Title: 'vcd' Extensions and Additions
Description: Provides additional data sets, methods and documentation to complement the 'vcd' package for Visualizing Categorical Data
and the 'gnm' package for Generalized Nonlinear Models.
In particular, 'vcdExtra' extends mosaic, assoc and sieve plots from 'vcd' to handle 'glm()' and 'gnm()' models and
adds a 3D version in 'mosaic3d'. Additionally, methods are provided for comparing and visualizing lists of
'glm' and 'loglm' objects. This package is now a support package for the book, "Discrete Data Analysis with R" by
Michael Friendly and David Meyer.
Author: Michael Friendly [aut, cre] ,
David Meyer [ctb],
Achim Zeileis [ctb] ,
Duncan Murdoch [ctb],
Heather Turner [ctb] ,
David Firth [ctb],
Daniel Sabanes Bove [ctb],
Matt Kumar [ctb],
Shuguang Sun [ctb],
Gavin Klorfine [aut]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between vcdExtra versions 0.9.3 dated 2026-03-18 and 0.9.6 dated 2026-06-07
DESCRIPTION | 19 + MD5 | 129 +++++++------ NAMESPACE | 8 NEWS.md | 24 ++ R/HLtest.R | 3 R/as_array.R | 43 +++- R/as_caseform.R | 46 +++- R/as_freqform.R | 61 ++++-- R/as_matrix.R |only R/as_table.R | 24 +- R/assoc_graph.R | 2 R/collapse.table.R | 8 R/collapse_levels.R |only R/color_table.R | 2 R/data.R | 6 R/expand.dft.R | 13 - R/loglin-utilities.R | 7 R/mcaplot.R | 4 R/seq_mosaic.R | 4 build/vignette.rds |binary inst/doc/a1-creating.R | 46 ++++ inst/doc/a1-creating.Rmd | 91 +++++++++ inst/doc/a1-creating.html | 336 ++++++++++++++++++++++------------ inst/doc/a1a-convert-collapse.R |only inst/doc/a1a-convert-collapse.Rmd |only inst/doc/a1a-convert-collapse.html |only inst/doc/a2-tests.html | 25 +- inst/doc/a3-loglinear.html | 4 inst/doc/a4-mosaics.html | 4 inst/doc/a5-demo-housing.html | 4 inst/doc/a6-mobility.html | 4 inst/doc/a7-continuous.html | 6 inst/doc/datasets.html | 4 inst/doc/tidyCats.html | 4 man/AirCrash.Rd | 2 man/CMHtest.Rd | 10 - man/Fungicide.Rd | 2 man/GKgamma.Rd | 10 - man/HLtest.Rd | 10 - man/Kway.Rd | 10 - man/LRstats.Rd | 10 - man/Toxaemia.Rd | 2 man/as_array.Rd | 38 +++ man/as_caseform.Rd | 20 +- man/as_freqform.Rd | 43 +++- man/as_matrix.Rd |only man/as_table.Rd | 18 + man/assoc_graph.Rd | 12 - man/collapse.table.Rd | 7 man/collapse_levels.Rd |only man/color_table.Rd | 2 man/expand.dft.Rd | 4 man/get_model.Rd | 22 +- man/glmlist.Rd | 22 +- man/loglin-utilities.Rd | 22 -- man/mcaplot.Rd | 4 man/mosaic.glm.Rd | 6 man/mosaic.glmlist.Rd | 16 - man/mosaic3d.Rd | 6 man/plot.assoc_graph.Rd | 12 - man/seq_loglm.Rd | 12 - man/seq_mosaic.Rd | 4 man/woolf_test.Rd | 10 - man/zero.test.Rd | 10 - tests/testthat/test-as_array.R |only tests/testthat/test-as_caseform.R |only tests/testthat/test-as_freqform.R |only tests/testthat/test-as_matrix.R |only tests/testthat/test-collapse_levels.R |only vignettes/a1-creating.Rmd | 91 +++++++++ vignettes/a1a-convert-collapse.Rmd |only vignettes/fig/convnetwork.png |only vignettes/fig/formhex.png |only 73 files changed, 956 insertions(+), 412 deletions(-)
Title: Linear Programming via Regularized Least Squares
Description: The Linear Programming via Regularized Least Squares (LPPinv) is a
two-stage estimation method that reformulates linear programs as
structured least-squares problems. Based on the Convex Least
Squares Programming (CLSP) framework, LPPinv solves linear
inequality, equality, and bound constraints by (1) constructing a
canonical constraint system and computing a pseudoinverse
projection, followed by (2) a convex-programming correction stage
to refine the solution under additional regularization (e.g.,
Lasso, Ridge, or Elastic Net). LPPinv is intended for
underdetermined and ill-posed linear problems, for which standard
solvers fail.
Author: Ilya Bolotov [aut, cre]
Maintainer: Ilya Bolotov <ilya.bolotov@vse.cz>
Diff between rlppinv versions 1.0.0 dated 2026-05-16 and 1.1.0 dated 2026-06-07
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- NEWS.md | 5 +++++ 3 files changed, 12 insertions(+), 7 deletions(-)
Title: Tinyverse R Wrapper for the 'Spotify' Web API
Description: An R wrapper for the 'Spotify' Web API
<https://developer.spotify.com/web-api/>.
Author: Troy Hernandez [aut, cre, cph] ,
Charlie Thompson [aut, cph],
Josiah Parry [aut],
Donal Phipps [aut],
Tom Wolff [aut]
Maintainer: Troy Hernandez <troy@cornball.ai>
Diff between tinyspotifyr versions 0.2.2 dated 2021-02-24 and 0.2.3 dated 2026-06-07
tinyspotifyr-0.2.2/tinyspotifyr/man/tinyspotifyr.Rd |only tinyspotifyr-0.2.3/tinyspotifyr/DESCRIPTION | 30 - tinyspotifyr-0.2.3/tinyspotifyr/MD5 | 167 +++++----- tinyspotifyr-0.2.3/tinyspotifyr/NAMESPACE | 9 tinyspotifyr-0.2.3/tinyspotifyr/R/albums.R | 6 tinyspotifyr-0.2.3/tinyspotifyr/R/artists.R | 10 tinyspotifyr-0.2.3/tinyspotifyr/R/browse.R | 20 - tinyspotifyr-0.2.3/tinyspotifyr/R/library.R | 4 tinyspotifyr-0.2.3/tinyspotifyr/R/personalization.R | 2 tinyspotifyr-0.2.3/tinyspotifyr/R/player.R | 6 tinyspotifyr-0.2.3/tinyspotifyr/R/playlists.R | 16 tinyspotifyr-0.2.3/tinyspotifyr/R/search.R | 2 tinyspotifyr-0.2.3/tinyspotifyr/R/shows.R | 8 tinyspotifyr-0.2.3/tinyspotifyr/R/tinyspotifyr.R | 9 tinyspotifyr-0.2.3/tinyspotifyr/R/tracks.R | 14 tinyspotifyr-0.2.3/tinyspotifyr/R/users_profile.R | 4 tinyspotifyr-0.2.3/tinyspotifyr/README.md | 8 tinyspotifyr-0.2.3/tinyspotifyr/build |only tinyspotifyr-0.2.3/tinyspotifyr/man/add_items_to_playlist.Rd | 12 tinyspotifyr-0.2.3/tinyspotifyr/man/add_latest_to_playlist.Rd | 12 tinyspotifyr-0.2.3/tinyspotifyr/man/add_tracks_to_playlist.Rd | 12 tinyspotifyr-0.2.3/tinyspotifyr/man/change_playlist_details.Rd | 14 tinyspotifyr-0.2.3/tinyspotifyr/man/check_me_following.Rd | 3 tinyspotifyr-0.2.3/tinyspotifyr/man/check_users_following.Rd | 10 tinyspotifyr-0.2.3/tinyspotifyr/man/create_playlist.Rd | 14 tinyspotifyr-0.2.3/tinyspotifyr/man/figures |only tinyspotifyr-0.2.3/tinyspotifyr/man/follow_artists_or_users.Rd | 10 tinyspotifyr-0.2.3/tinyspotifyr/man/follow_playlist.Rd | 10 tinyspotifyr-0.2.3/tinyspotifyr/man/get_album.Rd | 5 tinyspotifyr-0.2.3/tinyspotifyr/man/get_album_tracks.Rd | 16 tinyspotifyr-0.2.3/tinyspotifyr/man/get_albums.Rd | 13 tinyspotifyr-0.2.3/tinyspotifyr/man/get_artist.Rd | 5 tinyspotifyr-0.2.3/tinyspotifyr/man/get_artist_albums.Rd | 19 - tinyspotifyr-0.2.3/tinyspotifyr/man/get_artist_top_tracks.Rd | 14 tinyspotifyr-0.2.3/tinyspotifyr/man/get_artists.Rd | 12 tinyspotifyr-0.2.3/tinyspotifyr/man/get_categories.Rd | 5 tinyspotifyr-0.2.3/tinyspotifyr/man/get_category.Rd | 13 tinyspotifyr-0.2.3/tinyspotifyr/man/get_category_playlists.Rd | 16 tinyspotifyr-0.2.3/tinyspotifyr/man/get_featured_playlists.Rd | 18 - tinyspotifyr-0.2.3/tinyspotifyr/man/get_latest_episode.Rd | 12 tinyspotifyr-0.2.3/tinyspotifyr/man/get_my_current_playback.Rd | 11 tinyspotifyr-0.2.3/tinyspotifyr/man/get_my_currently_playing.Rd | 11 tinyspotifyr-0.2.3/tinyspotifyr/man/get_my_devices.Rd | 5 tinyspotifyr-0.2.3/tinyspotifyr/man/get_my_followed_artists.Rd | 12 tinyspotifyr-0.2.3/tinyspotifyr/man/get_my_playlists.Rd | 14 tinyspotifyr-0.2.3/tinyspotifyr/man/get_my_profile.Rd | 5 tinyspotifyr-0.2.3/tinyspotifyr/man/get_my_recently_played.Rd | 13 tinyspotifyr-0.2.3/tinyspotifyr/man/get_my_saved_albums.Rd | 15 tinyspotifyr-0.2.3/tinyspotifyr/man/get_my_saved_tracks.Rd | 15 tinyspotifyr-0.2.3/tinyspotifyr/man/get_my_top_artists_or_tracks.Rd | 17 - tinyspotifyr-0.2.3/tinyspotifyr/man/get_new_releases.Rd | 15 tinyspotifyr-0.2.3/tinyspotifyr/man/get_playlist.Rd | 13 tinyspotifyr-0.2.3/tinyspotifyr/man/get_playlist_cover_image.Rd | 11 tinyspotifyr-0.2.3/tinyspotifyr/man/get_playlist_items.Rd | 17 - tinyspotifyr-0.2.3/tinyspotifyr/man/get_playlist_tracks.Rd | 17 - tinyspotifyr-0.2.3/tinyspotifyr/man/get_recommendations.Rd | 86 +---- tinyspotifyr-0.2.3/tinyspotifyr/man/get_related_artists.Rd | 12 tinyspotifyr-0.2.3/tinyspotifyr/man/get_show.Rd | 5 tinyspotifyr-0.2.3/tinyspotifyr/man/get_shows.Rd | 5 tinyspotifyr-0.2.3/tinyspotifyr/man/get_shows_episodes.Rd | 11 tinyspotifyr-0.2.3/tinyspotifyr/man/get_spotify_access_token.Rd | 9 tinyspotifyr-0.2.3/tinyspotifyr/man/get_spotify_authorization_code.Rd | 11 tinyspotifyr-0.2.3/tinyspotifyr/man/get_track.Rd | 5 tinyspotifyr-0.2.3/tinyspotifyr/man/get_track_audio_analysis.Rd | 5 tinyspotifyr-0.2.3/tinyspotifyr/man/get_track_audio_features.Rd | 10 tinyspotifyr-0.2.3/tinyspotifyr/man/get_tracks.Rd | 13 tinyspotifyr-0.2.3/tinyspotifyr/man/get_user_playlists.Rd | 15 tinyspotifyr-0.2.3/tinyspotifyr/man/get_user_profile.Rd | 5 tinyspotifyr-0.2.3/tinyspotifyr/man/is_uri.Rd | 3 tinyspotifyr-0.2.3/tinyspotifyr/man/pause_my_playback.Rd | 9 tinyspotifyr-0.2.3/tinyspotifyr/man/pitch_class_lookup.Rd | 6 tinyspotifyr-0.2.3/tinyspotifyr/man/remove_tracks_from_playlist.Rd | 10 tinyspotifyr-0.2.3/tinyspotifyr/man/reorder_replace_playlist_items.Rd | 10 tinyspotifyr-0.2.3/tinyspotifyr/man/scopes.Rd | 6 tinyspotifyr-0.2.3/tinyspotifyr/man/search_spotify.Rd | 19 - tinyspotifyr-0.2.3/tinyspotifyr/man/seek_to_position.Rd | 10 tinyspotifyr-0.2.3/tinyspotifyr/man/set_my_repeat_mode.Rd | 10 tinyspotifyr-0.2.3/tinyspotifyr/man/set_my_volume.Rd | 10 tinyspotifyr-0.2.3/tinyspotifyr/man/skip_my_playback.Rd | 9 tinyspotifyr-0.2.3/tinyspotifyr/man/skip_my_playback_previous.Rd | 9 tinyspotifyr-0.2.3/tinyspotifyr/man/start_my_playback.Rd | 14 tinyspotifyr-0.2.3/tinyspotifyr/man/tinyspotifyr-package.Rd |only tinyspotifyr-0.2.3/tinyspotifyr/man/toggle_my_shuffle.Rd | 10 tinyspotifyr-0.2.3/tinyspotifyr/man/transfer_my_playback.Rd | 10 tinyspotifyr-0.2.3/tinyspotifyr/man/unfollow_playlist.Rd | 8 tinyspotifyr-0.2.3/tinyspotifyr/man/verify_result.Rd | 3 86 files changed, 422 insertions(+), 677 deletions(-)
Title: Simplified Statistical Analysis with Plain-English
Interpretation
Description: A toolkit for common statistical analyses including descriptive statistics, Student's t-tests (one-sample, independent, and paired), one-way and two-way Analysis of Variance (ANOVA), Multivariate Analysis of Variance (MANOVA), chi-square tests, correlation analysis, simple and multiple linear regression, logistic regression, and non-parametric tests (Mann-Whitney U, Wilcoxon Signed Rank, and Kruskal-Wallis). Each function automatically interprets results in plain English, reporting effect sizes, confidence intervals, and p-value interpretations. Post-hoc tests are automatically applied following significant results. A master function automatically detects the appropriate test based on the structure of the input data. Methods are based on Cohen, J. (1988) <doi:10.4324/9780203771587>, Tukey, J. W. (1949) <doi:10.2307/3001913>, and Shapiro and Wilk (1965) <doi:10.2307/2333709>.
Author: Uwakmfon Paul [aut, cre, cph]
Maintainer: Uwakmfon Paul <uwakmfon31@gmail.com>
Diff between statease versions 1.2.0 dated 2026-06-02 and 1.2.1 dated 2026-06-07
DESCRIPTION | 6 ++-- MD5 | 8 ++--- NEWS.md | 2 + R/nonparam_interpret.R | 29 ++++++++++++++++--- inst/doc/statease.html | 72 ++++++++++++++++++++++++++++--------------------- 5 files changed, 75 insertions(+), 42 deletions(-)
Title: R Interface to the 'QuantLib' Library
Description: The 'RQuantLib' package makes parts of 'QuantLib' accessible from R
The 'QuantLib' project aims to provide a comprehensive software framework
for quantitative finance. The goal is to provide a standard open source library
for quantitative analysis, modeling, trading, and risk management of financial
assets.
Author: Dirk Eddelbuettel [aut, cre] ,
Khanh Nguyen [aut] ,
Terry Leitch [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RQuantLib versions 0.4.26 dated 2025-04-24 and 0.4.27 dated 2026-06-07
ChangeLog | 119 +++++++++++++++++++++++ DESCRIPTION | 15 +- MD5 | 50 ++++----- NAMESPACE | 3 R/RcppExports.R | 28 ++--- R/implied.R | 41 ++++---- R/option.R | 60 ++++++----- configure | 18 +-- configure.ac | 2 data/tsQuotes.RData |binary data/vcube.RData |binary inst/NEWS.Rd | 12 ++ inst/include/RQuantLib_RcppExports.h | 32 +++--- inst/include/rquantlib_internal.h | 3 man/AmericanOption.Rd | 24 ++-- man/AmericanOptionImpliedVolatility.Rd | 13 +- man/BarrierOption.Rd | 18 +-- man/BinaryOption.Rd | 16 +-- man/BinaryOptionImpliedVolatility.Rd | 10 + man/EuropeanOption.Rd | 24 ++-- man/EuropeanOptionImpliedVolatility.Rd | 14 +- src/RcppExports.cpp | 168 +++++++++++++++++---------------- src/barrier_binary.cpp | 67 ++++++------- src/implieds.cpp | 48 ++++----- src/utils.cpp | 94 ++++++++++-------- src/vanilla.cpp | 49 +++++---- 26 files changed, 562 insertions(+), 366 deletions(-)
Title: A Modular Two-Step Convex Optimization Estimator for Ill-Posed
Problems
Description: Convex Least Squares Programming (CLSP) is a two-step estimator
for solving underdetermined, ill-posed, or structurally constrained
least-squares problems. It combines pseudoinverse-based estimation with
convex-programming correction methods inspired by Lasso, Ridge, and
Elastic Net to ensure numerical stability, constraint enforcement, and
interpretability. The package also provides numerical stability analysis
and CLSP-specific diagnostics, including partial R^2, normalized RMSE
(NRMSE), Monte Carlo t-tests for mean NRMSE, and condition-number-based
confidence bands.
Author: Ilya Bolotov [aut, cre]
Maintainer: Ilya Bolotov <ilya.bolotov@vse.cz>
Diff between rclsp versions 1.0.0 dated 2026-05-16 and 1.1.0 dated 2026-06-07
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- NEWS.md | 12 ++++++++++++ R/clsp.R | 4 ++-- 4 files changed, 22 insertions(+), 10 deletions(-)
Title: Alternative Continuous and Discrete Distributions
Description: The aim is to develop an R package, which is the 'new.dist'
package, for the probability (density) function, the
distribution function, the quantile function and the
associated random number generation function for discrete and
continuous distributions, which have recently been proposed
in the literature. This package implements the following
distributions: The Power Muth Distribution, a Bimodal Weibull
Distribution, the Discrete Lindley Distribution, The
Gamma-Lomax Distribution, Weighted Geometric Distribution, a
Power Log-Dagum Distribution, Kumaraswamy Distribution,
Lindley Distribution, the Unit-Inverse Gaussian Distribution,
EP Distribution, Akash Distribution, Ishita Distribution,
Maxwell Distribution, the Standard Omega Distribution,
Slashed Generalized Rayleigh Distribution, Two-Parameter
Rayleigh Distribution, Muth Distribution, Uniform-Geometric
Distribution, Discrete Weibull Distribution.
Author: Ramazan Akman [cre, ctb]
,
Coskun Kus [aut, ctb] ,
Ihab Abusaif [aut, ctb]
Maintainer: Ramazan Akman <ramazanakman12345@gmail.com>
Diff between new.dist versions 0.1.1 dated 2023-12-09 and 0.1.2 dated 2026-06-07
DESCRIPTION | 6 INDEX |only MD5 | 43 ++- R/Ld.R | 2 R/RA.R | 2 R/bwd.R | 4 R/dLd1.R | 2 R/dLd2.R | 2 R/gld.R | 4 R/kd.R | 2 R/md.R | 2 R/omd.R | 2 R/pldd.R | 2 R/sgrd.R | 2 R/sod.R | 2 R/tpmd.R | 2 R/tprd.R | 2 R/ugd.R | 2 R/uigd.R | 2 R/wgd.R | 2 build/vignette.rds |binary inst/doc/new_dist.html | 4 tests/testthat/test_function.R | 451 ++++++++++++++++++----------------------- 23 files changed, 247 insertions(+), 295 deletions(-)
Title: Misreported Time Series Analysis
Description: Provides a simple and trustworthy methodology for the analysis of
misreported continuous time series using either a frequentist
(bootstrap-based EM algorithm) or a Bayesian (MCMC via JAGS) approach.
The frequentist method is described in Morina et al. (2021)
<doi:10.1038/s41598-021-02620-5>. The Bayesian extension fits the same
ARMA model with misreporting structure using a full posterior distribution,
providing credible intervals and DIC for model comparison, as described in
Morina et al. (2024) <doi:10.1101/2024.02.26.24303373>.
Author: David Morina Soler [aut, cre] ,
Amanda Fernandez-Fontelo [aut],
Alejandra Cabana [aut],
Pedro Puig [aut],
Biel Abarca Galvan [aut]
Maintainer: David Morina Soler <David.Morina@uab.cat>
Diff between MisRepARMA versions 0.0.2 dated 2021-07-14 and 0.2.0 dated 2026-06-07
DESCRIPTION | 59 ++++-- MD5 | 25 +- NAMESPACE | 10 - R/estimate.R | 6 R/estimate_bayes.R |only R/fitMisRepARMA.R | 368 +++++++++++++++++++++++++++++++++++----- R/print.summary.fitMisRepARMA.R | 32 ++- R/reconstruct.R | 35 ++- R/summary.fitMisRepARMA.R | 74 ++++++-- build |only inst |only man/MisRepARMA-internal.Rd | 59 +++++- man/MisRepARMA-package.Rd | 92 +++++----- man/fitMisRepARMA.Rd | 156 +++++++++------- man/reconstruct.Rd | 115 +++++++----- 15 files changed, 733 insertions(+), 298 deletions(-)
Title: Unidimensional Item Response Theory Modeling
Description: Fit unidimensional item response theory (IRT) models to test
data, which includes both dichotomous and polytomous items, calibrate
pretest item parameters, estimate examinees' abilities, and examine
the IRT model-data fit on item-level in different ways as well as provide
useful functions related to IRT analyses such as IRT model-data fit
evaluation and differential item functioning analysis.
The bring.flexmirt() and write.flexmirt() functions were written by modifying
the read.flexmirt() function (Pritikin & Falk (2022) <doi:10.1177/0146621620929431>).
The bring.bilog() and bring.parscale() functions were written by modifying the read.bilog()
and read.parscale() functions, respectively (Weeks (2010) <doi:10.18637/jss.v035.i12>).
The bisection() function was written by modifying the bisection() function
(Howard (2017, ISBN:9780367657918)). The code of the inverse test characteristic curve
scoring in the est_score() function was written by modifying the irt.eq.tse() func [...truncated...]
Author: Hwanggyu Lim [aut, cre],
Craig S. Wells [ctb],
James Howard [ctb],
Joshua Pritikin [ctb],
Jonathan P Weeks [ctb],
Jorge Gonzalez [ctb],
David Magis [ctb]
Maintainer: Hwanggyu Lim <hglim83@gmail.com>
Diff between irtQ versions 1.0.0 dated 2025-07-16 and 1.1.0 dated 2026-06-07
DESCRIPTION | 14 - MD5 | 108 +++++---- NAMESPACE | 9 NEWS.md | 95 +++++++- R/EM.R | 188 ++++++++++------ R/cac_lee.R | 2 R/cac_rud.R | 130 +++++++---- R/catsib.R | 276 +++++++++++++++-------- R/collapse_ftable.R | 53 ++++ R/covirt.R | 9 R/eap_sum.R | 4 R/est_irt.R | 585 +++++++++++++++++++++++--------------------------- R/est_item.R | 140 ++++++----- R/est_mg.R | 241 ++++++++------------ R/est_score.R | 530 ++++++++++++++++++++++++++------------------- R/estimation.R | 245 +++++++++----------- R/expFreq.R | 35 +- R/gradient.R | 120 ++++++---- R/hessian.R | 153 +++++++++---- R/info.R | 34 +- R/info_xpd.R | 319 +++++++++++++++++---------- R/inv_tcc.R | 5 R/irtQ-package.R | 40 +-- R/likelihood.R | 114 +++++++-- R/loglike_item.R | 52 +++- R/lwrc.R | 108 +++++++++ R/optim_fns.R |only R/pcd2.R | 29 -- R/plot_info.R | 4 R/plot_irtfit.R | 4 R/plot_traceline.R | 2 R/posterior.R | 99 ++++++-- R/reval_mst.R | 10 R/ripd.R |only R/simMST.R | 4 R/sx2_fit.R | 334 +++++++++++++--------------- R/util.R | 67 +++++ README.md | 259 +++++++++++----------- build/partial.rdb |binary man/cac_rud.Rd | 54 +++- man/catsib.Rd | 32 ++ man/covirt.Rd | 4 man/est_irt.Rd | 23 + man/est_item.Rd | 18 + man/est_mg.Rd | 23 + man/est_score.Rd | 40 ++- man/figures/logo.png |only man/irtQ-package.Rd | 35 +- man/plot.info.Rd | 4 man/plot.traceline.Rd | 2 man/reval_mst.Rd | 10 man/ripd.Rd |only man/simMST.Rd | 4 tests |only 54 files changed, 2804 insertions(+), 1866 deletions(-)
Title: Approximate Optimal Experimental Designs Using Generalised
Linear Mixed Models
Description: Optimal design analysis algorithms for any study design that can be represented or
modelled as a generalised linear mixed model including cluster randomised trials,
cohort studies, spatial and temporal epidemiological studies, and split-plot designs.
See <https://github.com/samuel-watson/glmmrBase/blob/master/README.md> for a
detailed manual on model specification. A detailed discussion of the methods in this
package can be found in Watson, Hemming, and Girling (2023) <doi:10.1177/09622802231202379>.
Author: Sam Watson [aut, cre],
Yi Pan [aut]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
This is a re-admission after prior archival of version 0.3.7 dated 2026-03-31
Diff between glmmrOptim versions 0.3.7 dated 2026-03-31 and 0.5.1 dated 2026-06-07
glmmrOptim-0.3.7/glmmrOptim/inst |only glmmrOptim-0.5.1/glmmrOptim/DESCRIPTION | 13 glmmrOptim-0.5.1/glmmrOptim/MD5 | 25 glmmrOptim-0.5.1/glmmrOptim/R/R6designspace.R | 56 glmmrOptim-0.5.1/glmmrOptim/R/RcppExports.R | 14 glmmrOptim-0.5.1/glmmrOptim/build/partial.rdb |binary glmmrOptim-0.5.1/glmmrOptim/man/DesignSpace.Rd | 16 glmmrOptim-0.5.1/glmmrOptim/man/apportion.Rd | 98 - glmmrOptim-0.5.1/glmmrOptim/man/setParallelOptim.Rd | 42 glmmrOptim-0.5.1/glmmrOptim/src/RcppExports.cpp | 19 glmmrOptim-0.5.1/glmmrOptim/src/gd_search.cpp | 1156 +++++++++++++++++++- 11 files changed, 1248 insertions(+), 191 deletions(-)
Title: Fast and Stable Fitting of Generalized Linear Models using
'RcppEigen'
Description: Fits generalized linear models efficiently using 'RcppEigen'. The iteratively reweighted least squares
implementation utilizes the step-halving approach of Marschner (2011) <doi:10.32614/RJ-2011-012> to help safeguard
against convergence issues.
Author: Jared Huling [aut, cre],
Douglas Bates [cph],
Dirk Eddelbuettel [cph],
Romain Francois [cph],
Yixuan Qiu [cph],
Noah Greifer [ctb]
Maintainer: Jared Huling <jaredhuling@gmail.com>
Diff between fastglm versions 0.1.0 dated 2026-05-05 and 0.1.1 dated 2026-06-07
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Title: Nonlinear Mixed Effects Models in Population PK/PD, Extra
Support Functions
Description: Fit and compare nonlinear mixed-effects models in
differential equations with flexible dosing information commonly seen
in pharmacokinetics and pharmacodynamics (Almquist, Leander, and
Jirstrand 2015 <doi:10.1007/s10928-015-9409-1>). Differential equation
solving is by compiled C code provided in the 'rxode2' package (Wang,
Hallow, and James 2015 <doi:10.1002/psp4.12052>). This package is for
support functions like preconditioned fits
<doi:10.1208/s12248-016-9866-5>, boostrap and stepwise covariate
selection.
Author: Matthew Fidler [aut, cre] ,
Vipul Mann [aut],
Vishal Sarsani [aut] ,
Christian Bartels [ctb],
Bill Denney [aut] ,
Omar Elashkar [ctb]
Maintainer: Matthew Fidler <matthew.fidler@gmail.com>
Diff between nlmixr2extra versions 5.0.0 dated 2025-11-29 and 5.1.0 dated 2026-06-07
DESCRIPTION | 24 ++++--- MD5 | 96 +++++++++++++++++++++---------- NAMESPACE | 37 +++++++++++ NEWS.md | 13 ++++ R/SCM.R | 22 +++---- R/aaaNlmixr2ExtraCRAN.R |only R/bayesiancovsel.R | 8 +- R/computingutil.R | 15 +--- R/iivSearch.R |only R/knit_printEquation.R | 8 +- R/lassocov.R | 16 ++--- R/linearizefocei.R |only R/nlmixr2extra-package.R |only R/nlmixrFormula.R |only R/profile.R | 4 - R/resSearch.R |only R/rxUiLinearize.R |only R/zzz.R |only inst/iivSearch.R |only man/aaaNlmixr2ExtraCRAN.Rd |only man/adaptivelassoCoefficients.Rd | 4 - man/addAllEtas.Rd |only man/addCovariate.Rd |only man/addData2Rx.Rd |only man/adjustedlassoCoefficients.Rd | 4 - man/bootstrapFit.Rd | 4 - man/covarSearchAuto.Rd |only man/dot-nlmixrFormulaDataPrep.Rd |only man/dot-nlmixrFormulaExpandStartParam.Rd |only man/dot-nlmixrFormulaParser.Rd |only man/dot-nlmixrFormulaParserRanef.Rd |only man/dot-nlmixrFormulaSetupIniFixed.Rd |only man/dot-renameOrOverwrite.Rd |only man/extractEqHelper.if.Rd |only man/fixedControl.Rd | 12 +-- man/horseshoeSummardf.Rd | 4 - man/iivSearch.Rd |only man/isLinearizeMatch.Rd |only man/lassoCoefficients.Rd | 4 - man/lassoSummardf.Rd | 4 - man/linModGen.Rd |only man/linearize.Rd |only man/linearizeErrorLines.Rd |only man/linearizePlot.Rd |only man/llpControl.Rd | 12 +-- man/nlmixr2extra-package.Rd |only man/nlmixrFormula.Rd |only man/print.linIIVSearch.Rd |only man/profile.nlmixr2FitCore.Rd | 12 +-- man/profileFixed.Rd | 19 +----- man/profileLlp.Rd | 12 +-- man/profileNlmixr2FitCoreRet.Rd | 12 +-- man/reexports.Rd | 6 - man/regularmodel.Rd | 4 - man/rerunTopN.Rd |only man/resSearch.Rd |only src/Makevars.in | 2 src/preCondInv.cpp | 23 +++++-- tests/testthat/test-SCM-backwardSearch.R |only tests/testthat/test-bootstrap.R | 6 - tests/testthat/test-computing.R | 46 ++++++++++++++ tests/testthat/test-iivSearch.R |only tests/testthat/test-linearizefocei.R |only tests/testthat/test-nlmixrFormula.R |only tests/testthat/test-precondition.R | 2 tests/testthat/test-profile.R | 58 ++++-------------- tests/testthat/test-resSearch.R |only tests/testthat/test-safety.R |only 68 files changed, 299 insertions(+), 194 deletions(-)
Title: N-Power Fourier Deconvolution
Description: Provides tools for non-parametric Fourier deconvolution using the N-Power Fourier Deconvolution (NPFD) method. This package includes methods for density estimation (densprf()) and sample generation (createSample()), enabling users to perform statistical analyses on mixed or replicated data sets.
Author: Akin Anarat [aut, cre]
Maintainer: Akin Anarat <akin.anarat@hhu.de>
Diff between NPFD versions 1.0.0 dated 2024-11-04 and 1.0.1 dated 2026-06-07
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/deconvolve.R | 7 ++++++- build/vignette.rds |binary inst/doc/Introduction_to_NPFD.html | 9 +++++---- man/deconvolve.Rd | 12 +++++++++--- 6 files changed, 29 insertions(+), 17 deletions(-)
Title: Regression Coefficients Estimation Using the Generalized Cross
Entropy
Description: Estimation and inference using the Generalized Maximum Entropy (GME) and Generalized Cross Entropy (GCE) framework, a flexible method for solving ill-posed inverse problems and parameter estimation under uncertainty (Golan, Judge, and Miller (1996, ISBN:978-0471145925) "Maximum Entropy Econometrics: Robust Estimation with Limited Data"). The package includes routines for generalized cross entropy estimation of linear models including the implementation of a GME-GCE two steps approach. Diagnostic tools, and options to incorporate prior information through support and prior distributions are available (Macedo, Cabral, Afreixo, Macedo and Angelelli (2025) <doi:10.1007/978-3-031-97589-9_21>). In particular, support spaces can be defined by the user or be internally computed based on the ridge trace or on the distribution of standardized regression coefficients. Different optimization methods for the objective function can be used. An adaptation of the normalized entropy aggregation ( [...truncated...]
Author: Cabral Jorge [aut, cre] ,
Macedo Pedro [ths],
Afreixo Vera [ths]
Maintainer: Cabral Jorge <jorgecabral@ua.pt>
Diff between GCEstim versions 0.1.0 dated 2025-07-16 and 1.1.0 dated 2026-06-07
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GCEstim-1.1.0/GCEstim/inst/doc/V1_Quick_start.Rmd | 170 - GCEstim-1.1.0/GCEstim/inst/doc/V1_Quick_start.html | 827 +++---- GCEstim-1.1.0/GCEstim/inst/doc/V2_GME_framework.R | 271 +- GCEstim-1.1.0/GCEstim/inst/doc/V2_GME_framework.Rmd | 332 +- GCEstim-1.1.0/GCEstim/inst/doc/V2_GME_framework.html | 475 ++-- GCEstim-1.1.0/GCEstim/inst/doc/V3_GCE_framework.R | 22 GCEstim-1.1.0/GCEstim/inst/doc/V3_GCE_framework.Rmd | 61 GCEstim-1.1.0/GCEstim/inst/doc/V3_GCE_framework.html | 123 - GCEstim-1.1.0/GCEstim/inst/doc/V4_Optimization.R | 81 GCEstim-1.1.0/GCEstim/inst/doc/V4_Optimization.Rmd | 28 GCEstim-1.1.0/GCEstim/inst/doc/V4_Optimization.html | 367 +-- GCEstim-1.1.0/GCEstim/inst/doc/V5_Choosing_Supports.R | 241 +- GCEstim-1.1.0/GCEstim/inst/doc/V5_Choosing_Supports.Rmd | 204 + GCEstim-1.1.0/GCEstim/inst/doc/V5_Choosing_Supports.html | 754 +++--- GCEstim-1.1.0/GCEstim/inst/doc/V6_Two_steps_ME_estimation.R | 21 GCEstim-1.1.0/GCEstim/inst/doc/V6_Two_steps_ME_estimation.Rmd | 39 GCEstim-1.1.0/GCEstim/inst/doc/V6_Two_steps_ME_estimation.html | 169 - 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Title: Adaptive Dynamics and Community Matrix Model Projections
Description: Runs projections of groups of matrix projection models (MPMs),
allowing density dependence mechanisms to work across MPMs. This
package was developed to run both adaptive dynamics simulations
such as pairwise and multiple invasibility analyses, and community
projections in which species are represented by MPMs. All forms of
MPMs are allowed, including integral projection models (IPMs).
Author: Richard P. Shefferson [aut, cre]
Maintainer: Richard P. Shefferson <cdorm@g.ecc.u-tokyo.ac.jp>
Diff between adapt3 versions 2.0.7 dated 2026-02-13 and 2.0.9 dated 2026-06-07
DESCRIPTION | 10 +- MD5 | 38 +++++----- NEWS.md | 24 ++++++ R/RcppExports.R | 10 ++ R/adapt3-package.R | 4 - R/graphics.R | 2 R/utilities.R | 2 build/vignette.rds |binary inst/doc/comproj.html | 29 +++----- inst/doc/invasion.html | 61 ++++++++--------- inst/include/basic_funcs/main_utils.h | 119 ++++++++++++++++++++++++++++++++++ inst/include/basic_funcs/mats_utils.h | 64 ++++++++++++++++++ man/adapt3-package.Rd | 9 ++ man/batch_project3.Rd | 2 man/invade3.Rd | 2 man/plot.adaptInv.Rd | 2 man/project3.Rd | 6 + man/summary.adaptProjBatch.Rd | 2 src/projection.cpp | 65 ++++++++++++------ tests/testthat/test_project3_adv.R | 50 ++++++++++++++ 20 files changed, 404 insertions(+), 97 deletions(-)
Title: Working with and Analyzing Functional Data of Varying Lengths
Description: Comprehensive set of tools for analyzing and manipulating functional
data with non-uniform lengths. This package addresses two common scenarios in
functional data analysis: Variable Domain Data, where the observation domain
differs across samples, and Partially Observed Data, where observations are
incomplete over the domain of interest. 'VDPO' enhances the flexibility and
applicability of functional data analysis in 'R'.
See Amaro et al. (2024) <doi:10.48550/arXiv.2401.05839>,
Hernandez-Amaro et al. (2025) <doi:10.48550/arXiv.2510.26917>, and
Hernandez-Amaro et al. (2026) <doi:10.48550/arXiv.2605.03633>.
Author: Pavel Hernandez [aut, cre],
Jose Ignacio Diez [ctr],
Maria Durban [ctb],
Maria del Carmen Aguilera-Morillo [ctb]
Maintainer: Pavel Hernandez <pavel.amaro96@gmail.com>
Diff between VDPO versions 0.1.0 dated 2024-10-21 and 0.2.0 dated 2026-06-07
DESCRIPTION | 14 LICENSE | 4 MD5 | 108 - NAMESPACE | 48 NEWS.md | 24 R/B2XZG.R | 138 + R/VDPO-package.R |only R/XZG2theta.R | 114 + R/data_generator.R | 1791 ++++++++++++++++++++--- R/ffpo.R |only R/ffpo_2d.R |only R/ffvd.R | 580 +++---- R/mfpca_vd.R |only R/partial_inprod.R | 92 - R/plot.R | 232 ++ R/po_2d_fit.R |only R/po_fit.R |only R/sysdata.rda |only R/utils.R | 836 +++++----- R/vd_fit.R | 949 ++++++------ README.md | 8 build/partial.rdb |only build/vignette.rds |binary inst/CITATION |only inst/doc/VDPO-01-introduction.Rmd | 496 +++--- inst/doc/VDPO-01-introduction.html | 1311 ++++++++-------- inst/doc/VDPO-02-vd-models.Rmd | 294 +-- inst/doc/VDPO-02-vd-models.html | 1021 ++++++------- inst/doc/VDPO-03-pofd.Rmd |only inst/doc/VDPO-03-pofd.html |only inst/doc/VDPO-04-vd-mfpca.Rmd |only inst/doc/VDPO-04-vd-mfpca.html |only man/VDPO-package.Rd |only man/add_grid.Rd |only man/adjust_proportion.Rd |only man/data_generator_po_1d.Rd |only man/data_generator_po_2d.Rd |only man/data_generator_vd.Rd | 172 +- man/ffpo.Rd |only man/ffpo_2d.Rd |only man/ffvd.Rd | 104 - man/mfpca_vd.Rd |only man/plot.mfpca_vd.Rd |only man/plot_ci.Rd |only man/po_2d_fit.Rd |only man/po_fit.Rd |only man/vd_fit.Rd | 152 - tests/testthat.R | 24 tests/testthat/helper-partial_inprod.R | 120 - tests/testthat/test-mfpca_vd.R |only tests/testthat/test-partial_inprod.R | 98 - tests/testthat/test-po_2d_fit.R |only tests/testthat/test-po_fit.R |only tests/testthat/test-utils.R | 26 tests/testthat/test-vd_fit.R | 246 +-- vignettes/VDPO-01-introduction.Rmd | 496 +++--- vignettes/VDPO-02-vd-models.Rmd | 294 +-- vignettes/VDPO-03-pofd.Rmd |only vignettes/VDPO-04-vd-mfpca.Rmd |only vignettes/includes/VDPO-01-unnamed-chunk-3-1.png |binary vignettes/includes/VDPO-01-unnamed-chunk-4-1.png |binary vignettes/includes/VDPO-02-unnamed-chunk-9-1.png |binary vignettes/includes/VDPO-03-unnamed-chunk-6-1.png |only vignettes/includes/VDPO-03-unnamed-chunk-7-1.png |only vignettes/includes/VDPO-04-unnamed-chunk-4-1.png |only vignettes/includes/VDPO-04-unnamed-chunk-5-1.png |only vignettes/includes/VDPO-04-unnamed-chunk-6-1.png |only vignettes/includes/VDPO-04-unnamed-chunk-7-1.png |only vignettes/includes/VDPO-04-unnamed-chunk-8-1.png |only vignettes/includes/VDPO-04-unnamed-chunk-9-1.png |only vignettes/precompile.R | 20 vignettes/source/_VDPO-01-introduction.Rmd | 494 +++--- vignettes/source/_VDPO-02-vd-model.Rmd | 248 +-- vignettes/source/_VDPO-03-pofd.Rmd |only vignettes/source/_VDPO-04-vd-mfpca.Rmd |only 75 files changed, 6201 insertions(+), 4353 deletions(-)
Title: Get Spanish Origin-Destination Data
Description: Gain seamless access to origin-destination (OD) data from the
Spanish Ministry of Transport, hosted at
<https://www.transportes.gob.es/ministerio/proyectos-singulares/estudios-de-movilidad-con-big-data/opendata-movilidad>.
This package simplifies the management of these large datasets by
providing tools to download zone boundaries, handle associated
origin-destination data, and process it efficiently with the 'duckdb'
database interface. Local caching minimizes repeated downloads,
streamlining workflows for researchers and analysts. Methods
described in Kotov et al. (2026) <doi:10.1177/23998083251415040>.
Extensive documentation is available at
<https://ropenspain.github.io/spanishoddata/index.html>, offering
guides on creating static and dynamic mobility flow visualizations and
transforming large datasets into analysis-ready formats.
Author: Egor Kotov [aut, cre] ,
Robin Lovelace [aut] ,
Eugeni Vidal-Tortosa [ctb]
Maintainer: Egor Kotov <kotov.egor@gmail.com>
Diff between spanishoddata versions 0.2.5 dated 2026-05-26 and 0.2.6 dated 2026-06-07
DESCRIPTION | 6 - MD5 | 38 ++++----- NEWS.md | 6 + R/available-data.R | 92 ++++++++++++++-------- R/download_data.R | 7 + R/internal-utils.R | 11 ++ README.md | 6 + build/partial.rdb |binary inst/doc/convert.html | 2 inst/doc/quick-get.html | 2 inst/doc/v1-2020-2021-mitma-data-codebook.html | 2 inst/doc/v2-2022-onwards-mitma-data-codebook.html | 2 inst/schemaorg.json | 2 man/spod_get_v1_meta_path.Rd |only tests/testthat/test-check-files.R | 3 tests/testthat/test-cite.R | 3 tests/testthat/test-download.R | 3 tests/testthat/test-duckdb-helpers-coverage.R | 5 - tests/testthat/test-live-integration.R | 3 tests/testthat/test-quick-get-internals.R | 2 tests/testthat/test-regression-v1-meta.R |only 21 files changed, 120 insertions(+), 75 deletions(-)
Title: Another Approach to Package Installation
Description: The goal of 'pak' is to make package installation faster and
more reliable. In particular, it performs all HTTP operations in
parallel, so metadata resolution and package downloads are fast.
Metadata and package files are cached on the local disk as well. 'pak'
has a dependency solver, so it finds version conflicts before
performing the installation. This version of 'pak' supports CRAN,
'Bioconductor' and 'GitHub' packages as well.
Author: Gabor Csardi [aut, cre],
Jim Hester [aut],
Posit Software, PBC [cph, fnd] ,
Winston Chang [ctb] ,
Ascent Digital Services [cph, fnd] ,
Hadley Wickham [ctb, cph] ,
Jeroen Ooms [ctb] ,
Maelle Salmon [ctb] ,
Duncan Temple Lang [ctb] ,
Lloyd Hilaiel [cph [...truncated...]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between pak versions 0.9.5 dated 2026-04-27 and 0.10.0 dated 2026-06-07
DESCRIPTION | 16 MD5 | 389 +++++++++++------ NAMESPACE | 3 NEWS.md | 4 R/assertthat.R |only R/auth.R | 2 R/config.R |only R/confirmation.R | 3 R/dev-mode.R | 6 R/embed.R | 15 R/global-handler.R | 4 R/library.R | 12 R/local.R | 11 R/lockfile.R | 4 R/onload.R | 1 R/package.R | 18 R/pak-errors.R |only R/pak-package.R | 5 R/pak-update.R | 6 R/ppm-sso.R |only R/push-packages.R | 13 R/subprocess.R | 17 R/sysreqs.R | 6 R/sysreqsdocs.R | 4 R/utils.R | 4 R/zzz-pak-config.R |only inst/COPYRIGHTS | 12 man/chunks/auth.Rmd | 48 ++ man/lib_status.Rd | 22 man/local_deps.Rd | 12 man/local_deps_explain.Rd | 12 man/local_install.Rd | 14 man/local_install_deps.Rd | 14 man/local_install_dev_deps.Rd | 14 man/local_package_trees.Rd | 14 man/local_system_requirements.Rd | 4 man/lockfile_create.Rd | 4 man/lockfile_install.Rd | 6 man/pak-package.Rd | 1 man/pak.Rd | 30 - man/pak_cleanup.Rd | 4 man/pak_sitrep.Rd | 4 man/pkg_deps.Rd | 18 man/pkg_deps_tree.Rd | 18 man/pkg_download.Rd | 18 man/pkg_install.Rd | 20 man/pkg_name_check.Rd | 12 man/pkg_remove.Rd | 20 man/pkg_status.Rd | 20 man/pkg_sysreqs.Rd | 34 - man/ppm_has_binaries.Rd | 12 man/ppm_platforms.Rd | 12 man/ppm_r_versions.Rd | 12 man/ppm_repo_url.Rd | 12 man/ppm_snapshots.Rd | 12 man/ppm_sso_login.Rd |only man/repo-auth.Rd | 76 ++- man/repo_add.Rd | 6 man/repo_auth.Rd | 4 man/repo_auth_key_get.Rd | 4 man/repo_get.Rd | 6 man/repo_status.Rd | 6 man/sysreqs_check_installed.Rd | 22 man/sysreqs_db_list.Rd | 18 man/sysreqs_db_match.Rd | 18 man/sysreqs_db_update.Rd | 16 man/sysreqs_is_supported.Rd | 18 man/sysreqs_list_system_packages.Rd | 18 man/sysreqs_platforms.Rd | 18 man/system_r_platform.Rd | 4 src/dummy/tsitter |only src/dummy/tstoml |only src/dummy/yaml |only src/install-embedded.R | 23 - src/library/pkgcache/DESCRIPTION | 8 src/library/pkgcache/NAMESPACE | 6 src/library/pkgcache/NEWS.md | 10 src/library/pkgcache/R/aa-assertthat.R | 18 src/library/pkgcache/R/aaa-async.R | 369 +++++++++++----- src/library/pkgcache/R/aaa-rstudio-detect.R | 16 src/library/pkgcache/R/archive.R | 85 ++- src/library/pkgcache/R/async-http.R | 8 src/library/pkgcache/R/auth.R | 55 ++ src/library/pkgcache/R/bioc.R | 82 ++- src/library/pkgcache/R/cran-app.R | 27 - src/library/pkgcache/R/data-frame.R | 4 src/library/pkgcache/R/errors.R | 91 ++- src/library/pkgcache/R/installed.R | 20 src/library/pkgcache/R/iso-date.R | 4 src/library/pkgcache/R/metadata-cache.R | 225 +++++++-- src/library/pkgcache/R/onload.R | 2 src/library/pkgcache/R/package-cache.R | 23 - src/library/pkgcache/R/platform-linux.R | 20 src/library/pkgcache/R/ppm-sso-app.R |only src/library/pkgcache/R/ppm-sso.R |only src/library/pkgcache/R/ppm.R | 8 src/library/pkgcache/R/progress-bar.R | 3 src/library/pkgcache/R/repo-set.R | 24 - src/library/pkgcache/R/repo-status.R | 4 src/library/pkgcache/R/utils.R | 30 + src/library/pkgcache/inst/WORDLIST | 3 src/library/pkgcache/inst/fixtures/bioc-config.yaml | 19 src/library/pkgcache/src/init.c | 2 src/library/pkgcache/src/pkgcache.h | 2 src/library/pkgcache/src/rand.c |only src/library/pkgdepends/DESCRIPTION | 4 src/library/pkgdepends/R/builder.R | 4 src/library/pkgdepends/R/docs.R | 4 src/library/pkgdepends/R/download.R | 3 src/library/pkgdepends/R/errors.R | 36 - src/library/pkgdepends/R/git-auth.R | 12 src/library/pkgdepends/R/git-protocol.R | 14 src/library/pkgdepends/R/install-binary.R | 4 src/library/pkgdepends/R/install-plan.R | 4 src/library/pkgdepends/R/install-tar.R | 5 src/library/pkgdepends/R/pkg-dependencies.R | 22 src/library/pkgdepends/R/pkg-downloads.R | 4 src/library/pkgdepends/R/pkg-installation.R | 6 src/library/pkgdepends/R/pkg-lockfile.R | 6 src/library/pkgdepends/R/pkg-plan.R | 23 - src/library/pkgdepends/R/solve.R | 15 src/library/pkgdepends/R/sysreqs.R | 9 src/library/pkgdepends/R/sysreqsdocs.R | 4 src/library/pkgdepends/R/type-installed.R | 4 src/library/pkgdepends/R/zzz-pkgdepends-config.R | 16 src/library/pkgdepends/inst/WORDLIST | 8 src/library/pkgdepends/inst/docs/download-result.rds |binary src/library/pkgdepends/inst/docs/pak-config-docs.rds |binary src/library/pkgdepends/inst/docs/pkg-refs.rds |binary src/library/pkgdepends/inst/docs/resolution-result.rds |binary src/library/tsitter |only src/library/tsitter.patch |only src/library/tstoml |only src/library/tstoml.patch |only tests/testthat/test-dummy-packages.R |only tests/testthat/test-library.R |only tests/testthat/test-ppm-sso.R |only 137 files changed, 1800 insertions(+), 810 deletions(-)
Title: Kernel Density Estimation for Random Symmetric Positive Definite
Matrices
Description: Kernel smoothing for Wishart random matrices described in Daayeb, Khardani and Ouimet (2025) <doi:10.48550/arXiv.2506.08816>, Gaussian and log-Gaussian models using least square or likelihood cross validation criteria for optimal bandwidth selection.
Author: Leo Belzile [aut, cre] ,
Frederic Ouimet [aut]
Maintainer: Leo Belzile <belzilel@gmail.com>
Diff between ksm versions 1.0 dated 2025-10-28 and 1.1 dated 2026-06-07
DESCRIPTION | 11 - MD5 | 43 ++-- NAMESPACE | 2 NEWS.md |only R/RcppExports.R | 70 +++++- R/helpers.R | 74 +++++-- build |only inst/doc |only inst/tinytest/Wishart_tests.R | 440 +++++++++++++++++++++--------------------- inst/tinytest/ksm_tests.R |only man/bandwidth_optim.Rd | 12 + man/lcv_kdens_symmat.Rd | 9 man/lcv_kern_Wishart.Rd | 6 man/lcv_kern_smlnorm.Rd | 6 man/lcv_kern_smnorm.Rd | 6 man/lscv_kdens_symmat.Rd |only man/lscv_kern_Wishart.Rd | 2 man/lscv_kern_smlnorm.Rd | 2 man/lscv_kern_smnorm.Rd |only man/rWAR.Rd | 2 src/Makevars | 1 src/Makevars.win | 1 src/RcppExports.cpp | 69 ++++-- src/functions.cpp | 229 +++++++++++++++++---- vignettes |only 25 files changed, 633 insertions(+), 352 deletions(-)
Title: Browser-Native 'WebGL' Rendering for R Graphics
Description: Provides browser-native 'WebGL' rendering for R graphics through
'htmlwidgets'. The package supports grammar-style graphics workflows and
renderer-ready specifications for dense analytical and scientific scenes,
including point, line, trajectory, raster, vector, mesh, and surface
layers, shader-driven display modes, timeline controls, structured views,
selection metadata, and publication-oriented static export helpers.
Rendering stays in the browser, and the core package remains
cross-platform without requiring 'CUDA', 'Metal', or 'OpenCL' toolchains.
Author: Frederic Bertrand [cre, aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between ggWebGL versions 0.4.0 dated 2026-05-04 and 0.8.0 dated 2026-06-07
DESCRIPTION | 15 MD5 | 305 NAMESPACE | 41 NEWS.md | 64 R/adapter-boids4r.R |only R/adapter-primitives.R | 479 R/adapter-xgeo-state.R | 26 R/as-mesh-webgl.R |only R/coord-webgl-3d.R |only R/export-static.R | 39 R/geom-mesh-webgl.R |only R/geom-surface-webgl.R |only R/geoms-webgl.R | 1419 ++ R/ggWebGL-package.R | 4 R/interaction-spec.R |only R/lod-utils.R |only R/mesh-utils.R |only R/payload-compact.R |only R/polygon-utils.R |only R/scale-mesh-webgl.R |only R/scene-builders.R |only R/scene-serialize.R |only R/shiny-timeline.R |only R/stat-surface-webgl.R |only R/surface-utils.R |only R/theme-webgl.R | 38 R/timeline-webgl.R |only R/utils.R | 546 R/webgl-spec.R |only R/widget.R | 1210 +- build/vignette.rds |binary inst/_pkgdown.yml | 10 inst/benchmarks/benchmark-scene-types.R |only inst/benchmarks/benchmark-suite.R | 90 inst/doc/boids4r-animation.R | 27 inst/doc/boids4r-animation.Rmd | 105 inst/doc/boids4r-animation.html | 203 inst/doc/boids4r-custom-workflow.R |only inst/doc/boids4r-custom-workflow.Rmd |only inst/doc/boids4r-custom-workflow.html |only inst/doc/boids4r-scenarios-2d.R |only inst/doc/boids4r-scenarios-2d.Rmd |only inst/doc/boids4r-scenarios-2d.html |only inst/doc/boids4r-scenarios-3d.R |only inst/doc/boids4r-scenarios-3d.Rmd |only inst/doc/boids4r-scenarios-3d.html |only inst/doc/ggplot-coverage-3d.R |only inst/doc/ggplot-coverage-3d.Rmd |only inst/doc/ggplot-coverage-3d.html |only inst/doc/ggplot-coverage-core.R |only inst/doc/ggplot-coverage-core.Rmd |only inst/doc/ggplot-coverage-core.html |only inst/doc/ggplot-coverage-summaries.R |only inst/doc/ggplot-coverage-summaries.Rmd |only inst/doc/ggplot-coverage-summaries.html |only inst/doc/ggplot-coverage.R |only inst/doc/ggplot-coverage.Rmd |only inst/doc/ggplot-coverage.html |only inst/doc/interactive-benchmarks.R |only inst/doc/interactive-benchmarks.Rmd |only inst/doc/interactive-benchmarks.html |only inst/doc/real-data-evidence.R |only inst/doc/real-data-evidence.Rmd |only inst/doc/real-data-evidence.html |only inst/doc/renderer-capabilities.R |only inst/doc/renderer-capabilities.Rmd |only inst/doc/renderer-capabilities.html |only inst/doc/renderer-showcase-examples.R |only inst/doc/renderer-showcase-examples.Rmd |only inst/doc/renderer-showcase-examples.html |only inst/doc/surface-mesh-showcase.R |only inst/doc/surface-mesh-showcase.Rmd |only inst/doc/surface-mesh-showcase.html |only inst/doc/temporal-trajectories.R |only inst/doc/temporal-trajectories.Rmd |only inst/doc/temporal-trajectories.html |only inst/doc/xgeortr-bridge.R | 13 inst/doc/xgeortr-bridge.Rmd | 21 inst/doc/xgeortr-bridge.html | 9554 +++++++++++++++- inst/examples/htmlwidget/downstream-boids4r-animation.R | 133 inst/examples/htmlwidget/future-work-gallery.R | 2 inst/examples/htmlwidget/million-point-embedding.R |only inst/examples/htmlwidget/performance-500k-smoke-test.R |only inst/examples/htmlwidget/surface-gallery.R |only inst/examples/htmlwidget/surface-volcano.R |only inst/examples/htmlwidget/temporal-trajectories.R |only inst/examples/htmlwidget/workflow-comparison.R |only inst/examples/htmlwidget/xgeortr-bridge-gallery.R | 15 inst/examples/shiny/interaction-demo.R |only inst/examples/shiny/interactive-scene-demo.R |only inst/examples/shiny/surface-demo.R |only inst/examples/shiny/timeline-control-demo.R |only inst/htmlwidgets/ggWebGL.css | 41 inst/htmlwidgets/ggWebGL.js | 3739 +++++- inst/htmlwidgets/ggWebGL.yaml | 17 inst/htmlwidgets/lib |only inst/specs |only inst/www/shaders/default.frag.glsl | 3 inst/www/shaders/lines |only inst/www/shaders/mesh |only inst/www/shaders/points |only inst/www/shaders/primitive3d.vert.glsl |only inst/www/shaders/raster |only inst/www/shaders/surface |only man/animation_spec.Rd |only man/as_ggwebgl_spec.xgeo_state.Rd | 22 man/as_mesh_webgl.Rd |only man/coord_webgl_3d.Rd |only man/geom_area_webgl.Rd |only man/geom_bar_webgl.Rd |only man/geom_bin2d_webgl.Rd |only man/geom_boxplot_webgl.Rd |only man/geom_contour_webgl.Rd |only man/geom_crossbar_webgl.Rd |only man/geom_density2d_webgl.Rd |only man/geom_density_webgl.Rd |only man/geom_errorbar_webgl.Rd |only man/geom_freqpoly_webgl.Rd |only man/geom_histogram_webgl.Rd |only man/geom_label_webgl.Rd |only man/geom_linerange_webgl.Rd |only man/geom_mesh_webgl.Rd | 16 man/geom_path3d_webgl.Rd |only man/geom_path_webgl.Rd |only man/geom_pointrange_webgl.Rd |only man/geom_polygon_webgl.Rd |only man/geom_rect_webgl.Rd |only man/geom_ribbon_webgl.Rd |only man/geom_rug_webgl.Rd |only man/geom_segment_webgl.Rd |only man/geom_surface_webgl.Rd | 38 man/geom_text_webgl.Rd |only man/geom_tile_webgl.Rd |only man/geom_violin_webgl.Rd |only man/ggwebgl_interactions.Rd |only man/ggwebgl_layer_mesh.Rd | 15 man/ggwebgl_layer_surface.Rd | 53 man/ggwebgl_material.Rd | 10 man/ggwebgl_mesh.Rd |only man/ggwebgl_spec.Rd | 4 man/ggwebgl_timeline.Rd | 16 man/ggwebgl_transport.Rd |only man/scale_time_webgl.Rd |only man/stat_surface_webgl.Rd |only man/surface_matrix.Rd |only man/theme_webgl.Rd | 28 man/updateGgWebGLTimeline.Rd |only man/webgl_spec.Rd |only tests/testthat/Rplots.pdf |binary tests/testthat/helper-browser-ready.R |only tests/testthat/helper-paths.R |only tests/testthat/test-annotation-webgl.R |only tests/testthat/test-api-scaffold.R | 128 tests/testthat/test-bar-histogram-webgl.R |only tests/testthat/test-bin2d-webgl.R |only tests/testthat/test-boxplot-webgl.R |only tests/testthat/test-contour-webgl.R |only tests/testthat/test-coordinate-facets.R |only tests/testthat/test-cran-self-containment.R | 35 tests/testthat/test-crossbar-webgl.R |only tests/testthat/test-documentation-claims.R |only tests/testthat/test-downstream-boids4r-example.R | 350 tests/testthat/test-freqpoly-density-webgl.R |only tests/testthat/test-future-work-roadmap.R | 43 tests/testthat/test-geom-registry.R |only tests/testthat/test-interaction-runtime.R | 11 tests/testthat/test-interaction-spec.R |only tests/testthat/test-js-timeline-state.R |only tests/testthat/test-mesh-webgl.R |only tests/testthat/test-milestone9-demos.R |only tests/testthat/test-path-webgl.R |only tests/testthat/test-path3d-webgl.R |only tests/testthat/test-performance-500k-smoke.R |only tests/testthat/test-polygon-webgl.R |only tests/testthat/test-range-error-webgl.R |only tests/testthat/test-rd-example-coverage.R | 24 tests/testthat/test-real-data-and-benchmarks.R | 4 tests/testthat/test-rect-tile-webgl.R |only tests/testthat/test-rects-webgl.R |only tests/testthat/test-render-schema-v2.R |only tests/testthat/test-renderer-contract.R | 15 tests/testthat/test-ribbon-area-webgl.R |only tests/testthat/test-segment-webgl.R |only tests/testthat/test-shader-registry.R |only tests/testthat/test-shiny-timeline.R |only tests/testthat/test-static-export.R | 47 tests/testthat/test-surface-webgl.R |only tests/testthat/test-timeline-metadata.R |only tests/testthat/test-trajectory-examples.R |only tests/testthat/test-trajectory-shaders.R |only tests/testthat/test-transport-lod.R |only tests/testthat/test-violin-webgl.R |only tests/testthat/test-widget-layout.R | 224 vignettes/boids4r-animation.Rmd | 105 vignettes/boids4r-custom-workflow.Rmd |only vignettes/boids4r-scenarios-2d.Rmd |only vignettes/boids4r-scenarios-3d.Rmd |only vignettes/ggplot-coverage-3d.Rmd |only vignettes/ggplot-coverage-core.Rmd |only vignettes/ggplot-coverage-summaries.Rmd |only vignettes/ggplot-coverage.Rmd |only vignettes/interactive-benchmarks.Rmd |only vignettes/real-data-evidence.Rmd |only vignettes/renderer-capabilities.Rmd |only vignettes/renderer-showcase-examples.Rmd |only vignettes/surface-mesh-showcase.Rmd |only vignettes/temporal-trajectories.Rmd |only vignettes/xgeortr-bridge.Rmd | 21 208 files changed, 18051 insertions(+), 1317 deletions(-)
Title: Friendly Input-Output Analysis
Description: Simplifies the process of economic input-output analysis by combining
user-friendly interfaces with high-performance computation. It provides tools
for analyzing both single-region and multi-regional economic systems through a
hybrid architecture that pairs R's accessibility with Rust's computational efficiency.
Author: Alberson da Silva Miranda [aut, cre, cph] ,
Celso Bissoli Sessa [dtc]
Maintainer: Alberson da Silva Miranda <albersonmiranda@hotmail.com>
Diff between fio versions 1.0.0 dated 2026-02-27 and 1.1.0 dated 2026-06-07
DESCRIPTION | 8 MD5 | 30 - NEWS.md | 7 R/download_wiod.R | 2 R/miom.R | 89 +-- README.md | 32 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/getting_started.html | 3 inst/doc/multiregional_analysis.R |only inst/doc/multiregional_analysis.Rmd |only inst/doc/multiregional_analysis.html |only man/download_wiod.Rd | 2 man/iom.Rd | 950 +++++++++++++++++------------------ man/miom.Rd | 424 ++++++++------- tests/testthat/_snaps/miom.md | 35 - tests/testthat/test-miom.R | 25 vignettes/multiregional_analysis.Rmd |only 18 files changed, 814 insertions(+), 793 deletions(-)
Title: Descriptive 3D Multidimensional Item Response Theory Modeling
Description: For identifying, estimating, and plotting descriptive multidimensional item response theory models, restricted to 3D and dichotomous or polytomous data that fit the two-parameter logistic model or the graded response model. The method is primarily exploratory and centered on the plot function, which exposes item characteristics and constructs, represented by vector arrows, within a three-dimensional interactive latent space. The results can be useful for item-level analysis as well as test development.
Author: Erik Forsberg [aut, cre, cph]
Maintainer: Erik Forsberg <forsbergpsychometrics@gmail.com>
Diff between D3mirt versions 2.0.4 dated 2024-06-22 and 2.0.5 dated 2026-06-07
D3mirt-2.0.4/D3mirt/tests/testthat/test-D3mirt-CRAN.R |only D3mirt-2.0.4/D3mirt/tests/testthat/test-modid-CRAN.R |only D3mirt-2.0.5/D3mirt/DESCRIPTION | 19 - D3mirt-2.0.5/D3mirt/MD5 | 42 +- D3mirt-2.0.5/D3mirt/NEWS.md | 8 D3mirt-2.0.5/D3mirt/R/D3mirt.R | 29 + D3mirt-2.0.5/D3mirt/R/plotD3mirt.R | 173 +++++++---- D3mirt-2.0.5/D3mirt/R/summaryD3mirt.R | 32 +- D3mirt-2.0.5/D3mirt/README.md | 265 +++++++++--------- D3mirt-2.0.5/D3mirt/build/vignette.rds |binary D3mirt-2.0.5/D3mirt/inst/CITATION | 4 D3mirt-2.0.5/D3mirt/inst/doc/IntrotoD3mirt.pdf |binary D3mirt-2.0.5/D3mirt/inst/doc/IntrotoD3mirt.pdf.asis | 2 D3mirt-2.0.5/D3mirt/inst/extdata/mod1.RData |binary D3mirt-2.0.5/D3mirt/inst/extdata/mod2.RData |binary D3mirt-2.0.5/D3mirt/inst/extdata/mod3.RData |binary D3mirt-2.0.5/D3mirt/inst/extdata/mod4.RData |binary D3mirt-2.0.5/D3mirt/man/D3mirt.Rd | 4 D3mirt-2.0.5/D3mirt/man/plot.D3mirt.Rd | 34 +- D3mirt-2.0.5/D3mirt/tests/testthat.R | 1 D3mirt-2.0.5/D3mirt/tests/testthat/_snaps |only D3mirt-2.0.5/D3mirt/tests/testthat/test-D3mirt.R |only D3mirt-2.0.5/D3mirt/tests/testthat/test-modid.R |only D3mirt-2.0.5/D3mirt/vignettes/IntrotoD3mirt.pdf.asis | 2 24 files changed, 359 insertions(+), 256 deletions(-)
Title: Multi-Context Colocalization Analysis for QTL and GWAS Studies
Description: A multi-task learning approach to variable selection regression with highly correlated predictors and sparse effects,
based on frequentist statistical inference. It provides statistical evidence to identify which subsets of predictors have non-zero
effects on which subsets of response variables, motivated and designed for colocalization analysis across genome-wide association studies (GWAS)
and quantitative trait loci (QTL) studies.
The ColocBoost model is described in Cao et. al. (2025) <doi:10.1101/2025.04.17.25326042>.
Author: Xuewei Cao [cre, aut, cph],
Haochen Sun [aut, cph],
Ru Feng [aut, cph],
Daniel Nachun [aut, cph],
Kushal Dey [aut, cph],
Gao Wang [aut, cph]
Maintainer: Xuewei Cao <xc2270@cumc.columbia.edu>
Diff between colocboost versions 1.0.7 dated 2025-11-22 and 1.0.8 dated 2026-06-07
DESCRIPTION | 8 MD5 | 106 +- NAMESPACE | 4 R/colocboost.R | 238 ++++- R/colocboost_assemble.R | 12 R/colocboost_assemble_cos.R | 29 R/colocboost_assemble_ucos.R | 12 R/colocboost_check_update_jk.R | 67 + R/colocboost_inference.R | 281 +++++- R/colocboost_init.R | 145 ++- R/colocboost_one_causal.R | 6 R/colocboost_output.R | 459 ++++++++++- R/colocboost_plot.R | 15 R/colocboost_update.R | 119 +- R/colocboost_utils.R | 139 +-- R/colocboost_workhorse.R | 4 inst/WORDLIST | 11 inst/benchmark |only inst/doc/ColocBoost_Update.html | 2 inst/doc/ColocBoost_Wrapper_Pipeline.R | 22 inst/doc/ColocBoost_Wrapper_Pipeline.Rmd | 60 + inst/doc/ColocBoost_Wrapper_Pipeline.html | 363 +++++--- inst/doc/FineBoost_Special_Case.Rmd | 4 inst/doc/FineBoost_Special_Case.html | 51 - inst/doc/Individual_Level_Colocalization.html | 31 inst/doc/Input_Data_Format.Rmd | 2 inst/doc/Input_Data_Format.html | 10 inst/doc/Interpret_ColocBoost_Output.html | 29 inst/doc/LD_Free_Colocalization.html | 48 - inst/doc/Partial_Overlap_Variants.Rmd | 2 inst/doc/Partial_Overlap_Variants.html | 29 inst/doc/Summary_Statistics_Colocalization.R | 21 inst/doc/Summary_Statistics_Colocalization.Rmd | 40 inst/doc/Summary_Statistics_Colocalization.html | 307 ++++--- inst/doc/Visualization_ColocBoost_Output.html | 4 inst/doc/announcements.Rmd | 8 inst/doc/announcements.html | 18 man/colocboost.Rd | 19 man/colocboost_validate_input_data.Rd | 21 man/get_ambiguous_colocalization.Rd | 3 man/get_colocboost_summary.Rd | 3 man/get_robust_colocalization.Rd | 11 man/get_robust_ucos.Rd |only tests/testthat/helper-plot-device.R |only tests/testthat/test_RE.R |only tests/testthat/test_Xref.R |only tests/testthat/test_inference.R | 991 +++++++++++++++++++++++- tests/testthat/test_model.R | 1 tests/testthat/test_optimization_phase1.R |only tests/testthat/test_sumstats.R | 182 ++++ tests/testthat/test_utils.R | 1 vignettes/ColocBoost_Wrapper_Pipeline.Rmd | 60 + vignettes/FineBoost_Special_Case.Rmd | 4 vignettes/Input_Data_Format.Rmd | 2 vignettes/Partial_Overlap_Variants.Rmd | 2 vignettes/Summary_Statistics_Colocalization.Rmd | 40 vignettes/announcements.Rmd | 8 57 files changed, 3229 insertions(+), 825 deletions(-)
Title: Functional Utilities for Data Processing
Description: Covers several areas of data processing: batch-splitting, reading and writing of large
data files, data tiling, one-hot encoding and decoding of data tiles, stratified proportional
(random or probabilistic) data sampling, data normalization and thresholding, substring location
and commonalities inside strings, and location and tabulation of amino acids, modifications or
associated monoisotopic masses inside modified peptides. The extractor implements code from
'Matrix.utils', Varrichio C (2020), <https://cran.r-project.org/package=Matrix.utils>.
Author: Dragos Bandur [aut, cre]
Maintainer: Dragos Bandur <dbandur@sympatico.ca>
Diff between akin versions 0.3.3 dated 2026-05-19 and 0.3.6 dated 2026-06-07
DESCRIPTION | 16 ++++---- MD5 | 34 ++++++++--------- NAMESPACE | 56 ++++++++++++++--------------- NEWS.md | 23 +++++++++++ R/akin-package.R | 16 ++++---- R/cover.R | 96 +++++++++++++++++++++++++------------------------- R/fcommon.R | 64 +++++++++++++++------------------ R/findLoc.R | 30 ++++++++------- R/plot.R | 18 +++++---- R/stratified_sample.R | 12 +++--- R/utils.R | 31 ++++++++++++---- R/zzz.R | 1 man/akin-defunct.Rd | 28 +++++++------- man/akin-package.Rd | 16 ++++---- man/cover.Rd | 60 +++++++++++++++---------------- man/fcommon.Rd | 19 +++++---- man/findLoc.Rd | 4 +- man/stratify.Rd | 10 ++--- 18 files changed, 288 insertions(+), 246 deletions(-)
Title: Triangulation of Irregularly Spaced Data
Description: A constrained two-dimensional Delaunay triangulation package
providing both triangulation and generation of voronoi mosaics of
irregular spaced data.
Please note that most of the functions are now also covered in package
interp, which is a re-implementation from scratch under a free license
based on a different triangulation algorithm.
Author: Albrecht Gebhardt [aut, cre, cph] ,
R. J. Renka [aut] ,
Stephen Eglen [aut, cph] ,
Sergej Zuyev [aut, cph] ,
Denis White [aut, cph]
Maintainer: Albrecht Gebhardt <albrecht.gebhardt@aau.at>
Diff between tripack versions 1.3-9.3 dated 2025-06-02 and 1.3-9.4 dated 2026-06-07
DESCRIPTION | 8 MD5 | 8 src/dsos.f | 1018 +--------------------------------------------------------- src/tripack.f | 849 ------------------------------------------------ src/troutp.f | 12 5 files changed, 52 insertions(+), 1843 deletions(-)
Title: Log-Gaussian Cox Process Models with Approximations
Description: Supports modelling case data to facilitate. The package provides automated computational grid generation over
an area of interest with methods to map covariates between geographies, model fitting including spatially aggregated case counts,
and predictions and visualisation. Monte Carlo maximum likelihood is the main fitting method with a low-rank approximation for Gaussian processes
described by Solin and Särkkä (2020) <doi:10.1007/s11222-019-09886-w> and a stochastic partial differential equation approximation. Bayesian methods
are also provided for some methods. Log-Gaussian Cox Processes are described by
Diggle et al. (2013) <doi:10.1214/13-STS441>.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <s.i.watson@bham.ac.uk>
This is a re-admission after prior archival of version 1.0.2 dated 2026-04-30
Diff between rts2 versions 1.0.2 dated 2026-04-30 and 1.0.3 dated 2026-06-07
DESCRIPTION | 21 ++++++++++----------- MD5 | 12 ++++++------ R/RcppExports.R | 4 ++++ R/griddata_class.R | 25 +++++++++++++++---------- build/partial.rdb |binary src/RcppExports.cpp | 13 +++++++++++++ src/region_model.cpp | 19 +++++++++++++++++++ 7 files changed, 67 insertions(+), 27 deletions(-)
Title: Spatial Data of Road Precariousness in Brazil
Description: Fornece acesso eficiente à malha espacial de precariedade
viária brasileira. O pacote realiza o download em cache e a
leitura otimizada (via Apache Arrow) de arquivos Parquet
particionados, contendo o cruzamento de variáveis de
infraestrutura do Entorno do Censo Demográfico 2022 (IBGE)
com a malha viária aberta do Overture Maps.
[English] Provides efficient access to the spatial network of
road precariousness in Brazil. The package performs cached
downloads and optimized reading (via Apache Arrow) of partitioned
Parquet files. These files contain the intersection of infrastructure
variables from the 2022 Demographic Census (IBGE) with the open
street network from Overture Maps. Methodology and datasets are
detailed in Passos (2026) <doi:10.5281/zenodo.19711448>.
Author: Iara Passos [aut, cre]
Maintainer: Iara Passos <isteps.data@protonmail.com>
This is a re-admission after prior archival of version 0.1.0 dated 2026-05-05
Diff between precviasBR versions 0.1.0 dated 2026-05-05 and 0.1.1 dated 2026-06-07
DESCRIPTION | 7 ++++--- MD5 | 10 +++++----- R/download_precvias.R | 8 ++++---- R/read_precvias.R | 5 ++--- man/download_precvias.Rd | 6 +++--- man/read_precvias.Rd | 5 ++--- 6 files changed, 20 insertions(+), 21 deletions(-)
Title: Constraint Multiobjective Sample Allocation
Description: Provides a framework for multipurpose optimal resource allocation in survey sampling,
extending the classical optimal allocation principles introduced by Tschuprow (1923) and
Neyman (1934) to multidomain and multivariate allocation problems. The primary method
mosalloc() allows for the consideration of precision and cost constraints at the subpopulation
level while minimizing either a vector of sampling errors or survey costs across a broad range
of optimal sample allocation problems. The approach supports both single- and multistage
designs. For single-stage stratified random sampling, the mosallocSTRS() function offers a user-
friendly interface. Sensitivity analysis is supported through the problem's dual variables, which
are naturally obtained via the internal use of the Embedded Conic Solver from the 'ECOSolveR'
package. See Willems (2025, <doi:10.25353/ubtr-9200-484c-5c89>) for a detailed description
of the theory behind 'MOSAlloc'.
Author: Felix Willems [aut, cre] ,
Ralf Muennich [ths]
Maintainer: Felix Willems <mail.willemsf+MOSAlloc@gmail.com>
Diff between MOSAlloc versions 1.2.5 dated 2026-02-14 and 1.2.6 dated 2026-06-07
DESCRIPTION | 6 - MD5 | 20 ++-- NEWS.md | 18 +++- R/mosalloc.R | 152 +++++++++++++++++++++++++++++++------ R/mosallocSTRS.R | 33 ++++++-- R/mosallocStepwiseFirst.R | 53 +++++++----- build/partial.rdb |binary man/mosalloc.Rd | 123 ++++++++++++++++++++++++++--- man/mosallocSTRS.Rd | 9 +- man/mosallocStepwiseFirst.Rd | 16 +-- tests/testthat/test-mosallocSTRS.R | 9 ++ 11 files changed, 346 insertions(+), 93 deletions(-)
Title: Estimation of Relative Risks, Risk Differences, and Marginal
Effects from Mixed Models Using Marginal Standardization
Description: Estimation of relative risks, risk differences, and
partial effects from mixed model. Marginalisation over random effect terms is accomplished using Markov Chain Monte Carlo.
Author: Sam Watson [aut, cre]
Maintainer: Sam Watson <S.I.Watson@bham.ac.uk>
This is a re-admission after prior archival of version 0.1.1 dated 2026-04-30
Diff between marginme versions 0.1.1 dated 2026-04-30 and 0.1.2 dated 2026-06-07
DESCRIPTION | 6 +++--- MD5 | 2 +- 2 files changed, 4 insertions(+), 4 deletions(-)
Title: Access to Canadian Election Study Data
Description: Provides tools to easily access and analyze Canadian Election Study data.
The package simplifies the process of downloading, cleaning, and using 'CES' datasets
for political science research and analysis. The Canadian Election Study ('CES')
has been conducted during federal elections since 1965, surveying Canadians
on their political preferences, engagement, and demographics. Data is accessed
from multiple sources including the 'Borealis' Data repository
<https://borealisdata.ca/> and the official 'Canadian Election Study' website
<https://ces-eec.arts.ubc.ca/>. This package is not officially affiliated
with the Canadian Election Study, 'Borealis' Data, or the University of British
Columbia, and users should cite the original data sources in their work.
Author: Laurence-Olivier M. Foisy [aut, cre]
Maintainer: Laurence-Olivier M. Foisy <mail@mfoisy.com>
Diff between ces versions 1.0.2 dated 2025-08-29 and 1.1.0 dated 2026-06-07
DESCRIPTION | 8 ++--- MD5 | 36 ++++++++++++------------- NEWS.md | 13 ++++++++- R/create_codebook.R | 12 +++++--- R/download_ces_dataset.R | 2 - R/download_pdf_codebook.R | 2 - R/get_ces.R | 2 - R/platform_utils.R | 14 +++++++++ R/sysdata.rda |binary README.md | 2 - build/vignette.rds |binary inst/doc/ces-introduction.Rmd | 3 +- inst/doc/ces-introduction.html | 59 +++++++++++++++++++++-------------------- man/download_ces_dataset.Rd | 2 - man/download_pdf_codebook.Rd | 2 - man/export_codebook.Rd | 12 +++++--- man/get_ces.Rd | 2 - tests/testthat/test-codebook.R | 18 +++++++++--- vignettes/ces-introduction.Rmd | 3 +- 19 files changed, 119 insertions(+), 73 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-09 3.2-6
2023-09-30 3.2-5
2023-05-10 3.2-4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-18 5.0.1
2025-06-26 5.0.0
2025-04-11 4.0.0