Title: Semi-Parametric Joint Modeling of Longitudinal and Survival Data
Description: Implements scalable joint models for large-scale competing risks time-to-event data with one or multiple longitudinal biomarkers using the efficient algorithms developed by Li et al. (2022) <doi:10.1155/2022/1362913> and <doi:10.48550/arXiv.2506.12741>.
The time-to-event process is modeled using a cause-specific Cox proportional hazards model
with time-fixed covariates, while longitudinal biomarkers are modeled
using linear mixed-effects models. The association between the longitudinal
and survival processes is captured through shared random effects. The
package enables analysis of large-scale biomedical data to model biomarker
trajectories, estimate their effects on event risks, and perform dynamic
prediction of future events based on patients' longitudinal histories.
Functions for simulating survival and longitudinal data for multiple
biomarkers are included, along with built-in example datasets. The package
also supports modeling a single biomarker with heterogeneous wit [...truncated...]
Author: Shanpeng Li [aut, cre],
Ace Mejia-Sanchez [ctb],
Emily Ouyang [ctb],
Gang Li [ctb]
Maintainer: Shanpeng Li <lishanpeng0913@ucla.edu>
Diff between FastJM versions 1.6.0 dated 2026-03-28 and 1.7.0 dated 2026-07-21
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FastJM-1.7.0/FastJM/R/vcov.mvjmcs.R |only FastJM-1.7.0/FastJM/README.md | 559 ++++++---- FastJM-1.7.0/FastJM/inst/WORDLIST | 11 FastJM-1.7.0/FastJM/man/Concordance.Rd |only FastJM-1.7.0/FastJM/man/DynPredAcc.Rd |only FastJM-1.7.0/FastJM/man/JMMLSM.Rd | 94 - FastJM-1.7.0/FastJM/man/JMMLSM_control.Rd |only FastJM-1.7.0/FastJM/man/combine_biomarkers.Rd |only FastJM-1.7.0/FastJM/man/figures/README-unnamed-chunk-11-1.png |only FastJM-1.7.0/FastJM/man/figures/README-unnamed-chunk-12-1.png |only FastJM-1.7.0/FastJM/man/figures/README-unnamed-chunk-14-1.png |only FastJM-1.7.0/FastJM/man/figures/README-unnamed-chunk-15-1.png |only FastJM-1.7.0/FastJM/man/figures/README-unnamed-chunk-17-1.png |only FastJM-1.7.0/FastJM/man/figures/README-unnamed-chunk-3-1.png |only FastJM-1.7.0/FastJM/man/figures/README-unnamed-chunk-4-1.png |binary FastJM-1.7.0/FastJM/man/figures/README-unnamed-chunk-5-1.png |only FastJM-1.7.0/FastJM/man/figures/README-unnamed-chunk-8-1.png |only FastJM-1.7.0/FastJM/man/fixef.Rd | 2 FastJM-1.7.0/FastJM/man/jmcs.Rd | 102 - 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Title: Asymmetry Measures for Probability Density Functions
Description: Provides functions and examples for the weak and strong density asymmetry measures in the articles: "A measure of asymmetry", Patil, Patil and Bagkavos (2012) <doi:10.1007/s00362-011-0401-6> and "A measure of asymmetry based on a new necessary and sufficient condition for symmetry", Patil, Bagkavos and Wood (2014) <doi:10.1007/s13171-013-0034-z>. The measures provided here are useful for quantifying the asymmetry of the shape of a density of a random variable. The package facilitates implementation of the measures which are applicable in a variety of fields including e.g. probability theory, statistics and economics.
Author: Dimitrios Bagkavos [aut, cre],
Lucia Gamez [aut]
Maintainer: Dimitrios Bagkavos <dimitrios.bagkavos@gmail.com>
Diff between asymmetry.measures versions 0.2 dated 2020-07-22 and 0.3 dated 2026-07-21
DESCRIPTION | 8 ++++---- MD5 | 24 ++++++++++++------------ man/GDP.Per.head.dist.1995.Rd | 2 +- man/GDP.Per.head.dist.2005.Rd | 2 +- man/d.sample.Rd | 2 +- man/edf.Rd | 2 +- man/p.sample.Rd | 4 ++-- man/pdfsq.Rd | 2 +- man/pdfsqcdf.Rd | 2 +- man/pdfsqcdfstar.Rd | 4 ++-- man/pdfthird.Rd | 4 ++-- man/q.sample.Rd | 2 +- man/r.sample.Rd | 2 +- 13 files changed, 30 insertions(+), 30 deletions(-)
More information about asymmetry.measures at CRAN
Permanent link
Title: Extracts Risk Neutral Densities of Prices, Money Market Rates
and Government Bond Yields from Interest Rates Futures Options
Prices
Description: Provides with parametric Risk Neutral Densities (RNDs) and cumulative densities of futures prices on fixed-income products. It relies on options on Short Term Interest Rate futures or options on government bond futures. It models the futures price as a mixture of lognormal densities. It also provides with the RNDs and cumulative densities of the money market rate or the government bond yield inferred from the futures price, using the RND of the futures price. The package also provides with the probability attached to each bond in the delivery basket of a government bond futures to be the cheapest at maturity, and also the non parametric distribution of the spread between two bond yields, using two RNDs based on options on bond futures of the same maturity. The package leverages on the works of Melick, W. R. and Thomas, C. P. (1997) <doi:10.2307/2331318> and B. Bahra (1998) <doi:10.2139/ssrn.77429>.
Author: William Arrata [aut, cre]
Maintainer: William Arrata <william.arrata@gmail.com>
Diff between yrnd versions 0.1.4 dated 2026-06-14 and 0.1.5 dated 2026-07-21
yrnd-0.1.4/yrnd/inst/doc/yrnd_functions.R |only yrnd-0.1.4/yrnd/inst/doc/yrnd_functions.Rmd |only yrnd-0.1.4/yrnd/inst/doc/yrnd_functions.html |only yrnd-0.1.4/yrnd/vignettes/yrnd_functions.Rmd |only yrnd-0.1.5/yrnd/DESCRIPTION | 12 +++--- yrnd-0.1.5/yrnd/MD5 | 50 ++++++++++++++------------ yrnd-0.1.5/yrnd/NAMESPACE | 5 ++ yrnd-0.1.5/yrnd/R/bond_future_charac_bbg.R | 2 - yrnd-0.1.5/yrnd/R/bond_future_price.R | 33 ++++++++--------- yrnd-0.1.5/yrnd/R/bond_yield_spread.R |only yrnd-0.1.5/yrnd/R/ctd_bond_yield.R | 45 +++++++++++------------ yrnd-0.1.5/yrnd/R/deliv_bonds_charac_bbg.R | 2 - yrnd-0.1.5/yrnd/R/globals.R | 3 + yrnd-0.1.5/yrnd/R/option_prices_bbg.R | 4 +- yrnd-0.1.5/yrnd/R/proba_ctd.R | 17 ++------ yrnd-0.1.5/yrnd/R/proba_ctd_opt.R |only yrnd-0.1.5/yrnd/R/stir_future_charac_bbg.R | 2 - yrnd-0.1.5/yrnd/R/stir_future_price.R | 31 +++++++--------- yrnd-0.1.5/yrnd/R/stir_rate.R | 32 ++++++++-------- yrnd-0.1.5/yrnd/build/vignette.rds |binary yrnd-0.1.5/yrnd/inst/doc/yrnd-functions.R |only yrnd-0.1.5/yrnd/inst/doc/yrnd-functions.Rmd |only yrnd-0.1.5/yrnd/inst/doc/yrnd-functions.html |only yrnd-0.1.5/yrnd/man/bond_future_price.Rd | 20 +++++----- yrnd-0.1.5/yrnd/man/bond_yield_spread.Rd |only yrnd-0.1.5/yrnd/man/ctd_bond_yield.Rd | 22 +++++------ yrnd-0.1.5/yrnd/man/deliv_bonds_charac_bbg.Rd | 2 - yrnd-0.1.5/yrnd/man/option_prices_bbg.Rd | 2 - yrnd-0.1.5/yrnd/man/proba_ctd_opt.Rd |only yrnd-0.1.5/yrnd/man/stir_future_price.Rd | 18 ++++----- yrnd-0.1.5/yrnd/man/stir_rate.Rd | 18 ++++----- yrnd-0.1.5/yrnd/vignettes/yrnd-functions.Rmd |only 32 files changed, 162 insertions(+), 158 deletions(-)
Title: Native 'LaTeX' Math Rendering for Grid Graphics
Description: Renders 'LaTeX' math equations as native R grid graphics objects
(grobs) using the 'MicroTeX' 'C++' library as the layout engine. Produces
resolution-independent vector output that works on any R graphics device,
with no external 'LaTeX' installation required.
Author: Alim Dayim [aut, cre] ,
Nano Michael [cph] ,
Bundled math font authors [cph]
Maintainer: Alim Dayim <ad938@cam.ac.uk>
Diff between gridmicrotex versions 0.0.4 dated 2026-06-01 and 0.0.5 dated 2026-07-21
DESCRIPTION | 8 +- MD5 | 48 +++++++-------- NEWS.md | 14 +++- R/cache.R | 17 +++-- R/fonts.R | 4 - R/ggplot2-integration.R | 11 +++ R/grid-builder.R | 3 R/latex-grob.R | 108 ++++++++++++++++++++--------------- R/options.R | 16 ++--- R/text-font-auto.R | 17 ----- inst/doc/getting-started.html | 6 - man/build_latex_children.Rd | 3 man/dot-make_text_measurer.Rd | 5 - man/element_latex.Rd | 12 +-- man/geom_latex.Rd | 14 +--- man/gridmicrotex-package.Rd | 5 + man/grobMark.Rd | 4 - man/latex_dims.Rd | 14 ++-- man/latex_grob.Rd | 30 +++++---- man/latex_options.Rd | 16 ++--- man/latex_tree.Rd | 14 ++-- src/otf_math_reader.cpp | 28 +++++---- tests/testthat/Rplots.pdf |binary tests/testthat/test-ggplot2.R | 18 +++++ tests/testthat/test-marks-and-just.R | 90 +++++++++++++++++++++++++++++ 25 files changed, 333 insertions(+), 172 deletions(-)
Title: Complex-Valued Wavelet Lifting for Signal Denoising
Description: Implementations of recent complex-valued wavelet shrinkage procedures for smoothing irregularly sampled signals, see Hamilton et al (2018) <doi:10.1080/00401706.2017.1281846>.
Author: Matt Nunes [aut, cre],
Marina Knight [aut],
Jean Hamilton [ctb],
Piotr Fryzlewicz [ctb]
Maintainer: Matt Nunes <nunesrpackages@gmail.com>
Diff between CNLTreg versions 0.1-2 dated 2018-07-18 and 0.1-3 dated 2026-07-21
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- build/partial.rdb |binary man/cnlt.reg.Rd | 4 ++-- man/fwtnppermC.Rd | 2 +- 5 files changed, 11 insertions(+), 11 deletions(-)
Title: 'Constrained Quantile Regression with B-Splines'
Description: Quantile regression with B-splines under shape constraints.
The initial version with cubic splines is now augmented with splines
of degree 1 to 4. Constraints for degrees 3 (monotone) and 4
(monotone and convex) use the Karlin-Studden SOCP characterization
for the sign of the polynomial, while other constraints applied
at the knots are added as linear problems. The method for cubic
splines is described in Abbes (2026) <doi:10.5281/zenodo.17427913>.
Other formulations are simple consequences of the other given
references. This R implementation is intended for demonstration
and prototyping. All B-spline and polynomial functions have been
rewritten for consistency. An equivalent Python package is available
at <https://pypi.org/project/BsplineQuantRegpy/>.
Author: Alexandre Abbes [aut, cre]
Maintainer: Alexandre Abbes <alexandre.abbes@proton.me>
Diff between BsplineQuantReg versions 0.1.0 dated 2026-06-23 and 0.2.0 dated 2026-07-21
BsplineQuantReg-0.1.0/BsplineQuantReg/R/zzz.R |only BsplineQuantReg-0.1.0/BsplineQuantReg/man/Spline_der_knots.Rd |only BsplineQuantReg-0.1.0/BsplineQuantReg/man/apply_karlin_constraints.Rd |only BsplineQuantReg-0.1.0/BsplineQuantReg/man/bspline_to_deriv_coeffs_pp.Rd |only BsplineQuantReg-0.1.0/BsplineQuantReg/man/is_beta.Rd |only BsplineQuantReg-0.1.0/BsplineQuantReg/man/package_version.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/DESCRIPTION | 33 BsplineQuantReg-0.2.0/BsplineQuantReg/MD5 | 108 +- BsplineQuantReg-0.2.0/BsplineQuantReg/NAMESPACE | 75 - BsplineQuantReg-0.2.0/BsplineQuantReg/NEWS |only BsplineQuantReg-0.2.0/BsplineQuantReg/R/bspline-base.R | 339 +++--- BsplineQuantReg-0.2.0/BsplineQuantReg/R/bspline-eval.R | 489 ++++++---- BsplineQuantReg-0.2.0/BsplineQuantReg/R/constraints.R |only BsplineQuantReg-0.2.0/BsplineQuantReg/R/cubic-regression.R |only BsplineQuantReg-0.2.0/BsplineQuantReg/R/deriv-coeffs.R |only BsplineQuantReg-0.2.0/BsplineQuantReg/R/imports.R | 9 BsplineQuantReg-0.2.0/BsplineQuantReg/R/linear-regression.R |only BsplineQuantReg-0.2.0/BsplineQuantReg/R/onLoad.R | 42 BsplineQuantReg-0.2.0/BsplineQuantReg/R/polynomial-utils.R | 360 +++---- BsplineQuantReg-0.2.0/BsplineQuantReg/R/quadratic-regression.R |only BsplineQuantReg-0.2.0/BsplineQuantReg/R/quantile-regression.R | 416 ++------ BsplineQuantReg-0.2.0/BsplineQuantReg/R/quartic-regression.R |only BsplineQuantReg-0.2.0/BsplineQuantReg/R/test_bsqr.R | 195 ++- BsplineQuantReg-0.2.0/BsplineQuantReg/README.md | 232 +++- BsplineQuantReg-0.2.0/BsplineQuantReg/build/partial.rdb |binary BsplineQuantReg-0.2.0/BsplineQuantReg/demo/00Index | 14 BsplineQuantReg-0.2.0/BsplineQuantReg/demo/comprehensive.R | 332 +++--- BsplineQuantReg-0.2.0/BsplineQuantReg/demo/convexity.R | 242 ++-- BsplineQuantReg-0.2.0/BsplineQuantReg/demo/degrees_comparison.R |only BsplineQuantReg-0.2.0/BsplineQuantReg/demo/demo_der3.R |only BsplineQuantReg-0.2.0/BsplineQuantReg/demo/logistic.R | 403 ++++---- BsplineQuantReg-0.2.0/BsplineQuantReg/demo/monotonicity.R | 133 +- BsplineQuantReg-0.2.0/BsplineQuantReg/demo/temperature.R | 421 ++++---- BsplineQuantReg-0.2.0/BsplineQuantReg/demo/temperature2.R | 487 +++++---- BsplineQuantReg-0.2.0/BsplineQuantReg/inst/CITATION | 97 + BsplineQuantReg-0.2.0/BsplineQuantReg/inst/References.bib | 82 - BsplineQuantReg-0.2.0/BsplineQuantReg/man/Bspline_base.Rd | 104 +- BsplineQuantReg-0.2.0/BsplineQuantReg/man/Bspline_deriv.Rd | 42 BsplineQuantReg-0.2.0/BsplineQuantReg/man/Omega.Rd | 48 BsplineQuantReg-0.2.0/BsplineQuantReg/man/SplineConstQuantRegBs1.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/SplineConstQuantRegBs2.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/SplineConstQuantRegBs3.Rd | 145 +- BsplineQuantReg-0.2.0/BsplineQuantReg/man/SplineConstQuantRegBs4.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/SplineCubicQuant.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/SplineLinearQuant.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/SplineQuadraticQuant.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/SplineQuarticQuant.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/Spline_der_knot.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/apply_karlin_cubic.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/apply_karlin_quadratic.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/apply_linear_constraint.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/bs_direct.Rd | 38 BsplineQuantReg-0.2.0/BsplineQuantReg/man/bspline_to_deriv_coeffs_cubic.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/bspline_to_deriv_coeffs_lin.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/bspline_to_deriv_coeffs_quad.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/bspline_to_deriv_coeffs_quart.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/change_polynomial_base_taylor.Rd | 48 BsplineQuantReg-0.2.0/BsplineQuantReg/man/dot-onAttach.Rd | 32 BsplineQuantReg-0.2.0/BsplineQuantReg/man/evalpp.Rd | 40 BsplineQuantReg-0.2.0/BsplineQuantReg/man/make_spline.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/makpp.Rd | 40 BsplineQuantReg-0.2.0/BsplineQuantReg/man/poly_eval.Rd | 46 BsplineQuantReg-0.2.0/BsplineQuantReg/man/polyadd.Rd | 48 BsplineQuantReg-0.2.0/BsplineQuantReg/man/polyderiv.Rd | 50 - BsplineQuantReg-0.2.0/BsplineQuantReg/man/polymul.Rd | 54 - BsplineQuantReg-0.2.0/BsplineQuantReg/man/print.callable_spline.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/print.quantile_spline.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/quantile_spline.Rd |only BsplineQuantReg-0.2.0/BsplineQuantReg/man/reduce_pol.Rd | 44 BsplineQuantReg-0.2.0/BsplineQuantReg/man/spline_eval.Rd | 64 - BsplineQuantReg-0.2.0/BsplineQuantReg/man/test_karlin_simple.Rd | 48 BsplineQuantReg-0.2.0/BsplineQuantReg/man/view_basis.Rd | 38 72 files changed, 2779 insertions(+), 2659 deletions(-)
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Title: Weighted and Standard Elo Rates
Description: Estimates the standard and weighted Elo (WElo, Angelini et al., 2022 <doi:10.1016/j.ejor.2021.04.011>) rates. The current version provides Elo and WElo rates for tennis, according to different systems of weights (games or sets) and scale factors (constant, proportional to the number of matches, with more weight on Grand Slam matches or matches played on a specific surface). Moreover, the package gives the possibility of estimating the (bootstrap) standard errors for the rates. Finally, the package includes betting functions that automatically select the matches on which place a bet.
Author: Vincenzo Candila [aut, cre]
Maintainer: Vincenzo Candila <vcandila@unisa.it>
Diff between welo versions 0.1.4 dated 2024-03-19 and 0.1.5 dated 2026-07-21
DESCRIPTION | 8 +- MD5 | 10 +-- NEWS.md | 11 ++-- R/functions.R | 145 +++++++++++++++++++++++++++++++++++++++++++++-------- build/partial.rdb |binary man/tennis_data.Rd | 23 ++++++-- 6 files changed, 158 insertions(+), 39 deletions(-)
Title: Analysis of Two-Way Tables
Description: Carries out analyses of two-way tables with one observation per cell, together with graphical displays
for an additive fit and
a diagnostic plot for removable 'non-additivity' via a power transformation of the response.
It implements methods from Tukey's Exploratory Data Analysis (1973) <ISBN: 978-0201076165>, including a
1-degree-of-freedom test for row*column 'non-additivity', linear in the row and column effects.
Author: Michael Friendly [aut, cre] ,
Richard M. Heiberger [aut],
John Fox [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between twoway versions 0.6.3 dated 2020-06-26 and 0.7.0 dated 2026-07-21
DESCRIPTION | 18 +++++++++------ MD5 | 53 ++++++++++++++++++++++++++------------------- NAMESPACE | 3 ++ NEWS.md | 14 +++++++++++ R/anova.twoway.R | 12 +++++++--- R/as.data.frame.twoway.R | 3 +- R/data.R | 55 +++++++++++++++++++++++++++++++++++++++++++++-- R/plot.twoway.R | 2 + R/twoway.R | 2 - R/twoway.formula.R | 4 ++- data/Rubber.RData |only data/VermontPop.RData |only data/sentRT.RData |binary man/Arizona.Rd | 8 ++++-- man/Rubber.Rd |only man/VermontPop.Rd |only man/as.twoway.Rd | 11 +++++---- man/drugs.Rd | 5 +++- man/figures |only man/hstart.Rd | 5 +++- man/insectCounts.Rd | 4 ++- man/meanfit.Rd | 3 +- man/plot.twoway.Rd | 24 +++++++++++--------- man/print.twoway.Rd | 3 -- man/taskRT.Rd | 6 +++-- man/to_long.Rd | 11 +++++---- man/twoway.Rd | 14 ++++++++--- man/twoway.formula.Rd | 4 ++- 28 files changed, 193 insertions(+), 71 deletions(-)
Title: Rearrangement Distances Between Phylogenetic Trees
Description: Fast calculation of tree rearrangement distances.
For unrooted trees: Subtree Prune and Regraft (SPR), Tree Bisection and
Reconnection (TBR), and Replug distances, using the algorithms of Whidden
and Matsen (2017) <doi:10.48550/arXiv.1511.07529>.
For rooted trees: rooted SPR (rSPR) distance, using the fixed-parameter
algorithms of Whidden, Beiko, and Zeh (2013) <doi:10.1137/110845045>.
Author: Martin R. Smith [aut, cre, cph] ,
Chris Whidden [cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between TBRDist versions 2.0.0 dated 2026-03-30 and 2.0.1 dated 2026-07-21
DESCRIPTION | 6 MD5 | 186 +++--- NAMESPACE | 40 - NEWS.md | 4 R/RcppExports.R | 64 +- R/rspr.R | 246 ++++---- R/uspr.R | 734 ++++++++++++------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/TBRDist.html | 4 man/RSPRDist.Rd | 194 +++--- man/dot-CheckRooted.Rd | 38 - man/rspr_dist.Rd | 52 - src/rspr/R/rspR.r | 116 +-- src/rspr/R/rspR_examples.r | 52 - src/rspr/gen_rooted_trees.pl | 284 ++++----- src/rspr/multi_test.sh | 302 +++++----- src/rspr/rspr.h | 4 src/rspr/test_trees/big_test | 4 src/rspr/test_trees/big_test2 | 4 src/rspr/test_trees/bigtest_mult.txt | 2 src/rspr/test_trees/cluster_1.txt | 4 src/rspr/test_trees/cluster_10.txt | 2 src/rspr/test_trees/cluster_11.txt | 2 src/rspr/test_trees/cluster_12.txt | 2 src/rspr/test_trees/cluster_13.txt | 6 src/rspr/test_trees/cluster_14.txt | 4 src/rspr/test_trees/cluster_15.txt | 4 src/rspr/test_trees/cluster_16.txt | 2 src/rspr/test_trees/cluster_17.txt | 2 src/rspr/test_trees/cluster_18.txt | 2 src/rspr/test_trees/cluster_19.txt | 4 src/rspr/test_trees/cluster_2.txt | 4 src/rspr/test_trees/cluster_3.txt | 4 src/rspr/test_trees/cluster_4.txt | 4 src/rspr/test_trees/cluster_5.txt | 2 src/rspr/test_trees/cluster_6.txt | 2 src/rspr/test_trees/cluster_7.txt | 2 src/rspr/test_trees/cluster_8.txt | 2 src/rspr/test_trees/cluster_9.txt | 2 src/rspr/test_trees/cluster_a.txt | 2 src/rspr/test_trees/cluster_b.txt | 2 src/rspr/test_trees/cluster_c.txt | 2 src/rspr/test_trees/cluster_d.txt | 2 src/rspr/test_trees/cluster_e.txt | 2 src/rspr/test_trees/cluster_f.txt | 2 src/rspr/test_trees/cluster_test | 4 src/rspr/test_trees/mult_big_test | 2 src/rspr/test_trees/multi_cluster_test | 2 src/rspr/test_trees/multi_cluster_test_b.txt | 2 src/rspr/test_trees/multi_tree_7.1_test_00.txt | 2 src/rspr/test_trees/multi_tree_7.3_test_00.txt | 2 src/rspr/test_trees/multi_tree_7.4_test_00.txt | 2 src/rspr/test_trees/multi_tree_8.2_test_00.txt | 2 src/rspr/test_trees/multi_tree_8.4_test_00.txt | 2 src/rspr/test_trees/multi_tree_8.4_test_01.txt | 2 src/rspr/test_trees/multi_tree_8.5_test_00.txt | 2 src/rspr/test_trees/multi_tree_8.6_test_00.txt | 2 src/rspr/test_trees/multi_tree_8.7_test_00.txt | 2 src/rspr/test_trees/multi_tree_8.7_test_01.txt | 2 src/rspr/test_trees/multi_tree_basic.txt | 6 src/rspr/test_trees/multi_tree_basic_2.txt | 4 src/rspr/test_trees/multi_tree_basic_5.txt | 6 src/rspr/test_trees/multi_tree_test_00.txt | 2 src/rspr/test_trees/rand_mult_.txt | 2 src/rspr/test_trees/rand_mult_10.txt | 2 src/rspr/test_trees/rand_mult_15.txt | 2 src/rspr/test_trees/rand_mult_xx.txt | 2 src/rspr/test_trees/rho_test.txt | 2 src/rspr/test_trees/rho_test2.txt | 4 src/rspr/test_trees/show_moves_test.txt | 4 src/rspr/test_trees/show_moves_test_1.txt | 2 src/rspr/test_trees/show_moves_test_2.txt | 4 src/rspr/test_trees/single_cut_test_00.txt | 2 src/rspr/test_trees/single_cut_test_01.txt | 2 src/rspr/test_trees/trees2.txt | 4 src/rspr/test_trees/trees3.txt | 4 src/rspr/test_trees/trees4.txt | 4 src/rspr/test_trees/trees5.txt | 4 src/rspr/test_trees/trees6.txt | 4 src/rspr/test_trees/trees7.txt | 4 src/rspr/test_trees/trees_100_17.txt | 4 src/rspr/test_trees/trees_100_17_a.txt | 4 src/rspr/test_trees/trees_100_17_mult.txt | 4 src/rspr/test_trees/trees_100_24.txt | 4 src/rspr/test_trees/trees_100_24_a.txt | 4 src/rspr/test_trees/trees_100_24_mult.txt | 4 src/rspr/test_trees/trees_100_9.txt | 4 src/rspr/test_trees/trees_100_9_a.txt | 4 src/rspr/test_trees/trees_a.txt | 4 src/rspr/tests/pairwise | 8 src/uspr/tbr.h | 4 src/uspr/uspr.h | 10 tests/testthat/test-rspr.R | 396 ++++++------- 94 files changed, 1490 insertions(+), 1468 deletions(-)
Title: Interpretation of Point Forecasts as State-Dependent Quantiles
and Expectiles
Description: Estimate specification models for the state-dependent level of an optimal quantile/expectile forecast.
Wald Tests and the test of overidentifying restrictions are implemented. Plotting of the estimated specification model is possible.
The package contains two data sets with forecasts and realizations: the daily accumulated precipitation at London, UK from the high-resolution model of the
European Centre for Medium-Range Weather Forecasts (ECMWF, <https://www.ecmwf.int/>) and GDP growth Greenbook data by the US Federal Reserve.
See Schmidt, Katzfuss and Gneiting (2015) <doi:10.48550/arXiv.1506.01917> for more details on the identification and estimation of a directive behind a point forecast.
Author: Patrick Schmidt [aut, cre]
Maintainer: Patrick Schmidt <pschmidte@gmail.com>
Diff between PointFore versions 0.2.0 dated 2019-02-22 and 0.2.1 dated 2026-07-21
DESCRIPTION | 14 MD5 | 63 +- NEWS.md |only R/data.R | 6 R/estimate_functional.R | 7 README.md | 68 +- build/vignette.rds |binary data/GDP.rda |binary inst/doc/GDP.R | 42 - inst/doc/GDP.Rmd | 45 - inst/doc/GDP.html | 1066 +++++++++++++++++++++++++++----------------- inst/doc/Precipitation.R | 12 inst/doc/Precipitation.Rmd | 2 inst/doc/Precipitation.html | 526 ++++++++++++++++----- inst/doc/Tutorial.R | 28 - inst/doc/Tutorial.html | 843 +++++++++++++++++++++++----------- man/GDP.Rd | 11 man/PointFore.Rd | 1 man/constant.Rd | 10 man/estimate.functional.Rd | 23 man/expectiles.Rd | 3 man/logistic_linear.Rd | 10 man/plot.pointfore.Rd | 11 man/precipitation.Rd | 6 man/probit_break.Rd | 11 man/probit_linear.Rd | 10 man/probit_spline2.Rd | 10 man/probit_spline3.Rd | 12 man/quantiles.Rd | 3 man/summary.pointfore.Rd | 2 tests/testthat/testGDP.R | 2 vignettes/GDP.Rmd | 45 - vignettes/Precipitation.Rmd | 2 33 files changed, 1851 insertions(+), 1043 deletions(-)
Title: Descriptive Analysis and Visualization for Panel Data
Description: Provides a comprehensive set of tools for describing and visualizing panel data structures,
as well as for summarizing and visualizing variables within a panel data context.
Author: Dmitrii Tereshchenko [aut, cre]
Maintainer: Dmitrii Tereshchenko <dtereshch@gmail.com>
Diff between paneldesc versions 0.1.1 dated 2026-03-23 and 0.2.0 dated 2026-07-21
DESCRIPTION | 9 - MD5 | 100 ++++++++------ NAMESPACE | 13 + NEWS.md | 15 ++ R/add_means.R |only R/decompose_factor.R | 8 - R/decompose_numeric.R | 6 R/describe_balance.R | 8 - R/describe_dimensions.R | 6 R/describe_incomplete.R | 27 +++ R/describe_patterns.R | 11 + R/describe_periods.R | 9 - R/make_balanced.R |only R/make_demeaned.R |only R/make_long.R |only R/make_panel.R | 208 ++++-------------------------- R/make_wide.R |only R/plot_demeaned.R |only R/plot_heterogeneity.R | 11 - R/plot_missing.R | 29 ++-- R/plot_patterns.R | 14 +- R/plot_periods.R | 11 + R/production.R | 4 R/summarize_missing.R | 6 R/summarize_numeric.R | 8 - R/summarize_transition.R | 6 README.md | 9 + build/vignette.rds |binary data/production.rda |binary inst/doc/data-processing.R |only inst/doc/data-processing.Rmd |only inst/doc/data-processing.html |only inst/doc/getting-started.R | 16 +- inst/doc/getting-started.Rmd | 25 ++- inst/doc/getting-started.html | 287 ++++++++++++++++++++++-------------------- man/add_means.Rd |only man/decompose_factor.Rd | 7 - man/decompose_numeric.Rd | 5 man/describe_balance.Rd | 7 - man/describe_dimensions.Rd | 5 man/describe_incomplete.Rd | 5 man/describe_patterns.Rd | 12 + man/describe_periods.Rd | 10 - man/make_balanced.Rd |only man/make_demeaned.Rd |only man/make_long.Rd |only man/make_panel.Rd | 46 ++---- man/make_wide.Rd |only man/plot_demeaned.Rd |only man/plot_heterogeneity.Rd | 11 - man/plot_missing.Rd | 14 +- man/plot_patterns.Rd | 15 +- man/plot_periods.Rd | 10 - man/production.Rd | 4 man/summarize_missing.Rd | 5 man/summarize_numeric.Rd | 8 - man/summarize_transition.Rd | 5 vignettes/data-processing.Rmd |only vignettes/getting-started.Rmd | 25 ++- 59 files changed, 538 insertions(+), 502 deletions(-)
Title: Latent Variable Gaussian Process Modeling with Qualitative and
Quantitative Input Variables
Description: Fit response surfaces for datasets with latent-variable Gaussian
process modeling, predict responses for new inputs, and plot latent
variables locations in the latent space (only 1D or 2D). The input
variables of the datasets can be quantitative, qualitative/categorical or
mixed. The output variable of the datasets is a scalar (quantitative). The
optimization of the likelihood function is done using a successive
approximation/relaxation algorithm similar to another GP modeling package
"GPM". The modeling method is published in "A Latent Variable Approach to
Gaussian Process Modeling with Qualitative and Quantitative Factors" by
Yichi Zhang, Siyu Tao, Wei Chen, and Daniel W. Apley (2018)
<doi:10.48550/arXiv.1806.07504>. The package is developed in IDEAL of
Northwestern University.
Author: Siyu Tao [aut, cre],
Yichi Zhang [aut],
Daniel W. Apley [aut],
Wei Chen [aut]
Maintainer: Siyu Tao <siyutao2020@u.northwestern.edu>
Diff between LVGP versions 2.1.5 dated 2019-01-11 and 2.1.6 dated 2026-07-21
DESCRIPTION | 39 +++++++++++++++++++++++++++------------ MD5 | 15 ++++++++------- NEWS |only R/LVGP_fit.R | 16 ++++++++-------- R/LVGP_predict.R | 8 ++++---- R/example-data.R | 2 +- man/LVGP_fit.Rd | 16 ++++++++-------- man/LVGP_predict.Rd | 6 +++--- man/math_example.Rd | 2 +- 9 files changed, 60 insertions(+), 44 deletions(-)
Title: Apply-Style Dispatch for High-Performance Computing
Description: Provides apply-style functions using the Message Passing Interface ('MPI')
to improve the High-Performance Computing ('HPC') environment in R.
The package supports long vectors and efficient handling of large datasets for
MPI-based parallel computations.
Author: Ei-ji Nakama [aut, cre],
Junji NAKANO [aut]
Maintainer: Ei-ji Nakama <nakama@ki.rim.or.jp>
This is a re-admission after prior archival of version 0.21-247 dated 2021-09-04
Diff between Rhpc versions 0.21-247 dated 2021-09-04 and 0.26.4 dated 2026-07-21
Rhpc-0.21-247/Rhpc/README |only Rhpc-0.21-247/Rhpc/src/RhpcSerialize.c |only Rhpc-0.21-247/Rhpc/src/common/Rhpc_ms.h |only Rhpc-0.21-247/Rhpc/src/registerDynamicSymbol.c |only Rhpc-0.21-247/Rhpc/src/worker/RhpcWorkerSerialize.c |only Rhpc-0.26.4/Rhpc/ChangeLog | 8 Rhpc-0.26.4/Rhpc/DESCRIPTION | 37 Rhpc-0.26.4/Rhpc/MD5 | 93 Rhpc-0.26.4/Rhpc/NAMESPACE | 11 Rhpc-0.26.4/Rhpc/R/Rhpc.R | 10 Rhpc-0.26.4/Rhpc/R/RhpcRNG.R | 29 Rhpc-0.26.4/Rhpc/README.md |only Rhpc-0.26.4/Rhpc/build |only Rhpc-0.26.4/Rhpc/cleanup | 15 Rhpc-0.26.4/Rhpc/configure | 2792 ++++++++++---------- Rhpc-0.26.4/Rhpc/configure.ac | 31 Rhpc-0.26.4/Rhpc/inst |only Rhpc-0.26.4/Rhpc/man/Rhpc-package.Rd | 162 - Rhpc-0.26.4/Rhpc/man/Rhpc_EvalQ.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_Export.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_apply.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_enquote.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_finalize.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_getHandle.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_initialize.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_lapply.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_lapplyLB.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_numberOfWorker.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_sapply.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_sapplyLB.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_serialize.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_setupRNG.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_splitList.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_worker_call.Rd |only Rhpc-0.26.4/Rhpc/man/Rhpc_worker_noback.Rd |only Rhpc-0.26.4/Rhpc/src/Makevars.in | 10 Rhpc-0.26.4/Rhpc/src/Makevars.win | 41 Rhpc-0.26.4/Rhpc/src/RhpcMPI.c | 257 - Rhpc-0.26.4/Rhpc/src/RhpcMPIWorkerCall.c |only Rhpc-0.26.4/Rhpc/src/RhpcMPIWorkerCall.h | 198 - Rhpc-0.26.4/Rhpc/src/RhpcMPIlapplyLB.c |only Rhpc-0.26.4/Rhpc/src/RhpcMPIlapplyLB.h | 292 -- Rhpc-0.26.4/Rhpc/src/RhpcMPIlapplyseq.c |only Rhpc-0.26.4/Rhpc/src/RhpcMPIlapplyseq.h | 279 - Rhpc-0.26.4/Rhpc/src/Rhpc_init.c |only Rhpc-0.26.4/Rhpc/src/common/Makefile.in |only Rhpc-0.26.4/Rhpc/src/common/Makefile.win |only Rhpc-0.26.4/Rhpc/src/common/Rhpc.h | 122 Rhpc-0.26.4/Rhpc/src/common/RhpcMS.c |only Rhpc-0.26.4/Rhpc/src/common/RhpcSerialize.c |only Rhpc-0.26.4/Rhpc/src/common/fakemaster.h | 6 Rhpc-0.26.4/Rhpc/src/msmpi64.def |only Rhpc-0.26.4/Rhpc/src/worker/Makefile.in | 17 Rhpc-0.26.4/Rhpc/src/worker/Makefile.win | 35 Rhpc-0.26.4/Rhpc/src/worker/RhpcSpawnWin64.cmd |only Rhpc-0.26.4/Rhpc/src/worker/RhpcWorker.c | 70 Rhpc-0.26.4/Rhpc/src/worker/RhpcWorker_LapplyLB.c |only Rhpc-0.26.4/Rhpc/src/worker/RhpcWorker_LapplyLB.h | 254 - Rhpc-0.26.4/Rhpc/src/worker/RhpcWorker_Lapplyseq.c |only Rhpc-0.26.4/Rhpc/src/worker/RhpcWorker_Lapplyseq.h | 288 -- Rhpc-0.26.4/Rhpc/src/worker/RhpcWorker_WorkerCall.c |only Rhpc-0.26.4/Rhpc/src/worker/RhpcWorker_WorkerCall.h | 162 - Rhpc-0.26.4/Rhpc/src/worker/fakemaster.c | 11 Rhpc-0.26.4/Rhpc/vignettes |only 64 files changed, 1928 insertions(+), 3302 deletions(-)
Title: Electrical Properties of Resistor Networks
Description: Electrical properties of resistor networks using matrix methods.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between ResistorArray versions 1.0-32 dated 2019-01-29 and 1.0-33 dated 2026-07-21
DESCRIPTION | 14 +++++++------- MD5 | 29 +++++++++++++++++------------ NAMESPACE | 2 +- R/ResistorArray.R | 12 +++++------- README.md |only build/partial.rdb |binary build/vignette.rds |binary data/SquaredSquare.rda |binary inst/CITATION | 11 +++-------- inst/ResistorArray_icon.png |only inst/ResistorArray_icon.svg |only inst/ResistorArray_stickermaker.R |only inst/doc/ResistorArray.R | 2 -- inst/doc/ResistorArray.pdf |binary man/cube.Rd | 2 +- man/figures |only man/resistance.Rd | 4 ++-- vignettes/resistors.bib | 5 +---- 18 files changed, 37 insertions(+), 44 deletions(-)
Title: A Lightweight Interface to NYC Open Data APIs
Description: Provides a unified set of helper functions to access datasets
from the NYC Open Data platform <https://opendata.cityofnewyork.us/>.
Functions return results as tidy tibbles and support optional filtering,
sorting, and row limits via the Socrata API. The package includes endpoints
for 311 service requests, DOB job applications, juvenile justice metrics,
school safety, environmental data, event permitting, and additional citywide datasets.
Author: Christian Martinez [aut, cre] ,
Crystal Adote [ctb] ,
Jonah Dratfield [ctb] ,
Joyce Escatel-Flores [ctb] ,
Rob Hutto [ctb] ,
Isley Jean-Pierre [ctb] ,
Shannon Joyce [ctb] ,
Laura Rose-Werner [ctb] ,
Emma Tupone [ctb] ,
Xinru Wang [ctb]
Maintainer: Christian Martinez <c.martinez0@outlook.com>
Diff between nycOpenData versions 0.2.2 dated 2026-06-18 and 0.2.3 dated 2026-07-21
DESCRIPTION | 12 ++++---- MD5 | 14 +++++----- NEWS.md | 57 +++++------------------------------------- README.md | 22 +++++++++++----- inst/CITATION | 4 +- inst/doc/getting-started.Rmd | 2 - inst/doc/getting-started.html | 6 ++-- vignettes/getting-started.Rmd | 2 - 8 files changed, 43 insertions(+), 76 deletions(-)
Title: Merger Simulation and Calibration
Description: Analyze mergers between firms. Models of competition include
differentiated Bertrand price-setting, Nash bargaining, and second score
auctions, as implemented in Panhans and Taragin (2023)
<doi:10.1016/j.ijindorg.2023.102986>. Calibrates demand systems including
standard logit, nested logit, and generalized nested logit as
implemented in Panhans and Wiemer (2026) <doi:10.1093/joclec/nhaf037>.
Author: Matthew T Panhans [aut, cre]
Maintainer: Matthew T Panhans <mpanhans@gmail.com>
Diff between mergersim versions 0.1.0 dated 2026-07-02 and 0.2.0 dated 2026-07-21
DESCRIPTION | 6 MD5 | 44 +++--- NEWS.md | 4 R/bargain_calibrate.R | 15 +- R/bargain_foc.R | 2 R/bertrand_calibrate.R | 69 ++++----- R/bertrand_calibrate_gnl.R | 202 +++++----------------------- R/ssa_calibrate.R | 19 +- R/ssbargain_calibrate.R | 15 +- inst/doc/calibrating-gnl-demand.R | 18 -- inst/doc/calibrating-gnl-demand.Rmd | 21 -- inst/doc/calibrating-gnl-demand.html | 108 +++++++------- inst/doc/horizontal-merger-simulations.R | 27 +-- inst/doc/horizontal-merger-simulations.Rmd | 31 ++-- inst/doc/horizontal-merger-simulations.html | 34 ++-- man/bargain_calibrate.Rd | 8 - man/bargain_foc.Rd | 2 man/bertrand_calibrate.Rd | 8 - man/bertrand_calibrate_gnl.Rd | 33 ---- man/ssa_calibrate.Rd | 8 - man/ssbargain_calibrate.Rd | 8 - vignettes/calibrating-gnl-demand.Rmd | 21 -- vignettes/horizontal-merger-simulations.Rmd | 31 ++-- 23 files changed, 295 insertions(+), 439 deletions(-)
Title: 3D Plotting with 'ggplot2'
Description: A 'ggplot2' extension for creating 3D figures.
Provides 3D geoms, stats, and a coord_3d() coordinate
system supporting rotation, perspective, and lighting.
Author: Matthew Kling [aut, cre, cph]
Maintainer: Matthew Kling <mattkling@berkeley.edu>
Diff between ggcube versions 0.1.0 dated 2026-05-27 and 0.2.0 dated 2026-07-21
DESCRIPTION | 16 ++- MD5 | 111 ++++++++++++++---------- NAMESPACE | 3 NEWS.md | 6 + R/animate-3d.R | 94 ++++++++++++++++----- R/geom-hull-3d.R | 11 -- R/geom-path-3d.R | 2 R/geom-point-3d.R | 2 R/geom-segment-3d.R | 2 R/grid-gen.R | 4 R/guide_3d.R | 151 ++++++++++++++++++++++++++++------ R/label-rendering.R | 72 +++++++++++----- R/light.R | 45 ++++++---- R/orbit-3d.R |only R/panel-rendering.R | 23 ++++- R/shared-docs.R | 72 +++++++++------- R/theme.R | 75 +++++++--------- R/zzz.R | 11 +- README.md | 109 +++++++++++++++++------- build/vignette.rds |binary inst/doc/ggcube.R | 5 - inst/doc/ggcube.Rmd | 29 ++++-- inst/doc/ggcube.html | 62 +++++++------ inst/htmlwidgets |only man/anim_save_3d.Rd | 2 man/animate_3d.Rd | 12 +- man/cube_theming.Rd | 12 +- man/element_rect.Rd | 56 +++++------- man/figures/README-anim-1.gif |only man/figures/README-bar-1.png |binary man/figures/README-contour-1.png |only man/figures/README-contour_anim-1.gif |binary man/figures/README-functions-1.png |binary man/figures/README-smooth-1.png |binary man/figures/README-text-1.png |binary man/geom_col_3d.Rd | 2 man/geom_contour_3d.Rd | 2 man/geom_hull_3d.Rd | 4 man/geom_path_3d.Rd | 19 ---- man/geom_point_3d.Rd | 19 ---- man/geom_segment_3d.Rd | 19 ---- man/ggcube.Rd | 5 + man/grid_generation.Rd | 30 +++--- man/guide_3d.Rd | 2 man/orbit_3d-shiny.Rd |only man/orbit_3d.Rd |only man/position_on_face.Rd | 2 man/renderers_3d.Rd | 2 man/scale_z_continuous.Rd | 8 - man/scale_z_discrete.Rd | 6 - man/sort_params.Rd |only man/sorting_methods.Rd | 30 +++--- man/stat_density_3d.Rd | 2 man/stat_distributions_3d.Rd | 8 - man/zlim.Rd | 6 - tests/testthat/Rplots.pdf |only tests/testthat/test-guide_3d.R |only tests/testthat/test-label-rendering.R |only tests/testthat/test-light.R |only tests/testthat/test-orbit-3d.R |only tests/testthat/test-theme.R |only vignettes/ggcube.Rmd | 29 ++++-- 62 files changed, 726 insertions(+), 456 deletions(-)
Title: Difference-in-Differences with a Continuous Treatment
Description: Provides methods for difference-in-differences with a continuous treatment and staggered treatment adoption. Includes estimation of treatment effects and causal responses as a function of the dose, event studies indexed by length of exposure to the treatment, and aggregation into overall average effects. Uniform inference procedures are included, along with both parametric and nonparametric models for treatment effects. The methods are based on Callaway, Goodman-Bacon, and Sant'Anna (2025) <doi:10.48550/arXiv.2107.02637>.
Author: Brantly Callaway [aut, cre],
Andrew Goodman-Bacon [aut],
Pedro H. C. Sant'Anna [aut]
Maintainer: Brantly Callaway <brantly.callaway@uga.edu>
This is a re-admission after prior archival of version 0.1.0 dated 2025-07-03
Diff between contdid versions 0.1.0 dated 2025-07-03 and 0.1.1 dated 2026-07-21
DESCRIPTION | 12 ++-- MD5 | 26 +++++----- NEWS.md | 9 +++ R/ggcont_did.R | 4 - README.md | 65 ++++++++++++++----------- inst/CITATION | 2 man/cont_did.Rd | 79 +++++++++++++++++++++---------- man/contdid-package.Rd | 1 man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-5-2.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary man/figures/README-unnamed-chunk-8-1.png |binary man/setup_pte_cont.Rd | 2 14 files changed, 123 insertions(+), 77 deletions(-)
Title: Automatic Plotting and Theming of Many Graphs
Description: Visual exploration and presentation of networks should not be difficult.
This package includes functions for plotting networks and network-related metrics with sensible and pretty defaults.
It includes 'ggplot2'-based plot methods for many popular network package classes.
It also includes some novel layout algorithms, and options for straightforward, consistent themes.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between autograph versions 1.0.3 dated 2026-05-01 and 1.1.1 dated 2026-07-21
autograph-1.0.3/autograph/inst/tutorials/tutorial2 |only autograph-1.1.1/autograph/DESCRIPTION | 19 autograph-1.1.1/autograph/MD5 | 67 autograph-1.1.1/autograph/NAMESPACE | 21 autograph-1.1.1/autograph/NEWS.md | 106 + autograph-1.1.1/autograph/R/autograph_utilities.R | 4 autograph-1.1.1/autograph/R/graph_aes.R |only autograph-1.1.1/autograph/R/graph_edges.R | 211 -- autograph-1.1.1/autograph/R/graph_labels.R | 105 - autograph-1.1.1/autograph/R/graph_nodes.R | 70 autograph-1.1.1/autograph/R/graphr.R | 59 autograph-1.1.1/autograph/R/graphs.R | 51 autograph-1.1.1/autograph/R/grapht.R | 978 ++++++---- autograph-1.1.1/autograph/R/layout_layered.R | 17 autograph-1.1.1/autograph/R/plot_analysis.R | 44 autograph-1.1.1/autograph/R/plot_convergence.R | 2 autograph-1.1.1/autograph/R/theme_palettes.R | 3 autograph-1.1.1/autograph/README.md | 4 autograph-1.1.1/autograph/build/partial.rdb |binary autograph-1.1.1/autograph/inst/tutorials/autograph1 |only autograph-1.1.1/autograph/man/layout_configuration.Rd | 2 autograph-1.1.1/autograph/man/layout_partition.Rd | 4 autograph-1.1.1/autograph/man/plot_convergence.Rd | 4 autograph-1.1.1/autograph/man/plot_gof.Rd | 6 autograph-1.1.1/autograph/man/plot_graphr.Rd | 43 autograph-1.1.1/autograph/man/plot_graphs.Rd | 15 autograph-1.1.1/autograph/man/plot_grapht.Rd | 120 - autograph-1.1.1/autograph/man/plot_interp.Rd | 5 autograph-1.1.1/autograph/man/reexports.Rd | 4 autograph-1.1.1/autograph/tests/testthat/Rplots.pdf |only autograph-1.1.1/autograph/tests/testthat/helper-functional.R |only autograph-1.1.1/autograph/tests/testthat/helper-tutorials.R |only autograph-1.1.1/autograph/tests/testthat/test-functional_aes.R |only autograph-1.1.1/autograph/tests/testthat/test-functional_layouts.R |only autograph-1.1.1/autograph/tests/testthat/test-functional_plots.R |only autograph-1.1.1/autograph/tests/testthat/test-functional_themes.R |only autograph-1.1.1/autograph/tests/testthat/test-graphr.R | 142 + autograph-1.1.1/autograph/tests/testthat/test-grapht.R |only autograph-1.1.1/autograph/tests/testthat/test-tutorials_autograph.R |only 39 files changed, 1403 insertions(+), 703 deletions(-)
Title: Metrics of R Packages
Description: Static code analyses for R packages using the external code-tagging
libraries 'ctags' and 'gtags'. Static analyses enable packages to be
analysed very quickly, generally a couple of seconds at most. The package
also provides access to a database generating by applying the main function
to the full 'CRAN' archive, enabling the statistical properties of any package
to be compared with all other 'CRAN' packages.
Author: Mark Padgham [aut, cre] ,
Michael Sumner [ctb] ,
Jeffrey Hollister [ctb] ,
Egor Kotov [ctb]
Maintainer: Mark Padgham <mark.padgham@email.com>
Diff between pkgstats versions 0.2.3 dated 2026-06-01 and 0.2.4 dated 2026-07-21
DESCRIPTION | 10 +-- MD5 | 26 +++++---- NEWS.md | 16 ++++- R/ctags-test.R | 46 ++++++++++------ R/plot.R | 104 +++++++++++++++++++++++++++--------- R/zzz.R | 35 +++++++++--- README.md | 105 +++++++++++++++---------------------- build/vignette.rds |binary inst/doc/installation.html | 4 - inst/doc/pkgstats.html | 8 +- inst/js |only man/plot_network.Rd | 22 ++++--- tests/testthat/test-plot-network.R | 13 +++- 13 files changed, 244 insertions(+), 145 deletions(-)
Title: GDP - Workflow Management
Description: Tools, methods and processes for the management
of analysis workflows. These lightweight solutions facilitate
structuring R&D activities. These solutions were developed to comply
with Good Documentation Practice (GDP),
with ALCOA+ principles as proposed by the U.S. FDA, and
with FAIR principles as discussed by Jacobsen et al. (2017) <doi:10.1162/dint_r_00024>.
Author: Gregoire Thomas [aut, cre, cph] ,
Metabolomic Diagnostics Ltd. [fnd]
Maintainer: Gregoire Thomas <gregoire.thomas@SQU4RE.com>
Diff between D4TAlink.light versions 2.1.21 dated 2025-09-10 and 2.1.22 dated 2026-07-21
DESCRIPTION | 27 +++++++------- MD5 | 72 +++++++++++++++++++------------------- NEWS | 6 +++ R/D4TAlink-common-args-doc.R | 15 ++++--- build/vignette.rds |binary inst/doc/D4TAlink_basics.html | 9 ++-- inst/doc/D4TAlink_quickstart.html | 9 ++-- man/D4TAlink-common-args.Rd | 24 +++++++++++- man/binaryFn.Rd | 2 - man/catReport.Rd | 2 - man/docFn.Rd | 2 - man/getTaskFilepath.Rd | 2 - man/jpegReport.Rd | 5 ++ man/jpegReportFn.Rd | 2 - man/pdfReport.Rd | 2 - man/pdfReportFn.Rd | 2 - man/pngReport.Rd | 6 +++ man/pngReportFn.Rd | 2 - man/querySQLite.Rd | 2 - man/readBinary.Rd | 2 - man/readFeather.Rd | 2 - man/readPickle.Rd | 2 - man/readReportJSON.Rd | 2 - man/readReportTable.Rd | 2 - man/readSQLite.Rd | 2 - man/reportFn.Rd | 2 - man/reportXlsFn.Rd | 2 - man/saveBinary.Rd | 2 - man/saveBinaryE.Rd | 2 - man/saveFeather.Rd | 2 - man/savePickle.Rd | 2 - man/saveReportJSON.Rd | 2 - man/saveReportTable.Rd | 2 - man/saveReportXls.Rd | 2 - man/saveSQLite.Rd | 2 - man/scanReport.Rd | 2 - tests/testthat/test01.R | 28 +++++++++----- 37 files changed, 150 insertions(+), 103 deletions(-)
More information about D4TAlink.light at CRAN
Permanent link
Title: Continuous-Time Mediation
Description: Computes effect sizes, standard errors, and confidence intervals
for total, direct, and indirect effects in continuous-time mediation models
as described in Pesigan, Russell, and Chow (2025) <doi:10.1037/met0000779>.
Author: Ivan Jacob Agaloos Pesigan [aut, cre, cph] ,
Michael A. Russell [ctb] ,
Sy-Miin Chow [ctb]
Maintainer: Ivan Jacob Agaloos Pesigan <r.jeksterslab@gmail.com>
Diff between cTMed versions 1.0.9 dated 2026-02-05 and 1.0.10 dated 2026-07-21
cTMed-1.0.10/cTMed/DESCRIPTION | 10 cTMed-1.0.10/cTMed/MD5 | 349 +++-- cTMed-1.0.10/cTMed/NAMESPACE | 22 cTMed-1.0.10/cTMed/NEWS.md | 17 cTMed-1.0.10/cTMed/R/RcppExports.R | 64 cTMed-1.0.10/cTMed/R/cTMed-boot-beta-std.R | 22 cTMed-1.0.10/cTMed/R/cTMed-boot-beta.R | 19 cTMed-1.0.10/cTMed/R/cTMed-boot-central-dot.R | 10 cTMed-1.0.10/cTMed/R/cTMed-boot-central-std-dot.R |only cTMed-1.0.10/cTMed/R/cTMed-boot-direct-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-boot-direct-central.R |only cTMed-1.0.10/cTMed/R/cTMed-boot-indirect-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-boot-indirect-central.R | 27 cTMed-1.0.10/cTMed/R/cTMed-boot-med-std.R | 42 cTMed-1.0.10/cTMed/R/cTMed-boot-med.R | 35 cTMed-1.0.10/cTMed/R/cTMed-boot-total-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-boot-total-central.R | 27 cTMed-1.0.10/cTMed/R/cTMed-delta-beta-std-dot.R | 27 cTMed-1.0.10/cTMed/R/cTMed-delta-beta-std.R | 31 cTMed-1.0.10/cTMed/R/cTMed-delta-beta.R | 20 cTMed-1.0.10/cTMed/R/cTMed-delta-central-dot.R | 10 cTMed-1.0.10/cTMed/R/cTMed-delta-central-std-dot.R |only cTMed-1.0.10/cTMed/R/cTMed-delta-direct-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-delta-direct-central.R |only cTMed-1.0.10/cTMed/R/cTMed-delta-indirect-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-delta-indirect-central.R | 32 cTMed-1.0.10/cTMed/R/cTMed-delta-med-std-dot.R | 27 cTMed-1.0.10/cTMed/R/cTMed-delta-med-std.R | 51 cTMed-1.0.10/cTMed/R/cTMed-delta-med.R | 36 cTMed-1.0.10/cTMed/R/cTMed-delta-total-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-delta-total-central.R | 32 cTMed-1.0.10/cTMed/R/cTMed-direct-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-direct-central.R |only cTMed-1.0.10/cTMed/R/cTMed-direct-std.R | 3 cTMed-1.0.10/cTMed/R/cTMed-direct.R | 4 cTMed-1.0.10/cTMed/R/cTMed-indirect-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-indirect-central.R | 17 cTMed-1.0.10/cTMed/R/cTMed-indirect-std.R | 3 cTMed-1.0.10/cTMed/R/cTMed-indirect.R | 4 cTMed-1.0.10/cTMed/R/cTMed-mc-beta-std-dot.R | 25 cTMed-1.0.10/cTMed/R/cTMed-mc-beta-std.R | 27 cTMed-1.0.10/cTMed/R/cTMed-mc-beta.R | 20 cTMed-1.0.10/cTMed/R/cTMed-mc-central-dot.R | 10 cTMed-1.0.10/cTMed/R/cTMed-mc-central-std-dot.R |only cTMed-1.0.10/cTMed/R/cTMed-mc-direct-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-mc-direct-central.R |only cTMed-1.0.10/cTMed/R/cTMed-mc-indirect-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-mc-indirect-central.R | 26 cTMed-1.0.10/cTMed/R/cTMed-mc-med-std-dot.R | 25 cTMed-1.0.10/cTMed/R/cTMed-mc-med-std.R | 46 cTMed-1.0.10/cTMed/R/cTMed-mc-med.R | 39 cTMed-1.0.10/cTMed/R/cTMed-mc-phi-sigma.R | 38 cTMed-1.0.10/cTMed/R/cTMed-mc-phi.R | 4 cTMed-1.0.10/cTMed/R/cTMed-mc-total-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-mc-total-central.R | 26 cTMed-1.0.10/cTMed/R/cTMed-med-std.R | 31 cTMed-1.0.10/cTMed/R/cTMed-med.R | 29 cTMed-1.0.10/cTMed/R/cTMed-methods-ctmedboot.R | 25 cTMed-1.0.10/cTMed/R/cTMed-methods-ctmeddelta.R | 16 cTMed-1.0.10/cTMed/R/cTMed-methods-ctmedmc.R | 39 cTMed-1.0.10/cTMed/R/cTMed-methods-ctmedmed.R | 16 cTMed-1.0.10/cTMed/R/cTMed-plot-beta-ci-dot.R | 11 cTMed-1.0.10/cTMed/R/cTMed-plot-central-ci-dot.R | 32 cTMed-1.0.10/cTMed/R/cTMed-plot-central-dot.R | 14 cTMed-1.0.10/cTMed/R/cTMed-plot-med-ci-dot.R | 6 cTMed-1.0.10/cTMed/R/cTMed-plot-med-dot.R | 4 cTMed-1.0.10/cTMed/R/cTMed-plot-trajectory-dot.R | 4 cTMed-1.0.10/cTMed/R/cTMed-posterior-beta-std-dot.R |only cTMed-1.0.10/cTMed/R/cTMed-posterior-beta-std.R |only cTMed-1.0.10/cTMed/R/cTMed-posterior-beta.R | 20 cTMed-1.0.10/cTMed/R/cTMed-posterior-central-dot.R | 10 cTMed-1.0.10/cTMed/R/cTMed-posterior-central-std-dot.R |only cTMed-1.0.10/cTMed/R/cTMed-posterior-direct-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-posterior-direct-central.R |only cTMed-1.0.10/cTMed/R/cTMed-posterior-indirect-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-posterior-indirect-central.R | 32 cTMed-1.0.10/cTMed/R/cTMed-posterior-med-std.R |only cTMed-1.0.10/cTMed/R/cTMed-posterior-med.R | 34 cTMed-1.0.10/cTMed/R/cTMed-posterior-total-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-posterior-total-central.R | 28 cTMed-1.0.10/cTMed/R/cTMed-total-central-std.R |only cTMed-1.0.10/cTMed/R/cTMed-total-central.R | 17 cTMed-1.0.10/cTMed/R/cTMed-total-std.R | 7 cTMed-1.0.10/cTMed/R/cTMed-total.R | 6 cTMed-1.0.10/cTMed/R/cTMed-trajectory.R | 7 cTMed-1.0.10/cTMed/build/partial.rdb |binary cTMed-1.0.10/cTMed/man/BootBeta.Rd | 95 - cTMed-1.0.10/cTMed/man/BootBetaStd.Rd | 106 + cTMed-1.0.10/cTMed/man/BootDirectCentral.Rd |only cTMed-1.0.10/cTMed/man/BootDirectCentralStd.Rd |only cTMed-1.0.10/cTMed/man/BootIndirectCentral.Rd | 97 - cTMed-1.0.10/cTMed/man/BootIndirectCentralStd.Rd |only cTMed-1.0.10/cTMed/man/BootMed.Rd | 95 - cTMed-1.0.10/cTMed/man/BootMedStd.Rd | 98 - cTMed-1.0.10/cTMed/man/BootTotalCentral.Rd | 97 - cTMed-1.0.10/cTMed/man/BootTotalCentralStd.Rd |only cTMed-1.0.10/cTMed/man/DeltaBeta.Rd | 96 - cTMed-1.0.10/cTMed/man/DeltaBetaStd.Rd | 112 + cTMed-1.0.10/cTMed/man/DeltaDirectCentral.Rd |only cTMed-1.0.10/cTMed/man/DeltaDirectCentralStd.Rd |only cTMed-1.0.10/cTMed/man/DeltaIndirectCentral.Rd | 98 - cTMed-1.0.10/cTMed/man/DeltaIndirectCentralStd.Rd |only cTMed-1.0.10/cTMed/man/DeltaMed.Rd | 96 - cTMed-1.0.10/cTMed/man/DeltaMedStd.Rd | 105 - cTMed-1.0.10/cTMed/man/DeltaTotalCentral.Rd | 98 - cTMed-1.0.10/cTMed/man/DeltaTotalCentralStd.Rd |only cTMed-1.0.10/cTMed/man/Direct.Rd | 91 - cTMed-1.0.10/cTMed/man/DirectCentral.Rd |only cTMed-1.0.10/cTMed/man/DirectCentralStd.Rd |only cTMed-1.0.10/cTMed/man/DirectStd.Rd | 91 - cTMed-1.0.10/cTMed/man/Indirect.Rd | 91 - cTMed-1.0.10/cTMed/man/IndirectCentral.Rd | 93 - cTMed-1.0.10/cTMed/man/IndirectCentralStd.Rd |only cTMed-1.0.10/cTMed/man/IndirectStd.Rd | 91 - cTMed-1.0.10/cTMed/man/MCBeta.Rd | 96 - cTMed-1.0.10/cTMed/man/MCBetaStd.Rd | 105 - cTMed-1.0.10/cTMed/man/MCDirectCentral.Rd |only cTMed-1.0.10/cTMed/man/MCDirectCentralStd.Rd |only cTMed-1.0.10/cTMed/man/MCIndirectCentral.Rd | 96 - cTMed-1.0.10/cTMed/man/MCIndirectCentralStd.Rd |only cTMed-1.0.10/cTMed/man/MCMed.Rd | 95 - cTMed-1.0.10/cTMed/man/MCMedStd.Rd | 104 - cTMed-1.0.10/cTMed/man/MCPhi.Rd | 95 - cTMed-1.0.10/cTMed/man/MCPhiSigma.Rd | 104 - cTMed-1.0.10/cTMed/man/MCTotalCentral.Rd | 96 - cTMed-1.0.10/cTMed/man/MCTotalCentralStd.Rd |only cTMed-1.0.10/cTMed/man/Med.Rd | 93 - cTMed-1.0.10/cTMed/man/MedStd.Rd | 93 - cTMed-1.0.10/cTMed/man/PosteriorBeta.Rd | 96 - cTMed-1.0.10/cTMed/man/PosteriorBetaStd.Rd |only cTMed-1.0.10/cTMed/man/PosteriorDirectCentral.Rd |only cTMed-1.0.10/cTMed/man/PosteriorDirectCentralStd.Rd |only cTMed-1.0.10/cTMed/man/PosteriorIndirectCentral.Rd | 102 - cTMed-1.0.10/cTMed/man/PosteriorIndirectCentralStd.Rd |only cTMed-1.0.10/cTMed/man/PosteriorMed.Rd | 96 - cTMed-1.0.10/cTMed/man/PosteriorMedStd.Rd |only cTMed-1.0.10/cTMed/man/PosteriorTotalCentral.Rd | 98 - cTMed-1.0.10/cTMed/man/PosteriorTotalCentralStd.Rd |only cTMed-1.0.10/cTMed/man/Total.Rd | 91 - cTMed-1.0.10/cTMed/man/TotalCentral.Rd | 93 - cTMed-1.0.10/cTMed/man/TotalCentralStd.Rd |only cTMed-1.0.10/cTMed/man/TotalStd.Rd | 91 - cTMed-1.0.10/cTMed/man/Trajectory.Rd | 98 - cTMed-1.0.10/cTMed/man/cTMed-package.Rd | 5 cTMed-1.0.10/cTMed/man/confint.ctmedboot.Rd | 2 cTMed-1.0.10/cTMed/man/plot.ctmedboot.Rd | 2 cTMed-1.0.10/cTMed/man/print.ctmedboot.Rd | 2 cTMed-1.0.10/cTMed/man/summary.ctmedboot.Rd | 2 cTMed-1.0.10/cTMed/src/RcppExports.cpp | 201 ++ cTMed-1.0.10/cTMed/src/source.cpp | 673 +++++++++- cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-boot-beta-std.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-boot-beta.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-boot-direct-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-boot-direct-central.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-boot-indirect-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-boot-indirect-central.R | 13 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-boot-med-std.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-boot-med.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-boot-total-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-boot-total-central.R | 13 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-delta-beta-std-diag.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-delta-beta-std.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-delta-beta.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-delta-direct-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-delta-direct-central.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-delta-indirect-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-delta-indirect-central.R | 15 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-delta-med-std-diag.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-delta-med-std.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-delta-med.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-delta-total-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-delta-total-central.R | 15 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-direct-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-direct-central.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-direct-std.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-direct.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-indirect-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-indirect-central.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-indirect-std.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-indirect.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-beta-std-diag.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-beta-std.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-beta.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-direct-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-direct-central.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-indirect-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-indirect-central.R | 15 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-med-std-diag.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-med-std.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-med.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-phi-sigma-diag.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-phi-sigma.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-phi.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-total-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-mc-total-central.R | 15 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-posterior-beta-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-posterior-beta.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-posterior-direct-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-posterior-direct-central.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-posterior-indirect-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-posterior-indirect-central.R | 15 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-posterior-med-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-posterior-med.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-posterior-total-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-posterior-total-central.R | 15 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-test-stable.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-total-central-std.R |only cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-total-central.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-total-std.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-total.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-trajectory.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-wald-ci-dot.R | 7 cTMed-1.0.10/cTMed/tests/testthat/test-cTMed-wald-probs-of-alpha-dot.R | 7 cTMed-1.0.9/cTMed/tests/testthat/test-cTMed.R |only 214 files changed, 4144 insertions(+), 2062 deletions(-)
Title: Open Trade Statistics API Wrapper and Utility Program
Description: Access 'Open Trade Statistics' API from R to download
international trade data.
Author: Mauricio Vargas [aut, cre, cph] ,
Joshua Kunst [ctb] ,
Alexey Kravchenko [ctb] ,
Emma Mendelsohn [ctb] ,
Daniela de los Santos [ctb] ,
Emily Riederer [rev] ,
Mark Padgham [rev] ,
Amanda Dobbyn [rev] ,
Jorge Cimentada [rev] ,
UN Comtrade [dtc],
The Wo [...truncated...]
Maintainer: Mauricio Vargas <m.vargas.sepulveda@gmail.com>
Diff between tradestatistics versions 7.0.0 dated 2026-07-07 and 7.1.0 dated 2026-07-21
DESCRIPTION | 6 +-- MD5 | 10 ++--- NEWS.md | 5 ++ R/ots_create_tidy_data.R | 6 ++- data/ots_countries.rda |binary inst/doc/basic-usage.html | 79 +++++++++++++++++++++++++++------------------- 6 files changed, 66 insertions(+), 40 deletions(-)
More information about tradestatistics at CRAN
Permanent link
Title: Template Model Builder: A General Random Effect Tool Inspired by
'ADMB'
Description: With this tool, a user should be able to quickly implement
complex random effect models through simple C++ templates. The package combines
'CppAD' (C++ automatic differentiation), 'Eigen' (templated matrix-vector
library) and 'CHOLMOD' (sparse matrix routines available from R) to obtain
an efficient implementation of the applied Laplace approximation with exact
derivatives. Key features are: Automatic sparseness detection, parallelism
through 'BLAS' and parallel user templates.
Author: Kasper Kristensen [aut, cre, cph],
Brad Bell [cph],
Hans Skaug [ctb],
Arni Magnusson [ctb],
Casper Berg [ctb],
Anders Nielsen [ctb],
Martin Maechler [ctb],
Theo Michelot [ctb],
Mollie Brooks [ctb],
Alex Forrence [ctb],
Christoffer Moesgaard Albertsen [...truncated...]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between TMB versions 1.9.21 dated 2026-03-23 and 1.9.22 dated 2026-07-21
DESCRIPTION | 8 - MD5 | 32 ++-- NEWS | 12 + R/TMB.R | 200 ++++++++++++++++++++++++++++-- inst/include/TMBad/TMBad.cpp | 6 inst/include/TMBad/graph_transform.hpp | 3 inst/include/convert.hpp | 3 inst/include/distributions_R.hpp | 42 ++++++ inst/include/tiny_ad/atomic.hpp | 12 + inst/include/tiny_ad/compois/combinom.hpp |only inst/include/tiny_ad/tiny_ad/tiny_ad.hpp | 10 - inst/include/tmbutils/R_inla.hpp | 2 inst/include/tmbutils/density.hpp | 18 +- man/runSymbolicAnalysis.Rd | 23 +++ src/Makevars | 4 src/ichol.cpp |only src/init.c | 17 ++ src/utils.c | 23 --- 18 files changed, 349 insertions(+), 66 deletions(-)
Title: Steve's R Markdown Templates
Description: These are my collection of 'R Markdown' templates, mostly for compilation to PDF.
These are useful for all things academic and professional, if you are using 'R Markdown'
for things like your CV or your articles and manuscripts.
Author: Steven Miller [aut, cre]
Maintainer: Steven Miller <steve@svmiller.com>
Diff between stevetemplates versions 1.3.0 dated 2026-05-29 and 1.4.0 dated 2026-07-21
DESCRIPTION | 6 MD5 | 18 +- NEWS.md | 8 + R/article2.R | 11 + R/article3.R | 11 + inst/rmarkdown/templates/article2/resources/template.tex | 104 +++++++-------- inst/rmarkdown/templates/article2/skeleton/skeleton.Rmd | 7 - inst/rmarkdown/templates/article3/resources/template.tex | 69 ++++----- man/article2.Rd | 10 + man/article3.Rd | 11 + 10 files changed, 142 insertions(+), 113 deletions(-)
More information about stevetemplates at CRAN
Permanent link
Title: Quantitative Trait Locus Mapping in Experimental Crosses
Description: Provides a set of tools to perform quantitative
trait locus (QTL) analysis in experimental crosses. It is a
reimplementation of the 'R/qtl' package to better handle
high-dimensional data and complex cross designs.
Broman et al. (2019) <doi:10.1534/genetics.118.301595>.
Author: Karl W Broman [aut, cre] ,
R Core Team [ctb]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between qtl2 versions 0.44 dated 2026-07-06 and 0.46 dated 2026-07-21
DESCRIPTION | 8 - MD5 | 65 ++++++------- NEWS.md | 14 ++ R/chr_lengths.R | 13 ++ R/cluster_util.R | 2 R/qtl2-package.R | 1 R/scan1gen.R | 2 R/scan1perm.R | 3 README.md | 1 man/chr_lengths.Rd | 3 man/qtl2-package.Rd | 1 man/scan1gen.Rd | 2 man/scan1perm.Rd | 2 tests/testthat/_snaps/plot_genes/plot-genes-2.svg |only tests/testthat/test-calc_geno_freq.R | 49 +++------- tests/testthat/test-calc_hotspots.R | 2 tests/testthat/test-calcerrorlod.R | 39 +++----- tests/testthat/test-chr_lengths.R | 17 +++ tests/testthat/test-compare_geno.R | 14 +- tests/testthat/test-compare_maps.R | 1 tests/testthat/test-control_files.R | 61 ++++-------- tests/testthat/test-count_xo.R | 8 - tests/testthat/test-create_gene_query_func.R | 14 +- tests/testthat/test-create_variant_query_func.R | 3 tests/testthat/test-est_herit.R | 2 tests/testthat/test-find_index_snp.R | 1 tests/testthat/test-find_peaks.R | 11 -- tests/testthat/test-io.R | 23 ++-- tests/testthat/test-n_missing.R | 20 +--- tests/testthat/test-plot_genes.R | 2 tests/testthat/test-reduce_markers.R | 107 ++++++++++------------ tests/testthat/test-scan1_pg.R | 34 +++--- tests/testthat/test-scan1snps.R | 14 +- tests/testthat/test-simgeno.R | 8 - 34 files changed, 271 insertions(+), 276 deletions(-)
Title: Mutation Testing
Description: Measure quality of your tests.
'muttest' introduces small changes (mutations) to your code
and runs your tests to check if they catch the changes.
If they do, your tests are good.
If not, your assertions are not specific enough.
'muttest' gives you percent score of how often your tests catch the changes.
Author: Jakub Sobolewski [aut, cre]
Maintainer: Jakub Sobolewski <jakupsob@gmail.com>
Diff between muttest versions 0.2.1 dated 2026-06-24 and 0.3.0 dated 2026-07-21
DESCRIPTION | 17 +-- MD5 | 114 +++++++++++++----------- NAMESPACE | 5 + NEWS.md | 11 ++ R/mutator-operator.R | 65 ------------- R/mutator-statement.R | 2 R/mutator.R | 82 ++++++++++++++++- R/muttest.R | 72 ++++++++++----- R/project_copy_strategy.R | 55 ++++++++--- R/report-html.R |only R/reporter-json.R |only R/reporter-multi.R |only R/reporter-progress.R | 81 +++++++++-------- R/reporter.R | 30 ++++-- R/test_strategy.R | 12 ++ README.md | 17 +-- build/vignette.rds |binary inst/doc/ci-integration.html | 3 inst/doc/getting-started.Rmd | 5 - inst/doc/getting-started.html | 39 +++++--- inst/doc/interpreting-results.Rmd | 17 +++ inst/doc/interpreting-results.html | 101 ++++++++++++--------- inst/doc/mutation-testing-101.Rmd | 15 +-- inst/doc/mutation-testing-101.html | 19 ++-- inst/doc/mutators.html | 52 +++++----- inst/examples/shipping/R/discount.R |only inst/report |only inst/schema |only man/JSONMutationReporter.Rd |only man/MultiReporter.Rd |only man/MutationReporter.Rd | 23 +--- man/Mutator.Rd | 6 - man/PackageCopyStrategy.Rd | 26 +++++ man/ProgressMutationReporter.Rd | 21 +--- man/default_reporter.Rd | 2 man/muttest.Rd | 8 - man/muttest_plan.Rd | 4 man/report.Rd |only tests/acceptance/test_package.feature | 20 ++-- tests/testthat/_snaps/muttest.md | 19 +++- tests/testthat/_snaps/report-html |only tests/testthat/_snaps/reporter-json |only tests/testthat/_snaps/test_reporter-progress.md | 22 ++-- tests/testthat/setup-expect.R | 9 + tests/testthat/test-mutator-boolean.R | 4 tests/testthat/test-mutator-call.R | 4 tests/testthat/test-mutator-condition.R | 14 +- tests/testthat/test-mutator-index.R | 6 - tests/testthat/test-mutator-na.R | 6 - tests/testthat/test-mutator-numeric.R | 6 - tests/testthat/test-mutator-operator.R | 11 -- tests/testthat/test-mutator-return.R | 4 tests/testthat/test-mutator-statement.R | 6 - tests/testthat/test-mutator-string.R | 6 - tests/testthat/test-mutator-unary.R | 4 tests/testthat/test-muttest.R | 31 +++++- tests/testthat/test-project_copy_strategy.R | 42 ++++++++ tests/testthat/test-report-html.R |only tests/testthat/test-reporter-json.R |only tests/testthat/test-reporter-multi.R |only tests/testthat/test-test_strategy.R | 44 +++++++++ vignettes/getting-started.Rmd | 5 - vignettes/interpreting-results.Rmd | 17 +++ vignettes/mutation-testing-101.Rmd | 15 +-- 64 files changed, 766 insertions(+), 433 deletions(-)
Title: Generation and Analysis of 3-Level, 4-Level and 5-Level
Factorial Block Designs
Description: Provides tools to generate and analyze 3-level, 4-level and
5-level linear factorial block designs, including complete factorial layouts,
fractional factorial layouts, confounded factorial layouts, and
design-characteristic summaries. The package includes utilities for
recursive construction, defining-contrast identification, alias and
confounding summaries, incidence matrix construction, and selected
design-characteristic diagnostics. The methodological framework follows
foundational work on factorial block designs, including Gupta (1983)
<doi:10.1111/j.2517-6161.1983.tb01253.x>.
Author: Vankudoth Kumar [aut],
Sukanta Dash [aut, cre],
Med Ram Verma [aut]
Maintainer: Sukanta Dash <sukanta.iasri@gmail.com>
Diff between lfebd3 versions 0.2.0 dated 2026-05-07 and 0.3.0 dated 2026-07-21
lfebd3-0.2.0/lfebd3/man/build_triplet.Rd |only lfebd3-0.2.0/lfebd3/man/canonical_effect.Rd |only lfebd3-0.2.0/lfebd3/man/defining_subgroup.Rd |only lfebd3-0.2.0/lfebd3/man/direct_aliases_from_dc.Rd |only lfebd3-0.2.0/lfebd3/man/effect_aliases_low_order.Rd |only lfebd3-0.2.0/lfebd3/man/effect_label.Rd |only lfebd3-0.2.0/lfebd3/man/effect_order.Rd |only lfebd3-0.2.0/lfebd3/man/find_defining_contrasts.Rd |only lfebd3-0.2.0/lfebd3/man/fractional_confounding_summary.Rd |only lfebd3-0.2.0/lfebd3/man/generate_effect_catalog.Rd |only lfebd3-0.2.0/lfebd3/man/is_independent_mod3.Rd |only lfebd3-0.2.0/lfebd3/man/low_order_aliases_from_subgroup.Rd |only lfebd3-0.2.0/lfebd3/man/rank_mod3.Rd |only lfebd3-0.2.0/lfebd3/man/reduce_once.Rd |only lfebd3-0.2.0/lfebd3/man/reduce_repeated.Rd |only lfebd3-0.3.0/lfebd3/DESCRIPTION | 14 lfebd3-0.3.0/lfebd3/MD5 | 80 lfebd3-0.3.0/lfebd3/NAMESPACE | 13 lfebd3-0.3.0/lfebd3/NEWS.md | 67 lfebd3-0.3.0/lfebd3/R/lfebd.R | 8235 +++++----- lfebd3-0.3.0/lfebd3/man/FactChar.Rd | 8 lfebd3-0.3.0/lfebd3/man/T_design.Rd |only lfebd3-0.3.0/lfebd3/man/generate_Tn_full.Rd | 70 lfebd3-0.3.0/lfebd3/man/get_Tn_square.Rd | 14 lfebd3-0.3.0/lfebd3/man/lfebd.defining.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd.independent.confound.effects.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd3-package.Rd | 15 lfebd3-0.3.0/lfebd3/man/lfebd3.Rd | 21 lfebd3-0.3.0/lfebd3/man/lfebd3.cf.Rd | 32 lfebd3-0.3.0/lfebd3/man/lfebd3.cf.full.Rd | 36 lfebd3-0.3.0/lfebd3/man/lfebd3.ff.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd3.fr.Rd | 40 lfebd3-0.3.0/lfebd3/man/lfebd3_T_design.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd3_analyze.Rd | 69 lfebd3-0.3.0/lfebd3/man/lfebd3_factor_relations.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd3_gf3_nullspace.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd3_gf3_rref.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd3_mod3.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd3_normalize_defining_vector.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd3_order_from_vector.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd3_select_rows.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd3_select_rows_CF_first.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd3_to_run_table.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd3_word_from_vector.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd4.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd4.cf.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd4.cf.full.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd4.ff.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd4.fr.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd4_Tstep.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd4_add4.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd4_analyze.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd4_defining.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd4_independent_confound_effects.Rd |only lfebd3-0.3.0/lfebd3/man/lfebd4_to_run_table.Rd |only lfebd3-0.3.0/lfebd3/man/print.lfebd3_analyze_result.Rd | 18 lfebd3-0.3.0/lfebd3/man/print.lfebd3_cf_design.Rd |only lfebd3-0.3.0/lfebd3/man/print.lfebd3_cf_principal.Rd |only lfebd3-0.3.0/lfebd3/man/print.lfebd3_fr.Rd | 14 lfebd3-0.3.0/lfebd3/man/print.lfebd4_analyze_result.Rd |only lfebd3-0.3.0/lfebd3/man/print.lfebd4_cf_design.Rd |only lfebd3-0.3.0/lfebd3/man/print.lfebd4_cf_principal.Rd |only lfebd3-0.3.0/lfebd3/man/print.lfebd4_fr_design.Rd |only lfebd3-0.3.0/lfebd3/tests |only 64 files changed, 4757 insertions(+), 3989 deletions(-)
Title: R Bindings to the Calendaring Functionality of 'QuantLib'
Description: 'QuantLib' bindings are provided for R using 'Rcpp' via an evolved version
of the initial header-only 'Quantuccia' project offering an subset of 'QuantLib' (now
maintained separately just for the calendaring subset). See the included file 'AUTHORS'
for a full list of contributors to 'QuantLib' (and hence also 'Quantuccia').
Author: Dirk Eddelbuettel [aut, cre] ,
QuantLib Authors [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between qlcal versions 0.1.2 dated 2026-07-14 and 0.1.3 dated 2026-07-21
ChangeLog | 12 ++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- build/partial.rdb |binary inst/NEWS.Rd | 12 ++++++++++-- src/Makevars.in | 2 +- src/ql/time/calendars/islamicholidays.cpp | 1 + tools/configure.R | 8 ++++++++ 8 files changed, 43 insertions(+), 14 deletions(-)
Title: Compute and Visualize Profile Extrema Functions
Description: Computes profile extrema functions for arbitrary functions. If the function is expensive-to-evaluate it computes profile extrema by emulating the function with a Gaussian process (using package 'DiceKriging'). In this case uncertainty quantification on the profile extrema can also be computed. The different plotting functions for profile extrema give the user a tool to better locate excursion sets.
Author: Dario Azzimonti [aut, cre, cph]
Maintainer: Dario Azzimonti <dario.azzimonti@gmail.com>
Diff between profExtrema versions 0.2.1 dated 2020-03-21 and 0.2.2 dated 2026-07-21
profExtrema-0.2.1/profExtrema/R/help.R |only profExtrema-0.2.2/profExtrema/DESCRIPTION | 16 - profExtrema-0.2.2/profExtrema/MD5 | 85 ++++---- profExtrema-0.2.2/profExtrema/NEWS.md | 6 profExtrema-0.2.2/profExtrema/R/bound_functions.R | 4 profExtrema-0.2.2/profExtrema/R/cleanProfiles.R | 8 profExtrema-0.2.2/profExtrema/R/coordProf_UQ.R | 34 +-- profExtrema-0.2.2/profExtrema/R/coordinateProfiles.R | 16 - profExtrema-0.2.2/profExtrema/R/data.R | 2 profExtrema-0.2.2/profExtrema/R/getMaxNumOpt.R | 64 +++--- profExtrema-0.2.2/profExtrema/R/getProfiles_optim.R | 12 - profExtrema-0.2.2/profExtrema/R/gradKm.R | 6 profExtrema-0.2.2/profExtrema/R/graphicsFuns.R | 4 profExtrema-0.2.2/profExtrema/R/obliqueProf_UQ.R | 34 +-- profExtrema-0.2.2/profExtrema/R/obliqueProfiles.R | 16 - profExtrema-0.2.2/profExtrema/R/plot_univariate_profiles_UQ.R | 44 ++-- profExtrema-0.2.2/profExtrema/R/profExtrema-package.R |only profExtrema-0.2.2/profExtrema/R/profExtremaNumOpt.R | 36 +-- profExtrema-0.2.2/profExtrema/README.md | 97 +++++++--- profExtrema-0.2.2/profExtrema/man/approxMaxMin.Rd | 28 +- profExtrema-0.2.2/profExtrema/man/approxProfileExtrema.Rd | 26 +- profExtrema-0.2.2/profExtrema/man/bound_profiles.Rd | 16 + profExtrema-0.2.2/profExtrema/man/cleanProfileResults.Rd | 8 profExtrema-0.2.2/profExtrema/man/coastal_flooding.Rd | 8 profExtrema-0.2.2/profExtrema/man/coordProf_UQ.Rd | 52 +++-- profExtrema-0.2.2/profExtrema/man/coordinateProfiles.Rd | 31 ++- profExtrema-0.2.2/profExtrema/man/getAllMaxMin.Rd | 10 - profExtrema-0.2.2/profExtrema/man/getChangePoints.Rd | 4 profExtrema-0.2.2/profExtrema/man/getMax.Rd | 8 profExtrema-0.2.2/profExtrema/man/getMaxMinMC.Rd | 10 - profExtrema-0.2.2/profExtrema/man/getMin.Rd | 8 profExtrema-0.2.2/profExtrema/man/getProfileExtrema.Rd | 10 - profExtrema-0.2.2/profExtrema/man/getProfileInf_optim.Rd | 6 profExtrema-0.2.2/profExtrema/man/getProfileSup_optim.Rd | 6 profExtrema-0.2.2/profExtrema/man/gradKm_dnewdata.Rd | 16 + profExtrema-0.2.2/profExtrema/man/obliqueProf_UQ.Rd | 53 +++-- profExtrema-0.2.2/profExtrema/man/obliqueProfiles.Rd | 32 ++- profExtrema-0.2.2/profExtrema/man/plotBivariateProfiles.Rd | 11 - profExtrema-0.2.2/profExtrema/man/plotMaxMin.Rd | 10 - profExtrema-0.2.2/profExtrema/man/plotOneBivProfile.Rd | 11 - profExtrema-0.2.2/profExtrema/man/plot_univariate_profiles_UQ.Rd | 19 + profExtrema-0.2.2/profExtrema/man/profExtrema-package.Rd |only profExtrema-0.2.2/profExtrema/man/profExtrema.Rd | 6 profExtrema-0.2.2/profExtrema/man/prof_mean_var_Delta.Rd | 12 - profExtrema-0.2.2/profExtrema/man/setPlotOptions.Rd | 38 +-- 45 files changed, 526 insertions(+), 397 deletions(-)
Title: Multivariate Methods Based on the Oja Median and Related
Concepts
Description: Calculating the Oja median, Oja signs and ranks and methods based upon them. For details, see the the corresponding publication Fischer, Mosler, et al. (2020) <doi:10.18637/jss.v092.i08>.
Author: Daniel Fischer [aut, cre] ,
Juho Eagling [aut] ,
Karl Mosler [aut] ,
Jyrki Moettoenen [aut] ,
Klaus Nordhausen [aut] ,
Oleksii Pokotylo [aut] ,
Daniel Vogel [aut],
Tommi Ronkainen [ctb] ,
Makoto Matsumoto [ctb, cph] ,
Takuji Nishimura [ctb, cph] ,
Shaw [...truncated...]
Maintainer: Daniel Fischer <daniel.fischer@luke.fi>
This is a re-admission after prior archival of version 1.0-0 dated 2020-02-23
Diff between OjaNP versions 1.0-0 dated 2020-02-23 and 2.0 dated 2026-07-21
DESCRIPTION | 91 +++++++++++++++++++++++++++++--- MD5 | 62 ++++++++++++---------- R/createHyperplaneSample.R | 80 +++++++++++++++++++--------- R/ojaMedian.control.R | 2 demo/00Index | 3 - demo/ojaMedianDemo.R | 2 demo/paper-section-4.2.R |only inst/ChangeLog | 5 + man/OjaNP-package.Rd | 6 +- man/ojaMedianControl.Rd | 6 +- man/ojaRCM.Rd | 8 +- man/ojaRank.Rd | 8 -- man/ojaSCM.Rd | 2 man/ojaSign.Rd | 2 src/MersenneTwister.h | 8 +- src/algorithms.cpp | 85 +++++++++--------------------- src/bounded_search.cpp | 6 -- src/det.c | 4 + src/global.h | 16 +++-- src/index.cpp | 7 +- src/interface.cpp | 20 +++---- src/interface.h | 6 +- src/lattice.h | 2 src/matrix.h | 2 src/oja_geometry.cpp | 4 - src/ojasr.c | 125 +++++++++++++++++++++++---------------------- src/random.cpp | 18 +----- src/vkm.cpp | 9 ++- tests |only 29 files changed, 337 insertions(+), 252 deletions(-)
Title: Analysis of Antimicrobial Minimum Inhibitory Concentration Data
Description: Analyse, plot, and tabulate antimicrobial minimum inhibitory concentration (MIC) data.
Validate the results of an MIC experiment by comparing observed MIC values to
a gold standard assay, in line with standards from the International Organization for
Standardization (2021) <https://www.iso.org/standard/79377.html>.
Author: Alessandro Gerada [aut, cre, cph]
Maintainer: Alessandro Gerada <alessandro.gerada2@liverpool.ac.uk>
Diff between MIC versions 2.0.0 dated 2025-12-04 and 2.0.1 dated 2026-07-21
DESCRIPTION | 12 ++++++------ MD5 | 6 +++--- NEWS.md | 4 ++++ man/MIC-package.Rd | 7 ++++++- 4 files changed, 19 insertions(+), 10 deletions(-)
More information about dryingkineticmodels at CRAN
Permanent link
Title: Beta Product Confidence Procedure for Right Censored Data
Description: Calculates nonparametric pointwise confidence intervals for the survival distribution for right censored data, and for medians [Fay and Brittain <DOI:10.1002/sim.6905>]. Has two-sample tests for dissimilarity (e.g., difference, ratio or odds ratio) in survival at a fixed time, and differences in medians [Fay, Proschan, and Brittain <DOI:10.1111/biom.12231>]. Basically, the package gives exact inference methods for one- and two-sample exact inferences for Kaplan-Meier curves (e.g., generalizing Fisher's exact test to allow for right censoring), which are especially important for latter parts of the survival curve, small sample sizes or heavily censored data. Includes mid-p options.
Author: Michael P. Fay [aut, cre],
Allyson Mateja [ctb],
Megan Grieco [ctb]
Maintainer: Michael P. Fay <mfay@niaid.nih.gov>
Diff between bpcp versions 1.5.1 dated 2026-02-19 and 1.5.4 dated 2026-07-21
bpcp-1.5.1/bpcp/demo/Simulation2025_cancerdata.R |only bpcp-1.5.1/bpcp/demo/Simulation2025_discrete.R |only bpcp-1.5.1/bpcp/demo/Simulation2025_discrete_difference.R |only bpcp-1.5.1/bpcp/demo/Simulation2025_discrete_summary.R |only bpcp-1.5.4/bpcp/DESCRIPTION | 8 +- bpcp-1.5.4/bpcp/MD5 | 42 +++++++------ bpcp-1.5.4/bpcp/NEWS | 14 ++++ bpcp-1.5.4/bpcp/R/bpcp2sample.R | 7 +- bpcp-1.5.4/bpcp/R/delta2samp.R | 30 ++++++--- bpcp-1.5.4/bpcp/build/vignette.rds |binary bpcp-1.5.4/bpcp/demo/00Index | 16 ++--- bpcp-1.5.4/bpcp/demo/Calculation2025_no_censoring.R | 33 +++++----- bpcp-1.5.4/bpcp/demo/Calculation2026_no_censoring.R |only bpcp-1.5.4/bpcp/demo/PlottingTransformationFigures.R | 44 -------------- bpcp-1.5.4/bpcp/demo/Sim2026_functions.R |only bpcp-1.5.4/bpcp/demo/Simulation2026_discrete_functions.R |only bpcp-1.5.4/bpcp/demo/Simulation2026_discrete_summary.R |only bpcp-1.5.4/bpcp/demo/sim2026_plotResults.R |only bpcp-1.5.4/bpcp/demo/sim2026_runCode.R |only bpcp-1.5.4/bpcp/inst/doc/discreteBPCP.R | 2 bpcp-1.5.4/bpcp/inst/doc/discreteBPCP.pdf |binary bpcp-1.5.4/bpcp/man/kmci.object.Rd | 2 bpcp-1.5.4/bpcp/man/kmciLR.object.Rd | 2 bpcp-1.5.4/bpcp/man/kmciLRgroup.object.Rd | 2 bpcp-1.5.4/bpcp/man/kmciLRtidy.object.Rd | 2 bpcp-1.5.4/bpcp/man/twosamp.object.Rd | 2 bpcp-1.5.4/bpcp/tests/testthat/test-bpcp2sample.R | 2 27 files changed, 98 insertions(+), 110 deletions(-)
Title: Biochar Characterisation and Adsorption Data Analysis
Description: A toolkit for analysing biochar characterisation and batch
adsorption experiments. Provides functions to parse structured sample
identifiers encoding pyrolysis conditions, read raw FTIR and XRD
instrument output, compute adsorption capacity and removal efficiency,
fit adsorption isotherms following Langmuir (1918)
<doi:10.1021/ja02242a004> and Sips (1948) <doi:10.1063/1.1746922>
among other models, fit adsorption kinetics following Ho and McKay
(1999) <doi:10.1016/S0032-9592(98)00112-5> and Chien and Clayton
(1980) <doi:10.2136/sssaj1980.03615995004400020013x> among other
models, fit batches of samples at once, compute van't Hoff
thermodynamic parameters, baseline-correct and pick peaks in FTIR
spectra, deconvolve XRD patterns into a crystallinity index, compute
BET surface area following Brunauer, Emmett, and Teller (1938)
<doi:10.1021/ja01269a023>, compute proximate and ultimate analysis
summaries including directly from a thermogravimetric analysis (TGA [...truncated...]
Author: Sukamal Sarkar [aut, cre]
Maintainer: Sukamal Sarkar <sukamal.sarkar@gm.rkmvu.ac.in>
Diff between biocharkit versions 0.2.0 dated 2026-07-21 and 0.3.0 dated 2026-07-21
DESCRIPTION | 16 ++++-- MD5 | 34 +++++++++---- NAMESPACE | 10 ++++ NEWS.md | 35 ++++++++++++++ R/biocharkit-package.R | 2 R/plotting.R | 49 +++++++++++++++++++ R/tga.R |only inst/WORDLIST | 14 +++++ inst/doc/biocharkit-intro.R | 24 +++++++++ inst/doc/biocharkit-intro.Rmd | 42 ++++++++++++++++- inst/doc/biocharkit-intro.html | 91 +++++++++++++++++++++++++++++-------- man/assign_dtg_peaks.Rd |only man/biocharkit-package.Rd | 2 man/find_dtg_peaks.Rd |only man/plot_tga.Rd |only man/read_tga_txt.Rd |only man/tga_decomposition_reference.Rd |only man/tga_dtg.Rd |only man/tga_kinetics_kissinger.Rd |only man/tga_normalize.Rd |only man/tga_stages.Rd |only man/tga_stages_batch.Rd |only tests/testthat/test-tga.R |only vignettes/biocharkit-intro.Rmd | 42 ++++++++++++++++- 24 files changed, 323 insertions(+), 38 deletions(-)
Title: Plot FTIR Spectra
Description: The goal of 'PlotFTIR' is to easily and quickly kick-start the production of journal-quality Fourier Transform Infra-Red (FTIR) spectral plots in R using 'ggplot2'. The produced plots can be published directly or further modified by 'ggplot2' functions.
L'objectif de 'PlotFTIR' est de démarrer facilement et rapidement la production des tracés spectraux de spectroscopie infrarouge à transformée de Fourier (IRTF) de qualité journal dans R à l'aide de 'ggplot2'. Les tracés produits peuvent être publiés directement ou modifiés davantage par les fonctions 'ggplot2'.
Author: Philip Bulsink [aut, cre] ,
Ulrich Makanda [trl] ,
His Majesty the King in Right of Canada, as represented by the Minister
of Natural Resources [cph]
Maintainer: Philip Bulsink <philip.bulsink@nrcan-rncan.gc.ca>
Diff between PlotFTIR versions 1.2.1 dated 2025-08-25 and 1.3.0 dated 2026-07-21
DESCRIPTION | 10 MD5 | 137 NAMESPACE | 59 NEWS.md | 6 R/PlotFTIR-package.R | 14 R/aaa-shared_params.R |only R/data.R | 194 R/io.R | 1894 +- R/manipulations.R | 1770 +- R/maths.R | 1883 +- R/plot_ftir.R | 688 R/utils.R | 398 R/zzz.R | 58 README.md |20553 ++++++++++++++++++++++++- build/vignette.rds |binary inst/doc/plotting_ftir_spectra.R | 445 inst/doc/plotting_ftir_spectra.Rmd | 944 - inst/doc/plotting_ftir_spectra.html | 1890 +- man/PlotFTIR-package.Rd | 63 man/add_band.Rd | 140 man/add_subtract_scalar.Rd | 104 man/add_wavenumber_marker.Rd | 206 man/average_spectra.Rd | 91 man/biodiesel.Rd | 128 man/check_ftir_data.Rd | 76 man/chemospec_to_plotftir.Rd | 68 man/compress_low_energy.Rd | 106 man/compress_trans.Rd | 46 man/conversion.Rd | 139 man/dot-ggplot.Rd | 70 man/dot-shared-params.Rd |only man/figures/README-basic_plot_en-1.png |binary man/figures/README-basic_plot_fr-1.png |binary man/figures/README-biodiesel_compress_en-1.png |binary man/figures/README-biodiesel_compress_fr-1.png |binary man/figures/README-biodiesel_labelled_en-1.png |binary man/figures/README-biodiesel_labelled_fr-1.png |binary man/figures/README-biodiesel_rename_en-1.png |binary man/figures/README-biodiesel_rename_fr-1.png |binary man/figures/README-biodiesel_zoom_en-1.png |binary man/figures/README-biodiesel_zoom_fr-1.png |binary man/figures/README-stack_plot_en-1.png |binary man/figures/README-stack_plot_fr-1.png |binary man/figures/README-tidy_en-1.png |binary man/figures/README-tidy_fr-1.png |binary man/get_plot_sample_ids.Rd | 76 man/highlight_sample.Rd | 86 man/intensity_type.Rd | 47 man/ir_to_plotftir.Rd | 74 man/move_plot_legend.Rd | 158 man/normalize_spectra.Rd | 123 man/plot_ftir.Rd | 147 man/plot_ftir_core.Rd | 167 man/plot_ftir_stacked.Rd | 201 man/plotftir_to_chemospec.Rd | 110 man/plotftir_to_ir.Rd | 88 man/print.PlotFTIR_data.Rd |only man/read_ftir.Rd | 96 man/read_ftir_directory.Rd | 104 man/recalculate_baseline.Rd | 239 man/rename_plot_sample_ids.Rd | 104 man/sample_spectra.Rd | 100 man/save_plot.Rd | 72 man/zoom_in_on_range.Rd | 88 tests/testthat.R | 24 tests/testthat/test-io.R | 1263 - tests/testthat/test-manipulations.R | 1136 - tests/testthat/test-maths.R | 3244 +-- tests/testthat/test-plot_ftir.R | 342 tests/testthat/test-utils.R | 117 vignettes/plotting_ftir_spectra.Rmd | 944 - 71 files changed, 30391 insertions(+), 10939 deletions(-)
Title: Flexible Bayesian Optimization
Description: A modern and flexible approach to Bayesian Optimization / Model
Based Optimization building on the 'bbotk' package. 'mlr3mbo' is a toolbox
providing both ready-to-use optimization algorithms as well as their fundamental
building blocks allowing for straightforward implementation of custom
algorithms. Single- and multi-objective optimization is supported as well as
mixed continuous, categorical and conditional search spaces. Moreover, using
'mlr3mbo' for hyperparameter optimization of machine learning models within the
'mlr3' ecosystem is straightforward via 'mlr3tuning'. Examples of ready-to-use
optimization algorithms include Efficient Global Optimization by Jones et al.
(1998) <doi:10.1023/A:1008306431147>, ParEGO by Knowles (2006)
<doi:10.1109/TEVC.2005.851274> and SMS-EGO by Ponweiser et al. (2008)
<doi:10.1007/978-3-540-87700-4_78>.
Author: Marc Becker [cre, aut] ,
Lennart Schneider [aut] ,
Jakob Richter [aut] ,
Michel Lang [aut] ,
Bernd Bischl [aut] ,
Florian Pfisterer [aut] ,
Martin Binder [aut],
Sebastian Fischer [aut] ,
Michael H. Buselli [cph],
Wessel Dankers [cph],
Carlos Fonseca [...truncated...]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3mbo versions 1.1.1 dated 2026-04-24 and 1.2.0 dated 2026-07-21
mlr3mbo-1.1.1/mlr3mbo/R/AcqOptimzerRandomSearch.R |only mlr3mbo-1.2.0/mlr3mbo/DESCRIPTION | 20 mlr3mbo-1.2.0/mlr3mbo/MD5 | 271 ++++----- mlr3mbo-1.2.0/mlr3mbo/NEWS.md | 56 ++ mlr3mbo-1.2.0/mlr3mbo/R/AcqFunction.R | 2 mlr3mbo-1.2.0/mlr3mbo/R/AcqFunctionAEI.R | 10 mlr3mbo-1.2.0/mlr3mbo/R/AcqFunctionEHVI.R | 3 mlr3mbo-1.2.0/mlr3mbo/R/AcqFunctionEHVIGH.R | 16 mlr3mbo-1.2.0/mlr3mbo/R/AcqFunctionEI.R | 3 mlr3mbo-1.2.0/mlr3mbo/R/AcqFunctionEILog.R | 3 mlr3mbo-1.2.0/mlr3mbo/R/AcqFunctionEIPS.R | 3 mlr3mbo-1.2.0/mlr3mbo/R/AcqFunctionMulti.R | 17 mlr3mbo-1.2.0/mlr3mbo/R/AcqFunctionPI.R | 3 mlr3mbo-1.2.0/mlr3mbo/R/AcqFunctionSmsEgo.R | 13 mlr3mbo-1.2.0/mlr3mbo/R/AcqFunctionStochasticCB.R | 4 mlr3mbo-1.2.0/mlr3mbo/R/AcqFunctionStochasticEI.R | 3 mlr3mbo-1.2.0/mlr3mbo/R/AcqOptimizer.R | 28 - mlr3mbo-1.2.0/mlr3mbo/R/AcqOptimizerDirect.R | 164 ++--- mlr3mbo-1.2.0/mlr3mbo/R/AcqOptimizerLbfgsb.R | 94 ++- mlr3mbo-1.2.0/mlr3mbo/R/AcqOptimizerLocalSearch.R | 46 + mlr3mbo-1.2.0/mlr3mbo/R/AcqOptimizerRandomSearch.R |only mlr3mbo-1.2.0/mlr3mbo/R/InputTrafoUnitcube.R | 23 mlr3mbo-1.2.0/mlr3mbo/R/OptimizerADBO.R | 1 mlr3mbo-1.2.0/mlr3mbo/R/OptimizerAsyncMbo.R | 72 +- mlr3mbo-1.2.0/mlr3mbo/R/OptimizerMbo.R | 34 - mlr3mbo-1.2.0/mlr3mbo/R/OutputTrafo.R | 14 mlr3mbo-1.2.0/mlr3mbo/R/OutputTrafoLog.R | 30 - mlr3mbo-1.2.0/mlr3mbo/R/OutputTrafoStandardize.R | 14 mlr3mbo-1.2.0/mlr3mbo/R/ResultAssignerSurrogate.R | 10 mlr3mbo-1.2.0/mlr3mbo/R/Surrogate.R | 37 + mlr3mbo-1.2.0/mlr3mbo/R/SurrogateLearner.R | 77 +- mlr3mbo-1.2.0/mlr3mbo/R/SurrogateLearnerCollection.R | 74 +- mlr3mbo-1.2.0/mlr3mbo/R/TunerADBO.R | 6 mlr3mbo-1.2.0/mlr3mbo/R/TunerAsyncMbo.R | 17 mlr3mbo-1.2.0/mlr3mbo/R/TunerMbo.R | 7 mlr3mbo-1.2.0/mlr3mbo/R/bayesopt_ego.R | 7 mlr3mbo-1.2.0/mlr3mbo/R/bayesopt_emo.R | 3 mlr3mbo-1.2.0/mlr3mbo/R/bayesopt_mpcl.R | 24 mlr3mbo-1.2.0/mlr3mbo/R/bayesopt_parego.R | 21 mlr3mbo-1.2.0/mlr3mbo/R/bayesopt_smsego.R | 3 mlr3mbo-1.2.0/mlr3mbo/R/helper.R | 30 - mlr3mbo-1.2.0/mlr3mbo/R/mbo_defaults.R | 27 mlr3mbo-1.2.0/mlr3mbo/R/mlr_loop_functions.R | 19 mlr3mbo-1.2.0/mlr3mbo/R/sugar.R | 59 +- mlr3mbo-1.2.0/mlr3mbo/README.md | 48 + mlr3mbo-1.2.0/mlr3mbo/build/partial.rdb |binary mlr3mbo-1.2.0/mlr3mbo/inst |only mlr3mbo-1.2.0/mlr3mbo/man/AcqFunction.Rd | 270 ++++----- mlr3mbo-1.2.0/mlr3mbo/man/AcqOptimizer.Rd | 186 +++--- mlr3mbo-1.2.0/mlr3mbo/man/AcqOptimizerDirect.Rd | 171 +++--- mlr3mbo-1.2.0/mlr3mbo/man/AcqOptimizerLbfgsb.Rd | 163 +++-- mlr3mbo-1.2.0/mlr3mbo/man/AcqOptimizerLocalSearch.Rd | 144 ++--- mlr3mbo-1.2.0/mlr3mbo/man/AcqOptimizerRandomSearch.Rd | 122 ++-- mlr3mbo-1.2.0/mlr3mbo/man/InputTrafo.Rd | 201 +++---- mlr3mbo-1.2.0/mlr3mbo/man/InputTrafoUnitcube.Rd | 140 ++--- mlr3mbo-1.2.0/mlr3mbo/man/OutputTrafo.Rd | 280 +++++----- mlr3mbo-1.2.0/mlr3mbo/man/OutputTrafoLog.Rd | 228 ++++---- mlr3mbo-1.2.0/mlr3mbo/man/OutputTrafoStandardize.Rd | 228 ++++---- mlr3mbo-1.2.0/mlr3mbo/man/ResultAssigner.Rd | 155 ++--- mlr3mbo-1.2.0/mlr3mbo/man/Surrogate.Rd | 247 ++++---- mlr3mbo-1.2.0/mlr3mbo/man/SurrogateLearner.Rd | 172 ++---- mlr3mbo-1.2.0/mlr3mbo/man/SurrogateLearnerCollection.Rd | 175 +++--- mlr3mbo-1.2.0/mlr3mbo/man/default_acqfunction.Rd | 14 mlr3mbo-1.2.0/mlr3mbo/man/default_acqoptimizer.Rd | 14 mlr3mbo-1.2.0/mlr3mbo/man/default_gp.Rd | 18 mlr3mbo-1.2.0/mlr3mbo/man/default_loop_function.Rd | 14 mlr3mbo-1.2.0/mlr3mbo/man/default_result_assigner.Rd | 14 mlr3mbo-1.2.0/mlr3mbo/man/default_rf.Rd | 22 mlr3mbo-1.2.0/mlr3mbo/man/default_surrogate.Rd | 17 mlr3mbo-1.2.0/mlr3mbo/man/loop_function.Rd | 2 mlr3mbo-1.2.0/mlr3mbo/man/mbo_defaults.Rd | 36 - mlr3mbo-1.2.0/mlr3mbo/man/mlr3mbo-package.Rd | 1 mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions.Rd | 6 mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions_aei.Rd | 119 ++-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions_cb.Rd | 95 +-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions_ehvi.Rd | 118 ++-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions_ehvigh.Rd | 126 ++-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions_ei.Rd | 117 ++-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions_ei_log.Rd | 117 ++-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions_eips.Rd | 126 ++-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions_mean.Rd | 92 +-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions_multi.Rd | 121 ++-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions_pi.Rd | 114 ++-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions_sd.Rd | 92 +-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions_smsego.Rd | 140 ++--- mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions_stochastic_cb.Rd | 138 ++-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqfunctions_stochastic_ei.Rd | 137 ++-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_acqoptimizers.Rd | 4 mlr3mbo-1.2.0/mlr3mbo/man/mlr_input_trafos.Rd | 6 mlr3mbo-1.2.0/mlr3mbo/man/mlr_loop_functions.Rd | 18 mlr3mbo-1.2.0/mlr3mbo/man/mlr_loop_functions_ego.Rd | 4 mlr3mbo-1.2.0/mlr3mbo/man/mlr_loop_functions_emo.Rd | 2 mlr3mbo-1.2.0/mlr3mbo/man/mlr_loop_functions_mpcl.Rd | 2 mlr3mbo-1.2.0/mlr3mbo/man/mlr_loop_functions_parego.Rd | 2 mlr3mbo-1.2.0/mlr3mbo/man/mlr_loop_functions_smsego.Rd | 4 mlr3mbo-1.2.0/mlr3mbo/man/mlr_optimizers_adbo.Rd | 100 +-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_optimizers_async_mbo.Rd | 199 +++---- mlr3mbo-1.2.0/mlr3mbo/man/mlr_optimizers_mbo.Rd | 197 +++---- mlr3mbo-1.2.0/mlr3mbo/man/mlr_output_trafos.Rd | 6 mlr3mbo-1.2.0/mlr3mbo/man/mlr_result_assigners.Rd | 6 mlr3mbo-1.2.0/mlr3mbo/man/mlr_result_assigners_archive.Rd | 104 +-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_result_assigners_surrogate.Rd | 122 ++-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_tuners_adbo.Rd | 124 ++-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_tuners_async_mbo.Rd | 157 +++-- mlr3mbo-1.2.0/mlr3mbo/man/mlr_tuners_mbo.Rd | 164 +++-- mlr3mbo-1.2.0/mlr3mbo/src/infill.c | 6 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/helper.R | 2 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_AcqFunctionAEI.R | 16 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_AcqFunctionEHVI.R | 28 + mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_AcqFunctionEHVIGH.R | 55 + mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_AcqFunctionEI.R | 16 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_AcqFunctionEIPS.R | 12 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_AcqFunctionMulti.R | 33 + mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_AcqFunctionSmsEgo.R | 38 + mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_AcqFunctionStochasticCB.R | 13 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_AcqOptimizer.R | 80 ++ mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_AcqOptimizerDirect.R | 52 + mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_AcqOptimizerLbfgsb.R | 107 +++ mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_AcqOptimizerLocalSearch.R | 12 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_AcqOptimizerRandomSearch.R | 6 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_InputTrafoUnitcube.R | 16 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_OptimizerAsyncMbo.R | 26 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_OptimizerMbo.R | 39 + mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_OutputTrafo.R | 26 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_OutputTrafoLog.R | 54 + mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_OutputTrafoStandardize.R | 31 + mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_ResultAssignerSurrogate.R | 15 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_SurrogateLearner.R | 65 ++ mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_SurrogateLearnerCollection.R | 33 + mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_TunerAsyncMbo.R | 5 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_bayesopt_ego.R | 16 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_bayesopt_emo.R | 2 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_bayesopt_mpcl.R | 19 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_bayesopt_parego.R | 67 ++ mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_conditions.R | 4 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_mbo_defaults.R | 6 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_mlr_loop_functions.R | 4 mlr3mbo-1.2.0/mlr3mbo/tests/testthat/test_sugar.R | 24 138 files changed, 4869 insertions(+), 3388 deletions(-)
Title: Header-Only 'C++' and 'R' Interface
Description: Provides a header only, 'C++' interface to 'R' with enhancements
over 'cpp11'. Enforces copy-on-write semantics consistent with 'R'
behavior. Offers native support for ALTREP objects, 'UTF-8' string
handling, modern 'C++' features and idioms, and reduced memory
requirements. Allows for vendoring, making it useful for restricted
environments. Compared to 'cpp11', it adds support for converting 'C++'
maps to 'R' lists, 'Roxygen' documentation directly in 'C++' code, proper
handling of matrix attributes, support for nullable external pointers,
bidirectional copy of complex number types, flexibility in type
conversions, use of nullable pointers, and various performance
optimizations.
Author: Mauricio Vargas Sepulveda [aut, cre] ,
Posit Software, PBC [aut]
Maintainer: Mauricio Vargas Sepulveda <m.vargas.sepulveda@gmail.com>
Diff between cpp4r versions 1.0.0 dated 2026-06-12 and 1.1.0 dated 2026-07-21
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 21 ++++++++++++++++++--- inst/include/cpp4r/function.hpp | 8 ++++---- inst/include/cpp4r/r_vector_fwd.hpp | 2 +- 5 files changed, 30 insertions(+), 15 deletions(-)
Title: Kernel Ridge Regression using 'RcppArmadillo'
Description: Provides core computational operations in C++ via 'RcppArmadillo', enabling faster performance than pure R, improved numerical stability, and parallel execution with OpenMP where available. On systems without OpenMP support, the package automatically falls back to single-threaded execution with no user configuration required. For efficient model selection, it integrates with 'CVST' to provide sequential-testing cross-validation and additionally supports restricted maximum likelihood (REML) for continuous optimization of the regularization parameter. The package offers a unified interface for exact kernel ridge regression and three scalable approximations—Nyström, Pivoted Cholesky, and Random Fourier Features—allowing analyses with substantially larger sample sizes than are feasible with exact KRR. It also integrates with the 'tidymodels' ecosystem via the 'parsnip' model specification 'krr_reg', and the S3 method tunable.krr_reg(). To understand the theoretical background, one can refe [...truncated...]
Author: Gyeongmin Kim [aut] ,
Seyoung Lee [aut] ,
Miyoung Jang [aut] ,
Kwan-Young Bak [aut, cre, cph]
Maintainer: Kwan-Young Bak <kybak@sungshin.ac.kr>
Diff between FastKRR versions 0.1.2 dated 2025-11-15 and 0.2.1 dated 2026-07-21
FastKRR-0.1.2/FastKRR/man/error.Rd |only FastKRR-0.1.2/FastKRR/man/print.kernel_matrix.Rd |only FastKRR-0.2.1/FastKRR/DESCRIPTION | 13 FastKRR-0.2.1/FastKRR/MD5 | 91 FastKRR-0.2.1/FastKRR/NAMESPACE | 91 FastKRR-0.2.1/FastKRR/R/CVST_linkfunction.R | 1173 +++++----- FastKRR-0.2.1/FastKRR/R/FastKRR-package.R | 46 FastKRR-0.2.1/FastKRR/R/RcppExports.R | 94 FastKRR-0.2.1/FastKRR/R/approx_kernel.R | 486 ++-- FastKRR-0.2.1/FastKRR/R/coef.R | 92 FastKRR-0.2.1/FastKRR/R/error.R | 160 - FastKRR-0.2.1/FastKRR/R/link2tidymodels.R | 746 +++--- FastKRR-0.2.1/FastKRR/R/make_kernel.R | 118 - FastKRR-0.2.1/FastKRR/R/param.R | 191 - FastKRR-0.2.1/FastKRR/R/plot.R | 157 - FastKRR-0.2.1/FastKRR/R/print.R | 284 -- FastKRR-0.2.1/FastKRR/R/rff_random.R | 120 - FastKRR-0.2.1/FastKRR/R/summary.R | 117 FastKRR-0.2.1/FastKRR/README.md | 482 ++-- FastKRR-0.2.1/FastKRR/man/FastKRR-package.Rd | 72 FastKRR-0.2.1/FastKRR/man/approx_kernel.Rd | 302 +- FastKRR-0.2.1/FastKRR/man/coef.krr.Rd | 92 FastKRR-0.2.1/FastKRR/man/error.krr.Rd | 120 - FastKRR-0.2.1/FastKRR/man/fastkrr.Rd | 423 +-- FastKRR-0.2.1/FastKRR/man/fastkrr_fit_wrapper.Rd |only FastKRR-0.2.1/FastKRR/man/figures/README-unnamed-chunk-4-1.png |binary FastKRR-0.2.1/FastKRR/man/krr_reg.Rd | 286 +- FastKRR-0.2.1/FastKRR/man/make_kernel.Rd | 130 - FastKRR-0.2.1/FastKRR/man/param.Rd | 47 FastKRR-0.2.1/FastKRR/man/param.krr.Rd | 118 - FastKRR-0.2.1/FastKRR/man/plot.krr.Rd | 96 FastKRR-0.2.1/FastKRR/man/predict.krr.Rd | 100 FastKRR-0.2.1/FastKRR/man/print.approx_kernel.Rd | 86 FastKRR-0.2.1/FastKRR/man/print.krr.Rd | 87 FastKRR-0.2.1/FastKRR/man/summary.krr.Rd | 90 FastKRR-0.2.1/FastKRR/man/tunable.krr_reg.Rd | 42 FastKRR-0.2.1/FastKRR/src/RcppExports.cpp | 118 - FastKRR-0.2.1/FastKRR/src/kernel.cpp | 44 FastKRR-0.2.1/FastKRR/src/nystorm.cpp | 102 FastKRR-0.2.1/FastKRR/src/pchol.cpp | 287 -- FastKRR-0.2.1/FastKRR/src/reml.cpp |only FastKRR-0.2.1/FastKRR/src/rff.cpp | 75 FastKRR-0.2.1/FastKRR/src/solve_chol.cpp | 12 FastKRR-0.2.1/FastKRR/tests |only 44 files changed, 3680 insertions(+), 3510 deletions(-)
Title: Univariate Time Series Forecasting
Description: An engine for univariate time series forecasting using
different regression models in an autoregressive way. The engine
provides an uniform interface for applying the different models.
Furthermore, it is extensible so that users can easily apply their
own regression models to univariate time series forecasting and
benefit from all the features of the engine, such as preprocessings
or estimation of forecast accuracy.
Author: Maria Pilar Frias-Bustamante [aut] ,
Francisco Martinez [aut, cre, cph]
Maintainer: Francisco Martinez <fmartin@ujaen.es>
Diff between utsf versions 1.3.3 dated 2026-04-22 and 1.3.4 dated 2026-07-21
DESCRIPTION | 8 MD5 | 26 - NEWS.md | 5 R/estimate_accuracy.R | 3 README.md | 26 - build/vignette.rds |binary inst/doc/utsf.R | 31 + inst/doc/utsf.Rmd | 245 ++++++----- inst/doc/utsf.html | 862 ++++++++++++++++++++------------------- man/create_model.Rd | 4 man/figures/README-example-1.png |binary man/reexports.Rd | 2 man/utsf-package.Rd | 1 vignettes/utsf.Rmd | 245 ++++++----- 14 files changed, 836 insertions(+), 622 deletions(-)
Title: Quasi-Periodic Time Series Characteristics
Description: Calculate Characteristics of Quasi-Periodic Time Series, e.g. Estuarine Water Levels.
Author: Tom Cox [aut, cre],
Lennert Schepers [aut]
Maintainer: Tom Cox <tom.cox@uantwerp.be>
Diff between Tides versions 2.1 dated 2018-08-03 and 2.1.1 dated 2026-07-21
ChangeLog | 3 +++ DESCRIPTION | 18 +++++++++++++----- MD5 | 22 +++++++++++----------- R/Summary.R | 4 ++-- R/Tides.R | 18 +++++++++++------- build/vignette.rds |binary data/example.RData |binary inst/doc/Tides.pdf |binary man/IT.Rd | 2 -- man/TidalCharacteristics.Rd | 16 +++++++++++----- man/Tides.Rd | 2 +- man/summary.Tides.Rd | 2 -- 12 files changed, 52 insertions(+), 35 deletions(-)
Title: Methods for Computing Spatial, Temporal, and Spatiotemporal
Statistics
Description: Methods for computing spatial, temporal, and spatiotemporal
statistics as described in Gouhier and Guichard (2014)
<doi:10.1111/2041-210X.12188>. These methods include
empirical univariate, bivariate and multivariate
variograms; fitting variogram models; phase locking and synchrony analysis;
generating autocorrelated and cross-correlated matrices.
Author: Tarik C. Gouhier [aut, cre]
Maintainer: Tarik C. Gouhier <tarik.gouhier@gmail.com>
Diff between synchrony versions 0.3.8 dated 2019-12-05 and 0.3.9 dated 2026-07-21
DESCRIPTION | 18 +++++++++++------- MD5 | 8 ++++---- R/plot.synchrony.R | 2 +- inst/NEWS.Rd | 8 ++++++++ man/coord2dist.Rd | 2 +- 5 files changed, 25 insertions(+), 13 deletions(-)
Title: Projection Pursuit Oblique Decision Trees and Random Forests
Description: Builds decision trees by splitting on linear combinations of
randomly chosen variables. Projection pursuit is used to choose a
projection of the variables that best separates the groups. Using linear
combinations of variables to separate groups takes the correlation between
variables into account, which allows the model to outperform a traditional
decision tree when the separation between groups occurs in combinations of
variables. Single trees can be assembled into random forests for improved
accuracy. Implements projection pursuit classification trees (Lee, Cook,
Park and Lee (2013) <doi:10.1214/13-EJS810>) and projection
pursuit forests (da Silva, Cook and Lee (2021)
<doi:10.1080/10618600.2020.1870480>), following the earlier 'PPforest'
package.
Author: Andres Vidal [aut, cre, cph],
Natalia da Silva [aut]
Maintainer: Andres Vidal <andres@andresvidal.dev>
Diff between ppforest2 versions 0.1.1 dated 2026-07-19 and 0.1.2 dated 2026-07-21
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 6 ++++++ inst/include/nlohmann/json.hpp | 9 +++++++++ 4 files changed, 22 insertions(+), 7 deletions(-)
Title: Odds Ratio Tools for Logistic Regression
Description: Produces odds ratio analyses with comprehensive reporting tools. Generates
plots, summary tables, and diagnostic checks for logistic regression models
fitted with 'glm()' using binomial family. Provides visualisation methods,
formatted reporting tables via 'gt', and tools to assess logistic regression
model assumptions.
Author: Craig Parylo [aut, cre, cph]
Maintainer: Craig Parylo <craig.parylo2@nhs.net>
Diff between plotor versions 1.0.0 dated 2026-02-14 and 1.1.0 dated 2026-07-21
plotor-1.0.0/plotor/inst/doc/using_plotor.R |only plotor-1.0.0/plotor/inst/doc/using_plotor.Rmd |only plotor-1.0.0/plotor/inst/doc/using_plotor.html |only plotor-1.0.0/plotor/vignettes/using_plotor.Rmd |only plotor-1.1.0/plotor/DESCRIPTION | 15 plotor-1.1.0/plotor/LICENSE | 4 plotor-1.1.0/plotor/MD5 | 69 plotor-1.1.0/plotor/NAMESPACE | 14 plotor-1.1.0/plotor/NEWS.md | 556 plotor-1.1.0/plotor/R/plot_or.R | 7556 +++++----- plotor-1.1.0/plotor/R/plotor-package.R | 16 plotor-1.1.0/plotor/README.md | 298 plotor-1.1.0/plotor/build/vignette.rds |binary plotor-1.1.0/plotor/inst/doc/check_or.R |only plotor-1.1.0/plotor/inst/doc/check_or.html |only plotor-1.1.0/plotor/inst/doc/check_or.qmd |only plotor-1.1.0/plotor/inst/doc/plot_or.R |only plotor-1.1.0/plotor/inst/doc/plot_or.html |only plotor-1.1.0/plotor/inst/doc/plot_or.qmd |only plotor-1.1.0/plotor/inst/doc/table_or.R |only plotor-1.1.0/plotor/inst/doc/table_or.html |only plotor-1.1.0/plotor/inst/doc/table_or.qmd |only plotor-1.1.0/plotor/inst/doc/using_plotor_quickstart.R |only plotor-1.1.0/plotor/inst/doc/using_plotor_quickstart.html |only plotor-1.1.0/plotor/inst/doc/using_plotor_quickstart.qmd |only plotor-1.1.0/plotor/man/check_or.Rd | 84 plotor-1.1.0/plotor/man/figures/readme_check_or.html | 96 plotor-1.1.0/plotor/man/figures/readme_table_or.html | 1238 - plotor-1.1.0/plotor/man/plot_or.Rd | 130 plotor-1.1.0/plotor/man/plotor-package.Rd | 52 plotor-1.1.0/plotor/man/table_or.Rd | 182 plotor-1.1.0/plotor/tests/testthat.R | 24 plotor-1.1.0/plotor/tests/testthat/helper_generate_data.R | 1526 +- plotor-1.1.0/plotor/tests/testthat/test-assumptions.R |only plotor-1.1.0/plotor/tests/testthat/test-confidence-intervals.R |only plotor-1.1.0/plotor/tests/testthat/test-plot_or.R | 510 plotor-1.1.0/plotor/tests/testthat/test-runtime-estimation.R |only plotor-1.1.0/plotor/tests/testthat/test-table_or.R |only plotor-1.1.0/plotor/tests/testthat/test-validation.R |only plotor-1.1.0/plotor/tests/testthat/test_data/make_test_data.R | 1614 +- plotor-1.1.0/plotor/tools/generate_readme_figures.R | 202 plotor-1.1.0/plotor/vignettes/check_or.qmd |only plotor-1.1.0/plotor/vignettes/images |only plotor-1.1.0/plotor/vignettes/plot_or.qmd |only plotor-1.1.0/plotor/vignettes/table_or.qmd |only plotor-1.1.0/plotor/vignettes/using_plotor_quickstart.qmd |only 46 files changed, 6938 insertions(+), 7248 deletions(-)
Title: Cell Type Annotation Using Large Language Models
Description: Automated cell type annotation for single-cell RNA sequencing data
using consensus predictions from multiple large language models. Integrates
with Seurat objects and provides uncertainty quantification for annotations.
Supports various LLM providers including OpenAI, Anthropic, and Google.
For details see Yang et al. (2026) <doi:10.1038/s42003-026-10420-8>.
Author: Chen Yang [aut, cre, cph]
Maintainer: Chen Yang <cafferychen777@tamu.edu>
This is a re-admission after prior archival of version 2.0.5 dated 2026-05-11
Diff between mLLMCelltype versions 2.0.5 dated 2026-05-11 and 2.0.7 dated 2026-07-21
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Title: Optimal Multilevel Matching using a Network Algorithm
Description: Performs multilevel matches for data with cluster-
level treatments and individual-level outcomes using a network
optimization algorithm. Functions for checking balance at the
cluster and individual levels are also provided, as are methods
for permutation-inference-based outcome analysis. Details in
Pimentel et al. (2018) <doi:10.1214/17-AOAS1118>. The optmatch
package, which is useful for running many of the provided
functions, may be downloaded from Github at
<https://github.com/markmfredrickson/optmatch> if not available on
CRAN.
Author: Luke Keele [aut],
Luke Miratrix [aut],
Sam Pimentel [aut, cre],
Paul Rosenbaum [ctb]
Maintainer: Sam Pimentel <spi@berkeley.edu>
Diff between matchMulti versions 1.1.14 dated 2025-04-18 and 1.1.15 dated 2026-07-21
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ build/vignette.rds |binary inst/doc/multiMatch_vignette.Rnw | 4 ++-- inst/doc/multiMatch_vignette.pdf |binary vignettes/keele_revised2.bib | 22 ++++++++++++++++++++++ vignettes/multiMatch_vignette.Rnw | 4 ++-- 7 files changed, 36 insertions(+), 14 deletions(-)
Title: Leave One Out Kernel Density Estimates for Outlier Detection
Description: Outlier detection using leave-one-out kernel density estimates and
extreme value theory. The bandwidth for kernel density estimates is computed
using persistent homology, a technique in topological data analysis. Using
peak-over-threshold method, a generalized Pareto distribution is fitted to
the log of leave-one-out kde values to identify outliers.
Author: Sevvandi Kandanaarachchi [aut, cre] ,
Rob Hyndman [aut] ,
Chris Fraley [ctb]
Maintainer: Sevvandi Kandanaarachchi <sevvandik@gmail.com>
Diff between lookout versions 2.0.1 dated 2026-03-26 and 2.0.2 dated 2026-07-21
DESCRIPTION | 8 ++++---- MD5 | 17 +++++++++-------- NAMESPACE | 3 +++ R/bandwidth.R | 13 ++++++------- R/bickel_doksum.R |only R/lookoutliers.R | 3 ++- R/outlier_persistence.R | 15 ++++++--------- man/lookout-package.Rd | 1 + man/mvscale.Rd | 2 +- man/reexports.Rd | 2 +- 10 files changed, 33 insertions(+), 31 deletions(-)
Title: Deep Learning Models for Image Segmentation
Description: A general-purpose workflow for image segmentation using TensorFlow models based on the U-Net architecture by Ronneberger et al. (2015) <doi:10.48550/arXiv.1505.04597> and the U-Net++ architecture by Zhou et al. (2018) <doi:10.48550/arXiv.1807.10165>. We provide pre-trained models for assessing canopy density and understory vegetation density from vegetation photos. In addition, the package provides a workflow for easily creating model input and model architectures for general-purpose image segmentation based on grayscale or color images, both for binary and multi-class image segmentation.
Author: Juergen Niedballa [aut, cre] ,
Jan Axtner [aut] ,
Leibniz Institute for Zoo and Wildlife Research [cph]
Maintainer: Juergen Niedballa <camtrapr@gmail.com>
Diff between imageseg versions 0.5.0 dated 2022-05-29 and 0.5.2 dated 2026-07-21
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Title: Gaussian Process Modelling in 'greta'
Description: Provides a syntax to create and combine Gaussian process kernels
in 'greta'. You can then use these kernels to define either full rank or
sparse Gaussian processes, and project a fitted process to new coordinates.
This lets you include Gaussian process components in the statistical models
you write with 'greta'. This is an extension to the 'greta' software, Golding
(2019) <doi:10.21105/joss.01601>.
Author: Nick Golding [aut, cph] ,
Jian Yen [ctb],
Nicholas Tierney [aut, cre]
Maintainer: Nicholas Tierney <nicholas.tierney@gmail.com>
This is a re-admission after prior archival of version 0.2.2 dated 2024-11-13
Diff between greta.gp versions 0.2.2 dated 2024-11-13 and 0.2.3 dated 2026-07-21
DESCRIPTION | 27 ++++++++++++++++----------- MD5 | 18 +++++++++--------- NEWS.md | 12 ++++++++++++ R/gp.R | 6 +++--- README.md | 8 ++++---- build/vignette.rds |binary inst/doc/getting-started.html | 13 +++++++------ man/figures/README-plotting-1.png |binary man/gp.Rd | 6 +++--- man/greta.gp.Rd | 1 + 10 files changed, 55 insertions(+), 36 deletions(-)
Title: Minimization of the Convex Clustering Loss Function
Description: Implements the convex clustering through majorization-minimization (CCMM) algorithm described in Touw, Groenen, and Terada (2022) <doi:10.48550/arXiv.2211.01877> to perform minimization of the convex clustering loss function.
Author: Daniel Touw [aut, cre] ,
Patrick Groenen [aut] ,
Yoshikazu Terada [aut]
Maintainer: Daniel Touw <touw@ese.eur.nl>
Diff between CCMMR versions 0.2.2 dated 2026-06-28 and 0.2.3 dated 2026-07-21
DESCRIPTION | 8 ++-- MD5 | 8 ++-- NEWS | 60 ++++++++++++++++++------------- src/ccmm.cpp | 105 ++++++++++++++++++++++++++++++++++++++++++++++--------- tests/testthat.R | 8 ++-- 5 files changed, 135 insertions(+), 54 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-05 1.1
2018-09-14 0.5
2018-05-22 0.4
2016-05-12 0.3
2016-01-11 0.2
2015-07-11 0.1
Title: Shared Memory for R Objects
Description: Share R objects across processes on the same machine via a
single copy in 'POSIX' shared memory (Linux, macOS) or a 'Win32' file
mapping (Windows). Every process reads from the same physical pages
through the R Alternative Representation ('ALTREP') framework, giving
lazy, zero-copy access. Shared objects serialize compactly as their
shared memory name rather than their full contents.
Author: Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between mori versions 0.2.1 dated 2026-06-09 and 0.2.2 dated 2026-07-21
DESCRIPTION | 8 ++-- MD5 | 13 ++++--- NEWS.md | 4 ++ README.md | 58 +++++++++++++++++------------------ man/figures/logo.svg |only man/figures/mori-diagram.svg | 70 ------------------------------------------- src/shm.c | 36 ++++++++++++++++++++-- tests/testthat/test-create.R | 13 ++++++- 8 files changed, 90 insertions(+), 112 deletions(-)
Title: Visualizing Class Specific Heterogeneous Tendencies in
Categorical Data
Description: Provides functions for performing multiple-class cluster correspondence analysis(MCCCA). The main functions are create.MCCCAdata() to create a list to be applied to MCCCA, MCCCA() to apply MCCCA, and plot.mccca() for visualizing MCCCA result. Methods used in the package are described in Mariko Takagishi and Michel van de Velden (2022)<doi:10.1080/10618600.2022.2035737>.
Author: Mariko Takagishi [aut, cre]
Maintainer: Mariko Takagishi <m.takagishi0728@gmail.com>
Diff between mccca versions 2.2 dated 2026-07-15 and 2.4 dated 2026-07-21
DESCRIPTION | 12 - MD5 | 10 - NAMESPACE | 1 R/plot.MCCCA.func.R | 17 -- R/plot.calcindex.R | 357 +++++++++++++++++++++++++++++++++++--------------- man/plot.calcIndex.Rd | 36 +++-- 6 files changed, 294 insertions(+), 139 deletions(-)
Title: Interface to the 'Hawkin Dynamics' Force Platform API
Description: Provides a secure and configurable interface to the 'Hawkin Dynamics' API for accessing athlete performance data, tests, and metadata.
The package supports profile-based authentication with secure credential storage via the operating system keychain, automatic access token refresh, and region-aware API routing.
Designed for reproducible analysis, data synchronization workflows, and production deployment.
Author: Lauren Green [aut, cre]
Maintainer: Lauren Green <lauren@hawkindynamics.com>
Diff between hawkinR versions 2.0.0 dated 2026-07-19 and 2.0.1 dated 2026-07-21
DESCRIPTION | 6 +-- MD5 | 9 ++--- NEWS.md | 7 +++ R/get_forcetime.R | 64 +++++++++++++++++------------------- README.md | 4 +- tests/testthat/test-get_forcetime.R |only 6 files changed, 48 insertions(+), 42 deletions(-)
Title: Amazon Web Services Request Signatures
Description: Generates version 2 and version 4 request signatures for Amazon Web Services ('AWS') <https://aws.amazon.com/> Application Programming Interfaces ('APIs') and provides a mechanism for retrieving credentials from environment variables, 'AWS' credentials files, and 'EC2' instance metadata. For use on 'EC2' instances, users will need to install the suggested package 'aws.ec2metadata' <https://cran.r-project.org/package=aws.ec2metadata>.
Author: Thomas J. Leeper [aut] ,
Jonathan Stott [aut],
Gonzalo Diaz [cre, aut] ,
Mike Kaminsky [ctb],
Mark Douthwaite [ctb],
Jason Gofford [ctb],
Luke Dyer [ctb]
Maintainer: Gonzalo Diaz <gonzalomartindiaz22@gmail.com>
Diff between aws.signature versions 0.6.0 dated 2020-06-01 and 0.6.2 dated 2026-07-21
DESCRIPTION | 37 - MD5 | 70 +- NAMESPACE | 29 NEWS.md | 302 +++++----- R/URLencode.R | 24 R/assume_role.R |only R/aws.signature-package.R | 50 + R/canonical_request.R | 207 +++--- R/locate_credentials.R | 899 +++++++++++++++--------------- R/onLoad.R | 24 R/read_credentials.R | 246 ++++---- R/signature_v4.R | 132 ++-- R/string_to_sign.R | 89 +- R/utils.R | 16 R/v2.R | 320 +++++----- R/v4.R | 379 ++++++------ README.md | 134 ++-- inst/CITATION | 39 - man/assume_role_with_web_identity.Rd |only man/aws.signature-package.Rd | 92 ++- man/canonical_request.Rd | 144 ++-- man/locate_credentials.Rd | 136 ++-- man/read_credentials.Rd | 100 +-- man/signature_v2_auth.Rd | 220 +++---- man/signature_v4.Rd | 158 ++--- man/signature_v4_auth.Rd | 232 +++---- man/string_to_sign.Rd | 108 +-- tests/testthat.R | 4 tests/testthat/credentials | 24 tests/testthat/credentials-no-eol-char | 22 tests/testthat/test-canonical_request.R | 96 +-- tests/testthat/test-utils.R | 22 tests/testthat/test-v4.R | 52 - tests/testthat/tests-digital-ocean.R | 46 - tests/testthat/tests-locate_credentials.R | 608 ++++++++++---------- tests/testthat/tests-read_credentials.R | 176 ++--- tests/testthat/tests.R | 292 ++++----- 37 files changed, 2866 insertions(+), 2663 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-05-20 2018.5-1
2016-12-09 2016.12-1
2015-02-22 2015.2-1
Title: Data Validation and Organization of Metadata for Local and
Remote Tables
Description: Validate data in data frames, 'tibble' objects, 'Spark'
'DataFrames', and database tables. Validation pipelines can be made using
easily-readable, consecutive validation steps. Upon execution of the
validation plan, several reporting options are available. User-defined
thresholds for failure rates allow for the determination of appropriate
reporting actions. Many other workflows are available including an
information management workflow, where the aim is to record, collect, and
generate useful information on data tables.
Author: Richard Iannone [aut, cre] ,
Mauricio Vargas [aut] ,
June Choe [aut] ,
Olivier Roy [ctb]
Maintainer: Richard Iannone <rich@posit.co>
Diff between pointblank versions 0.12.3 dated 2025-11-28 and 0.12.4 dated 2026-07-21
DESCRIPTION | 12 +++---- MD5 | 32 ++++++++++---------- NEWS.md | 20 +++++++++++++ R/file_naming.R | 12 +++---- R/get_agent_report.R | 31 +++++++++++++++++++- R/get_sundered_data.R | 60 ++++++++++++++++++++++++++++----------- R/logging.R | 72 +++-------------------------------------------- R/object_ops.R | 9 +++++ R/scan_data.R | 15 +++++++-- R/steps_and_briefs.R | 10 +++--- R/utils-specifications.R | 5 +-- R/utils.R | 28 +++++++++++++++++- R/validate_rmd.R | 19 ++++-------- man/affix_date.Rd | 12 +++---- man/col_vals_expr.Rd | 2 - man/draft_validation.Rd | 4 +- man/reexports.Rd | 2 - 17 files changed, 197 insertions(+), 148 deletions(-)
Title: Representation for Glycan Compositions and Structures
Description: Computational representations of glycan compositions and structures,
including details such as linkages, anomers, and substituents. Supports varying
levels of monosaccharide specificity (e.g., "Hex" or "Gal") and ambiguous linkages.
Provides robust parsing and generation of IUPAC-condensed structure strings.
Optimized for vectorized operations on glycan structures, with efficient handling
of duplications. As the cornerstone of the glycoverse ecosystem, this package
delivers the foundational data structures that power glycomics and glycoproteomics
analysis workflows.
Author: Bin Fu [aut, cre, cph]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>
Diff between glyrepr versions 0.13.0 dated 2026-07-05 and 0.14.0 dated 2026-07-21
DESCRIPTION | 6 MD5 | 50 +-- NAMESPACE | 5 NEWS.md | 13 R/fill-anomer-pos.R | 27 - R/mono-type.R | 8 R/smap.R | 2 R/structure-graph-low-level.R |only R/structure-to-iupac.R | 7 R/structure.R | 446 ++++++++++++++------------- R/validate-helper.R | 5 build/vignette.rds |binary inst/doc/glycan-graph.html | 6 inst/doc/glyrepr.html | 8 inst/doc/smap.html | 18 - man/as_glycan_structure.Rd | 15 man/canonicalize_glycan_graph.Rd |only man/fill_anomer_pos.Rd | 3 man/glycan_structure.Rd | 1 man/graph_to_iupac.Rd |only man/new_glycan_structure.Rd |only man/validate_glycan_graph.Rd |only man/validate_glycan_graph_vector.Rd |only tests/testthat/_snaps/low-level-structure.md |only tests/testthat/_snaps/structure.md | 46 ++ tests/testthat/test-fill-anomer-pos.R | 11 tests/testthat/test-iupac-to-structure.R | 13 tests/testthat/test-low-level-structure.R |only tests/testthat/test-mono-type.R | 5 tests/testthat/test-structure.R | 105 ++++++ 30 files changed, 516 insertions(+), 284 deletions(-)
Title: Access, Retrieve, and Work with CMHC Data
Description: Wrapper around the Canadian Mortgage and Housing Corporation (CMHC) web interface. It enables programmatic and reproducible access to a wide variety of housing data from CMHC.
Author: Jens von Bergmann [aut, cre]
Maintainer: Jens von Bergmann <jens@mountainmath.ca>
Diff between cmhc versions 0.2.10 dated 2025-02-03 and 0.2.12 dated 2026-07-21
DESCRIPTION | 16 ++-- MD5 | 31 +++++---- NAMESPACE | 1 NEWS.md | 31 +++++++-- R/cmhc.R | 58 ++++++++++++++--- R/cmhc_geography.R | 62 +++++++++++++----- R/cmhc_tables.R | 138 ++++++++++++++++++++++++++++++++++++------ R/helpers.R | 2 README.md | 11 +-- build/vignette.rds |binary inst/doc/basic_usage.html | 15 ++-- inst/doc/rental_universe.html | 11 +-- man/cmhc_quality_labels.Rd | 2 man/get_cmhc.Rd | 3 man/list_cmhc_periods.Rd |only tests |only 16 files changed, 290 insertions(+), 91 deletions(-)