Title: Full Factorial Breeding Analysis
Description: We facilitate the analysis of full factorial mating designs with mixed-effects models. The package contains six vignettes containing detailed examples.
Author: Aimee Lee Houde [aut, cre],
Trevor Pitcher [aut]
Maintainer: Aimee Lee Houde <aimee.lee.houde@gmail.com>
Diff between fullfact versions 1.5.2 dated 2024-02-04 and 1.6 dated 2026-03-15
DESCRIPTION | 14 ++-- MD5 | 56 ++++++++--------- NAMESPACE | 17 ++--- build/partial.rdb |binary build/vignette.rds |binary data/chinook_bootL.rda |binary data/chinook_bootS.rda |binary data/chinook_jackL.rda |binary data/chinook_jackS.rda |binary data/chinook_length.rda |binary data/chinook_resampL.rda |binary data/chinook_resampS.rda |binary data/chinook_survival.rda |binary inst/doc/v1_simple_normal.R | 6 - inst/doc/v1_simple_normal.html | 81 ++++++++++++------------- inst/doc/v2_advanced_normal.R | 6 - inst/doc/v2_advanced_normal.html | 87 +++++++++++++-------------- inst/doc/v3_expert_normal.R | 6 - inst/doc/v3_expert_normal.html | 111 +++++++++++++++++------------------ inst/doc/v4_simple_non_normal.Rmd | 84 +++++++++++++------------- inst/doc/v4_simple_non_normal.html | 57 +++++++++-------- inst/doc/v5_advanced_non_normal.Rmd | 86 +++++++++++++-------------- inst/doc/v5_advanced_non_normal.html | 59 +++++++++--------- inst/doc/v6_expert_non_normal.Rmd | 104 ++++++++++++++++---------------- inst/doc/v6_expert_non_normal.html | 77 ++++++++++++------------ vignettes/precompile.R | 4 - vignettes/v4_simple_non_normal.Rmd | 84 +++++++++++++------------- vignettes/v5_advanced_non_normal.Rmd | 86 +++++++++++++-------------- vignettes/v6_expert_non_normal.Rmd | 104 ++++++++++++++++---------------- 29 files changed, 570 insertions(+), 559 deletions(-)
Title: Feature-Based Clustering of Longitudinal Trajectories
Description: Identifies clusters of individual longitudinal trajectories. In the spirit of Leffondre et al. (2004), the procedure involves identifying each trajectory to a point in the space of measures. In this context, a measure is a quantity meant to capture a certain characteristic feature of the trajectory. The points in the space of measures are then clustered using a version of the Spectral Clustering algorithm.
Author: Marie-Pierre Sylvestre [aut],
Laurence Boulanger [aut, cre],
Gillis Delmas Tchouangue Dinkou [ctb],
Dan Vatnik [ctb]
Maintainer: Laurence Boulanger <laurence.boulanger@umontreal.ca>
Diff between traj versions 3.0.0 dated 2026-01-28 and 3.0.1 dated 2026-03-15
DESCRIPTION | 8 +- MD5 | 16 ++--- NEWS.md | 25 ++++--- R/plot.trajClusters.R | 148 +++++++++++++++++++++++++++++++++-------------- R/trajClusters.R | 17 +++++ README.md | 13 +--- man/plot.trajClusters.Rd | 10 ++- man/traj-package.Rd | 2 man/trajClusters.Rd | 3 9 files changed, 164 insertions(+), 78 deletions(-)
Title: Precision Profile Weighted Deming Regression
Description: Weighted Deming regression, also known as 'errors-in-variable'
regression, is applied with suitable weights. Weights are modeled via a
precision profile; thus the methods implemented here are referred to as
precision profile weighted Deming (PWD) regression. The package covers
two settings – one where the precision profiles are known either from
external studies or from adequate replication of the X and Y readings,
and one in which there is a plausible functional form for the precision
profiles but the exact (unknown) function must be estimated from the
(generally singlicate) readings.
The function set includes tools for: estimated standard errors (via
jackknifing); standardized-residual analysis function with regression
diagnostic tools for normality, linearity and constant variance; and an
outlier analysis identifying significant outliers for closer investigation.
The following reference provides further information on mathematical
derivations and applications.
Hawkins, D.M., and J.J [...truncated...]
Author: Douglas M. Hawkins [aut, cph],
Jessica J. Kraker [aut, cre]
Maintainer: Jessica J. Kraker <krakerjj@uwec.edu>
Diff between ppwdeming versions 2.0.0 dated 2026-01-09 and 2.1.0 dated 2026-03-15
DESCRIPTION | 14 +-- MD5 | 29 +++--- NAMESPACE | 1 NEWS.md | 10 ++ R/PWD_RL.r | 5 - R/PWD_get_gh.r | 5 - R/PWD_inference.r | 5 - R/PWD_outlier.r | 215 ++++++++++++++++++++++++--------------------------- R/PWD_resi.r | 5 - inst |only man/PWD_RL.Rd | 5 - man/PWD_get_gh.Rd | 5 - man/PWD_inference.Rd | 5 - man/PWD_outlier.Rd | 22 ++--- man/PWD_resi.Rd | 5 - tests |only 16 files changed, 175 insertions(+), 156 deletions(-)
Title: Regression under Interference in Connected Populations
Description: An implementation of generalized linear models (GLMs) for studying relationships among attributes in connected populations, where responses of connected units can be dependent, as introduced by Fritz et al. (2025) <doi:10.1080/01621459.2025.2565851>. 'igml' extends GLMs for independent responses to dependent responses and can be used for studying spillover in connected populations and other network-mediated phenomena.
Author: Cornelius Fritz [aut, cre],
Michael Schweinberger [aut]
Maintainer: Cornelius Fritz <corneliusfritz2010@gmail.com>
Diff between iglm versions 1.1 dated 2025-11-28 and 1.2 dated 2026-03-15
iglm-1.1/iglm/R/count_statistics.R |only iglm-1.1/iglm/data/rice.rda |only iglm-1.1/iglm/data/state_twitter.rda |only iglm-1.1/iglm/man/count_statistics.Rd |only iglm-1.1/iglm/man/rice.Rd |only iglm-1.1/iglm/tests/testthat/Rplots.pdf |only iglm-1.2/iglm/DESCRIPTION | 13 iglm-1.2/iglm/MD5 | 104 iglm-1.2/iglm/NAMESPACE | 3 iglm-1.2/iglm/R/RcppExports.R | 20 iglm-1.2/iglm/R/data.R | 74 iglm-1.2/iglm/R/estimation.R | 1011 ++-- iglm-1.2/iglm/R/helper.R | 438 +- iglm-1.2/iglm/R/iglm.r | 2081 +++++----- iglm-1.2/iglm/R/iglm_data.r | 3090 ++++++++------- iglm-1.2/iglm/R/results.r | 2800 ++++++++----- iglm-1.2/iglm/R/sampler.r | 825 ++-- iglm-1.2/iglm/R/simulation.R | 380 + iglm-1.2/iglm/R/statistics.R |only iglm-1.2/iglm/R/zzz.R | 594 +- iglm-1.2/iglm/build/vignette.rds |binary iglm-1.2/iglm/data/copenhagen.R |only iglm-1.2/iglm/data/copenhagen.rda |only iglm-1.2/iglm/data/state_twitter.R |only iglm-1.2/iglm/inst/doc/iglm.R | 69 iglm-1.2/iglm/inst/doc/iglm.Rmd | 71 iglm-1.2/iglm/inst/doc/iglm.html | 96 iglm-1.2/iglm/inst/extdata |only iglm-1.2/iglm/inst/include/iglm/attribute_class.h | 23 iglm-1.2/iglm/inst/include/iglm/helper_functions.h | 140 iglm-1.2/iglm/inst/include/iglm/network_class.h | 217 - iglm-1.2/iglm/inst/include/iglm/xyz_class.h | 47 iglm-1.2/iglm/inst/include/iglm/xz_class.h | 402 + iglm-1.2/iglm/man/control.iglm.Rd | 26 iglm-1.2/iglm/man/copenhagen.Rd |only iglm-1.2/iglm/man/create_userterms_skeleton.Rd | 8 iglm-1.2/iglm/man/iglm.Rd | 113 iglm-1.2/iglm/man/iglm.data.Rd | 72 iglm-1.2/iglm/man/iglm.data_generator.Rd | 218 - iglm-1.2/iglm/man/iglm.object.generator.Rd | 179 iglm-1.2/iglm/man/model.terms.Rd | 505 +- iglm-1.2/iglm/man/results.Rd | 6 iglm-1.2/iglm/man/results.generator.Rd | 57 iglm-1.2/iglm/man/sampler.iglm.Rd | 20 iglm-1.2/iglm/man/sampler.net.attr.Rd | 6 iglm-1.2/iglm/man/sampler.net.attr.generator.Rd | 32 iglm-1.2/iglm/man/simulate_iglm.Rd | 27 iglm-1.2/iglm/man/state_twitter.Rd | 14 iglm-1.2/iglm/man/statistics.Rd |only iglm-1.2/iglm/src/RcppExports.cpp | 130 iglm-1.2/iglm/src/change_statistics.cpp | 2486 +++++++----- iglm-1.2/iglm/src/xyz_sampling.cpp | 2513 +++++------- iglm-1.2/iglm/tests/testthat/test-cpp_optimizations.R |only iglm-1.2/iglm/tests/testthat/test-iglm.R | 141 iglm-1.2/iglm/tests/testthat/test-iglm_data.R | 212 - iglm-1.2/iglm/tests/testthat/test-results.R | 78 iglm-1.2/iglm/tests/testthat/test-sampler.R | 16 iglm-1.2/iglm/tests/testthat/test-spillover_statistics.R |only iglm-1.2/iglm/tests/testthat/test-statistics.R | 471 +- iglm-1.2/iglm/vignettes/iglm.Rmd | 71 60 files changed, 11389 insertions(+), 8510 deletions(-)
Title: Low-Level R to Java Interface
Description: Low-level interface to Java VM very much like .C/.Call and friends. Allows creation of objects, calling methods and accessing fields.
Author: Simon Urbanek [aut, cre, cph]
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between rJava versions 1.0-15 dated 2026-03-11 and 1.0-16 dated 2026-03-15
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS | 6 ++++++ inst/jri/JRIEngine.jar |binary inst/jri/REngine.jar |binary src/jri/Rengine.java | 11 ++++++++++- src/jri/src/Rengine.c | 43 +++++++++++++++++++++++++++++++++++++------ src/rJava.h | 2 +- 8 files changed, 65 insertions(+), 19 deletions(-)
Title: Extracts Risk Neutral Densities of Prices, Money Market Rates
and Bond Yields from Fixed Income Options
Description: Provides with parametric risk neutral densities and cumulative densities for futures prices on fixed-income products. It relies on options on Short Term Interest Rate futures contracts prices or options on bond futures contracts prices. It models the price of the underlying asset as a mixture of either two or three lognormal densities. It also brings new functions which provide with risk neutral densities and cumulative densities of the money market rate or the bond yield inferred from the futures contract's price, using the density of the futures price. The package leverages on the works of Melick, W. R. and Thomas, C. P. (1997) <doi:10.2307/2331318> and B. Bahra (1998) <doi:10.2139/ssrn.77429>.
Author: William Arrata [aut, cre]
Maintainer: William Arrata <william.arrata@gmail.com>
Diff between yrnd versions 0.1.0 dated 2026-02-18 and 0.1.1 dated 2026-03-15
DESCRIPTION | 15 ++-- MD5 | 32 +++++----- NAMESPACE | 3 R/bond_future_charac_bbg.R |only R/bond_future_price.R | 73 ++++++++++++----------- R/ctd_bond_yield.R | 121 ++++++++++++++++++--------------------- R/globals.R | 8 +- R/stir_future_price.R | 124 ++++++++++++++++------------------------ R/stir_rate.R | 128 +++++++++++++++++------------------------- inst/doc/yrnd_functions.R | 2 inst/doc/yrnd_functions.Rmd | 7 -- inst/doc/yrnd_functions.html | 7 +- man/bond_future_charac_bbg.Rd |only man/bond_future_price.Rd | 39 ++++++++---- man/ctd_bond_yield.Rd | 48 ++++++++++----- man/stir_future_price.Rd | 91 ++++++++++++----------------- man/stir_rate.Rd | 94 +++++++++++++----------------- vignettes/yrnd_functions.Rmd | 7 -- 18 files changed, 371 insertions(+), 428 deletions(-)
Title: Deprecated 'classic' 'Rcpp' 'API'
Description: The 'RcppClassic' package provides a deprecated C++ library which
facilitates the integration of R and C++. New projects should use the new 'Rcpp'
'API' in the 'Rcpp' package.
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
David Reiss [ctb],
Dominick Samperi [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppClassic versions 0.9.13 dated 2022-11-21 and 0.9.14 dated 2026-03-15
RcppClassic-0.9.13/RcppClassic/inst/doc/RcppClassic-intro.Rnw |only RcppClassic-0.9.13/RcppClassic/inst/examples |only RcppClassic-0.9.13/RcppClassic/src/Makevars |only RcppClassic-0.9.13/RcppClassic/vignettes/RcppClassic-intro.Rnw |only RcppClassic-0.9.13/RcppClassic/vignettes/pdf |only RcppClassic-0.9.13/RcppClassic/vignettes/rmd |only RcppClassic-0.9.14/RcppClassic/ChangeLog | 63 ++ RcppClassic-0.9.14/RcppClassic/DESCRIPTION | 27 - RcppClassic-0.9.14/RcppClassic/MD5 | 41 - RcppClassic-0.9.14/RcppClassic/R/inline.R | 20 RcppClassic-0.9.14/RcppClassic/README.md | 4 RcppClassic-0.9.14/RcppClassic/build/vignette.rds |binary RcppClassic-0.9.14/RcppClassic/cleanup | 13 RcppClassic-0.9.14/RcppClassic/configure |only RcppClassic-0.9.14/RcppClassic/inst/doc/RcppClassic-intro.pdf |binary RcppClassic-0.9.14/RcppClassic/inst/doc/RcppClassic-intro.pdf.asis |only RcppClassic-0.9.14/RcppClassic/inst/include/classic/RcppFrame.h | 37 - RcppClassic-0.9.14/RcppClassic/src/Makevars.in |only RcppClassic-0.9.14/RcppClassic/src/Makevars.win | 10 RcppClassic-0.9.14/RcppClassic/src/RcppFrame.cpp | 261 ++++------ RcppClassic-0.9.14/RcppClassic/tests/tinytest.R | 2 RcppClassic-0.9.14/RcppClassic/tools |only RcppClassic-0.9.14/RcppClassic/vignettes/RcppClassic-intro.pdf.asis |only 23 files changed, 274 insertions(+), 204 deletions(-)
Title: Read and write PNG images
Description: This package provides an easy and simple way to read, write and display bitmap images stored in the PNG format. It can read and write both files and in-memory raw vectors.
Author: Simon Urbanek [aut, cre, cph]
Maintainer: Simon Urbanek <Simon.Urbanek@r-project.org>
Diff between png versions 0.1-8 dated 2022-11-29 and 0.1-9 dated 2026-03-15
png-0.1-8/png/configure.win |only png-0.1-9/png/DESCRIPTION | 13 ++++++++----- png-0.1-9/png/MD5 | 13 ++++++------- png-0.1-9/png/NEWS | 12 ++++++++++++ png-0.1-9/png/R/write.R | 4 +++- png-0.1-9/png/man/writePNG.Rd | 7 +++++-- png-0.1-9/png/src/Makevars.win | 10 ++++------ png-0.1-9/png/src/write.c | 2 +- 8 files changed, 39 insertions(+), 22 deletions(-)
Title: Tidy C++ Header-Only Definitions for Parts of the C API of R
Description: Core parts of the C API of R are wrapped in a C++ namespace via a set
of inline functions giving a tidier representation of the underlying data structures
and functionality using a header-only implementation without additional dependencies.
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between tidyCpp versions 0.0.9 dated 2026-03-04 and 0.0.10 dated 2026-03-15
tidyCpp-0.0.10/tidyCpp/ChangeLog | 24 +++++++++++++++++++ tidyCpp-0.0.10/tidyCpp/DESCRIPTION | 8 +++--- tidyCpp-0.0.10/tidyCpp/MD5 | 16 +++++------- tidyCpp-0.0.10/tidyCpp/build/partial.rdb |binary tidyCpp-0.0.10/tidyCpp/build/vignette.rds |binary tidyCpp-0.0.10/tidyCpp/inst/NEWS.Rd | 7 +++++ tidyCpp-0.0.10/tidyCpp/inst/include/tidy/defines.h | 9 +++++-- tidyCpp-0.0.10/tidyCpp/inst/include/tidy/internals.h | 18 +++++++------- tidyCpp-0.0.9/tidyCpp/vignettes/update_vignette.sh |only tidyCpp-0.0.9/tidyCpp/vignettes/water.css |only 10 files changed, 59 insertions(+), 23 deletions(-)
Title: 'Material UI' for 'shiny' Apps and 'Quarto'
Description: A set of user interface components for building 'shiny' applications and
'quarto' documents, including inputs, layouts, navigation, surfaces, and various
utilities. All components 'Material UI' from the company 'MUI' <https://mui.com/>
are available and all inputs have usage examples in R.
Author: Felix Luginbuhl [aut, cre, cph]
Maintainer: Felix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between muiMaterial versions 0.1.2 dated 2026-01-26 and 0.1.3 dated 2026-03-15
muiMaterial-0.1.2/muiMaterial/R/lab.R |only muiMaterial-0.1.3/muiMaterial/DESCRIPTION | 10 muiMaterial-0.1.3/muiMaterial/MD5 | 353 +++++----- muiMaterial-0.1.3/muiMaterial/NAMESPACE | 4 muiMaterial-0.1.3/muiMaterial/NEWS.md | 17 muiMaterial-0.1.3/muiMaterial/R/ThemeProvider.R | 16 muiMaterial-0.1.3/muiMaterial/R/browse.R |only muiMaterial-0.1.3/muiMaterial/R/components.R | 331 ++++----- muiMaterial-0.1.3/muiMaterial/R/inputs.R | 11 muiMaterial-0.1.3/muiMaterial/R/muiMaterialPage.R | 140 ++- muiMaterial-0.1.3/muiMaterial/R/triggerId.R |only muiMaterial-0.1.3/muiMaterial/README.md | 176 ++-- muiMaterial-0.1.3/muiMaterial/inst/examples/Checkbox.R | 61 + muiMaterial-0.1.3/muiMaterial/inst/examples/DrawerTriggerId.R |only muiMaterial-0.1.3/muiMaterial/inst/examples/Menu.R | 47 - muiMaterial-0.1.3/muiMaterial/inst/examples/Timeline.R |only muiMaterial-0.1.3/muiMaterial/inst/examples/dashboard-simple/app-static.R | 269 +++---- muiMaterial-0.1.3/muiMaterial/inst/examples/dashboard-simple/manifest.json |only muiMaterial-0.1.3/muiMaterial/inst/examples/mui-template-dashboard/app.R | 269 ++++--- muiMaterial-0.1.3/muiMaterial/inst/examples/mui-template-dashboard/manifest.json |only muiMaterial-0.1.3/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_AppNavbar.R | 144 +--- muiMaterial-0.1.3/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_Header.R | 2 muiMaterial-0.1.3/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_MenuContent.R | 29 muiMaterial-0.1.3/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_NavbarBreadcrumbs.R | 2 muiMaterial-0.1.3/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_OptionsMenu.R | 28 muiMaterial-0.1.3/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_SelectContent.R | 6 muiMaterial-0.1.3/muiMaterial/inst/examples/mui-template-dashboard/modules/mod_SideMenuMobile.R | 8 muiMaterial-0.1.3/muiMaterial/inst/examples/muiMaterialPage.R | 23 muiMaterial-0.1.3/muiMaterial/inst/examples/showcase/app.R | 4 muiMaterial-0.1.3/muiMaterial/inst/examples/showcase/manifest.json |only muiMaterial-0.1.3/muiMaterial/inst/www/muiMaterial/mui-material.js | 176 ++-- muiMaterial-0.1.3/muiMaterial/inst/www/muiMaterial/mui-material.js.LICENSE.txt | 16 muiMaterial-0.1.3/muiMaterial/man/Drawer.triggerId.Rd |only muiMaterial-0.1.3/muiMaterial/man/Menu.triggerId.Rd |only muiMaterial-0.1.3/muiMaterial/man/SwipeableDrawer.triggerId.Rd |only muiMaterial-0.1.3/muiMaterial/man/TabContext.Rd | 11 muiMaterial-0.1.3/muiMaterial/man/TabList.Rd | 13 muiMaterial-0.1.3/muiMaterial/man/TabPanel.Rd | 13 muiMaterial-0.1.3/muiMaterial/man/figures/mui-template-dashboard-screenshot.png |only muiMaterial-0.1.3/muiMaterial/man/muiMaterialPage.Rd | 30 muiMaterial-0.1.3/muiMaterial/man/print.muiMaterial.Rd |only muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Accordion.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-AccordionActions.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-AccordionDetails.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-AccordionSummary.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Alert.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-AlertTitle.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-AppBar.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Autocomplete.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Avatar.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-AvatarGroup.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Backdrop.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Badge.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-BottomNavigation.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-BottomNavigationAction.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Box.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Breadcrumbs.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Button.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-ButtonBase.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-ButtonGroup.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Card.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-CardActionArea.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-CardActions.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-CardContent.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-CardHeader.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-CardMedia.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Checkbox.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Chip.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-CircularProgress.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-ClickAwayListener.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Collapse.R 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muiMaterial-0.1.3/muiMaterial/tests/testthat/test-FormGroup.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-FormHelperText.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-FormLabel.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-GlobalStyles.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Grid.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-GridLegacy.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Grow.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Icon.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-IconButton.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-ImageList.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-ImageListItem.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-ImageListItemBar.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-Input.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-InputAdornment.R | 2 muiMaterial-0.1.3/muiMaterial/tests/testthat/test-InputBase.R | 2 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Title: Bayesian Treed Machine Learning for Personalized Prediction
Description: Generalization of the Bayesian classification and regression tree model that partitions subjects into terminal nodes and tailors predictive model to each terminal node.
Author: Yunro Chung [aut, cre] ,
Yaliang Zhang [aut]
Maintainer: Yunro Chung <yunro.chung@asu.edu>
Diff between btml versions 0.2.0 dated 2026-02-02 and 0.4.0 dated 2026-03-15
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- R/btml.R | 5 +++-- man/btml.Rd | 14 +++++++------- 4 files changed, 18 insertions(+), 17 deletions(-)
Title: Client for the 'World Bank' APIs
Description: Download and search data from the 'World Bank' APIs,
including the 'Indicators' API, the 'Poverty and Inequality Platform
(PIP)' API, the 'Finances One' API, and the 'Projects' API. See
<https://datahelpdesk.worldbank.org/knowledgebase/articles/889386-developer-information-overview>
for further details.
Author: Maximilian Muecke [aut, cre]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between worldbank versions 0.7.1 dated 2025-12-06 and 0.8.0 dated 2026-03-15
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Title: Sieve Maximum Full Likelihood Estimation for the Right-Censored
Proportional Hazards Model
Description: Fitting the full likelihood proportional hazards model and
extracting the residuals.
Author: Taehwa Choi [aut, cre],
Susan Halabi [aut],
Hyotae Kim [aut],
Yuan Wu [aut]
Maintainer: Taehwa Choi <taehwa015@gmail.com>
Diff between smlePH versions 0.1.0 dated 2024-05-17 and 0.1.1 dated 2026-03-15
DESCRIPTION | 25 ++++++++------ MD5 | 13 ++++--- NEWS.md |only R/smle_ph.R | 87 ++++++++++++++++++++++----------------------------- R/smle_resid.R | 17 +++++---- inst/doc/smlePH.html | 1 man/smle_ph.Rd | 10 ++--- man/smle_resid.Rd | 4 +- 8 files changed, 78 insertions(+), 79 deletions(-)
Title: R Wrapper to Access a Wide Range of Germany's Federal
Statistical System Databases Based on the GENESIS Web Service
RESTful API of the German Federal Statistical Office
(Statistisches Bundesamt/Destatis)
Description: A RESTful API wrapper for accessing the main databases of
Germany's Federal Statistical System. Supports data
search functions, credential management, result caching, and handling
remote background jobs for large datasets.
Author: Yannik Buhl [aut, cre],
Zoran Kovacevic [aut] ,
Dorian Le Jeune [aut],
Long Nguyen [aut] ,
Johannes Ritter [aut],
Stefan Linner [ctb]
Maintainer: Yannik Buhl <ybuhl@posteo.de>
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Title: Computation and Visualization of Package Download Counts and
Percentile Ranks
Description: Compute and visualize package download counts and percentile ranks
from Posit/RStudio's CRAN mirror.
Author: Peter Li [aut, cre]
Maintainer: Peter Li <lindbrook@gmail.com>
Diff between packageRank versions 0.9.7 dated 2025-10-14 and 0.9.8 dated 2026-03-15
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Title: Visualization Tool for Numerical Data on Human/Mouse Organs and
Organelles
Description: A tool for visualizing numerical data (e.g., gene expression, protein abundance) on predefined anatomical maps of human/mouse organs and subcellular organelles. It supports customization of color schemes, filtering by organ systems (for organisms) or organelle types, and generation of optional bar charts for quantitative comparison. The package integrates coordinate data for organs and organelles to plot anatomical/subcellular contours, mapping data values to specific structures for intuitive visualization of biological data distribution.The underlying method was described in the preprint by Zhou et al. (2022) <doi:10.1101/2022.09.07.506938>.
Author: Qirui Shen [aut, cre]
Maintainer: Qirui Shen <shenqr@i.smu.edu.cn>
Diff between OrgHeatmap versions 0.3.2 dated 2025-12-11 and 0.3.3 dated 2026-03-15
DESCRIPTION | 14 +- LICENSE | 4 MD5 | 30 ++-- NEWS.md | 16 ++ R/OrgHeatmap.R | 246 ++++++++++++++++----------------------- R/data.R | 81 +----------- README.md | 89 +++++++++----- data/human_organ_systems.rda |binary data/mouse_organ_systems.rda |binary inst/doc/introduction.R | 2 inst/doc/introduction.Rmd | 29 ++-- inst/doc/introduction.html | 42 ++++-- inst/extdata/exampledata.Rdata |binary man/OrgHeatmap.Rd | 5 tests/testthat/test-OrgHeatmap.R | 46 ++++++- vignettes/introduction.Rmd | 29 ++-- 16 files changed, 321 insertions(+), 312 deletions(-)
Title: Multi Precision Computing
Description: Provides new data-structure support for multi-precision computing for R users. The package supports 16-bit, 32-bit, and 64-bit operations. To the best of our knowledge, 'MPCR' differs from the currently available packages in the following: 'MPCR' introduces a new data structure that supports three different precisions (16-bit, 32-bit, and 64-bit), allowing for optimized memory allocation based on the desired precision. This feature offers significant advantages in memory optimization. 'MPCR' extends support to all basic linear algebra methods across different precisions. Optional GPU acceleration via CUDA is available for 32-bit and 64-bit operations when CUDA Toolkit is detected during installation, while 16-bit operations are GPU-only and limited to matrix-matrix multiplication. 'MPCR' maintains a consistent interface with normal R functions, allowing for seamless code integration and a user-friendly experience.
Author: David Helmy [aut, cph],
Sameh Abdulah [cre, cph],
KAUST King Abdullah University of Science and Technology [fnd, cph],
Brightskies [cph]
Maintainer: Sameh Abdulah <sameh.abdulah@kaust.edu.sa>
This is a re-admission after prior archival of version 1.1.4 dated 2025-04-13
Diff between MPCR versions 1.1.4 dated 2025-04-13 and 2.1.1 dated 2026-03-15
MPCR-1.1.4/MPCR/inst/doc/MCPR.Rnw |only MPCR-1.1.4/MPCR/inst/doc/MCPR.pdf |only MPCR-1.1.4/MPCR/inst/include/data-units/MPCRTile.hpp |only MPCR-1.1.4/MPCR/inst/include/data-units/Precision.hpp |only MPCR-1.1.4/MPCR/inst/include/data-units/Promoter.hpp |only MPCR-1.1.4/MPCR/inst/include/operations/TileLinearAlgebra.hpp |only MPCR-1.1.4/MPCR/inst/include/operations/helpers/LinearAlgebraHelper.hpp |only MPCR-1.1.4/MPCR/man/MPCRTile.Rd |only MPCR-1.1.4/MPCR/man/MPCRTileGemm.Rd |only MPCR-1.1.4/MPCR/man/MPCRTilePOTRF.Rd |only MPCR-1.1.4/MPCR/man/MPCRTileTRSM.Rd |only MPCR-1.1.4/MPCR/src/MPCRTileModule.cpp |only MPCR-1.1.4/MPCR/src/data-units/MPCRTile.cpp |only MPCR-1.1.4/MPCR/src/data-units/Promoter.cpp |only MPCR-1.1.4/MPCR/src/operations/TileLinearAlgebra.cpp |only MPCR-1.1.4/MPCR/tests/R-tests/SerializationExample.R |only MPCR-1.1.4/MPCR/tests/R-tests/TestMPCRTile.R |only MPCR-1.1.4/MPCR/tests/R-tests/TilePOTRFExample.R |only MPCR-1.1.4/MPCR/tests/cpp-tests |only MPCR-1.1.4/MPCR/vignettes/MCPR.Rnw |only MPCR-1.1.4/MPCR/vignettes/MPCR.pdf |only MPCR-2.1.1/MPCR/DESCRIPTION | 31 MPCR-2.1.1/MPCR/MD5 | 229 - MPCR-2.1.1/MPCR/R/MPCR.R | 52 MPCR-2.1.1/MPCR/build/vignette.rds |binary MPCR-2.1.1/MPCR/cleanup | 4 MPCR-2.1.1/MPCR/configure | 136 MPCR-2.1.1/MPCR/inst/CITATION |only MPCR-2.1.1/MPCR/inst/doc/MPCR.pdf |only MPCR-2.1.1/MPCR/inst/doc/MPCR.pdf.asis |only MPCR-2.1.1/MPCR/inst/include/adapters/RBasicUtilities.hpp | 42 MPCR-2.1.1/MPCR/inst/include/adapters/RContextManager.hpp |only MPCR-2.1.1/MPCR/inst/include/adapters/RHelpers.hpp | 86 MPCR-2.1.1/MPCR/inst/include/adapters/RLinearAlgebra.hpp | 62 MPCR-2.1.1/MPCR/inst/include/common |only MPCR-2.1.1/MPCR/inst/include/data-units/DataHolder.hpp |only MPCR-2.1.1/MPCR/inst/include/data-units/DataType.hpp | 331 +- MPCR-2.1.1/MPCR/inst/include/kernels |only MPCR-2.1.1/MPCR/inst/include/operations/LinearAlgebra.hpp | 44 MPCR-2.1.1/MPCR/inst/include/operations/concrete |only MPCR-2.1.1/MPCR/inst/include/operations/interface |only MPCR-2.1.1/MPCR/inst/include/utilities/FloatingPointHandler.hpp | 10 MPCR-2.1.1/MPCR/inst/include/utilities/MPCRDispatcher.hpp | 172 - MPCR-2.1.1/MPCR/inst/include/utilities/MPCRErrorHandler.hpp | 55 MPCR-2.1.1/MPCR/inst/include/utilities/MPCRPrinter.hpp |only MPCR-2.1.1/MPCR/inst/include/utilities/TypeChecker.hpp |only MPCR-2.1.1/MPCR/man/Arthimitics.Rd | 2 MPCR-2.1.1/MPCR/man/BackSolve.Rd | 7 MPCR-2.1.1/MPCR/man/BinaryComparisons.Rd | 2 MPCR-2.1.1/MPCR/man/Bind.Rd | 2 MPCR-2.1.1/MPCR/man/Brackets.Rd | 2 MPCR-2.1.1/MPCR/man/CheckPrecision.Rd | 2 MPCR-2.1.1/MPCR/man/Chol.Rd | 4 MPCR-2.1.1/MPCR/man/Chol2inv.Rd | 4 MPCR-2.1.1/MPCR/man/Concatenate.Rd | 2 MPCR-2.1.1/MPCR/man/Context.Rd |only MPCR-2.1.1/MPCR/man/Converters.Rd | 7 MPCR-2.1.1/MPCR/man/Crossprod.Rd | 4 MPCR-2.1.1/MPCR/man/DeepCopy.Rd | 17 MPCR-2.1.1/MPCR/man/Diagonal.Rd | 3 MPCR-2.1.1/MPCR/man/Dimensions.Rd | 2 MPCR-2.1.1/MPCR/man/Eigen.Rd | 11 MPCR-2.1.1/MPCR/man/Extremes.Rd | 2 MPCR-2.1.1/MPCR/man/HyperbolicFunctions.Rd | 2 MPCR-2.1.1/MPCR/man/IsSymetric.Rd | 7 MPCR-2.1.1/MPCR/man/LogFunctions.Rd | 2 MPCR-2.1.1/MPCR/man/MPCR.Rd | 28 MPCR-2.1.1/MPCR/man/MPCRGemm.Rd | 15 MPCR-2.1.1/MPCR/man/MPCRPrint.Rd | 2 MPCR-2.1.1/MPCR/man/MPCRTrsm.Rd | 18 MPCR-2.1.1/MPCR/man/Mathis.Rd | 2 MPCR-2.1.1/MPCR/man/Metadata.Rd | 2 MPCR-2.1.1/MPCR/man/Miscellaneous.Rd | 2 MPCR-2.1.1/MPCR/man/NAFunctions.Rd | 2 MPCR-2.1.1/MPCR/man/Norm.Rd | 6 MPCR-2.1.1/MPCR/man/QR.Rd | 11 MPCR-2.1.1/MPCR/man/Rcond.Rd | 6 MPCR-2.1.1/MPCR/man/Replicate.Rd | 3 MPCR-2.1.1/MPCR/man/Rounding.Rd | 2 MPCR-2.1.1/MPCR/man/SVD.Rd | 4 MPCR-2.1.1/MPCR/man/Scale.Rd | 2 MPCR-2.1.1/MPCR/man/Solve.Rd | 7 MPCR-2.1.1/MPCR/man/SpecialMath.Rd | 2 MPCR-2.1.1/MPCR/man/Sweep.Rd | 2 MPCR-2.1.1/MPCR/man/Transpose.Rd | 2 MPCR-2.1.1/MPCR/man/TrigFunctions.Rd | 2 MPCR-2.1.1/MPCR/src/CMakeLists.txt | 58 MPCR-2.1.1/MPCR/src/CMakeLists_inv.txt | 81 MPCR-2.1.1/MPCR/src/DataTypeModule.cpp | 271 + MPCR-2.1.1/MPCR/src/R/MPCR.R | 31 MPCR-2.1.1/MPCR/src/RcppExports.cpp | 2 MPCR-2.1.1/MPCR/src/adapters/CMakeLists.txt | 4 MPCR-2.1.1/MPCR/src/adapters/RBasicUtilities.cpp | 39 MPCR-2.1.1/MPCR/src/adapters/RBinaryOperations.cpp | 4 MPCR-2.1.1/MPCR/src/adapters/RContextManager.cpp |only MPCR-2.1.1/MPCR/src/adapters/RHelpers.cpp | 43 MPCR-2.1.1/MPCR/src/adapters/RLinearAlgebra.cpp | 101 MPCR-2.1.1/MPCR/src/cmake/ImportBlas.cmake | 2 MPCR-2.1.1/MPCR/src/cmake/ImportCuSolver.cmake |only MPCR-2.1.1/MPCR/src/cmake/ImportOpenMP.cmake | 4 MPCR-2.1.1/MPCR/src/cmake/toolchains/CudaToolchain.cmake |only MPCR-2.1.1/MPCR/src/cmake/toolchains/clang.cmake | 17 MPCR-2.1.1/MPCR/src/cmake/toolchains/gnu.cmake | 4 MPCR-2.1.1/MPCR/src/cmake/toolchains/intel.cmake | 7 MPCR-2.1.1/MPCR/src/data-units/CMakeLists.txt | 3 MPCR-2.1.1/MPCR/src/data-units/DataHolder.cpp |only MPCR-2.1.1/MPCR/src/data-units/DataType.cpp | 1374 +++++----- MPCR-2.1.1/MPCR/src/kernels |only MPCR-2.1.1/MPCR/src/operations/BasicOperations.cpp | 39 MPCR-2.1.1/MPCR/src/operations/BinaryOperations.cpp | 7 MPCR-2.1.1/MPCR/src/operations/CMakeLists.txt | 11 MPCR-2.1.1/MPCR/src/operations/LinearAlgebra.cpp | 1092 +++++-- MPCR-2.1.1/MPCR/src/operations/MathematicalOperations.cpp | 29 MPCR-2.1.1/MPCR/src/operations/concrete |only MPCR-2.1.1/MPCR/src/operations/cuda |only MPCR-2.1.1/MPCR/src/symbols.rds |binary MPCR-2.1.1/MPCR/tests/R-tests/TestCudaStreams.R |only MPCR-2.1.1/MPCR/tests/R-tests/TestMPCRClass.R | 42 MPCR-2.1.1/MPCR/tests/R-tests/TestMPCRGPU.R |only MPCR-2.1.1/MPCR/vignettes/MPCR.pdf.asis |only 120 files changed, 2759 insertions(+), 1964 deletions(-)
Title: Lagrangian Multiplier Smoothing Splines for Smooth Function
Estimation
Description: Implements Lagrangian multiplier smoothing splines for flexible
nonparametric regression and function estimation. Provides tools for fitting,
prediction, and inference using a constrained optimization approach to
enforce smoothness. Supports generalized linear models, Weibull accelerated
failure time (AFT) models, quadratic programming constraints, and
customizable working-correlation structures, with options for parallel
fitting. The core spline construction builds on Ezhov et al. (2018)
<doi:10.1515/jag-2017-0029>. Quadratic-programming and
SQP details follow Goldfarb & Idnani (1983) <doi:10.1007/BF02591962> and
Nocedal & Wright (2006) <doi:10.1007/978-0-387-40065-5>. For smoothing
spline and penalized spline background, see Wahba (1990)
<doi:10.1137/1.9781611970128> and Wood (2017)
<doi:10.1201/9781315370279>. For variance-component and correlation-parameter
estimation, see Searle et al. (2006) <ISBN:978-0470009598>. The default
multivaria [...truncated...]
Author: Matthew Davis [aut, cre]
Maintainer: Matthew Davis <matthewlouisdavis@gmail.com>
Diff between lgspline versions 0.3.0 dated 2025-11-18 and 1.0.1 dated 2026-03-15
lgspline-0.3.0/lgspline/man/weibull_shur_correction.Rd |only lgspline-1.0.1/lgspline/DESCRIPTION | 34 lgspline-1.0.1/lgspline/MD5 | 263 lgspline-1.0.1/lgspline/NAMESPACE | 42 lgspline-1.0.1/lgspline/NEWS.md | 4 lgspline-1.0.1/lgspline/R/HelperFunctions.R | 6923 +------ lgspline-1.0.1/lgspline/R/blockfit_solve.R |only lgspline-1.0.1/lgspline/R/cox_helpers.R |only lgspline-1.0.1/lgspline/R/get_B.R |only lgspline-1.0.1/lgspline/R/integrate.R |only lgspline-1.0.1/lgspline/R/leave_one_out.R | 184 lgspline-1.0.1/lgspline/R/lgspline-details.R | 2217 +- lgspline-1.0.1/lgspline/R/lgspline.R | 9436 ++++------ lgspline-1.0.1/lgspline/R/make_partitions.R |only lgspline-1.0.1/lgspline/R/methods.R | 4052 +++- lgspline-1.0.1/lgspline/R/negbin_helpers.R |only lgspline-1.0.1/lgspline/R/prior_loglik.R | 161 lgspline-1.0.1/lgspline/R/process_input.R |only lgspline-1.0.1/lgspline/R/process_qp.R |only lgspline-1.0.1/lgspline/R/solver_utils.R |only lgspline-1.0.1/lgspline/R/tune_Lambda.R |only lgspline-1.0.1/lgspline/R/weibull_helpers.R |only lgspline-1.0.1/lgspline/build/partial.rdb |binary lgspline-1.0.1/lgspline/inst/WORDLIST | 287 lgspline-1.0.1/lgspline/man/AGAmult_wrapper.Rd | 8 lgspline-1.0.1/lgspline/man/Details.Rd | 2235 +- lgspline-1.0.1/lgspline/man/GAmult_wrapper.Rd | 14 lgspline-1.0.1/lgspline/man/approx_grad.Rd | 16 lgspline-1.0.1/lgspline/man/blockfit_solve.Rd |only lgspline-1.0.1/lgspline/man/coef.lgspline.Rd | 40 lgspline-1.0.1/lgspline/man/coef.wald_lgspline.Rd |only lgspline-1.0.1/lgspline/man/collapse_block_diagonal.Rd | 10 lgspline-1.0.1/lgspline/man/compute_G_eigen.Rd | 67 lgspline-1.0.1/lgspline/man/compute_GhalfXy_temp_wrapper.Rd | 18 lgspline-1.0.1/lgspline/man/compute_Lambda.Rd | 18 lgspline-1.0.1/lgspline/man/compute_dG_dlambda.Rd | 11 lgspline-1.0.1/lgspline/man/compute_dG_u_dlambda_xy.Rd | 99 lgspline-1.0.1/lgspline/man/compute_dGhalf.Rd | 16 lgspline-1.0.1/lgspline/man/compute_dW_dlambda_wrapper.Rd | 9 lgspline-1.0.1/lgspline/man/compute_trace_H.Rd |only lgspline-1.0.1/lgspline/man/confint.lgspline.Rd |only lgspline-1.0.1/lgspline/man/confint.wald_lgspline.Rd |only lgspline-1.0.1/lgspline/man/cox_dispersion_function.Rd |only lgspline-1.0.1/lgspline/man/cox_family.Rd |only lgspline-1.0.1/lgspline/man/cox_glm_weight_function.Rd |only lgspline-1.0.1/lgspline/man/cox_helpers.Rd |only lgspline-1.0.1/lgspline/man/cox_qp_score_function.Rd |only lgspline-1.0.1/lgspline/man/cox_schur_correction.Rd |only lgspline-1.0.1/lgspline/man/create_block_diagonal.Rd | 2 lgspline-1.0.1/lgspline/man/create_onehot.Rd | 7 lgspline-1.0.1/lgspline/man/damped_newton_r.Rd | 10 lgspline-1.0.1/lgspline/man/dot-active_set_refine.Rd |only lgspline-1.0.1/lgspline/man/dot-bf_assemble_qp_info.Rd |only lgspline-1.0.1/lgspline/man/dot-bf_case_gauss_gee.Rd |only lgspline-1.0.1/lgspline/man/dot-bf_case_gauss_no_corr.Rd |only lgspline-1.0.1/lgspline/man/dot-bf_case_glm_gee.Rd |only 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lgspline-1.0.1/lgspline/man/invert.Rd | 17 lgspline-1.0.1/lgspline/man/is_binary.Rd | 2 lgspline-1.0.1/lgspline/man/knot_expand_list.Rd | 4 lgspline-1.0.1/lgspline/man/leave_one_out.Rd | 46 lgspline-1.0.1/lgspline/man/lgspline-methods.Rd | 10 lgspline-1.0.1/lgspline/man/lgspline-package.Rd | 3 lgspline-1.0.1/lgspline/man/lgspline.Rd | 1460 + lgspline-1.0.1/lgspline/man/lgspline.fit.Rd | 589 lgspline-1.0.1/lgspline/man/lgspline_cox.Rd |only lgspline-1.0.1/lgspline/man/lgspline_negbin.Rd |only lgspline-1.0.1/lgspline/man/lgspline_weibull.Rd |only lgspline-1.0.1/lgspline/man/logLik.lgspline.Rd |only lgspline-1.0.1/lgspline/man/loglik_cox.Rd |only lgspline-1.0.1/lgspline/man/loglik_negbin.Rd |only lgspline-1.0.1/lgspline/man/loglik_weibull.Rd | 12 lgspline-1.0.1/lgspline/man/make_constraint_matrix.Rd | 4 lgspline-1.0.1/lgspline/man/make_derivative_matrix.Rd | 7 lgspline-1.0.1/lgspline/man/make_partitions.Rd | 46 lgspline-1.0.1/lgspline/man/matinvsqrt.Rd | 30 lgspline-1.0.1/lgspline/man/matmult_block_diagonal.Rd | 1 lgspline-1.0.1/lgspline/man/matsqrt.Rd | 30 lgspline-1.0.1/lgspline/man/negbin_dispersion_function.Rd |only lgspline-1.0.1/lgspline/man/negbin_family.Rd |only lgspline-1.0.1/lgspline/man/negbin_glm_weight_function.Rd |only lgspline-1.0.1/lgspline/man/negbin_helpers.Rd |only lgspline-1.0.1/lgspline/man/negbin_qp_score_function.Rd |only lgspline-1.0.1/lgspline/man/negbin_schur_correction.Rd |only lgspline-1.0.1/lgspline/man/negbin_theta.Rd |only lgspline-1.0.1/lgspline/man/nr_iterate.Rd | 13 lgspline-1.0.1/lgspline/man/plot.lgspline.Rd | 186 lgspline-1.0.1/lgspline/man/plot.wald_lgspline.Rd |only lgspline-1.0.1/lgspline/man/predict.lgspline.Rd | 153 lgspline-1.0.1/lgspline/man/print.lgspline.Rd | 12 lgspline-1.0.1/lgspline/man/print.summary.lgspline.Rd | 17 lgspline-1.0.1/lgspline/man/print.wald_lgspline.Rd |only lgspline-1.0.1/lgspline/man/prior_loglik.Rd | 39 lgspline-1.0.1/lgspline/man/process_input.Rd |only lgspline-1.0.1/lgspline/man/process_qp.Rd |only lgspline-1.0.1/lgspline/man/reml_grad_from_dV.Rd |only lgspline-1.0.1/lgspline/man/safe_replace_var.Rd |only lgspline-1.0.1/lgspline/man/score_cox.Rd |only lgspline-1.0.1/lgspline/man/score_negbin.Rd |only lgspline-1.0.1/lgspline/man/softplus.Rd | 2 lgspline-1.0.1/lgspline/man/std.Rd | 3 lgspline-1.0.1/lgspline/man/summary.lgspline.Rd | 33 lgspline-1.0.1/lgspline/man/summary.wald_lgspline.Rd |only lgspline-1.0.1/lgspline/man/tune_Lambda.Rd | 278 lgspline-1.0.1/lgspline/man/unconstrained_fit_cox.Rd |only lgspline-1.0.1/lgspline/man/unconstrained_fit_default.Rd | 36 lgspline-1.0.1/lgspline/man/unconstrained_fit_negbin.Rd |only lgspline-1.0.1/lgspline/man/unconstrained_fit_weibull.Rd | 23 lgspline-1.0.1/lgspline/man/wald_univariate.Rd | 88 lgspline-1.0.1/lgspline/man/weibull_dispersion_function.Rd | 30 lgspline-1.0.1/lgspline/man/weibull_family.Rd | 28 lgspline-1.0.1/lgspline/man/weibull_glm_weight_function.Rd | 36 lgspline-1.0.1/lgspline/man/weibull_qp_score_function.Rd | 25 lgspline-1.0.1/lgspline/man/weibull_scale.Rd | 14 lgspline-1.0.1/lgspline/man/weibull_schur_correction.Rd |only lgspline-1.0.1/lgspline/src/cpp_functions.cpp | 19 lgspline-1.0.1/lgspline/tests/testthat/test-advanced.R | 47 lgspline-1.0.1/lgspline/tests/testthat/test-cox.R |only lgspline-1.0.1/lgspline/tests/testthat/test-methods.R | 34 lgspline-1.0.1/lgspline/tests/testthat/test-negbin.R |only lgspline-1.0.1/lgspline/tests/testthat/test-utilities.R |only lgspline-1.0.1/lgspline/tests/testthat/test_correlation_structure.R | 123 188 files changed, 16999 insertions(+), 13557 deletions(-)
Title: Easily Apply Formats to Data
Description: Contains a set of functions that can be used to apply
formats to data frames or vectors. The package aims to provide
functionality similar to that of SAS® formats. Formats are assigned to
the format attribute on data frame columns. Then when the fdata()
function is called, a new data frame is created with the column data
formatted as specified. The package also contains a value() function
to create a user-defined format, similar to a SAS® user-defined format.
Author: David Bosak [aut, cre],
Chen Ling [aut]
Maintainer: David Bosak <dbosak01@gmail.com>
Diff between fmtr versions 1.7.2 dated 2026-01-25 and 1.7.3 dated 2026-03-15
DESCRIPTION | 6 - MD5 | 26 +++--- NEWS.md | 5 + R/datetimewd.R |only R/fapply.R | 154 +++++++++++++++++++++++++++++++++++---- R/fmtr.R | 40 ++++++++-- inst/doc/fmtr-convenience.html | 4 - inst/doc/fmtr-fapply.html | 4 - inst/doc/fmtr-fapply2.html | 4 - inst/doc/fmtr-fcat.html | 4 - inst/doc/fmtr-fdata.html | 4 - inst/doc/fmtr-helpers.html | 4 - man/FormattingStrings.Rd | 42 ++++++++-- man/fapply.Rd | 95 +++++++++++++++++++++++- tests/testthat/test-datetimewd.R |only 15 files changed, 335 insertions(+), 57 deletions(-)
Title: An Interactive Editor for Viewing, Entering, Filtering & Editing
Data
Description: An interactive editor built on 'rhandsontable' to allow the
interactive viewing, entering, filtering and editing of data in R
<https://dillonhammill.github.io/DataEditR/>.
Author: Dillon Hammill [aut, cre]
Maintainer: Dillon Hammill <dillon.hammill21@gmail.com>
Diff between DataEditR versions 0.1.5 dated 2022-03-08 and 1.0.0 dated 2026-03-15
DESCRIPTION | 19 MD5 | 52 +- NAMESPACE | 4 NEWS.md | 62 ++ R/dataCode.R |only R/dataEdit.R | 238 ++++++++++ R/dataFilter.R | 15 R/dataInput.R | 2 R/dataOutput.R | 2 R/dataSelect.R | 7 R/dataSync.R | 64 ++ R/data_edit.R | 195 +++++--- R/helpers.R | 10 R/shiny.R | 7 README.md | 106 ++-- build/vignette.rds |binary inst/doc/DataEditR.R | 420 ++++++++++-------- inst/doc/DataEditR.Rmd | 133 +++++ inst/doc/DataEditR.html | 1110 +++++++++++++++++++++++++++--------------------- man/dataEdit.Rd | 13 man/dataFilter.Rd | 2 man/dataInput.Rd | 2 man/dataOutput.Rd | 2 man/dataSelect.Rd | 2 man/dataSync.Rd | 14 man/data_code.Rd |only man/data_edit.Rd | 29 - vignettes/DataEditR.Rmd | 133 +++++ 28 files changed, 1773 insertions(+), 870 deletions(-)
Title: Crosstables for Descriptive Analyses
Description: Create descriptive tables for continuous and categorical variables.
Apply summary statistics and counting function, with or without a grouping variable, and create beautiful reports using 'rmarkdown' or 'officer'.
You can also compute effect sizes and statistical tests if needed.
Author: Dan Chaltiel [aut, cre] ,
David Hajage [ccp]
Maintainer: Dan Chaltiel <dan.chaltiel@gmail.com>
Diff between crosstable versions 0.8.2 dated 2025-09-07 and 0.9.0 dated 2026-03-15
DESCRIPTION | 8 MD5 | 113 ++++++----- NAMESPACE | 21 +- NEWS.md | 31 +++ R/cbind.R |only R/compact.R | 135 ++++++------- R/cross_by.R | 4 R/cross_categorical.R | 5 R/cross_numeric.R | 2 R/cross_survival.R | 3 R/crosstable-package.R | 2 R/crosstable.R | 4 R/effect.R | 23 +- R/flextable.R | 104 +++++----- R/funs.R | 194 +++++++++++++------ R/labels.R | 35 +-- R/officer.R | 90 ++++++++- R/options.R | 25 +- R/test.R | 77 +++---- R/utils.R | 37 ++- README.md | 4 build/vignette.rds |binary inst/IMPORTLIST | 1 inst/autoimport_cache.rds |only inst/doc/crosstable-report.html | 4 inst/doc/crosstable-selection.html | 30 +-- inst/doc/crosstable.R | 13 - inst/doc/crosstable.Rmd | 13 - inst/doc/crosstable.html | 59 +++-- inst/doc/customization.R |only inst/doc/customization.Rmd |only inst/doc/customization.html |only inst/doc/percent_pattern.html | 10 - inst/figures |only inst/hex.R |only man/as_flextable.Rd | 35 ++- man/body_add_flextable2.Rd |only man/body_add_gg2.Rd | 9 man/crosstable.Rd | 4 man/crosstable_options.Rd | 21 +- man/ct_bind_cols.Rd |only man/ct_compact.Rd | 17 + man/format_fixed.Rd | 92 +++++---- man/rename_with_labels.Rd | 17 - man/summaryFunctions.Rd | 4 man/write_and_open.Rd | 6 tests/testthat/_snaps/by_factor.md | 338 +++++++++++++++++----------------- tests/testthat/_snaps/by_numeric.md | 88 -------- tests/testthat/_snaps/cbind.md |only tests/testthat/_snaps/compact.md | 233 +++++++++++++---------- tests/testthat/_snaps/effects_snap.md | 208 ++++++++++---------- tests/testthat/_snaps/format.md |only tests/testthat/_snaps/labels.md | 9 tests/testthat/_snaps/options.md | 127 ++++++------ tests/testthat/helper-zzz.R |only tests/testthat/test-by_numeric.R | 59 ----- tests/testthat/test-cbind.R |only tests/testthat/test-compact.R | 46 ++-- tests/testthat/test-format.R |only tests/testthat/test-labels.R | 10 - tests/testthat/test-officer.R | 12 - tests/testthat/test-options.R | 8 tests/testthat/todo_tests.R | 244 ++++++++++++------------ vignettes/crosstable.Rmd | 13 - vignettes/customization.Rmd |only 65 files changed, 1416 insertions(+), 1231 deletions(-)
Title: Statistical Modeling of Compound Events
Description: Tools for extracting occurrences, assessing potential driving factors, predicting occurrences, and quantifying impacts of compound events in hydrology and climatology. Please see Hao Zengchao et al. (2022) <doi:10.1016/j.earscirev.2022.104241>.
Author: Zengchao Hao [aut, cre]
Maintainer: Zengchao Hao <z.hao4univ@gmail.com>
Diff between CompoundEvents versions 0.3.0 dated 2024-02-03 and 1.0 dated 2026-03-15
CompoundEvents-0.3.0/CompoundEvents/R/DriverLGR.R |only CompoundEvents-0.3.0/CompoundEvents/R/GetDC.R |only CompoundEvents-0.3.0/CompoundEvents/R/ImpactMG.R |only CompoundEvents-0.3.0/CompoundEvents/R/PredLGR.R |only CompoundEvents-0.3.0/CompoundEvents/R/SCEI.R |only CompoundEvents-0.3.0/CompoundEvents/man/DriverLGR.Rd |only CompoundEvents-0.3.0/CompoundEvents/man/GetDC.Rd |only CompoundEvents-0.3.0/CompoundEvents/man/ImpactMG.Rd |only CompoundEvents-0.3.0/CompoundEvents/man/PredLGR.Rd |only CompoundEvents-0.3.0/CompoundEvents/man/SCEI.Rd |only CompoundEvents-1.0/CompoundEvents/DESCRIPTION | 27 +++-- CompoundEvents-1.0/CompoundEvents/MD5 | 49 +++++----- CompoundEvents-1.0/CompoundEvents/NAMESPACE | 28 +++-- CompoundEvents-1.0/CompoundEvents/R/ACCU.R |only CompoundEvents-1.0/CompoundEvents/R/ChangeDH.R |only CompoundEvents-1.0/CompoundEvents/R/ChangeWH.R |only CompoundEvents-1.0/CompoundEvents/R/DriverLogit.R |only CompoundEvents-1.0/CompoundEvents/R/Empdis1.R | 18 ++- CompoundEvents-1.0/CompoundEvents/R/Empdis2.R | 24 ++-- CompoundEvents-1.0/CompoundEvents/R/GetDH.R | 26 ++--- CompoundEvents-1.0/CompoundEvents/R/ImpactMGDH.R |only CompoundEvents-1.0/CompoundEvents/R/LMFDH.R | 6 - CompoundEvents-1.0/CompoundEvents/R/PredLogit.R |only CompoundEvents-1.0/CompoundEvents/R/SCEIDH.R |only CompoundEvents-1.0/CompoundEvents/R/dfptng.R |only CompoundEvents-1.0/CompoundEvents/data |only CompoundEvents-1.0/CompoundEvents/man/ACCU.Rd |only CompoundEvents-1.0/CompoundEvents/man/ChangeDH.Rd |only CompoundEvents-1.0/CompoundEvents/man/ChangeWH.Rd |only CompoundEvents-1.0/CompoundEvents/man/CompoundEvents-package.Rd | 12 ++ CompoundEvents-1.0/CompoundEvents/man/DriverLogit.Rd |only CompoundEvents-1.0/CompoundEvents/man/Empdis1.Rd | 8 + CompoundEvents-1.0/CompoundEvents/man/Empdis2.Rd | 10 +- CompoundEvents-1.0/CompoundEvents/man/GetDH.Rd | 19 ++- CompoundEvents-1.0/CompoundEvents/man/ImpactMGDH.Rd |only CompoundEvents-1.0/CompoundEvents/man/PredLogit.Rd |only CompoundEvents-1.0/CompoundEvents/man/SCEIDH.Rd |only CompoundEvents-1.0/CompoundEvents/man/dfptng.Rd |only CompoundEvents-1.0/CompoundEvents/tests |only 39 files changed, 133 insertions(+), 94 deletions(-)
More information about CompoundEvents at CRAN
Permanent link
Title: Cobin and Micobin Regression Models for Continuous Proportional
Data
Description: Provides functions for cobin and micobin regression models, a new family of generalized linear models for continuous proportional data (Y in the closed unit interval [0, 1]). It also includes an exact, efficient sampler for the Kolmogorov-Gamma random variable. For details, see Lee et al. (2026) <doi:10.1080/01621459.2026.2626081>.
Author: Changwoo Lee [aut, cre],
Benjamin Dahl [aut],
Otso Ovaskainen [aut],
David Dunson [aut]
Maintainer: Changwoo Lee <c.lee.stat@gmail.com>
Diff between cobin versions 1.0.1.3 dated 2025-09-01 and 1.0.1.4 dated 2026-03-15
DESCRIPTION | 18 +++++++++--------- MD5 | 16 ++++++++-------- R/cobinreg.R | 2 +- R/micobinreg.R | 2 +- R/misc.R | 53 +++++++++++++++++++++++++++++++++++++++++++++++++---- R/spcobinreg.R | 2 +- R/spmicobinreg.R | 2 +- R/varfunctions.R | 3 +-- README.md | 20 +++++++++++++------- 9 files changed, 84 insertions(+), 34 deletions(-)
Title: Explore Classification Models in High Dimensions
Description: Given $p$-dimensional training data containing $d$ groups
(the design space), a classification algorithm (classifier) predicts
which group new data belongs to. Generally the input to these
algorithms is high dimensional, and the boundaries between groups will
be high dimensional and perhaps non-linear. This
package implements methods for understanding the division of space
between the groups.
Author: Hadley Wickham [aut],
Dianne Cook [cre]
Maintainer: Dianne Cook <visnut@gmail.com>
This is a re-admission after prior archival of version 0.4.1 dated 2022-05-20
Diff between classifly versions 0.4.1 dated 2022-05-20 and 0.4.3 dated 2026-03-15
DESCRIPTION | 23 ++++++++++++++------- MD5 | 16 +++++++------- NEWS.md | 9 ++++++++ R/classification.r | 39 ++++++++++++++++++++++-------------- man/classifly.Rd | 8 +++---- man/explore.Rd | 6 ++--- man/generate_classification_data.Rd | 6 ++--- man/olives.Rd | 6 ++--- man/simvar.Rd | 8 +++---- 9 files changed, 74 insertions(+), 47 deletions(-)
Title: Data Analysis Using Regression and Multilevel/Hierarchical
Models
Description: Functions to accompany A. Gelman and J. Hill, Data Analysis Using Regression and Multilevel/Hierarchical Models, Cambridge University Press, 2007.
Author: Andrew Gelman [aut],
Yu-Sung Su [aut, cre] ,
Masanao Yajima [ctb],
Jennifer Hill [ctb],
Maria Grazia Pittau [ctb],
Jouni Kerman [ctb],
Tian Zheng [ctb],
Vincent Dorie [ctb]
Maintainer: Yu-Sung Su <suyusung@tsinghua.edu.cn>
Diff between arm versions 1.14-4 dated 2024-04-01 and 1.15-1 dated 2026-03-15
CHANGELOG | 6 + DESCRIPTION | 14 +-- MD5 | 24 +++--- NAMESPACE | 5 - R/coef.R | 3 R/rescale.R | 67 +++++++++++------- R/sim.R | 167 +++++++++++++++++++++++++++++++++++++++++----- R/standardize.R | 168 ++++++++++++++++++++++++----------------------- man/bayesglm.Rd | 2 man/lalonde.Rd | 4 - man/model.matrixBayes.Rd | 2 man/rescale.Rd | 9 ++ man/standardize.Rd | 2 13 files changed, 320 insertions(+), 153 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-11-25 0.2.4
2020-10-26 0.2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-13 1.9.8.3
2026-02-13 1.9.8.2
2026-02-12 1.9.7.1
2024-09-19 1.9.7
2024-02-02 1.9.5.1
2023-12-11 1.9.5
2023-01-20 1.9.3
2022-11-28 1.9.2
2022-06-03 1.8.9
2021-09-02 1.8.7
2020-10-14 1.8.6
2020-08-28 1.8.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-28 2.1-2
2022-12-14 2.1-0
2022-11-15 2.0-18
2022-10-04 2.0-17
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-03-26 1.3.3
2022-04-28 1.3.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-11-17 3.0.3
2021-02-11 2.3.6
2020-10-08 2.3.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-16 1.0.1
Title: Location Scale Standardized Distributions
Description: Location-Scale based distributions parameterized in terms of mean, standard deviation, skew and shape parameters and estimation using automatic differentiation. Distributions include the Normal, Student and GED as well as their skewed variants ('Fernandez and Steel'), the 'Johnson SU', and the Generalized Hyperbolic. Also included is the semi-parametric piece wise distribution ('spd') with Pareto tails and kernel interior.
Author: Alexios Galanos [aut, cre, cph]
Maintainer: Alexios Galanos <alexios@4dscape.com>
Diff between tsdistributions versions 1.0.3 dated 2025-04-17 and 1.0.4 dated 2026-03-15
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS.md | 5 +++++ build/partial.rdb |binary inst/doc/estimation_demo.html | 9 +++++---- inst/doc/location_scale_distributions.pdf |binary inst/doc/profile_demo.html | 9 +++++---- inst/doc/spd_demo.html | 9 +++++---- src/TMB/tsdistributions_TMBExports.cpp | 2 +- 9 files changed, 34 insertions(+), 26 deletions(-)
More information about tsdistributions at CRAN
Permanent link
Title: Univariate GARCH Models
Description: ARFIMA, in-mean, external regressors and various GARCH flavors, with methods for fit, forecast, simulation, inference and plotting.
Author: Alexios Galanos [aut, cre, cph] ,
Tobias Kley [ctb]
Maintainer: Alexios Galanos <alexios@4dscape.com>
Diff between rugarch versions 1.5-4 dated 2025-06-21 and 1.5-5 dated 2026-03-15
ChangeLog | 4 ++++ DESCRIPTION | 10 +++++----- MD5 | 14 +++++++------- README.md | 4 ---- inst/doc/Introduction_to_the_rugarch_package.pdf |binary src/garchsim.cpp | 14 +++++++------- vignettes/rugarch.tex | 13 ++----------- vignettes/rugarchbib.bib | 3 +-- 8 files changed, 26 insertions(+), 36 deletions(-)
Title: Photobiological Calculations
Description: Definitions of classes, methods, operators and functions for use
in photobiology and radiation meteorology and climatology. Calculation of
effective (weighted) and not-weighted irradiances/doses, fluence rates,
transmittance, reflectance, absorptance, absorbance and diverse ratios and
other derived quantities from spectral data. Local maxima and minima: peaks,
valleys and spikes. Conversion between energy-and photon-based units.
Wavelength interpolation. Colours and vision. This package is part of the
'r4photobiology' suite, Aphalo, P. J. (2015) <doi:10.19232/uv4pb.2015.1.14>.
Author: Pedro J. Aphalo [aut, cre] ,
Titta K. Kotilainen [ctb] ,
Glenn Davis [ctb],
Agnese Fazio [ctb]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between photobiology versions 0.14.1 dated 2026-01-10 and 0.14.2 dated 2026-03-15
DESCRIPTION | 8 MD5 | 189 ++--- NAMESPACE | 10 NEWS.md | 18 R/color.of.R | 5 R/copy.attr.R | 3 R/filter-spct-ratios-fractions.r | 6 R/mspct.methods.R | 11 R/rbindspct.r | 50 + R/reflector-spct-ratios-fractions.r | 16 R/simul-response.R |only R/source-spct-fractions.R | 4 R/source-spct-ratios.R | 8 R/spct-conversion-qty-unit.R | 112 --- R/spct.absorbance.R | 4 R/spct.absorptance.R | 10 R/spct.classes.r | 207 ++++++ R/spct.illuminance.r | 2 R/spct.irrad.r | 12 R/spct.normalize.r | 945 ++++++++++++++++++----------- R/spct.reflectance.r | 4 R/spct.response.R | 6 R/spct.summaries.r | 182 +++-- R/spct.transmittance.r | 4 R/trim.waveband.r | 2 R/zmspct.classes.R | 18 README.md | 4 build/partial.rdb |binary build/vignette.rds |binary data/A.illuminant.spct.rda |binary data/D2-FEL-constants.rda |binary data/D50.illuminant.spct.rda |binary data/D65.illuminant.spct.rda |binary data/Ler-leaf-spct.rda |binary data/beesxyz.spct.rda |binary data/black_body.spct.rda |binary data/ciev10.spct.rda |binary data/ciev2.spct.rda |binary data/ciexyzCC10.spct.rda |binary data/ciexyzCC2.spct.rda |binary data/ciexyzCMF10.spct.rda |binary data/ciexyzCMF2.spct.rda |binary data/clear_body.spct.rda |binary data/cone_fundamentals10.spct.rda |binary data/filter-cps-mspct.rda |binary data/filter-data.rda |binary data/green_leaf.spct.rda |binary data/r4p-pkgs.rda |binary data/response-data.rda |binary data/solutes.rda |binary data/sun.data.rda |binary data/white-led-spct.rda |binary data/white_body.spct.rda |binary inst/doc/userguide-0-r4p-introduction.html | 2 inst/doc/userguide-1-radiation.R | 9 inst/doc/userguide-1-radiation.Rmd | 29 inst/doc/userguide-1-radiation.html | 470 +++++++------- man/Rfr_fraction.Rd | 2 man/Rfr_normdiff.Rd | 4 man/add_attr2tb.Rd | 2 man/denormalize_spct.Rd | 11 man/e2q.Rd | 6 man/getFilterProperties.Rd | 4 man/getHowMeasured.Rd | 2 man/getInstrDesc.Rd | 2 man/getInstrSettings.Rd | 2 man/getNormalized.Rd | 84 +- man/getSensorProperties.Rd |only man/getSoluteProperties.Rd | 4 man/getWhatMeasured.Rd | 2 man/getWhenMeasured.Rd | 2 man/getWhereMeasured.Rd | 2 man/get_attributes.Rd | 2 man/isValidInstrDesc.Rd | 2 man/isValidInstrSettings.Rd | 2 man/is_normalized.Rd | 16 man/normalize.Rd | 121 ++- man/print.generic_spct.Rd | 2 man/print.metadata.Rd | 3 man/restore_normalization.Rd |only man/select_spct_attributes.Rd | 2 man/setFilterProperties.Rd | 2 man/setHowMeasured.Rd | 2 man/setInstrDesc.Rd | 2 man/setInstrSettings.Rd | 2 man/setNormalized.Rd | 84 ++ man/setSensorProperties.Rd |only man/setSoluteProperties.Rd | 2 man/setWhatMeasured.Rd | 2 man/setWhenMeasured.Rd | 2 man/setWhereMeasured.Rd | 2 man/simul_sensor_response.Rd |only man/spct_attr2tb.Rd | 2 man/spct_metadata.Rd | 2 man/subset_attributes.Rd | 2 man/trimInstrDesc.Rd | 2 man/trimInstrSettings.Rd | 2 vignettes/userguide-1-radiation.Rmd | 29 98 files changed, 1740 insertions(+), 1028 deletions(-)
Title: Streamline Physical Activity Research
Description: Functions that support a broad range of common tasks in physical
activity research, including but not limited to creation of Bland-Altman
plots (<doi:10.1136/bmj.313.7049.106>), metabolic calculations such as basal
metabolic rate predictions (<https://europepmc.org/article/med/4044297/reloa>),
demographic calculations such as age-for-body-mass-index percentile
(<https://www.cdc.gov/growthcharts/cdc_charts.htm>), and analysis of bout
detection algorithm performance (<https://pubmed.ncbi.nlm.nih.gov/34258524/>).
Author: Paul R. Hibbing [aut, cre],
Centers for Disease Control and Prevention [ctb]
Maintainer: Paul R. Hibbing <paulhibbing@gmail.com>
Diff between PAutilities versions 1.2.1 dated 2025-06-11 and 1.3.0 dated 2026-03-15
DESCRIPTION | 10 +++++----- MD5 | 26 ++++++++++++++------------ NAMESPACE | 1 + NEWS.md | 11 +++++++++++ R/PAutilities.R | 3 +-- R/ba_analysis.R | 2 +- R/ba_plot.R | 8 ++++---- R/plot_shaded_unshaded.R | 4 ++-- R/reintegrate.R |only R/zzz.R | 2 +- build/partial.rdb |binary build/vignette.rds |binary inst/doc/tpm.html | 11 ++++------- man/PAutilities.Rd | 18 ++++++++++++++++++ man/reintegrate.Rd |only 15 files changed, 62 insertions(+), 34 deletions(-)
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles, random deviates,
and densities. Log-likelihoods for multivariate Gaussian models and Gaussian copulae
parameterised by Cholesky factors of covariance or precision matrices are implemented
for interval-censored and exact data, or a mix thereof. Score functions for these
log-likelihoods are available. A class representing multiple lower triangular matrices
and corresponding methods are part of this package.
Author: Alan Genz [aut],
Frank Bretz [aut],
Tetsuhisa Miwa [aut],
Xuefei Mi [aut],
Friedrich Leisch [ctb],
Fabian Scheipl [ctb],
Bjoern Bornkamp [ctb] ,
Martin Maechler [ctb] ,
Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mvtnorm versions 1.3-5 dated 2026-03-11 and 1.3-6 dated 2026-03-15
DESCRIPTION | 8 - MD5 | 36 ++--- R/interface.R | 8 + R/lpmvnorm.R | 9 - build/partial.rdb |binary inst/NEWS.Rd | 17 ++ inst/REFERENCES.bib | 3 inst/doc/MVT_Rnews.pdf |binary inst/doc/lmvnorm_src.R | 68 ++++++--- inst/doc/lmvnorm_src.Rnw | 277 ++++++++++++++++++++++++---------------- inst/doc/lmvnorm_src.pdf |binary tests/bugfix-tests.Rout.save | 8 - tests/plmvnorm-Ex.Rout.save | 8 - tests/regtest-TVPACK.Rout.save | 6 tests/regtest-scores.Rout.save | 8 - tests/slpmvnorm.R | 4 tests/test-noisy-root.Rout.save | 8 - vignettes/lmvnorm_src.Rnw | 277 ++++++++++++++++++++++++---------------- vignettes/lmvnorm_src.Rout.save | 66 +++++---- 19 files changed, 495 insertions(+), 316 deletions(-)
Title: Bayesian Longitudinal Regularized Quantile Mixed Model
Description: With high-dimensional omics features, repeated measure ANOVA leads to longitudinal gene-environment interaction studies that have intra-cluster correlations, outlying observations and structured sparsity arising from the ANOVA design. In this package, we have developed robust sparse Bayesian mixed effect models tailored for the above studies (Fan et al. (2025) <doi:10.1093/jrsssc/qlaf027>). An efficient Gibbs sampler has been developed to facilitate fast computation. The Markov chain Monte Carlo algorithms of the proposed and alternative methods are efficiently implemented in 'C++'. The development of this software package and the associated statistical methods have been partially supported by an Innovative Research Award from Johnson Cancer Research Center, Kansas State University.
Author: Kun Fan [aut, cre],
Shejuty Devnath [aut],
Cen Wu [aut]
Maintainer: Kun Fan <kfan@ksu.edu>
Diff between mixedBayes versions 0.2.1 dated 2026-02-28 and 0.2.2 dated 2026-03-15
DESCRIPTION | 8 ++-- MD5 | 22 +++++------ NEWS.md | 4 ++ R/LONBGLSS.R | 76 +++++++++++++++++++++++++++++++++------- R/LONBGLSS_1.R | 86 ++++++++++++++++++++++++++++++++++++++-------- R/LONRBGLSS.R | 71 ++++++++++++++++++++++++++++++------- R/LONRBGLSS_1.R | 70 +++++++++++++++++++++++++++++-------- R/mixedBayes.R | 4 +- R/predict_mixedBayes.R | 4 ++ build/partial.rdb |binary data/data.rda |binary man/predict_mixedBayes.Rd | 1 12 files changed, 274 insertions(+), 72 deletions(-)
Title: Download and Process Public Domain Works from Project Gutenberg
Description: Download and process public domain works in the Project
Gutenberg collection <https://www.gutenberg.org/>. Includes metadata
for all Project Gutenberg works, so that they can be searched and
retrieved.
Author: Jordan Bradford [aut, cre] ,
Jon Harmon [aut] ,
Myfanwy Johnston [aut],
David Robinson [aut, cph]
Maintainer: Jordan Bradford <jrdnbradford@gmail.com>
Diff between gutenbergr versions 0.4.1 dated 2026-01-19 and 0.5.0 dated 2026-03-15
gutenbergr-0.4.1/gutenbergr/inst/doc/gutenbergr.R |only gutenbergr-0.4.1/gutenbergr/inst/doc/gutenbergr.Rmd |only gutenbergr-0.4.1/gutenbergr/inst/doc/gutenbergr.html |only gutenbergr-0.4.1/gutenbergr/vignettes/gutenbergr.Rmd |only gutenbergr-0.5.0/gutenbergr/DESCRIPTION | 13 gutenbergr-0.5.0/gutenbergr/MD5 | 66 +- gutenbergr-0.5.0/gutenbergr/NAMESPACE | 2 gutenbergr-0.5.0/gutenbergr/NEWS.md | 6 gutenbergr-0.5.0/gutenbergr/R/globals.R | 15 gutenbergr-0.5.0/gutenbergr/R/gutenberg_add_sections.R |only gutenbergr-0.5.0/gutenbergr/R/gutenberg_cache.R | 2 gutenbergr-0.5.0/gutenbergr/R/gutenbergr-package.R | 1 gutenbergr-0.5.0/gutenbergr/R/utils.R | 27 gutenbergr-0.5.0/gutenbergr/R/zzz.R | 2 gutenbergr-0.5.0/gutenbergr/README.md | 297 +++------- gutenbergr-0.5.0/gutenbergr/build/vignette.rds |binary gutenbergr-0.5.0/gutenbergr/data/gutenberg_authors.rda |binary gutenbergr-0.5.0/gutenbergr/data/gutenberg_languages.rda |binary gutenbergr-0.5.0/gutenbergr/data/gutenberg_metadata.rda |binary gutenbergr-0.5.0/gutenbergr/data/gutenberg_subjects.rda |binary gutenbergr-0.5.0/gutenbergr/inst/doc/intro.R |only gutenbergr-0.5.0/gutenbergr/inst/doc/intro.Rmd |only gutenbergr-0.5.0/gutenbergr/inst/doc/intro.html |only gutenbergr-0.5.0/gutenbergr/inst/doc/text-mining.R |only gutenbergr-0.5.0/gutenbergr/inst/doc/text-mining.Rmd |only gutenbergr-0.5.0/gutenbergr/inst/doc/text-mining.html |only gutenbergr-0.5.0/gutenbergr/man/discard_end_while.Rd | 7 gutenbergr-0.5.0/gutenbergr/man/discard_start_while.Rd | 3 gutenbergr-0.5.0/gutenbergr/man/figures/nrc-bins-1.png |only gutenbergr-0.5.0/gutenbergr/man/figures/nrc-chapters-1.png |only gutenbergr-0.5.0/gutenbergr/man/figures/sentiment-plot-1.png |only gutenbergr-0.5.0/gutenbergr/man/figures/tf-idf-1.png |only gutenbergr-0.5.0/gutenbergr/man/figures/top-words-1.png |only gutenbergr-0.5.0/gutenbergr/man/gutenberg_add_sections.Rd |only gutenbergr-0.5.0/gutenbergr/man/gutenberg_cache_dir.Rd | 1 gutenbergr-0.5.0/gutenbergr/man/gutenberg_cache_set.Rd | 1 gutenbergr-0.5.0/gutenbergr/man/keep_while.Rd | 3 gutenbergr-0.5.0/gutenbergr/man/maybe_message.Rd |only gutenbergr-0.5.0/gutenbergr/man/read_url.Rd | 4 gutenbergr-0.5.0/gutenbergr/tests/testthat/helper-gutenberg_add_sections.R |only gutenbergr-0.5.0/gutenbergr/tests/testthat/test-gutenberg_add_sections.R |only gutenbergr-0.5.0/gutenbergr/tests/testthat/test-gutenberg_mirrors.R | 58 + gutenbergr-0.5.0/gutenbergr/tests/testthat/test-integration-gutenberg_api.R | 58 + gutenbergr-0.5.0/gutenbergr/vignettes/intro.Rmd |only gutenbergr-0.5.0/gutenbergr/vignettes/text-mining.Rmd |only 45 files changed, 317 insertions(+), 249 deletions(-)
Title: High-Level Plotting Built Upon 'ggplot2' and Other Plotting
Packages
Description: Provides high-level API and a wide range of options to create stunning, publication-quality plots effortlessly.
It is built upon 'ggplot2' and other plotting packages, and is designed to be easy to use and to work seamlessly with 'ggplot2' objects.
It is particularly useful for creating complex plots with multiple layers, facets, and annotations.
It also provides a set of functions to create plots for specific types of data, such as Venn diagrams, alluvial diagrams, and phylogenetic trees.
The package is designed to be flexible and customizable, and to work well with the 'ggplot2' ecosystem.
The API can be found at <https://pwwang.github.io/plotthis/reference/index.html>.
Author: Panwen Wang [aut, cre]
Maintainer: Panwen Wang <pwwang@pwwang.com>
Diff between plotthis versions 0.10.0 dated 2026-02-06 and 0.11.1 dated 2026-03-15
DESCRIPTION | 9 MD5 | 106 ++++---- NAMESPACE | 2 NEWS.md | 39 +++ R/areaplot.R | 52 ++-- R/barplot.R | 130 +++++----- R/boxviolinplot.R | 330 ++++++++++++++++++++------- R/clustreeplot.R | 43 ++- R/corplot.R | 45 +-- R/data.R | 35 ++ R/densityplot.R | 72 ++--- R/dimplot.R | 470 +++++++++++++++++++++++++++++++++++++-- R/dotplot.R | 108 ++++++-- R/enrich.R | 42 +-- R/gsea.R | 27 -- R/heatmap.R | 306 +++++++++++++++++++++++-- R/jitterplot.R | 61 +++-- R/lineplot.R | 51 +--- R/manhattanplot.R | 13 - R/network.R | 21 - R/piechart.R | 26 -- R/qqplot.R | 22 - R/radarplot.R | 41 +-- R/rarefractionplot.R | 23 - R/ringplot.R | 26 -- R/roccurve.R | 22 - R/sankeyplot.R | 29 ++ R/scatterplot.R | 22 - R/trendplot.R | 45 ++- R/upsetplot.R | 150 +++++++++--- R/utils.R | 172 ++++++++++++++ R/velocityplot.R | 11 R/venndiagram.R | 31 +- R/volcanoplot.R | 21 - R/wordcloudplot.R | 18 - data/palette_list.rda |binary man/BoxViolinPlot-internal.Rd | 42 ++- man/BoxViolinPlotAtomic.Rd | 42 ++- man/DensityHistoPlotAtomic.Rd | 3 man/DimPlotAtomic.Rd | 7 man/DimPlotAtomic3D.Rd |only man/Heatmap.Rd | 26 +- man/HeatmapAtomic.Rd | 11 man/RadarPlotAtomic.Rd | 6 man/UpsetPlot.Rd | 29 ++ man/UpsetPlotAtomic.Rd | 5 man/VennDiagram.Rd | 5 man/VennDiagramAtomic.Rd | 3 man/boxviolinplot.Rd | 77 ++++-- man/calculate_plot_dimensions.Rd |only man/densityhistoplot.Rd | 4 man/dimplot.Rd | 23 + man/palette_list.Rd | 35 ++ man/process_heatmap_data.Rd | 11 man/radarplot.Rd | 7 55 files changed, 2218 insertions(+), 739 deletions(-)