Title: Mars Solar Radiation
Description: A set of functions to calculate solar irradiance and insolation on Mars horizontal and inclined surfaces. Based on NASA Technical Memoranda 102299, 103623, 105216, 106321, and 106700, i.e. the canonical Mars solar radiation papers.
Author: Georges Labreche [aut, cre]
Maintainer: Georges Labreche <georges@tanagraspace.com>
Diff between marsrad versions 1.0.0 dated 2025-11-27 and 1.0.1 dated 2026-05-09
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- README.md | 11 +++++++++++ 3 files changed, 17 insertions(+), 6 deletions(-)
Title: GWAS-to-CRISPR Data Pipeline for High-Throughput SNP Target
Extraction
Description: Provides a reproducible pipeline to conduct genome-wide association studies
(GWAS) and extract single-nucleotide polymorphisms (SNPs) for a human trait or
disease. Given aggregated GWAS dataset(s) and a user-defined significance threshold,
the package retrieves significant SNPs from the GWAS Catalog and the
Experimental Factor Ontology (EFO), annotates their gene context, and can write a
harmonised metadata table in comma-separated values (CSV) format, genomic intervals in the Browser Extensible Data
(BED) format, and sequences in the FASTA (text-based sequence) format with user-defined flanking regions for clustered
regularly interspaced short palindromic repeats (CRISPR) guide design.
For details on the resources and methods see:
Buniello et al. (2019) <doi:10.1093/nar/gky1120>;
Sollis et al. (2023) <doi:10.1093/nar/gkac1010>;
Jinek et al. (2012) <doi:10.1126/science.1225829>;
Malone et al. (2010) <doi:10.1093/bioinformatics/btq099>;
Experimental Factor Ontolo [...truncated...]
Author: Othman S. I. Mohammed [aut, cre],
LEOPARD.LY LTD [cph]
Maintainer: Othman S. I. Mohammed <admin@leopard.ly>
Diff between gwas2crispr versions 0.1.2 dated 2025-08-22 and 0.1.4 dated 2026-05-09
DESCRIPTION | 18 LICENSE | 2 MD5 | 35 - NAMESPACE | 3 NEWS.md | 74 +- R/cran-globals.R |only R/fetch_gwas.R | 970 +++++++++++++++++++++++++++++++--- R/run_gwas2crispr.R | 555 +++++++++++-------- README.md | 430 ++++++--------- build/partial.rdb |only build/vignette.rds |binary inst/doc/gwas2crispr.R | 65 +- inst/doc/gwas2crispr.Rmd | 119 ++-- inst/doc/gwas2crispr.html | 225 ++++--- man/fetch_gwas.Rd | 35 - man/gwas2crispr-package.Rd |only man/run_gwas2crispr.Rd | 65 +- tests/testthat/test-fetch_gwas.R | 199 +++++- tests/testthat/test-run_gwas2crispr.R | 264 ++++++++- vignettes/gwas2crispr.Rmd | 119 ++-- 20 files changed, 2256 insertions(+), 922 deletions(-)
Title: Density and Abundance from Distance-Sampling Surveys
Description: Distance-sampling (<doi:10.1007/978-3-319-19219-2>)
is a field survey and analytical method that estimates density and
abundance of survey targets (e.g., animals) when
detection probability declines with observation distance.
Distance-sampling is popular in ecology,
especially when survey targets are observed from aerial platforms (e.g.,
airplane or drone), surface vessels (e.g., boat or truck), or along
walking transects. Analysis involves fitting smooth (parametric) curves to
histograms of observation distances and using those functions to
adjust density estimates for missed targets. Routines included here
fit curves to observation distance histograms, estimate effective
sampling area, density of targets in surveyed areas, and the abundance
of targets in a surrounding study area. Confidence interval estimation
uses built-in bootstrap resampling. Help files are extensive and have been
vetted by multiple authors. Many tutorials are available on the package's
website (URL below).
Author: Trent McDonald [cre, aut],
Jason Carlisle [aut],
Aidan McDonald [aut] ,
Ryan Nielson [ctb] ,
Ben Augustine [ctb] ,
James Griswald [ctb] ,
Patrick McKann [ctb] ,
Lacey Jeroue [ctb] ,
Hoffman Abigail [ctb] ,
Kleinsausser Michael [ctb] ,
Joel Reynolds [ [...truncated...]
Maintainer: Trent McDonald <trent@mcdonalddatasciences.com>
Diff between Rdistance versions 4.4.0 dated 2026-04-22 and 4.4.2 dated 2026-05-09
DESCRIPTION | 9 MD5 | 413 +++++++++++++++++------------------ NEWS.md | 16 + R/AIC.dfunc.R | 16 - R/EDR.R | 6 R/ESW.r | 10 R/Gamma.like.R | 18 - R/GammaModes.R | 4 R/GammaReparam.R | 6 R/Optim.R | 2 R/RdistDf.R | 114 ++++----- R/Rdistance-package.R | 137 +++++------ R/RdistanceControls.R | 77 ++---- R/abundEstim.R | 115 ++++----- R/autoDistSamp.R | 22 - R/bootstrap.R | 17 + R/bspline.expansion.R | 8 R/checkUnits.R | 8 R/coef.dfunc.r | 2 R/colorize.R | 18 - R/cosine.expansion.R | 24 +- R/dE.single.R | 289 ++++++++++-------------- R/dfuncEstim.R | 16 - R/dfuncEstimErrMessage.R | 2 R/differentiableLikelihoods.R | 6 R/distances.R | 2 R/effectiveDistance.R | 34 +- R/estimateN.r | 6 R/expandW.R | 8 R/expansionTerms.R | 40 +-- R/getNCores.R | 8 R/gxEstim.r | 76 +++--- R/halfnorm.like.R | 64 ++--- R/hermite.expansion.R | 16 - R/huber.cumFunc.R | 20 - R/huber.like.R | 8 R/insertOneStepBreaks.R | 4 R/integrateDfuncs.R | 4 R/integrateGammaLines.R | 10 R/integrateHalfnormLines.R | 8 R/integrateHalfnormPoints.R | 6 R/integrateHazrateLines.R | 8 R/integrateHuberLines.R | 4 R/integrateNegexpLines.R | 6 R/integrateNegexpPoints.R | 4 R/integrateNumeric.R | 26 +- R/integrateOneStepLines.R | 4 R/integrateOneStepNumeric.R | 10 R/integrateOneStepPoints.R | 46 +-- R/integrateTriangleLines.R | 4 R/intercept.only.R | 4 R/is.RdistDf.R | 54 +--- R/is.Unitless.R | 16 - R/lines.dfunc.R | 14 - R/maximize.g.r | 6 R/mlEstimates.R | 6 R/nCovars.R | 4 R/nLL.R | 23 + R/observationType.R | 8 R/oneBsIter.R | 23 + R/oneStep.like.R | 4 R/oneStep.start.limits.R | 2 R/parseModel.R | 8 R/perpDists.R | 14 - R/plot.dfunc.para.R | 76 +++--- R/plot.dfunc.r | 26 +- R/predLikelihood.R | 16 - R/predict.dfunc.R | 128 +++++----- R/print.abund.r | 14 - R/print.dfunc.r | 10 R/secondDeriv.R | 38 +-- R/setOptimizer.R | 80 +++--- R/simple.expansion.r | 16 - R/simpsonCoefs.R | 12 - R/sine.expansion.R | 14 - R/sparrowDetectionData.R | 18 - R/sparrowDf.R | 42 +-- R/sparrowDfuncObserver.R | 8 R/sparrowSiteData.R | 26 +- R/startLimits.R | 10 R/summary.abund.R | 16 - R/summary.dfunc.R | 26 +- R/summary.rowwise_df.R | 10 R/thrasherDetectionData.R | 12 - R/thrasherDf.R | 34 +- R/thrasherSiteData.R | 22 - R/transectType.R | 18 - R/triangle.like.R | 4 R/triangle.start.limits.R | 2 R/unitHelper_%#%.R | 12 - R/unitHelper_%acre%.R | 2 R/unitHelper_%m%.R | 8 R/unitHelper_dropUnits.R | 4 R/unnest.R | 4 R/varcovarEstim.R | 6 R/zzz.R | 6 build/partial.rdb |binary inst |only man/AIC.dfunc.Rd | 60 ++--- man/EDR.Rd | 44 +-- man/ESW.Rd | 66 ++--- man/Gamma.like.Rd | 126 +++++----- man/Gamma.start.limits.Rd | 26 +- man/GammaModes.Rd | 8 man/GammaReparam.Rd | 12 - man/HookeJeeves.Rd | 34 +- man/Nlminb.Rd | 34 +- man/Optim.Rd | 34 +- man/RdistDf.Rd | 334 ++++++++++++++-------------- man/Rdistance-package.Rd | 146 +++++------- man/RdistanceControls.Rd | 150 ++++++------ man/abundEstim.Rd | 326 +++++++++++++-------------- man/autoDistSamp.Rd | 264 +++++++++++----------- man/bcCI.Rd | 2 man/bootstrap.Rd | 52 ++-- man/bspline.expansion.Rd | 22 - man/checkNEvalPts.Rd | 2 man/checkUnits.Rd | 10 man/coef.dfunc.Rd | 10 man/colorize.Rd | 38 +-- man/cosine.expansion.Rd | 42 +-- man/dE.multi.Rd | 312 ++++++++++++-------------- man/dE.single.Rd | 459 ++++++++++++++++++--------------------- man/dfuncEstim.Rd | 421 ++++++++++++++++------------------- man/differentiableLikelihoods.Rd | 6 man/distances.Rd | 22 - man/effectiveDistance.Rd | 58 ++-- man/effort.Rd | 10 man/errDataUnk.Rd | 2 man/estimateN.Rd | 144 ++++++------ man/expandW.Rd | 28 +- man/expansionTerms.Rd | 76 +++--- man/getNCores.Rd | 24 +- man/groupSizes.Rd | 16 - man/gxEstim.Rd | 123 +++++----- man/halfnorm.like.Rd | 118 +++++----- man/halfnorm.start.limits.Rd | 26 +- man/hazrate.like.Rd | 100 ++++---- man/hazrate.start.limits.Rd | 26 +- man/hermite.expansion.Rd | 38 +-- man/huber.cumFunc.Rd | 34 +- man/huber.like.Rd | 104 ++++---- man/huber.start.limits.Rd | 28 +- man/insertOneStepBreaks.Rd | 12 - man/integrateDfuncs.Rd | 62 ++--- man/integrateGammaLines.Rd | 72 +++--- man/integrateHalfnormLines.Rd | 72 +++--- man/integrateHalfnormPoints.Rd | 68 ++--- man/integrateHazrateLines.Rd | 78 +++--- man/integrateHuberLines.Rd | 62 ++--- man/integrateKey.Rd | 8 man/integrateNegexpLines.Rd | 66 ++--- man/integrateNegexpPoints.Rd | 64 ++--- man/integrateNumeric.Rd | 110 ++++----- man/integrateOneStepLines.Rd | 60 ++--- man/integrateOneStepNumeric.Rd | 96 ++++---- man/integrateOneStepPoints.Rd | 62 ++--- man/integrateTriangleLines.Rd | 66 ++--- man/intercept.only.Rd | 8 man/is.RdistDf.Rd | 52 ++-- man/is.Unitless.Rd | 18 - man/is.points.Rd | 10 man/is.smoothed.Rd | 8 man/likeParamNames.Rd | 6 man/lines.dfunc.Rd | 46 +-- man/maximize.g.Rd | 2 man/mlEstimates.Rd | 22 - man/model.matrix.dfunc.Rd | 2 man/nCovars.Rd | 8 man/nLL.Rd | 62 ++--- man/negexp.like.Rd | 90 +++---- man/negexp.start.limits.Rd | 28 +- man/observationType.Rd | 14 - man/oneBsIter.Rd | 84 +++---- man/oneStep.like.Rd | 116 ++++----- man/oneStep.start.limits.Rd | 30 +- man/parseModel.Rd | 146 ++++++------ man/perpDists.Rd | 12 - man/plot.dfunc.Rd | 139 +++++------ man/plot.dfunc.para.Rd | 117 ++++----- man/predDensity.Rd | 20 - man/predDfuncs.Rd | 36 +-- man/predLikelihood.Rd | 34 +- man/predict.dfunc.Rd | 289 ++++++++++++------------ man/print.abund.Rd | 12 - man/print.dfunc.Rd | 10 man/secondDeriv.Rd | 74 +++--- man/setOptimizer.Rd | 26 +- man/simple.expansion.Rd | 38 +-- man/simpsonCoefs.Rd | 18 - man/sine.expansion.Rd | 40 +-- man/sparrowDetectionData.Rd | 48 ++-- man/sparrowDf.Rd | 68 ++--- man/sparrowDfuncObserver.Rd | 14 - man/sparrowSiteData.Rd | 54 ++-- man/startLimits.Rd | 38 +-- man/summary.abund.Rd | 26 +- man/summary.dfunc.Rd | 60 ++--- man/summary.rowwise_df.Rd | 46 +-- man/thrasherDetectionData.Rd | 34 +- man/thrasherDf.Rd | 58 ++-- man/thrasherSiteData.Rd | 38 +-- man/transectType.Rd | 18 - man/triangle.like.Rd | 112 ++++----- man/triangle.start.limits.Rd | 30 +- man/unitHelpers.Rd | 32 +- man/unnest.Rd | 18 - man/varcovarEstim.Rd | 36 +-- 208 files changed, 4926 insertions(+), 5083 deletions(-)
Title: Piecewise Exponential Distribution Prediction Model
Description: Build piecewise exponential survival model for study design (planning) and event/timeline prediction.
Author: Tianchen Xu [aut, cre] ,
Wen Zhang [aut]
Maintainer: Tianchen Xu <zjph602xutianchen@gmail.com>
Diff between PWEXP versions 0.5.0 dated 2024-03-12 and 0.5.1 dated 2026-05-09
DESCRIPTION | 18 +++++++++++------- MD5 | 12 ++++++------ build/vignette.rds |binary inst/NEWS.Rd | 6 ++++++ inst/doc/Theory_Notes.R | 2 +- inst/doc/Theory_Notes.html | 7 ++++--- man/predict.Rd | 2 +- 7 files changed, 29 insertions(+), 18 deletions(-)
Title: Hydro-Meteorology Time-Series
Description: Functions for the management and treatment of hydrology and
meteorology time-series stored in a 'Sqlite' data base.
Author: Pierre Chevallier [aut, cre]
Maintainer: Pierre Chevallier <pierre.chevallier@mailo.com>
Diff between htsr versions 2.1.6 dated 2024-08-17 and 2.1.7 dated 2026-05-09
htsr-2.1.6/htsr/R/d_convert_hubeau.R |only htsr-2.1.6/htsr/man/d_convert_hubeau.Rd |only htsr-2.1.7/htsr/DESCRIPTION | 10 +- htsr-2.1.7/htsr/MD5 | 24 ++--- htsr-2.1.7/htsr/R/d_convert_eaufrance.R |only htsr-2.1.7/htsr/R/d_convert_meteofrance_d.R | 98 +++++++++++++++++--- htsr-2.1.7/htsr/R/d_convert_meteofrance_h.R | 118 ++++++++++++++++++++----- htsr-2.1.7/htsr/build/vignette.rds |binary htsr-2.1.7/htsr/inst/doc/htsr-package.Rmd | 5 - htsr-2.1.7/htsr/inst/doc/htsr-package.html | 7 - htsr-2.1.7/htsr/man/d_convert_eaufrance.Rd |only htsr-2.1.7/htsr/man/d_convert_meteofrance_d.Rd | 79 ++++++++++++++-- htsr-2.1.7/htsr/man/d_convert_meteofrance_h.Rd | 76 +++++++++++++++- htsr-2.1.7/htsr/man/htsr-package.Rd | 5 + htsr-2.1.7/htsr/vignettes/htsr-package.Rmd | 5 - 15 files changed, 349 insertions(+), 78 deletions(-)
Title: Rectangle Nested Lists
Description: A tool to rectangle a nested list, that is to convert it into
a 'tibble'. This is done automatically or according to a given
specification. A common use case is for nested lists coming from
parsing 'JSON' files, or the 'JSON' responses of 'REST' 'APIs'.
'Rectangling' uses the 'vctrs' package, and therefore offers a wide
support of vector types.
Author: Jon Harmon [aut, cre] ,
Maximilian Girlich [aut, cph],
Kirill Mueller [ctb]
Maintainer: Jon Harmon <jonthegeek@gmail.com>
This is a re-admission after prior archival of version 0.3.1 dated 2024-01-11
Diff between tibblify versions 0.3.1 dated 2024-01-11 and 0.4.0 dated 2026-05-09
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Title: Ecological Inference of RxC Tables by Latent Structure
Approaches
Description: Estimates RxC (R by C) vote transfer matrices (ecological contingency tables) from aggregate data building on Thomsen (1987) and Park (2008) approaches.
References:
Park, W.-H. (2008). ''Ecological Inference and Aggregate Analysis of Election''. PhD Dissertation. University of Michigan. <https://deepblue.lib.umich.edu/bitstream/handle/2027.42/58525/wpark_1.pdf>
Pavía, J.M. and Thomsen, S.R. (2025) ''ecolRxC: Ecological inference estimation of RxC tables using latent structure approaches''. Political Science Research and Methods, 13(4), 943-961. <doi:10.1017/psrm.2024.57>
Thomsen, S.R. (1987, ISBN:87-7335-037-2). ''Danish Elections 1920 79: a Logit Approach to Ecological Analysis and Inference''. Politica, Aarhus, Denmark.
Acknowledgements:
The authors wish to thank Generalitat Valenciana (Conselleria de Educacion, Cultura y Universidades), grant CIACIO/2023/031, and Ministerio de Economia e Innovacion, grant PID2021-128228NB-I00, for supporting this research.
Author: Jose M. Pavia [aut, cre] ,
Soeren Risbjerg Thomsen [aut]
Maintainer: Jose M. Pavia <jose.m.pavia@uv.es>
Diff between ecolRxC versions 0.1.1-10 dated 2023-03-31 and 0.1.1-16 dated 2026-05-09
DESCRIPTION | 19 MD5 | 25 NAMESPACE | 2 NEWS.md |only R/RcppExports.R |only R/auxiliary_functions.R | 3569 ++++++++++++++++++++++++++++-------------------- R/ecolRxC.R | 538 +++++-- R/plot.R | 300 ++-- R/summary.R | 2 R/zzz.R |only build |only man/ecolRxC.Rd | 108 - man/summary.ecolRxC.Rd | 2 src |only 14 files changed, 2774 insertions(+), 1791 deletions(-)
Title: Composite Likelihood Inference and Diagnostics for Replicated
Spatial Ordinal Data
Description: Composite likelihood parameter estimate and asymptotic covariance matrix are calculated for the spatial ordinal data with replications, where spatial ordinal response with covariate and both spatial exponential covariance within subject and independent and identically distributed measurement error. Parameter estimation can be performed by either solving the gradient function or maximizing composite log-likelihood. Parametric bootstrapping is used to estimate the Godambe information matrix and hence the asymptotic standard error and covariance matrix with parallel processing option. Moreover, the proposed surrogate residual, which extends the results of Liu and Zhang (2017) <doi: 10.1080/01621459.2017.1292915>, can act as a useful tool for model diagnostics.
Author: Ting Fung Ma [cre, aut],
Pingping Wang [aut],
Jun Zhu [aut],
Dipankar Bandyopadhyay [ctb],
Yincai Tang [ctb]
Maintainer: Ting Fung Ma <tingfung@mailbox.sc.edu>
This is a re-admission after prior archival of version 1.7.0 dated 2022-03-25
Diff between clordr versions 1.7.0 dated 2022-03-25 and 1.7.2 dated 2026-05-09
DESCRIPTION | 17 ++++++++--------- MD5 | 4 ++-- NAMESPACE | 36 ++++++++++++++++++------------------ 3 files changed, 28 insertions(+), 29 deletions(-)
Title: Unified Climate Indices for Temperature, Precipitation, and
Drought
Description: Compute the standard suite of climate indices from daily
weather observations. Provides the canonical 'ETCCDI' 27 (Expert
Team on Climate Change Detection and Indices), the 'ET-SCI'
heatwave and cold-wave families plus the Excess Heat Factor of
Nairn and Fawcett (2013), and agroclimatic, drought, and
human-comfort families. Drought indices ('SPI', 'SPEI') accept a
choice of distribution (gamma or Pearson III for SPI; log-logistic
or generalised extreme value for SPEI). Reference
evapotranspiration is available via Hargreaves and the FAO-56
Penman-Monteith method (Allen et al. 1998). Percentile-based
indices support the Zhang (2005) in-base bootstrap. Daily inputs
are numeric vectors plus a 'Date' vector; outputs are tidy data
frames. Optional gridded support via 'terra' applies any index
over a 'SpatRaster' and reads 'netCDF' input. No external API
calls; pairs with data packages such as 'readnoaa'. References:
Alexander et al. (2006) <doi:10.1029/2005JD006290>; Zhang et al.
(201 [...truncated...]
Author: Charles Coverdale [aut, cre]
Maintainer: Charles Coverdale <charlesfcoverdale@gmail.com>
Diff between climatekit versions 0.1.0 dated 2026-03-23 and 0.2.0 dated 2026-05-09
DESCRIPTION | 42 ++-- MD5 | 94 ++++++--- NAMESPACE | 29 ++ NEWS.md | 121 ++++++++++++ R/agroclimatic.R | 75 +++++-- R/bootstrap.R |only R/compute.R | 24 ++ R/convert.R | 3 R/drought.R | 335 +++++++++++++++++++++++++++++++-- R/ehf.R |only R/gridded.R |only R/heatwave.R |only R/metadata.R | 359 +++++++++++++++++++++++++++++++++++- R/precipitation.R | 121 +++++++++++- R/temperature.R | 356 +++++++++++++++++++++++++++++++++++ R/utils.R | 73 +++++++ README.md | 241 ++++++++++++++++-------- build |only inst |only man/ck_apply_grid.Rd |only man/ck_branas.Rd | 17 + man/ck_browse.Rd |only man/ck_catalogue.Rd |only man/ck_csdi.Rd |only man/ck_cwa.Rd |only man/ck_cwd.Rd |only man/ck_cwf.Rd |only man/ck_cwm.Rd |only man/ck_cwn.Rd |only man/ck_ehf.Rd |only man/ck_etccdi_27.Rd |only man/ck_first_frost.Rd | 11 - man/ck_from_netcdf.Rd |only man/ck_hwa.Rd |only man/ck_hwd.Rd |only man/ck_hwf.Rd |only man/ck_hwm.Rd |only man/ck_hwn.Rd |only man/ck_last_frost.Rd | 10 - man/ck_pet_pm.Rd |only man/ck_r95p.Rd |only man/ck_r99p.Rd |only man/ck_spei.Rd | 7 man/ck_spi.Rd | 23 +- man/ck_tn10p.Rd |only man/ck_tn90p.Rd |only man/ck_tnn.Rd |only man/ck_tnx.Rd |only man/ck_total_precip.Rd | 17 + man/ck_tx10p.Rd |only man/ck_tx90p.Rd |only man/ck_txn.Rd |only man/ck_txx.Rd |only man/ck_warm_spell.Rd | 16 + man/ck_wsdi.Rd |only man/climatekit-package.Rd | 3 tests/testthat/test-agroclimatic.R | 39 +++ tests/testthat/test-compute.R | 140 ++++++++++++++ tests/testthat/test-drought.R | 79 +++++++ tests/testthat/test-ehf.R |only tests/testthat/test-gridded.R |only tests/testthat/test-heatwave.R |only tests/testthat/test-precipitation.R | 83 ++++++++ tests/testthat/test-temperature.R | 233 +++++++++++++++++++++++ vignettes |only 65 files changed, 2357 insertions(+), 194 deletions(-)
Title: Credential Chain for Seamless 'OAuth 2.0' Authentication to
'Azure Services'
Description: Implements a credential chain for 'Azure OAuth 2.0' authentication
based on the package 'httr2''s 'OAuth' framework. Sequentially attempts authentication
methods until one succeeds. During development allows interactive
browser-based flows ('Device Code' and 'Auth Code' flows) and non-interactive
flow ('Client Secret') in batch mode.
Author: Pedro Baltazar [aut, cre]
Maintainer: Pedro Baltazar <pedrobtz@gmail.com>
Diff between azr versions 0.3.3 dated 2026-05-04 and 0.3.4 dated 2026-05-09
azr-0.3.3/azr/man/dot-azr_defaults.Rd |only azr-0.3.3/azr/man/set_azr_defaults.Rd |only azr-0.3.4/azr/DESCRIPTION | 6 azr-0.3.4/azr/MD5 | 43 +++--- azr-0.3.4/azr/NAMESPACE | 4 azr-0.3.4/azr/NEWS.md | 5 azr-0.3.4/azr/R/azure-storage-client.R | 82 ++++++++++-- azr-0.3.4/azr/R/constants.R | 26 +-- azr-0.3.4/azr/R/credential-interactive.R | 13 + azr-0.3.4/azr/R/credential-workload-identity.R |only azr-0.3.4/azr/R/default-credential.R | 129 ++++++++++++------- azr-0.3.4/azr/R/defaults.R | 144 +++++++++++----------- azr-0.3.4/azr/R/utils.R | 66 ++++++---- azr-0.3.4/azr/man/AuthCodeCredential.Rd | 4 azr-0.3.4/azr/man/DeviceCodeCredential.Rd | 4 azr-0.3.4/azr/man/InteractiveCredential.Rd | 5 azr-0.3.4/azr/man/WorkloadIdentityCredential.Rd |only azr-0.3.4/azr/man/api_storage_client.Rd | 17 +- azr-0.3.4/azr/man/azr_storage_client.Rd | 13 + azr-0.3.4/azr/man/azure_storage_endpoints.Rd |only azr-0.3.4/azr/man/default_azure_client_id.Rd | 1 azr-0.3.4/azr/man/default_azure_host.Rd | 1 azr-0.3.4/azr/man/default_azure_tenant_id.Rd | 1 azr-0.3.4/azr/man/default_federated_token_file.Rd |only azr-0.3.4/azr/man/default_storage_endpoint.Rd |only azr-0.3.4/azr/man/environment_variables.Rd | 2 26 files changed, 351 insertions(+), 215 deletions(-)
Title: Ultrahigh-Resolution Mass Spectrometry Data Evaluation for
Complex Organic Matter
Description: Provides tools for assigning molecular formulas from exact masses
obtained by ultrahigh-resolution mass spectrometry. The methodology follows
the workflow described in Leefmann et al. (2019) <doi:10.1002/rcm.8315>.
The package supports the inspection, filtering and visualization of
molecular formula data and includes utilities for calculating common
molecular parameters (e.g., double bond equivalents, DBE). A graphical
user interface is available via the 'shiny'-based 'ume' application.
Author: Boris Koch [aut, cre] ,
Stephan Frickenhaus [ctb] ,
Oliver Lechtenfeld [ctb] ,
Tim Leefmann [ctb] ,
Fabian Moye [ctb]
Maintainer: Boris Koch <boris.koch@awi.de>
Diff between ume versions 1.5.2 dated 2025-12-12 and 1.6.1 dated 2026-05-09
ume-1.5.2/ume/R/extract_metadata_from_UFZ_files.R |only ume-1.5.2/ume/R/plots.R |only ume-1.5.2/ume/R/uplot_dbe_vs_ppm.R |only ume-1.5.2/ume/man/extract_metadata_from_ufz_files.Rd |only ume-1.5.2/ume/man/uplot_dbe_vs_ppm.Rd |only ume-1.6.1/ume/DESCRIPTION | 29 ume-1.6.1/ume/MD5 | 262 ++--- ume-1.6.1/ume/NAMESPACE | 9 ume-1.6.1/ume/NEWS.md | 92 + ume-1.6.1/ume/R/add_known_mf.R | 93 + ume-1.6.1/ume/R/assign_formulas.R | 10 ume-1.6.1/ume/R/build_isotope_map.R |only ume-1.6.1/ume/R/calc_dbe.R | 125 +- ume-1.6.1/ume/R/calc_eval_params.R | 6 ume-1.6.1/ume/R/calc_indeces.R | 202 ++-- ume-1.6.1/ume/R/calc_isotope_pattern.R |only ume-1.6.1/ume/R/calc_ma.R | 18 ume-1.6.1/ume/R/calc_neutral_mass.R | 1 ume-1.6.1/ume/R/calc_nm.R | 5 ume-1.6.1/ume/R/calc_recalibrate_ms.R | 2 ume-1.6.1/ume/R/check_neutral_mf.R |only ume-1.6.1/ume/R/classify_files.R | 2 ume-1.6.1/ume/R/convert_data_table_to_molecular_formulas.R | 306 ++++-- ume-1.6.1/ume/R/convert_molecular_formula_to_data_table.R | 484 ++++++++-- ume-1.6.1/ume/R/create_custom_formula_library.R | 18 ume-1.6.1/ume/R/create_isotope_expanded_table.R |only ume-1.6.1/ume/R/create_ume_formula_library.R | 7 ume-1.6.1/ume/R/data.R | 25 ume-1.6.1/ume/R/eval_isotopes.R | 1 ume-1.6.1/ume/R/export_ume_results.R | 2 ume-1.6.1/ume/R/f_colorz.R | 5 ume-1.6.1/ume/R/get_isotope_info.R | 7 ume-1.6.1/ume/R/global.R | 1 ume-1.6.1/ume/R/inchi_to_mf.R |only ume-1.6.1/ume/R/main_docu.R | 14 ume-1.6.1/ume/R/search_mf_targets.R |only ume-1.6.1/ume/R/theme_uplots.R | 34 ume-1.6.1/ume/R/tools.R | 66 + ume-1.6.1/ume/R/uplot_cluster.R | 8 ume-1.6.1/ume/R/uplot_cvm.R | 152 +-- ume-1.6.1/ume/R/uplot_dbe_minus_o_freq.R | 123 +- ume-1.6.1/ume/R/uplot_dbe_vs_c.R | 121 +- ume-1.6.1/ume/R/uplot_dbe_vs_ma.R |only ume-1.6.1/ume/R/uplot_dbe_vs_o.R | 102 +- ume-1.6.1/ume/R/uplot_freq_ma.R | 140 +- ume-1.6.1/ume/R/uplot_freq_vs_ppm.R | 5 ume-1.6.1/ume/R/uplot_hc_vs_m.R | 4 ume-1.6.1/ume/R/uplot_heteroatoms.R | 2 ume-1.6.1/ume/R/uplot_isotope_precision.R | 50 - ume-1.6.1/ume/R/uplot_kmd.R | 127 +- ume-1.6.1/ume/R/uplot_lcms.R | 2 ume-1.6.1/ume/R/uplot_ma_vs_mz.R | 2 ume-1.6.1/ume/R/uplot_ms.R | 144 +- ume-1.6.1/ume/R/uplot_n_mf_per_sample.R | 2 ume-1.6.1/ume/R/uplot_pca.R | 216 +++- ume-1.6.1/ume/R/uplot_ratios.R | 27 ume-1.6.1/ume/R/uplot_reproducibility.R | 2 ume-1.6.1/ume/R/uplot_ri_vs_sample.R | 2 ume-1.6.1/ume/R/uplot_vk.R | 127 -- ume-1.6.1/ume/R/uplots_layout_internal.R |only ume-1.6.1/ume/R/validate_isotope_presence.R |only ume-1.6.1/ume/README.md | 10 ume-1.6.1/ume/data/known_mf.rda |binary ume-1.6.1/ume/data/nice_labels_dt.rda |binary ume-1.6.1/ume/data/ume_logo_raster.rda |only ume-1.6.1/ume/inst/doc/ume.R | 109 +- ume-1.6.1/ume/inst/doc/ume.Rmd | 152 ++- ume-1.6.1/ume/inst/doc/ume.html | 375 ++++--- ume-1.6.1/ume/man/add_known_mf.Rd | 22 ume-1.6.1/ume/man/as_peaklist.Rd | 98 +- ume-1.6.1/ume/man/assign_formulas.Rd | 10 ume-1.6.1/ume/man/build_isotope_map.Rd |only ume-1.6.1/ume/man/calc_dbe.Rd | 34 ume-1.6.1/ume/man/calc_eval_params.Rd | 9 ume-1.6.1/ume/man/calc_isotope_pattern.Rd |only ume-1.6.1/ume/man/calc_iterr.Rd | 11 ume-1.6.1/ume/man/calc_ma.Rd | 14 ume-1.6.1/ume/man/check_neutral_mf.Rd |only ume-1.6.1/ume/man/check_table_schema.Rd | 44 ume-1.6.1/ume/man/classify_files.Rd | 162 +-- ume-1.6.1/ume/man/convert_data_table_to_molecular_formulas.Rd | 63 - ume-1.6.1/ume/man/convert_molecular_formula_to_data_table.Rd | 68 - ume-1.6.1/ume/man/create_custom_formula_library.Rd | 6 ume-1.6.1/ume/man/create_isotope_expanded_table.Rd |only ume-1.6.1/ume/man/create_ume_formula_library.Rd | 5 ume-1.6.1/ume/man/dot-as_peaklist_from_numeric.Rd | 72 - ume-1.6.1/ume/man/dot-extract_library_version.Rd | 36 ume-1.6.1/ume/man/dot-f_label.Rd | 76 - ume-1.6.1/ume/man/dot-filter_peaklist_basic.Rd | 62 - ume-1.6.1/ume/man/dot-load_peaklist_file.Rd | 66 - ume-1.6.1/ume/man/dot-msg.Rd | 60 - ume-1.6.1/ume/man/dot-palette_builders.Rd | 32 ume-1.6.1/ume/man/dot-prepare_peaklist_columns.Rd | 54 - ume-1.6.1/ume/man/dot-ume_schema_peaklist.Rd | 32 ume-1.6.1/ume/man/dot-uplots_require_columns.Rd |only ume-1.6.1/ume/man/download_library.Rd | 76 - ume-1.6.1/ume/man/eval_isotopes.Rd | 6 ume-1.6.1/ume/man/export_ume_results.Rd | 232 ++-- ume-1.6.1/ume/man/extract_aquisition_params.Rd | 6 ume-1.6.1/ume/man/extract_aquisition_params_from_folder.Rd | 6 ume-1.6.1/ume/man/f_colorz.Rd | 2 ume-1.6.1/ume/man/f_colpal_selection.Rd | 48 ume-1.6.1/ume/man/get_isotope_info.Rd | 6 ume-1.6.1/ume/man/inchi_to_mf.Rd |only ume-1.6.1/ume/man/is_ume_peaklist.Rd | 34 ume-1.6.1/ume/man/load_ume_results.Rd | 66 - ume-1.6.1/ume/man/main_docu.Rd | 14 ume-1.6.1/ume/man/masses.Rd | 6 ume-1.6.1/ume/man/order_columns.Rd | 2 ume-1.6.1/ume/man/read_xml_peaklist.Rd | 4 ume-1.6.1/ume/man/revert_column_names.Rd | 36 ume-1.6.1/ume/man/search_mf_targets.Rd |only ume-1.6.1/ume/man/theme_uplots.Rd | 46 ume-1.6.1/ume/man/ume_assign_formulas.Rd | 4 ume-1.6.1/ume/man/ume_logo_raster.Rd |only ume-1.6.1/ume/man/uplot_cluster.Rd | 6 ume-1.6.1/ume/man/uplot_cvm.Rd | 106 +- ume-1.6.1/ume/man/uplot_dbe_minus_o_freq.Rd | 79 + ume-1.6.1/ume/man/uplot_dbe_vs_c.Rd | 83 + ume-1.6.1/ume/man/uplot_dbe_vs_ma.Rd |only ume-1.6.1/ume/man/uplot_dbe_vs_o.Rd | 87 + ume-1.6.1/ume/man/uplot_freq_ma.Rd | 61 - ume-1.6.1/ume/man/uplot_freq_vs_ppm.Rd | 6 ume-1.6.1/ume/man/uplot_hc_vs_m.Rd | 6 ume-1.6.1/ume/man/uplot_heteroatoms.Rd | 6 ume-1.6.1/ume/man/uplot_isotope_precision.Rd | 58 + ume-1.6.1/ume/man/uplot_kmd.Rd | 105 +- ume-1.6.1/ume/man/uplot_lcms.Rd | 6 ume-1.6.1/ume/man/uplot_ma_vs_mz.Rd | 6 ume-1.6.1/ume/man/uplot_ms.Rd | 33 ume-1.6.1/ume/man/uplot_n_mf_per_sample.Rd | 6 ume-1.6.1/ume/man/uplot_pca.Rd | 66 - ume-1.6.1/ume/man/uplot_ratios.Rd | 18 ume-1.6.1/ume/man/uplot_reproducibility.Rd | 6 ume-1.6.1/ume/man/uplot_ri_vs_sample.Rd | 6 ume-1.6.1/ume/man/uplot_vk.Rd | 35 ume-1.6.1/ume/man/uplot_wrapper.Rd |only ume-1.6.1/ume/man/uplots_add_ume_label.Rd |only ume-1.6.1/ume/man/uplots_add_ume_logo.Rd |only ume-1.6.1/ume/man/uplots_map_labels.Rd |only ume-1.6.1/ume/man/validate_isotope_presence.Rd |only ume-1.6.1/ume/man/validate_peaklist.Rd | 120 +- ume-1.6.1/ume/tests/testthat/test-add_known_mf.R |only ume-1.6.1/ume/tests/testthat/test-convert_molecular_formula_to_data_table.R | 85 + ume-1.6.1/ume/tests/testthat/test-create_isotope_expanded_table.R |only ume-1.6.1/ume/tests/testthat/test-validate_isotope_presence.R |only ume-1.6.1/ume/vignettes/ume.Rmd | 152 ++- ume-1.6.1/ume/vignettes/vignette_ume.pdf |binary 148 files changed, 4115 insertions(+), 2487 deletions(-)
Title: Connect to ODBC Compatible Databases (using the DBI Interface)
Description: A DBI-compatible interface to ODBC databases.
Author: Jim Hester [aut],
Hadley Wickham [aut, cre],
Oliver Gjoneski [aut],
Simon Couch [aut],
lexicalunit [cph] ,
Google Inc. [cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between odbc versions 1.6.4.1 dated 2025-12-24 and 1.7.0 dated 2026-05-09
DESCRIPTION | 14 - MD5 | 76 ++++---- NAMESPACE | 3 NEWS.md | 52 +++++ R/connection-pane.R | 31 --- R/dbi-connection.R | 3 R/dbi-result.R | 7 R/dbi-table.R | 8 R/driver-databricks.R | 232 +++++++++++++++++++++--- R/driver-oracle.R | 2 R/driver-snowflake.R | 153 +++++++++++----- R/driver-sql-server.R | 10 - R/odbc-connection.R | 42 ---- R/utils.R | 75 +++++++- build/vignette.rds |binary configure | 15 - inst/doc/develop.Rmd | 2 inst/doc/develop.html | 4 man/Oracle.Rd | 2 man/SQLServer.Rd | 8 man/databricks.Rd | 27 +- man/driver-Snowflake.Rd | 4 man/odbcConnectionActions.Rd | 2 man/odbcConnectionColumns.Rd | 4 man/odbcConnectionIcon.Rd | 1 man/snowflake.Rd | 16 + src/nanodbc/nanodbc.cpp | 22 ++ src/odbc_result.cpp | 91 +++++++-- src/odbc_result.h | 40 ++++ src/utils.cpp | 11 - src/utils.h | 11 - tests/testthat/_snaps/driver-databricks.md | 66 ++++++- tests/testthat/_snaps/driver-snowflake.md | 12 - tests/testthat/test-driver-databricks.R | 219 +++++++++++++++++++++++ tests/testthat/test-driver-snowflake.R | 271 ++++++++++++++++++++++++++++- tests/testthat/test-driver-sql-server.R | 46 ++++ tests/testthat/test-odbc-connection.R | 33 --- tests/testthat/test-utils.R | 50 +++++ vignettes/develop.Rmd | 2 39 files changed, 1348 insertions(+), 319 deletions(-)
Title: Data Cleaner for Anthropometric Measurements
Description: Identifies implausible anthropometric (e.g., height,
weight) measurements in irregularly spaced longitudinal datasets, such as those from electronic health records.
Author: Carrie Daymont [ctb, cre],
Robert Grundmeier [aut],
Jeffrey Miller [aut],
Diego Campos [aut],
Dan Chudnov [ctb],
Hannah De los Santos [ctb],
Lusha Cao [ctb],
Steffani Silva [ctb],
Hanzhe Zhang [ctb],
Matt Boyas [ctb],
David Freedman [ctb],
Andreas Ac [...truncated...]
Maintainer: Carrie Daymont <cdaymont@pennstatehealth.psu.edu>
Diff between growthcleanr versions 2.2.1 dated 2026-02-18 and 2.2.3 dated 2026-05-09
growthcleanr-2.2.1/growthcleanr/inst/extdata/fentlms_foraga.csv.gz |only growthcleanr-2.2.1/growthcleanr/inst/extdata/fentlms_forz.csv.gz |only growthcleanr-2.2.1/growthcleanr/man/fentlms_foraga.Rd |only growthcleanr-2.2.1/growthcleanr/man/fentlms_forz.Rd |only growthcleanr-2.2.3/growthcleanr/DESCRIPTION | 6 - growthcleanr-2.2.3/growthcleanr/MD5 | 18 +-- growthcleanr-2.2.3/growthcleanr/NEWS.md | 13 ++ growthcleanr-2.2.3/growthcleanr/R/extdata.R | 23 ++-- growthcleanr-2.2.3/growthcleanr/R/growth.R | 48 +++++----- growthcleanr-2.2.3/growthcleanr/README.md | 10 -- growthcleanr-2.2.3/growthcleanr/inst/extdata/ref_for_corraga.csv.gz |only growthcleanr-2.2.3/growthcleanr/inst/extdata/ref_for_corrz.csv.gz |only growthcleanr-2.2.3/growthcleanr/man/ref_for_corraga.Rd |only growthcleanr-2.2.3/growthcleanr/man/ref_for_corrz.Rd |only 14 files changed, 65 insertions(+), 53 deletions(-)
Title: Graphical Diagnostics for Pharmacometric Models: Extension to
'nlmixr2'
Description: Extension to 'xpose' to support 'nlmixr2'. Provides functions to import 'nlmixr2' fit data into an 'xpose' data object, allowing the use of 'xpose' for 'nlmixr2' model diagnostics.
Author: Justin Wilkins [aut, cre, cph],
Matthew Fidler [aut, cph],
Benjamin Guiastrennec [aut],
Andrew C. Hooker [aut],
Anna Olofsson [aut, cph],
Sebastian Ueckert [aut],
Ron Keizer [aut],
Kajsa Harling [ctb],
Mike K. Smith [ctb],
Elodie Plan [ctb],
Mats O. [...truncated...]
Maintainer: Justin Wilkins <justin.wilkins@occams.com>
Diff between xpose.nlmixr2 versions 0.4.1 dated 2025-06-27 and 0.4.2 dated 2026-05-09
DESCRIPTION | 11 - MD5 | 17 +- NEWS.md | 8 + R/nlmixr_vpc_theme.R | 44 +++--- R/summarise_nlmixr_model.R | 318 +++++++++++++++++++++++++++++---------------- R/theme_xp_nlmixr.R | 153 +++++++++++---------- R/xpose_data_nlmixr.R | 266 +++++++++++++++++++++++++++---------- man/xpose_data_nlmixr2.Rd | 4 tests |only 9 files changed, 529 insertions(+), 292 deletions(-)
Title: Create Waterfall Charts using 'ggplot2' Simply
Description: A not uncommon task for quants is to create 'waterfall charts'. There seems to be no simple way to do this in 'ggplot2' currently. This package contains a single function (waterfall) that simply draws a waterfall chart in a 'ggplot2' object. Some flexibility is provided, though often the object created will need to be modified through a theme.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage+waterfall@gmail.com>
Diff between waterfalls versions 1.0.0 dated 2022-11-20 and 1.1.4 dated 2026-05-09
DESCRIPTION | 16 +++++++++----- MD5 | 9 ++++---- NAMESPACE | 1 NEWS.md | 10 +++++++++ R/rlang-imports.R |only R/waterfall.R | 60 ++++++++++++++++++++++++++++++++++++++++-------------- 6 files changed, 71 insertions(+), 25 deletions(-)
Title: Parse 'User-Agent' Strings
Description: Despite there being a section in RFC 7231
<https://datatracker.ietf.org/doc/html/rfc7231#section-5.5.3> defining a suggested
structure for 'User-Agent' headers this data is notoriously difficult
to parse consistently. Tools are provided that will take in user agent
strings and return structured R objects. This is a 'V8'-backed package
based on the 'ua-parser' project <https://github.com/ua-parser>.
Author: Bob Rudis [aut, cph],
Greg Hunt [aut, cre, cph],
Lindsey Simon [aut] ,
Tobie Langel [aut] ,
Colman Humphrey [ctb]
Maintainer: Greg Hunt <greg@firmansyah.com>
Diff between uaparserjs versions 0.3.7 dated 2026-04-01 and 0.3.8 dated 2026-05-09
DESCRIPTION | 8 MD5 | 8 NEWS.md | 3 inst/js/bundle.js | 2 inst/tinytest/tests/test_ua.yaml | 420 +++++++++++++++++++++++++++++++++++++++ 5 files changed, 432 insertions(+), 9 deletions(-)
Title: Calculate and Map Distances Between Phylogenetic Trees
Description: Implements measures of tree similarity, including
information-based generalized Robinson-Foulds distances
(Phylogenetic Information Distance, Clustering Information Distance,
Matching Split Information Distance; Smith 2020)
<doi:10.1093/bioinformatics/btaa614>;
Jaccard-Robinson-Foulds distances (Bocker et al. 2013)
<doi:10.1007/978-3-642-40453-5_13>,
including the Nye et al. (2006) metric <doi:10.1093/bioinformatics/bti720>;
the Matching Split Distance (Bogdanowicz & Giaro 2012)
<doi:10.1109/TCBB.2011.48>;
the Hierarchical Mutual Information (Perotti et al. 2015)
<doi:10.1103/PhysRevE.92.062825>;
Maximum Agreement Subtree distances;
the Kendall-Colijn (2016) distance <doi:10.1093/molbev/msw124>, and the
Nearest Neighbour Interchange (NNI) distance, approximated per Li et al.
(1996) <doi:10.1007/3-540-61332-3_168>.
Includes tools for visualizing mappings of tree space (Smith 2022)
<doi:10.1093/sysbio/syab100>,
for identifying islands o [...truncated...]
Author: Martin R. Smith [aut, cre, cph, prg] ,
Roy Jonker [prg, cph] ,
Yong Yang [ctb, cph] ,
Yi Cao [ctb, cph] ,
Neil Kaye [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TreeDist versions 2.12.0 dated 2026-02-13 and 2.14.0 dated 2026-05-09
TreeDist-2.12.0/TreeDist/tests/testthat/test-real-data.R |only TreeDist-2.14.0/TreeDist/DESCRIPTION | 21 TreeDist-2.14.0/TreeDist/MD5 | 384 TreeDist-2.14.0/TreeDist/NAMESPACE | 456 - TreeDist-2.14.0/TreeDist/NEWS.md | 122 TreeDist-2.14.0/TreeDist/R/3Dplot.R | 202 TreeDist-2.14.0/TreeDist/R/HPart.R | 352 TreeDist-2.14.0/TreeDist/R/Information.R | 760 - TreeDist-2.14.0/TreeDist/R/Islands.R | 156 TreeDist-2.14.0/TreeDist/R/MSTSegments.R | 158 TreeDist-2.14.0/TreeDist/R/Plot3.R | 168 TreeDist-2.14.0/TreeDist/R/RcppExports.R | 453 TreeDist-2.14.0/TreeDist/R/Reduce.R | 134 TreeDist-2.14.0/TreeDist/R/TreeDist-package.R | 286 TreeDist-2.14.0/TreeDist/R/VisualizeMatching.R | 450 TreeDist-2.14.0/TreeDist/R/cluster_stats.R | 548 - TreeDist-2.14.0/TreeDist/R/hierarchical_mutual_information.R | 366 TreeDist-2.14.0/TreeDist/R/kmeanspp.R | 208 TreeDist-2.14.0/TreeDist/R/lap.R | 130 TreeDist-2.14.0/TreeDist/R/median.R | 172 TreeDist-2.14.0/TreeDist/R/parallel.R | 198 TreeDist-2.14.0/TreeDist/R/plot.R | 150 TreeDist-2.14.0/TreeDist/R/shiny.R | 258 TreeDist-2.14.0/TreeDist/R/spectral_clustering.R | 162 TreeDist-2.14.0/TreeDist/R/transfer_consensus.R |only TreeDist-2.14.0/TreeDist/R/tree_distance.R | 472 - TreeDist-2.14.0/TreeDist/R/tree_distance_info.R | 804 - TreeDist-2.14.0/TreeDist/R/tree_distance_kendall-colijn.R | 444 TreeDist-2.14.0/TreeDist/R/tree_distance_mast.R | 226 TreeDist-2.14.0/TreeDist/R/tree_distance_msd.R | 126 TreeDist-2.14.0/TreeDist/R/tree_distance_msi.R | 126 TreeDist-2.14.0/TreeDist/R/tree_distance_nni.R | 337 TreeDist-2.14.0/TreeDist/R/tree_distance_nye.R | 416 TreeDist-2.14.0/TreeDist/R/tree_distance_path.R | 216 TreeDist-2.14.0/TreeDist/R/tree_distance_rf.R | 378 TreeDist-2.14.0/TreeDist/R/tree_distance_spr.R | 1007 +- TreeDist-2.14.0/TreeDist/R/tree_distance_transfer.R |only TreeDist-2.14.0/TreeDist/R/tree_distance_utilities.R | 1410 +-- TreeDist-2.14.0/TreeDist/R/tree_information.R | 854 + TreeDist-2.14.0/TreeDist/R/trustworthiness.R | 154 TreeDist-2.14.0/TreeDist/R/zzz.R | 56 TreeDist-2.14.0/TreeDist/build/partial.rdb |binary TreeDist-2.14.0/TreeDist/build/vignette.rds |binary TreeDist-2.14.0/TreeDist/inst/CITATION | 148 TreeDist-2.14.0/TreeDist/inst/REFERENCES.bib | 1477 +-- TreeDist-2.14.0/TreeDist/inst/TreeDist.svg |only TreeDist-2.14.0/TreeDist/inst/WORDLIST | 266 TreeDist-2.14.0/TreeDist/inst/apa-old-doi-prefix.csl | 4541 +++++----- TreeDist-2.14.0/TreeDist/inst/doc/Generalized-RF.Rmd | 586 - TreeDist-2.14.0/TreeDist/inst/doc/Generalized-RF.html | 2 TreeDist-2.14.0/TreeDist/inst/doc/Robinson-Foulds.Rmd | 718 - TreeDist-2.14.0/TreeDist/inst/doc/Robinson-Foulds.html | 22 TreeDist-2.14.0/TreeDist/inst/doc/Using-TreeDist.Rmd | 304 TreeDist-2.14.0/TreeDist/inst/doc/Using-TreeDist.html | 6 TreeDist-2.14.0/TreeDist/inst/doc/compare-treesets.Rmd | 354 TreeDist-2.14.0/TreeDist/inst/doc/compare-treesets.html | 6 TreeDist-2.14.0/TreeDist/inst/doc/different-leaves.Rmd | 194 TreeDist-2.14.0/TreeDist/inst/doc/information.Rmd | 580 - TreeDist-2.14.0/TreeDist/inst/doc/landscapes.Rmd | 256 TreeDist-2.14.0/TreeDist/inst/doc/treespace.Rmd | 942 +- TreeDist-2.14.0/TreeDist/inst/doc/treespace.html | 30 TreeDist-2.14.0/TreeDist/inst/doc/using-distances.R | 10 TreeDist-2.14.0/TreeDist/inst/doc/using-distances.Rmd | 854 - TreeDist-2.14.0/TreeDist/inst/doc/using-distances.html | 10 TreeDist-2.14.0/TreeDist/inst/include |only TreeDist-2.14.0/TreeDist/inst/treespace/app.R | 44 TreeDist-2.14.0/TreeDist/man/AllSplitPairings.Rd | 78 TreeDist-2.14.0/TreeDist/man/CalculateTreeDistance.Rd | 60 TreeDist-2.14.0/TreeDist/man/CompareAll.Rd | 106 TreeDist-2.14.0/TreeDist/man/Entropy.Rd | 66 TreeDist-2.14.0/TreeDist/man/GeneralizedRF.Rd | 128 TreeDist-2.14.0/TreeDist/man/HH.Rd | 24 TreeDist-2.14.0/TreeDist/man/HPart.Rd | 130 TreeDist-2.14.0/TreeDist/man/HierarchicalMutualInfo.Rd | 279 TreeDist-2.14.0/TreeDist/man/HierarchicalMutualInformation.Rd | 24 TreeDist-2.14.0/TreeDist/man/Islands.Rd | 158 TreeDist-2.14.0/TreeDist/man/JaccardRobinsonFoulds.Rd | 291 TreeDist-2.14.0/TreeDist/man/KMeansPP.Rd | 110 TreeDist-2.14.0/TreeDist/man/KendallColijn.Rd | 289 TreeDist-2.14.0/TreeDist/man/LAPJV.Rd | 126 TreeDist-2.14.0/TreeDist/man/MASTSize.Rd | 163 TreeDist-2.14.0/TreeDist/man/MCITree.Rd |only TreeDist-2.14.0/TreeDist/man/MSTSegments.Rd | 170 TreeDist-2.14.0/TreeDist/man/MapTrees.Rd | 250 TreeDist-2.14.0/TreeDist/man/MappingQuality.Rd | 112 TreeDist-2.14.0/TreeDist/man/MatchingSplitDistance.Rd | 207 TreeDist-2.14.0/TreeDist/man/MeilaVariationOfInformation.Rd | 118 TreeDist-2.14.0/TreeDist/man/NNIDist.Rd | 241 TreeDist-2.14.0/TreeDist/man/NormalizeInfo.Rd | 192 TreeDist-2.14.0/TreeDist/man/NyeSimilarity.Rd | 283 TreeDist-2.14.0/TreeDist/man/PathDist.Rd | 175 TreeDist-2.14.0/TreeDist/man/ReduceTrees.Rd | 102 TreeDist-2.14.0/TreeDist/man/ReportMatching.Rd | 54 TreeDist-2.14.0/TreeDist/man/Robinson-Foulds.Rd | 327 TreeDist-2.14.0/TreeDist/man/SPRDist.Rd | 187 TreeDist-2.14.0/TreeDist/man/SpectralEigens.Rd | 102 TreeDist-2.14.0/TreeDist/man/SplitEntropy.Rd | 102 TreeDist-2.14.0/TreeDist/man/SplitSharedInformation.Rd | 196 TreeDist-2.14.0/TreeDist/man/StartParallel.Rd | 168 TreeDist-2.14.0/TreeDist/man/TransferConsensus.Rd |only TreeDist-2.14.0/TreeDist/man/TransferDist.Rd |only TreeDist-2.14.0/TreeDist/man/TreeDist-package.Rd | 296 TreeDist-2.14.0/TreeDist/man/TreeDistance.Rd | 660 - TreeDist-2.14.0/TreeDist/man/TreeInfo.Rd | 432 TreeDist-2.14.0/TreeDist/man/VisualizeMatching.Rd | 178 TreeDist-2.14.0/TreeDist/man/clone.Rd | 66 TreeDist-2.14.0/TreeDist/man/cluster-statistics.Rd | 212 TreeDist-2.14.0/TreeDist/man/cpp_mutual_clustering_all_pairs.Rd |only TreeDist-2.14.0/TreeDist/man/cpp_transfer_consensus.Rd |only TreeDist-2.14.0/TreeDist/man/cpp_transfer_dist.Rd |only TreeDist-2.14.0/TreeDist/man/cpp_transfer_dist_all_pairs.Rd |only TreeDist-2.14.0/TreeDist/man/cpp_transfer_dist_cross_pairs.Rd |only TreeDist-2.14.0/TreeDist/man/dot-SPRPairDeO.Rd |only TreeDist-2.14.0/TreeDist/man/dot-ThreeDPlotServer.Rd | 50 TreeDist-2.14.0/TreeDist/man/dot-TreeDistance.Rd | 46 TreeDist-2.14.0/TreeDist/man/entropy_int.Rd | 40 TreeDist-2.14.0/TreeDist/man/median.multiPhylo.Rd | 188 TreeDist-2.14.0/TreeDist/src/Makevars |only TreeDist-2.14.0/TreeDist/src/Makevars.win |only TreeDist-2.14.0/TreeDist/src/RcppExports.cpp | 395 TreeDist-2.14.0/TreeDist/src/day_1985.cpp | 153 TreeDist-2.14.0/TreeDist/src/hmi.cpp | 28 TreeDist-2.14.0/TreeDist/src/hpart.cpp | 7 TreeDist-2.14.0/TreeDist/src/hpart_relabel.cpp | 2 TreeDist-2.14.0/TreeDist/src/information.h | 28 TreeDist-2.14.0/TreeDist/src/ints.h | 10 TreeDist-2.14.0/TreeDist/src/kc_distance.cpp |only TreeDist-2.14.0/TreeDist/src/lap.cpp | 133 TreeDist-2.14.0/TreeDist/src/lap.h |only TreeDist-2.14.0/TreeDist/src/mast.cpp | 9 TreeDist-2.14.0/TreeDist/src/nni_distance.cpp | 24 TreeDist-2.14.0/TreeDist/src/pairwise_distances.cpp |only TreeDist-2.14.0/TreeDist/src/path_vector.cpp | 54 TreeDist-2.14.0/TreeDist/src/spr.cpp | 39 TreeDist-2.14.0/TreeDist/src/spr_lookup.cpp | 19 TreeDist-2.14.0/TreeDist/src/transfer_consensus.cpp |only TreeDist-2.14.0/TreeDist/src/transfer_distance.cpp |only TreeDist-2.14.0/TreeDist/src/tree_distance_functions.cpp | 66 TreeDist-2.14.0/TreeDist/src/tree_distances.cpp | 482 - TreeDist-2.14.0/TreeDist/src/tree_distances.h | 594 - TreeDist-2.14.0/TreeDist/tests/benchmark/benchmark.R | 36 TreeDist-2.14.0/TreeDist/tests/testthat.R | 8 TreeDist-2.14.0/TreeDist/tests/testthat/_snaps/HPart/plot-hpart.svg | 96 TreeDist-2.14.0/TreeDist/tests/testthat/_snaps/MSTSegments/mst-example-plot.svg | 622 - TreeDist-2.14.0/TreeDist/tests/testthat/_snaps/Plot3/plotting-order.svg | 134 TreeDist-2.14.0/TreeDist/tests/testthat/_snaps/Plot3/simple-plot.svg | 134 TreeDist-2.14.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/hidden-edge-labels.svg | 500 - TreeDist-2.14.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/jrf-vm-matchzeros-false.svg | 348 TreeDist-2.14.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/rf-collapse-a-node.svg | 566 - TreeDist-2.14.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/rf-collapse-and-change.svg | 554 - TreeDist-2.14.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/rf-vm-single-splits-plainedges.svg | 352 TreeDist-2.14.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/test-vm.svg | 396 TreeDist-2.14.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/test-vmr.svg | 368 TreeDist-2.14.0/TreeDist/tests/testthat/_snaps/VisualizeMatching/visualize-mci-matching.svg | 566 - 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TreeDist-2.14.0/TreeDist/tests/testthat/test-tree_information.R | 316 TreeDist-2.14.0/TreeDist/vignettes/Generalized-RF.Rmd | 586 - TreeDist-2.14.0/TreeDist/vignettes/Robinson-Foulds.Rmd | 718 - TreeDist-2.14.0/TreeDist/vignettes/Using-TreeDist.Rmd | 304 TreeDist-2.14.0/TreeDist/vignettes/compare-treesets.Rmd | 354 TreeDist-2.14.0/TreeDist/vignettes/different-leaves.Rmd | 194 TreeDist-2.14.0/TreeDist/vignettes/figures |only TreeDist-2.14.0/TreeDist/vignettes/information.Rmd | 580 - TreeDist-2.14.0/TreeDist/vignettes/landscapes.Rmd | 256 TreeDist-2.14.0/TreeDist/vignettes/treespace.Rmd | 942 +- TreeDist-2.14.0/TreeDist/vignettes/using-distances.Rmd | 854 - 205 files changed, 26697 insertions(+), 25428 deletions(-)
Title: Transformation Models
Description: Formula-based user-interfaces to specific transformation models
implemented in package 'mlt' (<DOI:10.32614/CRAN.package.mlt>, <DOI:10.32614/CRAN.package.mlt.docreg>).
Available models include Cox models, some parametric
survival models (Weibull, etc.), models for ordered categorical variables,
normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression
(Lohse et al., 2017, <DOI:10.12688/f1000research.12934.1>). The underlying theory
is described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>. An extension to
transformation models for clustered data is provided (Barbanti and Hothorn, 2022,
<DOI:10.1093/biostatistics/kxac048>) and a tutorial explains applications in survival analysis
(Siegfried et al., 2025, <DOI:10.48550/arXiv.2402.06428>). Multivariate conditional transformation models
(Klein et al, 2022, <DOI:10.1111/sjos.12501>) and shift-scale transformation models (Siegfried et al, 2023,
<DOI:10.108 [...truncated...]
Author: Torsten Hothorn [aut, cre] ,
Luisa Barbanti [ctb] ,
Sandra Siegfried [aut] ,
Lucas Kook [aut] ,
Susanne Dandl [ctb] ,
Brian Ripley [ctb],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Nadja Klein [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between tram versions 1.4-1 dated 2026-03-08 and 1.4-2 dated 2026-05-09
DESCRIPTION | 13 MD5 | 64 - NAMESPACE | 3 R/methods.R | 1 R/mmlt.R | 73 + build/partial.rdb |binary demo/NAMI.Rout.save | 109 +- demo/hcc.R | 1055 +++++++++++++++++++ demo/hcc.Rout.save | 1459 +++++++++++++++++++++------ demo/mtram.Rout.save | 70 - demo/npb.R | 1775 +++++++++++++++++++++++++++++++++ demo/npb.Rout.save | 2225 ++++++++++++++++++++++++++++++------------ demo/npn.R | 303 +++++ demo/npn.Rout.save | 311 +++++ demo/survtram.Rout.save | 267 +---- demo/undernutrition.Rout.save | 33 inst/NEWS.Rd | 8 inst/REFERENCES.bib | 13 inst/doc/NAMI.pdf |binary inst/doc/mtram.R | 724 +++++++++++++ inst/doc/mtram.pdf |binary inst/doc/survtram.pdf |binary inst/doc/tram.pdf |binary inst/npnsimulations |only man/perm_test.Rd | 28 tests/bugfixes.R | 11 tests/stram-Ex.Rout.save | 7 27 files changed, 7314 insertions(+), 1238 deletions(-)
Title: Extension to 'tmap' for Creating Network Visualizations
Description: Provides functions for visualizing networks with 'tmap'. It supports 'sfnetworks' objects natively but is not limited to them. Useful for adding network layers such as edges and nodes to 'tmap' maps. More features may be added in future versions.
Author: Martijn Tennekes [aut, cre],
Andrea Gilardi [aut] ,
Robin Lovelace [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap.networks versions 0.1 dated 2025-05-30 and 0.2 dated 2026-05-09
DESCRIPTION | 10 - MD5 | 34 +++-- NAMESPACE | 16 ++ NEWS | 243 +------------------------------------ R/onLoad.R | 16 +- R/sublines.R |only R/tm_layers_edges.R | 10 + R/tm_layers_nodes.R | 5 R/tmapGridDataPlot.R |only R/tmapLeafletDataPlot.R |only R/tmapMapboxDataPlot.R |only R/tmapMaplibreDataPlot.R |only R/tmapShape_linnet.R |only R/tmapShape_sfnetworks.R | 12 + man/internal_network.Rd |only man/tm_edges.Rd | 13 + man/tm_network.Rd | 5 man/tm_nodes.Rd | 10 + man/tmapGetShapeMeta1.linnet.Rd |only man/tmapGetShapeMeta1.sfnetwork.Rd | 2 man/tmapGetShapeMeta2.linnet.Rd |only man/tmapShape.sfnetwork.Rd | 14 +- man/tmapSubsetShp.linnet.Rd |only 23 files changed, 119 insertions(+), 271 deletions(-)
Title: Extensions to 'tmap' with Two New Modes: 'mapbox' and 'maplibre'
Description: The 'tmap' package provides two plotting modes for static and interactive thematic maps. This package extends 'tmap' with two additional modes based on 'Mapbox GL JS' and 'MapLibre GL JS'. These modes feature interactive vector tiles, globe views, and other modern web-mapping capabilities, while maintaining a consistent 'tmap' interface across all plotting modes.
Author: Martijn Tennekes [aut, cre]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap.mapgl versions 0.1.0 dated 2025-09-22 and 0.2-1 dated 2026-05-09
tmap.mapgl-0.1.0/tmap.mapgl/R/mapgl_components.R |only tmap.mapgl-0.2-1/tmap.mapgl/DESCRIPTION | 10 tmap.mapgl-0.2-1/tmap.mapgl/MD5 | 47 tmap.mapgl-0.2-1/tmap.mapgl/NAMESPACE | 18 tmap.mapgl-0.2-1/tmap.mapgl/NEWS | 15 tmap.mapgl-0.2-1/tmap.mapgl/R/from_tmap.R | 227 ++++ tmap.mapgl-0.2-1/tmap.mapgl/R/global-variables.R |only tmap.mapgl-0.2-1/tmap.mapgl/R/mapgl_comp_leg.R | 3 tmap.mapgl-0.2-1/tmap.mapgl/R/mapgl_draw.R |only tmap.mapgl-0.2-1/tmap.mapgl/R/mapgl_geocoder.R |only tmap.mapgl-0.2-1/tmap.mapgl/R/mapgl_init.R | 1 tmap.mapgl-0.2-1/tmap.mapgl/R/mapgl_layers.R | 959 +++++++++++++----- tmap.mapgl-0.2-1/tmap.mapgl/R/mapgl_legend.R | 85 + tmap.mapgl-0.2-1/tmap.mapgl/R/mapgl_misc.R | 23 tmap.mapgl-0.2-1/tmap.mapgl/R/mapgl_run.R | 65 + tmap.mapgl-0.2-1/tmap.mapgl/R/mapgl_shape.R | 2 tmap.mapgl-0.2-1/tmap.mapgl/R/onload.R | 22 tmap.mapgl-0.2-1/tmap.mapgl/R/tm_fullscreen.R |only tmap.mapgl-0.2-1/tmap.mapgl/R/tm_mapbox.R | 10 tmap.mapgl-0.2-1/tmap.mapgl/R/tmapMapboxDataPlot.R | 32 tmap.mapgl-0.2-1/tmap.mapgl/R/tmapMaplibreDataPlot.R | 32 tmap.mapgl-0.2-1/tmap.mapgl/man/tm_draw.Rd |only tmap.mapgl-0.2-1/tmap.mapgl/man/tm_fullscreen.Rd |only tmap.mapgl-0.2-1/tmap.mapgl/man/tm_geocoder.Rd | 10 tmap.mapgl-0.2-1/tmap.mapgl/man/tm_mapbox.Rd | 10 tmap.mapgl-0.2-1/tmap.mapgl/man/tm_maplibre.Rd | 8 tmap.mapgl-0.2-1/tmap.mapgl/man/tmap.mapgl-package.Rd | 2 tmap.mapgl-0.2-1/tmap.mapgl/man/tmapMapbox.Rd | 79 + 28 files changed, 1318 insertions(+), 342 deletions(-)
Title: Extension to 'tmap' for Creating Glyphs
Description: Provides new layer functions to 'tmap' for drawing glyphs. A glyph is a small chart (e.g., donut chart) shown at specific map locations to visualize multivariate or time-series data. The functions work with the syntax of 'tmap' and allow flexible control over size, layout, and appearance.
Author: Martijn Tennekes [aut, cre]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap.glyphs versions 0.1 dated 2025-05-30 and 0.1-1 dated 2026-05-09
tmap.glyphs-0.1-1/tmap.glyphs/DESCRIPTION | 10 +-- tmap.glyphs-0.1-1/tmap.glyphs/MD5 | 27 ++++---- tmap.glyphs-0.1-1/tmap.glyphs/NAMESPACE | 11 ++- tmap.glyphs-0.1-1/tmap.glyphs/NEWS | 7 +- tmap.glyphs-0.1-1/tmap.glyphs/R/grob_functions.R | 2 tmap.glyphs-0.1-1/tmap.glyphs/R/onload.R | 19 +----- tmap.glyphs-0.1-1/tmap.glyphs/R/tm_layer_donuts.R | 44 ++++++++++++-- tmap.glyphs-0.1-1/tmap.glyphs/R/tm_layer_flowers.R | 6 + tmap.glyphs-0.1-1/tmap.glyphs/R/tmapGridDonuts.R | 39 +++++------- tmap.glyphs-0.1-1/tmap.glyphs/R/tmapGridFlowers.R | 30 +++++---- tmap.glyphs-0.1-1/tmap.glyphs/man/internals_glyphs.Rd |only tmap.glyphs-0.1-1/tmap.glyphs/man/tm_donuts.Rd | 44 ++++++++++++-- tmap.glyphs-0.1-1/tmap.glyphs/man/tm_flowers.Rd | 3 tmap.glyphs-0.1-1/tmap.glyphs/man/tmapScaleComposition.Rd | 3 tmap.glyphs-0.1/tmap.glyphs/man/tmapGridDonuts.Rd |only tmap.glyphs-0.1/tmap.glyphs/man/tmapGridFlowers.Rd |only 16 files changed, 158 insertions(+), 87 deletions(-)
Title: Extension to 'tmap' for Creating Cartograms
Description: Provides new layer functions to 'tmap' for creating various types of cartograms. A cartogram is a type of thematic map in which geographic areas are resized or distorted based on a quantitative variable, such as population. The goal is to make the area sizes proportional to the selected variable while preserving geographic positions as much as possible.
Author: Martijn Tennekes [aut, cre],
Sebastian Jeworutzki [ctb]
Maintainer: Martijn Tennekes <mtennekes@gmail.com>
Diff between tmap.cartogram versions 0.2 dated 2025-05-14 and 0.2-1 dated 2026-05-09
DESCRIPTION | 10 +++++----- MD5 | 17 +++++++++++------ NAMESPACE | 12 ++++++++++++ NEWS | 3 +++ R/onload.R | 3 +++ R/tm_layers_cartogram.R | 9 +++++++-- R/tmapGridDataPlot.R |only R/tmapLeafletDataPlot.R |only R/tmapMapboxDataPlot.R |only R/tmapMaplibreDataPlot.R |only R/tmapTransCartogram.R | 3 +++ man/internal_cartogram.Rd |only 12 files changed, 44 insertions(+), 13 deletions(-)
More information about tmap.cartogram at CRAN
Permanent link
Title: Multidimensional Penalized Splines for (Excess) Hazard Models,
Relative Mortality Ratio Models and Marginal Intensity Models
Description: Fits (excess) hazard, relative mortality ratio or marginal intensity models with multidimensional penalized splines allowing for
time-dependent effects, non-linear effects and interactions between several continuous covariates. In survival and net survival analysis, in addition to modelling the effect of time (via the baseline hazard), one has often to deal with several continuous covariates and model their functional forms, their time-dependent effects, and their interactions. Model specification becomes therefore a complex problem and penalized regression splines represent an appealing solution to that problem as splines offer the required flexibility while penalization limits overfitting issues. Current implementations of penalized survival models can be slow or unstable and sometimes lack some key features like taking into account expected mortality to provide net survival and excess hazard estimates. In contrast, survPen provides an automated, fast, and stable implementation (than [...truncated...]
Author: Mathieu Fauvernier [aut, cre],
Laurent Roche [aut],
Laurent Remontet [aut],
Zoe Uhry [ctb],
Nadine Bossard [ctb],
Elsa Coz [ctb]
Maintainer: Mathieu Fauvernier <mathieu.fauvernier@gmail.com>
Diff between survPen versions 2.0.3 dated 2026-03-20 and 2.0.4 dated 2026-05-09
survPen-2.0.3/survPen/R/survPenV2_03.r |only survPen-2.0.4/survPen/DESCRIPTION | 9 survPen-2.0.4/survPen/MD5 | 88 survPen-2.0.4/survPen/NEWS | 14 survPen-2.0.4/survPen/R/survPenV2_04.r |only survPen-2.0.4/survPen/build/vignette.rds |binary survPen-2.0.4/survPen/inst/doc/survival_analysis_with_survPen.R | 78 survPen-2.0.4/survPen/inst/doc/survival_analysis_with_survPen.Rmd | 440 - survPen-2.0.4/survPen/inst/doc/survival_analysis_with_survPen.html | 3839 +++++----- survPen-2.0.4/survPen/man/HeartFailure.Rd | 2 survPen-2.0.4/survPen/man/NR.beta.Rd | 2 survPen-2.0.4/survPen/man/NR.rho.Rd | 2 survPen-2.0.4/survPen/man/constraint.Rd | 2 survPen-2.0.4/survPen/man/cor.var.Rd | 2 survPen-2.0.4/survPen/man/crs.FP.Rd | 2 survPen-2.0.4/survPen/man/crs.Rd | 2 survPen-2.0.4/survPen/man/datCancer.Rd | 2 survPen-2.0.4/survPen/man/design.matrix.Rd | 2 survPen-2.0.4/survPen/man/expected.table.Rd | 2 survPen-2.0.4/survPen/man/instr.Rd | 2 survPen-2.0.4/survPen/man/inv.repam.Rd | 2 survPen-2.0.4/survPen/man/list.wicss.Rd | 2 survPen-2.0.4/survPen/man/model.cons.Rd | 2 survPen-2.0.4/survPen/man/predSNS.Rd | 2 survPen-2.0.4/survPen/man/predict.survPen.Rd | 2 survPen-2.0.4/survPen/man/print.summary.survPen.Rd | 2 survPen-2.0.4/survPen/man/pwcst.Rd | 2 survPen-2.0.4/survPen/man/rd.Rd | 2 survPen-2.0.4/survPen/man/repam.Rd | 2 survPen-2.0.4/survPen/man/robust.var.Rd | 6 survPen-2.0.4/survPen/man/smf.Rd | 2 survPen-2.0.4/survPen/man/smooth.cons.Rd | 2 survPen-2.0.4/survPen/man/smooth.cons.integral.Rd | 2 survPen-2.0.4/survPen/man/smooth.spec.Rd | 2 survPen-2.0.4/survPen/man/splitmult.Rd | 2 survPen-2.0.4/survPen/man/summary.survPen.Rd | 2 survPen-2.0.4/survPen/man/survPen.Rd | 5 survPen-2.0.4/survPen/man/survPen.fit.Rd | 2 survPen-2.0.4/survPen/man/survPenObject.Rd | 5 survPen-2.0.4/survPen/man/tensor.in.Rd | 2 survPen-2.0.4/survPen/man/tensor.prod.S.Rd | 2 survPen-2.0.4/survPen/man/tensor.prod.X.Rd | 2 survPen-2.0.4/survPen/vignettes/survival_analysis_with_survPen.Rmd | 440 - survPen-2.0.4/survPen/vignettes/survival_analysis_with_survPen_files/figure-html/unnamed-chunk-51-1.png |binary survPen-2.0.4/survPen/vignettes/survival_analysis_with_survPen_files/figure-html/unnamed-chunk-55-1.png |only survPen-2.0.4/survPen/vignettes/survival_analysis_with_survPen_files/figure-html/unnamed-chunk-56-1.png |only survPen-2.0.4/survPen/vignettes/survival_analysis_with_survPen_files/figure-html/unnamed-chunk-8-1.png |binary 47 files changed, 2969 insertions(+), 2015 deletions(-)
Title: Classes and Methods for Simple Feature Objects that Have a Time
Column
Description: Classes and methods for spatial objects that have a registered time
column, in particular for irregular spatiotemporal data. The time column can
be of any type, but needs to be ordinal. Regularly laid out spatiotemporal
data (vector or raster data cubes) are handled by package 'stars'.
Author: Henning Teickner [aut, cre, cph] ,
Edzer Pebesma [aut, cph] ,
Benedikt Graeler [aut, cph]
Maintainer: Henning Teickner <henning.teickner@uni-muenster.de>
Diff between sftime versions 0.3.1 dated 2025-08-19 and 0.3.2 dated 2026-05-09
DESCRIPTION | 15 +-- MD5 | 28 +++--- NEWS.md | 4 R/bind.R | 4 R/st_cast.R | 8 - R/tidyverse.R | 76 ++++++++-------- build/vignette.rds |binary inst/doc/sftime.R | 15 +-- inst/doc/sftime.Rmd | 13 +- inst/doc/sftime.html | 217 +++++++++++++++++++++++------------------------- man/bind.Rd | 4 man/st_cast.Rd | 6 - man/tidyverse.Rd | 100 +++++++++------------- man/transform.sftime.Rd | 2 vignettes/sftime.Rmd | 13 +- 15 files changed, 243 insertions(+), 262 deletions(-)
Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in
tabular data such as primary and secondary cell suppression as described for example
in Hundepol et al. (2012) <doi:10.1002/9781118348239> are covered in this package.
Author: Bernhard Meindl [aut, cre]
Maintainer: Bernhard Meindl <bernhard.meindl@gmail.com>
Diff between sdcTable versions 0.33.0 dated 2025-06-26 and 0.34.0 dated 2026-05-09
sdcTable-0.33.0/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_ed04826a45385829443b395284217f1d.RData |only sdcTable-0.33.0/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_ed04826a45385829443b395284217f1d.rdb |only sdcTable-0.33.0/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_ed04826a45385829443b395284217f1d.rdx |only sdcTable-0.34.0/sdcTable/DESCRIPTION | 16 sdcTable-0.34.0/sdcTable/MD5 | 86 - sdcTable-0.34.0/sdcTable/R/attack.R | 245 ++-- sdcTable-0.34.0/sdcTable/R/contributing_indices.R | 154 +- sdcTable-0.34.0/sdcTable/R/helper_functions.r | 274 +--- sdcTable-0.34.0/sdcTable/R/makeProblem.R | 27 sdcTable-0.34.0/sdcTable/R/primarySuppression.R | 151 -- sdcTable-0.34.0/sdcTable/R/protectTable.R | 12 sdcTable-0.34.0/sdcTable/R/setInfo.R | 1 sdcTable-0.34.0/sdcTable/R/utils.R | 113 + sdcTable-0.34.0/sdcTable/R/utils_simpleheuristic.R | 14 sdcTable-0.34.0/sdcTable/R/zzz.r | 1 sdcTable-0.34.0/sdcTable/build/vignette.rds |binary sdcTable-0.34.0/sdcTable/inst/doc/sdcTable.html | 191 +-- sdcTable-0.34.0/sdcTable/inst/doc/sdcTable.rmd | 588 +++++++--- sdcTable-0.34.0/sdcTable/man/attack.Rd | 35 sdcTable-0.34.0/sdcTable/man/cell_info.Rd | 4 sdcTable-0.34.0/sdcTable/man/change_cellstatus.Rd | 6 sdcTable-0.34.0/sdcTable/man/contributing_indices.Rd | 41 sdcTable-0.34.0/sdcTable/man/createArgusInput.Rd | 4 sdcTable-0.34.0/sdcTable/man/createJJFormat.Rd | 4 sdcTable-0.34.0/sdcTable/man/createRegSDCInput.Rd | 4 sdcTable-0.34.0/sdcTable/man/get_safeobj.Rd | 4 sdcTable-0.34.0/sdcTable/man/makeProblem.Rd | 37 sdcTable-0.34.0/sdcTable/man/primarySuppression.Rd | 134 +- sdcTable-0.34.0/sdcTable/man/protectTable.Rd | 47 sdcTable-0.34.0/sdcTable/man/protect_linked_tables.Rd | 4 sdcTable-0.34.0/sdcTable/man/sdcProb2df.Rd | 4 sdcTable-0.34.0/sdcTable/man/setInfo.Rd | 30 sdcTable-0.34.0/sdcTable/man/writeJJFormat.Rd | 2 sdcTable-0.34.0/sdcTable/tests/testthat/_snaps |only sdcTable-0.34.0/sdcTable/tests/testthat/test-cell_info.R | 4 sdcTable-0.34.0/sdcTable/tests/testthat/test-contributing_indices.r | 5 sdcTable-0.34.0/sdcTable/tests/testthat/test-jjformat.r | 10 sdcTable-0.34.0/sdcTable/tests/testthat/test-linked-tables.r | 2 sdcTable-0.34.0/sdcTable/tests/testthat/test-makeProblem.r | 4 sdcTable-0.34.0/sdcTable/tests/testthat/test-primarySuppression.r | 11 sdcTable-0.34.0/sdcTable/tests/testthat/test-protectTable.r | 14 sdcTable-0.34.0/sdcTable/tests/testthat/test-samplingweights.r | 8 sdcTable-0.34.0/sdcTable/tests/testthat/test-simpleheuristic.R | 6 sdcTable-0.34.0/sdcTable/vignettes/sdcTable.rmd | 588 +++++++--- sdcTable-0.34.0/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_c600c38d4fcf886edc2534b1e1c0f409.RData |only sdcTable-0.34.0/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_c600c38d4fcf886edc2534b1e1c0f409.rdb |only sdcTable-0.34.0/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_c600c38d4fcf886edc2534b1e1c0f409.rdx |only 47 files changed, 1823 insertions(+), 1062 deletions(-)
Title: Tools for Tensor Analysis and Decomposition
Description: A set of tools for creation, manipulation, and modeling
of tensors with arbitrary number of modes. A tensor in the context of data
analysis is a multidimensional array. rTensor does this by providing a S4
class 'Tensor' that wraps around the base 'array' class. rTensor
provides common tensor operations as methods, including matrix unfolding,
summing/averaging across modes, calculating the Frobenius norm, and taking
the inner product between two tensors. Familiar array operations are
overloaded, such as index subsetting via '[' and element-wise operations.
rTensor also implements various tensor decomposition, including CP, GLRAM,
MPCA, PVD, Tucker, INDSCAL, RESCAL, DEDICOM, PARAFAC2, and 2DLDA. For
tensors with 3 modes, rTensor also implements
transpose, t-product, and t-SVD, as defined in Kilmer et al. (2013). Some
auxiliary functions include the Khatri-Rao product, Kronecker product, and
the Hadamard product for a list of matrices.
Author: James Li [aut],
Jacob Bien [aut],
Martin Wells [aut],
Koki Tsuyuzaki [cre, ctb]
Maintainer: Koki Tsuyuzaki <k.t.the-answer@hotmail.co.jp>
Diff between rTensor versions 1.4.9 dated 2025-08-25 and 1.5.0 dated 2026-05-09
DESCRIPTION | 16 - MD5 | 17 + NAMESPACE | 5 R/rTensor_Decomp.R | 674 +++++++++++++++++++++++++++++++++++++++++++++++++++++ man/dedicom.Rd |only man/indscal.Rd |only man/parafac2.Rd |only man/rescal.Rd |only man/twodlda.Rd |only tests |only 10 files changed, 703 insertions(+), 9 deletions(-)
Title: Core Utilities for the 'rtemis' Ecosystem
Description: Utilities used across packages of the 'rtemis' ecosystem. Includes the msg()
messaging system and the fmt() formatting system. Provides a library of 'S7' properties,
test_* functions that return logical values, check_* functions that throw informative errors,
and clean_* functions that return validated and coerced values. This code began as part of the
'rtemis' package (<doi:10.32614/CRAN.package.rtemis>).
Author: E.D. Gennatas [aut, cre, cph]
Maintainer: E.D. Gennatas <gennatas@gmail.com>
Diff between rtemis.core versions 0.0.3 dated 2026-04-21 and 0.1.0 dated 2026-05-09
rtemis.core-0.0.3/rtemis.core/R/0_S7_init.R |only rtemis.core-0.0.3/rtemis.core/R/types.R |only rtemis.core-0.1.0/rtemis.core/DESCRIPTION | 18 rtemis.core-0.1.0/rtemis.core/MD5 | 94 - rtemis.core-0.1.0/rtemis.core/NAMESPACE | 56 rtemis.core-0.1.0/rtemis.core/NEWS.md |only rtemis.core-0.1.0/rtemis.core/R/00_S7_properties.R |only rtemis.core-0.1.0/rtemis.core/R/01_S7_generics.R |only rtemis.core-0.1.0/rtemis.core/R/check.R | 836 +++++++++- rtemis.core-0.1.0/rtemis.core/R/clean.R | 35 rtemis.core-0.1.0/rtemis.core/R/rtemis_color_system.R | 1 rtemis.core-0.1.0/rtemis.core/R/utils_print.R | 21 rtemis.core-0.1.0/rtemis.core/README.md | 7 rtemis.core-0.1.0/rtemis.core/man/bounded_double_property.Rd |only rtemis.core-0.1.0/rtemis.core/man/character_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_character_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_double_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_integer_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_logical_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_nonneg_double_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_nonneg_double_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_optional_character_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_optional_double_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_optional_integer_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_optional_logical_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_optional_nonneg_double_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_optional_nonneg_double_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_optional_pos_double_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_optional_pos_double_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_optional_pos_integer_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_optional_prob_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_optional_prob_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_optional_scalar_character.Rd | 6 rtemis.core-0.1.0/rtemis.core/man/check_optional_unit_open_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_pos_double_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_pos_double_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_pos_integer_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_prob_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_prob_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_scalar_character.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_scalar_logical.Rd | 6 rtemis.core-0.1.0/rtemis.core/man/check_unit_open_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/check_unit_open_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/clean_int.Rd | 6 rtemis.core-0.1.0/rtemis.core/man/clean_posint.Rd | 4 rtemis.core-0.1.0/rtemis.core/man/double_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/enum.Rd |only rtemis.core-0.1.0/rtemis.core/man/integer_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/logical_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/nonneg_double_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/nonneg_double_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/nonneg_integer_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/optional.Rd | 7 rtemis.core-0.1.0/rtemis.core/man/optional_character_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/optional_double_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/optional_integer_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/optional_logical_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/optional_nonneg_double_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/optional_nonneg_double_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/optional_nonneg_integer_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/optional_pos_double_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/optional_pos_double_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/optional_pos_integer_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/optional_prob_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/optional_prob_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/optional_unit_open_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/optional_unit_open_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/pos_double_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/pos_double_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/pos_integer_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/prob_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/prob_vector.Rd |only rtemis.core-0.1.0/rtemis.core/man/repr.Rd | 2 rtemis.core-0.1.0/rtemis.core/man/rtemis.core-package.Rd | 5 rtemis.core-0.1.0/rtemis.core/man/rtemis_colors.Rd | 5 rtemis.core-0.1.0/rtemis.core/man/unit_open_scalar.Rd |only rtemis.core-0.1.0/rtemis.core/man/unit_open_vector.Rd |only rtemis.core-0.1.0/rtemis.core/tests/testthat/test-00_S7_properties.R |only rtemis.core-0.1.0/rtemis.core/tests/testthat/test-check.R | 400 ++++ 79 files changed, 1413 insertions(+), 96 deletions(-)
Title: Client for 'mapshaper' for 'Geospatial' Operations
Description: Edit and simplify 'geojson', 'Spatial', and 'sf'
objects. This is wrapper around the 'mapshaper' 'JavaScript' library
by Matthew Bloch <https://github.com/mbloch/mapshaper/> to perform
topologically-aware polygon simplification, as well as other
operations such as clipping, erasing, dissolving, and converting
'multi-part' to 'single-part' geometries.
Author: Andy Teucher [aut, cre] ,
Kenton Russell [aut] ,
Matthew Bloch [cph]
Maintainer: Andy Teucher <andy.teucher@gmail.com>
Diff between rmapshaper versions 0.6.0 dated 2025-12-04 and 0.6.1 dated 2026-05-09
DESCRIPTION | 9 +++++---- MD5 | 38 +++++++++++++++++++------------------- NEWS.md | 4 ++++ README.md | 5 ++--- build/vignette.rds |binary inst/doc/rmapshaper.R | 2 +- inst/doc/rmapshaper.Rmd | 2 +- inst/doc/rmapshaper.html | 6 +++--- man/ms_clip.Rd | 2 +- man/ms_dissolve.Rd | 2 +- man/ms_erase.Rd | 2 +- man/ms_explode.Rd | 2 +- man/ms_filter_fields.Rd | 2 +- man/ms_filter_islands.Rd | 2 +- man/ms_innerlines.Rd | 2 +- man/ms_lines.Rd | 2 +- man/ms_points.Rd | 2 +- man/ms_simplify.Rd | 2 +- man/rmapshaper-package.Rd | 1 + vignettes/rmapshaper.Rmd | 2 +- 20 files changed, 47 insertions(+), 42 deletions(-)
Title: Read and Write 'las' and 'laz' Binary File Formats Used for
Remote Sensing Data
Description: Read and write 'las' and 'laz' binary file formats. The LAS file format is a public file format for the interchange of 3-dimensional point cloud data between data users. The LAS specifications are approved by the American Society for Photogrammetry and Remote Sensing <https://community.asprs.org/leadership-restricted/leadership-content/public-documents/standards>. The LAZ file format is an open and lossless compression scheme for binary LAS format versions 1.0 to 1.4 <https://laszip.org/>.
Author: Jean-Romain Roussel [aut, cre, cph],
Florian De Boissieu [aut, ctb] ,
Martin Isenburg [cph] ,
David Auty [ctb] ,
Pierrick Marie [ctb] ,
Tiago de Conto [ctb]
Maintainer: Jean-Romain Roussel <info@r-lidar.com>
Diff between rlas versions 1.8.6 dated 2026-04-03 and 1.9.0 dated 2026-05-09
rlas-1.8.6/rlas/src/Makevars |only rlas-1.8.6/rlas/src/Makevars.win |only rlas-1.9.0/rlas/DESCRIPTION | 8 +- rlas-1.9.0/rlas/MD5 | 25 +++++--- rlas-1.9.0/rlas/NEWS.md | 4 + rlas-1.9.0/rlas/R/readLAS.r | 41 ++++++++++---- rlas-1.9.0/rlas/cleanup |only rlas-1.9.0/rlas/configure |only rlas-1.9.0/rlas/configure.ac |only rlas-1.9.0/rlas/inst/tinytest/test-remote.R |only rlas-1.9.0/rlas/src/LASlib/lasfilter.cpp | 9 +++ rlas-1.9.0/rlas/src/LASlib/lasreader.cpp | 5 + rlas-1.9.0/rlas/src/LASlib/lasreader_las.cpp | 65 +++++++++++++++++++++++ rlas-1.9.0/rlas/src/LASzip/bytestreamin_gdal.hpp |only rlas-1.9.0/rlas/src/LASzip/mydefs.hpp | 33 +++++++++++ rlas-1.9.0/rlas/src/Makevars.in |only rlas-1.9.0/rlas/src/Makevars.ucrt |only rlas-1.9.0/rlas/src/rlasstreamer.cpp | 11 +++ 18 files changed, 175 insertions(+), 26 deletions(-)
Title: Computes Statistics for Relational Event History Data
Description: Computes a variety of statistics for relational event models (Meijerink et al., 2023, <doi:10.3758/s13428-022-01821-8>). Relational event models enable researchers to investigate exogenous and endogenous factors, and interactions, influencing the evolution of a time-ordered sequence of events. These models are categorized into tie-oriented models (Butts, C., 2008, <doi:10.1111/j.1467-9531.2008.00203.x>), where the probability of a dyad interacting next is modeled in a single step, and actor-oriented models (Stadtfeld, C., & Block, P., 2017, <doi:10.15195/v4.a14>), which first model the probability of a sender initiating an interaction and subsequently the probability of the sender's choice of receiver. The package is designed to compute a variety of statistics that summarize exogenous and endogenous influences on the event stream for both types of models.
Author: Giuseppe Arena [aut] ,
Marlyne Meijerink-Bosman [aut],
Joris Mulder [aut, cre],
Diana Karimova [ctb],
Rumana Lakdawala [ctb],
Mahdi Shafiee Kamalabad [ctb],
Fabio Generoso Vieira [ctb],
Roger Leenders [ctb]
Maintainer: Joris Mulder <j.mulder3@tilburguniversity.edu>
Diff between remstats versions 3.2.5 dated 2026-03-12 and 4.0.0 dated 2026-05-09
remstats-3.2.5/remstats/inst/tinytest/test-endogenous-stats1.R |only remstats-4.0.0/remstats/DESCRIPTION | 47 remstats-4.0.0/remstats/LICENSE | 2 remstats-4.0.0/remstats/MD5 | 179 remstats-4.0.0/remstats/NAMESPACE | 7 remstats-4.0.0/remstats/R/RcppExports.R | 44 remstats-4.0.0/remstats/R/aomstats.R | 147 remstats-4.0.0/remstats/R/effects.R | 177 remstats-4.0.0/remstats/R/helpers.R | 994 ++++- remstats-4.0.0/remstats/R/methods.R | 48 remstats-4.0.0/remstats/R/remstats-package.R | 1 remstats-4.0.0/remstats/R/remstats.R | 101 remstats-4.0.0/remstats/R/stack_stats.R |only remstats-4.0.0/remstats/R/tie_effects.R | 18 remstats-4.0.0/remstats/R/tomstats.R | 833 +++- remstats-4.0.0/remstats/build/partial.rdb |binary remstats-4.0.0/remstats/build/vignette.rds |binary remstats-4.0.0/remstats/data/both_male_long.rda |binary remstats-4.0.0/remstats/data/both_male_wide.rda |binary remstats-4.0.0/remstats/data/history.rda |binary remstats-4.0.0/remstats/data/info.rda |binary remstats-4.0.0/remstats/inst/CITATION |only remstats-4.0.0/remstats/inst/WORDLIST |only remstats-4.0.0/remstats/inst/doc/remstats.R | 118 remstats-4.0.0/remstats/inst/doc/remstats.Rmd | 275 + remstats-4.0.0/remstats/inst/doc/remstats.html | 1200 ++++-- remstats-4.0.0/remstats/inst/tinytest/test-aomstats-memory-types.R |only remstats-4.0.0/remstats/inst/tinytest/test-aomstats-typed.R |only remstats-4.0.0/remstats/inst/tinytest/test-aomstats-vs-tie.R |only remstats-4.0.0/remstats/inst/tinytest/test-bind-remstats.R | 172 remstats-4.0.0/remstats/inst/tinytest/test-compare-sampled-typed-ext-FALSE.R |only remstats-4.0.0/remstats/inst/tinytest/test-compare-sampled-typed-ext-TRUE.R |only remstats-4.0.0/remstats/inst/tinytest/test-endogenous-stats2.R | 42 remstats-4.0.0/remstats/inst/tinytest/test-endogenous-stats3.R | 1045 +---- remstats-4.0.0/remstats/inst/tinytest/test-endogenous-stats4.R | 303 - 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Title: R and C++ Interfaces to 'spdlog' C++ Header Library for Logging
Description: The mature and widely-used C++ logging library 'spdlog' by Gabi Melman provides
many desirable features. This package bundles these header files for easy use by R packages
from both their R and C or C++ code. Explicit use via 'LinkingTo:' is also supported. Also
see the 'spdl' package which enhanced this package with a consistent R and C++ interface.
Author: Dirk Eddelbuettel [aut, cre] ,
Gabi Melman [aut] ,
Victor Zverovic [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSpdlog versions 0.0.28 dated 2026-03-20 and 0.0.29 dated 2026-05-09
RcppSpdlog-0.0.28/RcppSpdlog/src/Makevars |only RcppSpdlog-0.0.29/RcppSpdlog/ChangeLog | 28 +++++ RcppSpdlog-0.0.29/RcppSpdlog/DESCRIPTION | 8 - RcppSpdlog-0.0.29/RcppSpdlog/MD5 | 18 +-- RcppSpdlog-0.0.29/RcppSpdlog/build/partial.rdb |binary RcppSpdlog-0.0.29/RcppSpdlog/cleanup | 2 RcppSpdlog-0.0.29/RcppSpdlog/configure |only RcppSpdlog-0.0.29/RcppSpdlog/inst/NEWS.Rd | 10 + RcppSpdlog-0.0.29/RcppSpdlog/inst/include/RcppSpdlog | 16 +- RcppSpdlog-0.0.29/RcppSpdlog/src/Makevars.in |only RcppSpdlog-0.0.29/RcppSpdlog/src/Makevars.win |only RcppSpdlog-0.0.29/RcppSpdlog/src/formatter.cpp | 104 ++++--------------- 12 files changed, 83 insertions(+), 103 deletions(-)
Title: Unified Handling of Graphics Devices
Description: Functions for creating plots and image files in a unified way
regardless of output format (EPS, PDF, PNG, SVG, TIFF, WMF, etc.). Default
device options as well as scales and aspect ratios are controlled in a uniform
way across all device types. Switching output format requires minimal changes
in code. This package is ideal for large-scale batch processing, because it
will never leave open graphics devices or incomplete image files behind, even on
errors or user interrupts.
Author: Henrik Bengtsson [aut, cre, cph]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.devices versions 2.17.3 dated 2025-12-18 and 2.17.4 dated 2026-05-09
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 7 +++++++ R/DevEvalProduct.R | 2 +- R/capturePlot.R | 2 +- build/vignette.rds |binary inst/doc/R.devices-overview.pdf |binary man/R.devices-package.Rd | 5 +++-- 8 files changed, 23 insertions(+), 15 deletions(-)
Title: Qualitative Comparative Analysis
Description: An extensive set of functions to perform Qualitative Comparative Analysis:
crisp sets ('csQCA'), temporal ('tQCA'), multi-value ('mvQCA')
and fuzzy sets ('fsQCA'). 'QCA' is a methodology that bridges
the qualitative and quantitative divide in social science research.
It uses a Boolean minimization algorithm, resulting in a minimal causal
configuration associated with a given phenomenon.
Author: Adrian Dusa [aut, cre, cph] ,
Ciprian Paduraru [ctb] ,
Alrik Thiem [aut]
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between QCA versions 3.24 dated 2026-03-28 and 3.25 dated 2026-05-09
QCA-3.24/QCA/data/d.BWB.tab.bz2 |only QCA-3.24/QCA/data/d.Bas.tab.bz2 |only QCA-3.24/QCA/data/d.Emm.tab.bz2 |only QCA-3.24/QCA/data/d.autonomy.tab.bz2 |only QCA-3.24/QCA/data/d.biodiversity.tab.bz2 |only QCA-3.24/QCA/data/d.health.tab.bz2 |only QCA-3.24/QCA/data/d.jobsecurity.tab.bz2 |only QCA-3.25/QCA/DESCRIPTION | 20 QCA-3.25/QCA/MD5 | 261 ++-- QCA-3.25/QCA/NAMESPACE | 157 +- QCA-3.25/QCA/R/XYplot.R | 176 ++ QCA-3.25/QCA/R/Xplot.R | 187 +-- QCA-3.25/QCA/R/allExpressions.R | 27 QCA-3.25/QCA/R/calibrate.R | 87 - QCA-3.25/QCA/R/causalChain.R | 484 ++++---- QCA-3.25/QCA/R/complexity.R | 34 QCA-3.25/QCA/R/createMatrix.R | 45 QCA-3.25/QCA/R/dimnames.R | 59 QCA-3.25/QCA/R/findRows.R | 413 +++--- QCA-3.25/QCA/R/findSubsets.R | 34 QCA-3.25/QCA/R/findSupersets.R | 38 QCA-3.25/QCA/R/findTh.R | 31 QCA-3.25/QCA/R/findmin.R | 59 QCA-3.25/QCA/R/fuzzyand.R | 55 QCA-3.25/QCA/R/fuzzyor.R | 60 QCA-3.25/QCA/R/generate.R | 42 QCA-3.25/QCA/R/getRow.R | 33 QCA-3.25/QCA/R/getSolution.R | 92 + QCA-3.25/QCA/R/makeChart.R | 64 - QCA-3.25/QCA/R/minimize.R | 404 +++++- QCA-3.25/QCA/R/modelFit.R | 426 +++---- QCA-3.25/QCA/R/onAttach.R | 28 QCA-3.25/QCA/R/onUnload.R | 28 QCA-3.25/QCA/R/panel.R | 267 ++-- QCA-3.25/QCA/R/pof.R | 277 ++++ QCA-3.25/QCA/R/pofind.R | 306 ++--- QCA-3.25/QCA/R/print.R | 439 ++++++- QCA-3.25/QCA/R/removeRedundants.R | 48 QCA-3.25/QCA/R/replaceCategories.R | 32 QCA-3.25/QCA/R/retention.R | 40 QCA-3.25/QCA/R/rowDominance.R | 29 QCA-3.25/QCA/R/solveChart.R | 50 QCA-3.25/QCA/R/sortMatrix.R | 27 QCA-3.25/QCA/R/sortVector.R | 27 QCA-3.25/QCA/R/string.R | 120 + QCA-3.25/QCA/R/superSubset.R | 120 + QCA-3.25/QCA/R/truthTable.R | 182 ++- QCA-3.25/QCA/R/verifyQCA.R | 198 ++- QCA-3.25/QCA/R/writeSolution.R | 30 QCA-3.25/QCA/build |only QCA-3.25/QCA/cleanup | 1 QCA-3.25/QCA/configure | 59 QCA-3.25/QCA/configure.win | 62 + QCA-3.25/QCA/data/CVF.tab.gz |binary QCA-3.25/QCA/data/Emme.tab.gz |binary QCA-3.25/QCA/data/HC.tab.gz |binary QCA-3.25/QCA/data/HarKem.rda |binary QCA-3.25/QCA/data/Krook.tab.gz |binary QCA-3.25/QCA/data/LC.rda |binary QCA-3.25/QCA/data/LF.rda |binary QCA-3.25/QCA/data/LM.rda |binary QCA-3.25/QCA/data/NF.tab.gz |binary QCA-3.25/QCA/data/d.BWB.tab.gz |only QCA-3.25/QCA/data/d.Bas.tab.gz |only QCA-3.25/QCA/data/d.Emm.tab.gz |only QCA-3.25/QCA/data/d.HK.rda |binary QCA-3.25/QCA/data/d.HMN.tab.gz |binary QCA-3.25/QCA/data/d.Kro.tab.gz |binary QCA-3.25/QCA/data/d.SA.tab.gz |binary QCA-3.25/QCA/data/d.autonomy.tab.gz |only QCA-3.25/QCA/data/d.biodiversity.tab.gz |only QCA-3.25/QCA/data/d.health.tab.gz |only QCA-3.25/QCA/data/d.jobsecurity.tab.gz |only QCA-3.25/QCA/data/d.partybans.rda |binary QCA-3.25/QCA/data/d.represent.tab.gz |binary QCA-3.25/QCA/data/d.socialsecurity.tab.gz |binary QCA-3.25/QCA/data/d.transport.tab.gz |binary QCA-3.25/QCA/data/d.women.tab.gz |binary QCA-3.25/QCA/inst/ChangeLog | 7 QCA-3.25/QCA/man/QCA_package.Rd | 4 QCA-3.25/QCA/src/CCubes.c | 524 ++++++-- QCA-3.25/QCA/src/CCubes.h | 2 QCA-3.25/QCA/src/QCA.c | 1754 ++++++++++++++++++++++++----- QCA-3.25/QCA/src/consistency.c | 44 QCA-3.25/QCA/src/consistent_solution.c | 122 +- QCA-3.25/QCA/src/consistent_solution.h | 2 QCA-3.25/QCA/src/find_consistent_models.c | 292 ++++ QCA-3.25/QCA/src/find_consistent_models.h | 2 QCA-3.25/QCA/src/find_models.c | 275 +++- QCA-3.25/QCA/src/find_models.h | 2 QCA-3.25/QCA/src/findmin_lpsolve.c |only QCA-3.25/QCA/src/findmin_lpsolve.h |only QCA-3.25/QCA/src/findmin_scp.c |only QCA-3.25/QCA/src/findmin_scp.h |only QCA-3.25/QCA/src/generate_matrix.c | 47 QCA-3.25/QCA/src/lp_solve |only QCA-3.25/QCA/src/qca_r.h |only QCA-3.25/QCA/src/qca_rinternals.h |only QCA-3.25/QCA/src/qca_threads.c |only QCA-3.25/QCA/src/qca_threads.h |only QCA-3.25/QCA/src/registerDynamicSymbol.c | 52 QCA-3.25/QCA/src/row_dominance.c | 59 QCA-3.25/QCA/src/scp_solver |only QCA-3.25/QCA/src/solvePIchart_gurobi.c | 78 - QCA-3.25/QCA/src/solvePIchart_gurobi.h | 2 QCA-3.25/QCA/src/solvePIchart_lagrangian.c | 931 ++++++++++++--- QCA-3.25/QCA/src/solvePIchart_lagrangian.h | 7 QCA-3.25/QCA/src/sort_cols.c | 63 - QCA-3.25/QCA/src/sort_matrix.c | 66 - QCA-3.25/QCA/src/super_rows.c | 45 QCA-3.25/QCA/src/truthTable.c | 82 - QCA-3.25/QCA/src/utils.c | 228 ++- QCA-3.25/QCA/src/utils.h | 2 QCA-3.25/QCA/tools/Makevars.in | 20 QCA-3.25/QCA/tools/Makevars.win.in | 20 115 files changed, 7179 insertions(+), 3211 deletions(-)
Title: Easily Visualize Data from 'ERDDAP™' Servers via the 'rerddap'
Package
Description: Easily visualize and animate 'tabledap' and 'griddap' objects obtained via the 'rerddap' package in a simple one-line command, using either base graphics or 'ggplot2' graphics. 'plotdap' handles extracting and reshaping the data, map projections and continental outlines. Optionally the data can be animated through time using the 'gganmiate' package.
Author: Carson Sievert [aut],
Roy Mendelssohn [aut, ctb, cre]
Maintainer: Roy Mendelssohn <roy.mendelssohn@noaa.gov>
Diff between plotdap versions 1.1.1 dated 2026-01-10 and 1.2.0 dated 2026-05-09
DESCRIPTION | 14 +- MD5 | 46 ++++--- NAMESPACE | 1 NEWS.md | 6 R/add_griddap_contours.R |only R/imports.R | 6 README.md | 55 ++++---- build/vignette.rds |binary inst/doc/using_plotdap.R | 44 ++++++ inst/doc/using_plotdap.Rmd | 238 ++++++++++++++++--------------------- inst/doc/using_plotdap.html | 146 ++++++++++++++++------ man/add_griddap_contours.Rd |only man/plotdap-package.Rd | 1 man/reexports.Rd | 2 vignettes/contour1.png |only vignettes/contour2.png |only vignettes/contour3.png |only vignettes/modify2.png |binary vignettes/using_plotdap.Rmd | 238 ++++++++++++++++--------------------- vignettes/viirsSST_10000.png |binary vignettes/viirsSST_100000.png |binary vignettes/viirsSST_100000_mask.png |binary vignettes/viirsSST_50000.png |binary vignettes/viirsSST_gridland.png |binary vignettes/viirsSST_hires_mask.png |only vignettes/viirsSST_landgrid.png |binary vignettes/viirs_hires.png |binary 27 files changed, 425 insertions(+), 372 deletions(-)
Title: Processing of Model Parameters
Description: Utilities for processing the parameters of various
statistical models. Beyond computing p values, CIs, and other indices
for a wide variety of models (see list of supported models using the
function 'insight::supported_models()'), this package implements
features like bootstrapping or simulating of parameters and models,
feature reduction (feature extraction and variable selection) as well
as functions to describe data and variable characteristics (e.g.
skewness, kurtosis, smoothness or distribution).
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut] ,
Mattan S. Ben-Shachar [aut] ,
Indrajeet Patil [aut] ,
Soeren Hoejsgaard [aut],
Brenton M. Wiernik [aut] ,
Zen J. Lau [ctb],
Vincent Arel-Bundock [ctb] ,
Jeffrey Girard [ctb] ,
Christina Maimone [re [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between parameters versions 0.28.3 dated 2025-11-25 and 0.29.0 dated 2026-05-09
DESCRIPTION | 39 - MD5 | 115 ++-- NAMESPACE | 2 NEWS.md | 43 + R/1_model_parameters.R | 18 R/4_standard_error.R | 32 - R/extract_parameters.R | 133 ++++- R/extract_random_variances.R | 554 ++++++++++++++++------- R/format.R | 387 +++++++++++----- R/format_p_adjust.R | 96 ++- R/format_parameters.R | 13 R/methods_coxme.R | 72 +- R/methods_gam.R | 44 + R/methods_glmmTMB.R | 4 R/methods_htest.R | 263 ++++++++-- R/methods_lavaan.R | 57 +- R/methods_lavaan.mi.R |only R/methods_lme4.R | 83 +-- R/methods_marginaleffects.R | 30 - R/methods_mjoint.R | 29 - R/methods_panelr.R | 121 ++--- R/methods_psych.R | 65 +- R/methods_survival.R | 69 +- R/methods_svy2lme.R | 29 - R/n_factors.R | 255 ++++++---- R/print.parameters_model.R | 96 ++- R/standardize_parameters.R | 410 +++++++++++------ R/utils_model_parameters.R | 175 +++++-- build/partial.rdb |binary build/vignette.rds |binary man/figures/card.png |binary man/figures/figure1.png |binary man/figures/figure2.png |binary man/figures/logo.png |binary man/figures/unconditional_interpretation.png |binary man/model_parameters.brmsfit.Rd | 9 man/model_parameters.default.Rd | 2 man/model_parameters.principal.Rd | 2 man/n_factors.Rd | 4 man/p_value.Rd | 11 man/standard_error.Rd | 13 man/standardize_parameters.Rd | 4 tests/testthat/test-brms.R | 37 + tests/testthat/test-coxph.R | 66 ++ tests/testthat/test-glmmTMB.R | 124 ++--- tests/testthat/test-lavaan.mi.R |only tests/testthat/test-marginaleffects.R | 156 +++++- tests/testthat/test-model_parameters.cgam.R | 12 tests/testthat/test-model_parameters.epi2x2.R | 15 tests/testthat/test-model_parameters.gam.R | 55 +- tests/testthat/test-model_parameters.htest.R | 256 ++++++++++ tests/testthat/test-model_parameters_std.R | 53 +- tests/testthat/test-model_parameters_std_mixed.R | 20 tests/testthat/test-p_adjust.R | 95 +++ tests/testthat/test-printing.R | 482 ++++++++++++++++---- tests/testthat/test-printing2.R | 399 +++++++++++----- tests/testthat/test-random_effects_ci-glmmTMB.R | 2 tests/testthat/test-random_effects_covstruct.R |only tests/testthat/test-simulate_model.R | 11 tests/testthat/test-standardize_parameters.R | 219 +++++---- 60 files changed, 3716 insertions(+), 1565 deletions(-)
Title: Unified Framework for Numerical Optimizers
Description: Provides a unified object-oriented framework for numerical
optimizers in R. Supports minimization and maximization with any optimizer,
optimization over more than one function argument, computation time
measurement, and time limits for long optimization tasks.
Author: Lennart Oelschlaeger [aut, cre] ,
Marius Oetting [ctb]
Maintainer: Lennart Oelschlaeger <oelschlaeger.lennart@gmail.com>
Diff between optimizeR versions 1.2.1 dated 2025-06-26 and 1.3.0 dated 2026-05-09
DESCRIPTION | 19 +- MD5 | 32 ++-- NEWS.md | 88 ++++++++--- R/objective.R | 229 +++++++++++++++++++++--------- R/optimizeR-package.R | 71 ++++----- R/optimizer.R | 245 +++++++++++++++++++-------------- R/optimizer_dictionary.R | 32 ++-- R/parameter_spaces.R | 53 ++++--- README.md | 131 ++++++++--------- man/Objective.Rd | 36 +++- man/Optimizer.Rd | 123 ++++++++++------ man/ParameterSpaces.Rd | 16 +- man/optimizeR-package.Rd | 60 +++++++- man/optimizer_dictionary.Rd | 40 ++--- tests/testthat/test-objective.R | 54 +++++-- tests/testthat/test-optimizer.R | 95 ++++++++---- tests/testthat/test-parameter_spaces.R | 11 - 17 files changed, 847 insertions(+), 488 deletions(-)
Title: Kernel Smoothing
Description: Kernel smoothers for univariate and multivariate data, with comprehensive visualisation and bandwidth selection capabilities, including for densities, density derivatives, cumulative distributions, clustering, classification, density ridges, significant modal regions, and two-sample hypothesis tests. Chacon & Duong (2018) <doi:10.1201/9780429485572>.
Author: Tarn Duong [aut, cre] ,
Matt Wand [ctb] ,
Jose Chacon [ctb],
Artur Gramacki [ctb]
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between ks versions 1.15.1 dated 2025-05-04 and 1.15.2 dated 2026-05-09
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Title: Antedependence Models for Longitudinal Data
Description: Fitting, simulation, and inference for antedependence models for
longitudinal data, as described in Zimmerman and Nunez-Anton (2009,
ISBN:9781420011074). Supports integer-valued antedependence (INAD) models
for count data with thinning operators (binomial, Poisson, negative binomial)
and flexible innovation distributions (Poisson, Bell, negative binomial),
categorical antedependence models for discrete-state longitudinal outcomes,
and Gaussian antedependence (AD) models for continuous data. Implements
maximum likelihood estimation via time-separable optimization and block
coordinate descent, with confidence intervals based on Louis' identity and
profile likelihood.
Author: Chenyang Li [aut, cre],
Dale Zimmerman [aut, ctb]
Maintainer: Chenyang Li <chenyang-li@uiowa.edu>
Diff between antedep versions 0.1.0 dated 2026-04-24 and 0.2.0 dated 2026-05-09
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Title: Shiny Application for Latent Structure Analysis with a Graphical
User Interface
Description: Provides an interactive Shiny-based toolkit for conducting latent structure analyses, including Latent Profile Analysis (LPA), Latent Class Analysis (LCA), Latent Trait Analysis (LTA/IRT), Exploratory Factor Analysis (EFA), Confirmatory Factor Analysis (CFA), and Structural Equation Modeling (SEM). The implementation is grounded in established methodological frameworks: LPA is supported through 'tidyLPA' (Rosenberg et al., 2018) <doi:10.21105/joss.00978>, LCA through 'poLCA' (Linzer & Lewis, 2011) <doi:10.32614/CRAN.package.poLCA> & 'glca' (Kim & Kim, 2024) <doi:10.32614/CRAN.package.glca>, LTA/IRT via 'mirt' (Chalmers, 2012) <doi:10.18637/jss.v048.i06>, and EFA via 'psych' (Revelle, 2025). SEM and CFA functionalities build upon the 'lavaan' framework (Rosseel, 2012) <doi:10.18637/jss.v048.i02>. Users can upload datasets or use built-in examples, fit models, compare fit indices, visualize results, and export outputs without programming.
Author: Hasan Djidu [aut, cre] ,
Heri Retnawati [ctb] ,
Samsul Hadi [ctb] ,
Haryanto [ctb]
Maintainer: Hasan Djidu <hasandjidu@gmail.com>
Diff between projectLSA versions 0.0.8 dated 2026-02-07 and 0.0.9 dated 2026-05-09
DESCRIPTION | 21 - MD5 | 27 + NEWS.md | 20 + README.md | 30 +- build/vignette.rds |binary inst/CITATION |only inst/app/app.R | 214 ++++++++++----- inst/app/cfa_report.Rmd |only inst/app/cfa_ui.R | 141 ++++------ inst/app/homepage_ui.R | 19 - inst/app/rsconnect |only inst/app/serverCFA.R | 641 +++++++++++++++++++++++++++++++++++----------- inst/app/serverLCA.R | 29 +- inst/app/serverLPA.R | 2 inst/app/styleCSS.R | 10 man/projectLSA-package.Rd | 12 16 files changed, 817 insertions(+), 349 deletions(-)
Title: 'S7' Framework for Schema-Validated YAML Configuration
Description: Provides a generic framework for working with YAML (YAML
Ain't Markup Language) configuration files. Uses 'ajv' (Another JSON
Schema Validator) via 'V8' to validate configurations against JSON
Schema definitions. Configuration objects inherit from 'S7' classes
and base lists, supporting downstream extension through custom classes
and methods.
Author: Aksel Thomsen [aut, cre],
Matthew Phelps [aut],
Novo Nordisk A/S [cph],
Evgeny Poberezkin [cph] ,
Python Software Foundation [cph] ),
Vladimir Zapparov [cph] ,
Vincent Le Goff [cph] ,
Vsevolod Strukchinsky [cph]
Maintainer: Aksel Thomsen <oath@novonordisk.com>
Diff between S7schema versions 0.1.0 dated 2026-03-13 and 0.1.1 dated 2026-05-09
DESCRIPTION | 6 +++--- MD5 | 28 ++++++++++++++-------------- NEWS.md | 4 ++++ R/z_write.R | 18 +++++++++++------- build/vignette.rds |binary inst/doc/S7schema.R | 2 +- inst/doc/S7schema.Rmd | 2 +- inst/doc/S7schema.html | 14 +++++++------- inst/doc/use-in-package.R | 2 +- inst/doc/use-in-package.Rmd | 2 +- inst/doc/use-in-package.html | 8 ++++---- man/write_config.Rd | 6 +++--- tests/testthat/test-z_write.R | 28 +++++++++++++++++++++++++++- vignettes/S7schema.Rmd | 2 +- vignettes/use-in-package.Rmd | 2 +- 15 files changed, 79 insertions(+), 45 deletions(-)
Title: Bivariate Angular Mixture Models
Description: Fit (using Bayesian methods) and simulate mixtures of univariate and bivariate angular distributions. Chakraborty and Wong (2021) <doi:10.18637/jss.v099.i11>.
Author: Saptarshi Chakraborty [aut, cre],
Samuel W.K. Wong [aut],
Florence Bockting [ctb]
Maintainer: Saptarshi Chakraborty <chakra.saptarshi@gmail.com>
Diff between BAMBI versions 2.3.6 dated 2024-10-25 and 2.3.7 dated 2026-05-09
DESCRIPTION | 19 ++++++++++++------- MD5 | 6 +++--- R/all_model_select.R | 16 +++++++++++----- build/partial.rdb |binary 4 files changed, 26 insertions(+), 15 deletions(-)
Title: Geometric Markov Chain Sampling
Description: Simulates from discrete and continuous target distributions using geometric
Metropolis-Hastings (MH) algorithms. Users specify the target distribution by an R
function that evaluates the log un-normalized pdf or pmf. The package also contains a
function implementing a specific geometric MH algorithm for performing high-dimensional
Bayesian variable selection.
Author: Vivekananda Roy [aut, cre]
Maintainer: Vivekananda Roy <vroy@iastate.edu>
Diff between geommc versions 1.3.1 dated 2026-02-27 and 1.3.2 dated 2026-05-09
DESCRIPTION | 12 +- MD5 | 26 ++--- NAMESPACE | 1 R/auxifns.R | 41 ++++++++- R/geomc.R | 221 ++++++++++++++++++++++++++++++++++++++++--------- build/vignette.rds |binary inst/doc/geomc-vs.html | 22 ++-- inst/doc/geomc.R | 11 +- inst/doc/geomc.Rmd | 11 +- inst/doc/geomc.pdf |binary man/geomc.Rd | 32 +++++-- man/geommc-package.Rd | 5 + vignettes/geomc.Rmd | 11 +- vignettes/geomc.html | 31 +++--- 14 files changed, 313 insertions(+), 111 deletions(-)