test-get_colombia_attractions.R | 2 tests/testthat/test-get_colombia_child_mortality.R | 2 tests/testthat/test-get_colombia_cities.R | 2 tests/testthat/test-get_colombia_cpi.R | 2 tests/testthat/test-get_colombia_departments.R | 2 tests/testthat/test-get_colombia_energy_use.R | 2 tests/testthat/test-get_colombia_gdp.R | 2 tests/testthat/test-get_colombia_holidays.R | 2 tests/testthat/test-get_colombia_hospital_beds.R | 2 tests/testthat/test-get_colombia_invasive_species.R | 2 tests/testthat/test-get_colombia_life_expectancy.R | 94 +++++++---- tests/testthat/test-get_colombia_literacy_rate.R | 83 ++++++---- tests/testthat/test-get_colombia_native_communities.R | 2 tests/testthat/test-get_colombia_natural_areas.R | 2 tests/testthat/test-get_colombia_population.R | 2 tests/testthat/test-get_colombia_presidents.R | 2 tests/testthat/test-get_colombia_radios.R | 2 tests/testthat/test-get_colombia_regions.R | 2 tests/testthat/test-get_colombia_typical_dishes.R | 2 tests/testthat/test-get_colombia_unemployment.R | 2 tests/testthat/test-get_country_info_co.R | 2 tests/testthat/test-indigenous_vocabulary_df.R | 2 tests/testthat/test-municipalities_tbl_df.R | 2 tests/testthat/test-school_levels_df.R | 2 tests/testthat/test-vehicle_count_tbl_df.R | 2 tests/testthat/test-view_datasets_ColombiAPI.R | 2 75 files changed, 336 insertions(+), 222 deletions(-)
Title: High Performance Remote File System, Database and 'Geospatial'
Access Using 'duckdb'
Description: Provides friendly wrappers for creating 'duckdb'-backed connections
to tabular datasets ('csv', parquet, etc) on local or remote file systems.
This mimics the behaviour of "open_dataset" in the 'arrow' package,
but in addition to 'S3' file system also generalizes to any list of 'http' URLs.
Author: Carl Boettiger [aut, cre] ,
Michael D. Sumner [ctb]
Maintainer: Carl Boettiger <cboettig@gmail.com>
Diff between duckdbfs versions 0.1.1 dated 2025-07-17 and 0.1.2 dated 2025-10-12
DESCRIPTION | 8 +- MD5 | 52 +++++++------- NEWS.md | 6 + R/cached_connection.R | 60 +++++++--------- R/duckdb_config.R | 167 ++++++++++++++++++++++++----------------------- R/h3.R | 18 ++--- R/to_geojson.R |only R/write_dataset.R | 127 ++++++----------------------------- R/write_geo.R |only README.md | 2 inst/WORDLIST | 11 +++ man/as_view.Rd | 2 man/cached_connection.Rd | 8 +- man/close_connection.Rd | 2 man/duckdb_config.Rd | 4 - man/duckdb_extensions.Rd | 2 man/duckdb_get_config.Rd | 2 man/duckdb_reset.Rd | 2 man/duckdb_s3_config.Rd | 2 man/load_h3.Rd | 9 +- man/open_dataset.Rd | 2 man/spatial_join.Rd | 2 man/st_read_meta.Rd | 2 man/to_geojson.Rd | 7 + man/to_h3j.Rd | 2 man/to_sf.Rd | 2 man/write_dataset.Rd | 4 - man/write_geo.Rd | 15 +++- 28 files changed, 239 insertions(+), 281 deletions(-)
Title: R and C++ Interfaces to 'spdlog' C++ Header Library for Logging
Description: The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides
many desirable features. This package bundles these header files for easy use by R packages
from both their R and C or C++ code. Explicit use via 'LinkingTo:' is also supported. Also
see the 'spdl' package which enhanced this package with a consistent R and C++ interface.
Author: Dirk Eddelbuettel [aut, cre] ,
Gabi Melman [aut] ,
Victor Zverovic [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSpdlog versions 0.0.22 dated 2025-05-09 and 0.0.23 dated 2025-10-12
ChangeLog | 14 DESCRIPTION | 9 MD5 | 71 +- README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/CITATION |only inst/NEWS.Rd | 9 inst/doc/introduction.html | 2 inst/include/spdlog/cfg/helpers-inl.h | 13 inst/include/spdlog/details/file_helper-inl.h | 2 inst/include/spdlog/details/os-inl.h | 21 inst/include/spdlog/details/registry-inl.h | 2 inst/include/spdlog/details/tcp_client-windows.h | 94 ++ inst/include/spdlog/details/tcp_client.h | 81 ++ inst/include/spdlog/details/thread_pool-inl.h | 5 inst/include/spdlog/fmt/bundled/args.h | 4 inst/include/spdlog/fmt/bundled/base.h | 179 ++--- inst/include/spdlog/fmt/bundled/chrono.h | 113 --- inst/include/spdlog/fmt/bundled/color.h | 36 - inst/include/spdlog/fmt/bundled/compile.h | 198 +++-- inst/include/spdlog/fmt/bundled/format-inl.h | 125 +-- inst/include/spdlog/fmt/bundled/format.h | 795 +++++++++++++---------- inst/include/spdlog/fmt/bundled/os.h | 3 inst/include/spdlog/fmt/bundled/ostream.h | 4 inst/include/spdlog/fmt/bundled/printf.h | 59 - inst/include/spdlog/fmt/bundled/ranges.h | 48 - inst/include/spdlog/fmt/bundled/std.h | 423 +++++------- inst/include/spdlog/fmt/bundled/xchar.h | 73 -- inst/include/spdlog/fmt/fmt.h | 4 inst/include/spdlog/logger-inl.h | 6 inst/include/spdlog/logger.h | 6 inst/include/spdlog/sinks/ansicolor_sink.h | 2 inst/include/spdlog/sinks/ringbuffer_sink.h | 6 inst/include/spdlog/sinks/tcp_sink.h | 18 inst/include/spdlog/sinks/wincolor_sink.h | 8 inst/include/spdlog/version.h | 4 37 files changed, 1347 insertions(+), 1092 deletions(-)