Title: Checks Session Status
Description: Provides tools for checking whether an R session is in a clean state,
including the global environment, attached packages, loaded namespaces,
attached environments, session run time, R options, locale settings, and
system environment variables. Intended as a safer replacement for the
common 'rm(list = ls())' idiom: rather than silently wiping the global
environment, sessioncheck() surfaces problems so the user can make an
informed decision.
Author: Danielle Navarro [aut, cre, cph] ,
Meghan Harris [ctb]
Maintainer: Danielle Navarro <djnavarro@protonmail.com>
Diff between sessioncheck versions 0.1 dated 2026-02-27 and 0.1.1 dated 2026-07-28
DESCRIPTION | 33 +++++++++++++-------- MD5 | 37 ++++++++++++------------ NEWS.md |only R/api.R | 57 ++++++++++++++++--------------------- R/class.R | 2 - R/internal.R | 29 ++++++++++++++++-- README.md | 6 ++- inst |only man/check_attached_environments.Rd | 5 +-- man/check_attached_packages.Rd | 7 +--- man/check_globalenv_objects.Rd | 3 - man/check_loaded_namespaces.Rd | 4 +- man/check_required_locale.Rd | 5 +-- man/check_required_options.Rd | 3 - man/check_required_sysenv.Rd | 5 +-- man/check_sessiontime.Rd | 3 - man/sessioncheck.Rd | 4 +- tests/testthat/test-api.R | 6 +-- tests/testthat/test-other.R | 5 +++ tests/testthat/test-spelling.R |only tests/testthat/test-validators.R | 32 ++++++++++++++++++++ 21 files changed, 152 insertions(+), 94 deletions(-)
Title: Fast and Unified Synthetic Control Methods
Description: A unified 'Formula' interface to the Synthetic Control Method
(SCM) and related panel-data causal inference estimators: Synthetic
Difference-in-Differences (SDID), Generalized Synthetic Control (GSC),
Matrix Completion (MC), Time-Aware Synthetic Control (TASC), and Synthetic
Interventions (SI), together with an experimental-design variant.
Computational bottlenecks (quadratic programming, singular value
decomposition, and Kalman filtering) are implemented in 'C++' via
'RcppArmadillo'. Methods are described in Abadie, Diamond and Hainmueller
(2010) <doi:10.1198/jasa.2009.ap08746>, Arkhangelsky, Athey, Hirshberg,
Imbens and Wager (2021) <doi:10.1257/aer.20190159>, Xu (2017)
<doi:10.1017/pan.2016.2>, Athey, Bayati, Doudchenko, Imbens and Khosravi
(2021) <doi:10.1080/01621459.2021.1891924>, and Agarwal, Shah and Shen
(2025) <doi:10.1287/opre.2025.1590>.
Author: Yosuke Abe [aut, cre]
Maintainer: Yosuke Abe <yosuke.abe0507@gmail.com>
Diff between coresynth versions 0.4.0 dated 2026-07-20 and 0.4.1 dated 2026-07-28
DESCRIPTION | 6 MD5 | 40 - NEWS.md | 1131 +++++++++++++++++++++----------------- R/RcppExports.R | 43 + R/scm.R | 80 ++ R/scm_design.R | 26 R/scm_fit.R | 33 + R/utils.R | 65 +- inst/doc/coresynth.R | 1 inst/doc/coresynth.Rmd | 1 inst/doc/coresynth.html | 18 man/scm_fit.Rd | 27 man/scm_inner_weights_cpp.Rd | 52 + man/scm_placebo_cpp.Rd | 83 +- man/scm_placebo_x_cpp.Rd | 116 ++- man/scm_weights_cpp.Rd | 19 src/RcppExports.cpp | 37 - src/inference.cpp | 26 src/scm.cpp | 719 ++++++++++++++++-------- tests/testthat/test-integration.R | 213 +++++++ vignettes/coresynth.Rmd | 1 21 files changed, 1805 insertions(+), 932 deletions(-)
Title: Bayesian Spatial Functional Clustering
Description: Bayesian clustering of spatial regions with similar functional shapes using
spanning trees and latent Gaussian models. The method enforces spatial contiguity
within clusters and supports a wide range of latent Gaussian models, including
non-Gaussian likelihoods, via the R-INLA framework. The algorithm is based on Zhong,
R., Chacón-Montalván, E. A., and Moraga, P. (2026) <doi:10.1002/sim.70597>,
extending the approach of Zhang, B., Sang, H., Luo, Z. T., and Huang, H. (2023)
<doi:10.1214/22-AOAS1643>. The package includes tools for model fitting, convergence
diagnostics, visualization, and summarization of clustering results.
Author: Erick A. Chacon-Montalvan [aut, cre] ,
Ruiman Zhong [aut] ,
Paula Moraga [aut]
Maintainer: Erick A. Chacon-Montalvan <erick.chaconmontalvan@wur.nl>
Diff between sfclust versions 1.0.1 dated 2025-05-19 and 1.1.0 dated 2026-07-28
sfclust-1.0.1/sfclust/R/model-cluster.R |only sfclust-1.0.1/sfclust/R/model-within.R |only sfclust-1.0.1/sfclust/inst/doc/additional-features.R |only sfclust-1.0.1/sfclust/inst/doc/additional-features.Rmd |only sfclust-1.0.1/sfclust/inst/doc/additional-features.html |only sfclust-1.0.1/sfclust/inst/doc/get-started.R |only sfclust-1.0.1/sfclust/inst/doc/get-started.Rmd |only sfclust-1.0.1/sfclust/inst/doc/get-started.html |only sfclust-1.0.1/sfclust/inst/doc/stars-object.R |only sfclust-1.0.1/sfclust/inst/doc/stars-object.Rmd |only sfclust-1.0.1/sfclust/inst/doc/stars-object.html |only sfclust-1.0.1/sfclust/man/data_each.Rd |only sfclust-1.0.1/sfclust/tests/testthat/test-model-within.R |only sfclust-1.0.1/sfclust/vignettes/additional-features.Rmd |only sfclust-1.0.1/sfclust/vignettes/get-started.Rmd |only sfclust-1.0.1/sfclust/vignettes/stars-object.Rmd |only sfclust-1.1.0/sfclust/DESCRIPTION | 24 sfclust-1.1.0/sfclust/MD5 | 91 + sfclust-1.1.0/sfclust/NAMESPACE | 57 - sfclust-1.1.0/sfclust/NEWS.md |only sfclust-1.1.0/sfclust/R/data-preparation.R |only sfclust-1.1.0/sfclust/R/generate-clusters.R | 199 ++- sfclust-1.1.0/sfclust/R/model-inla.R |only sfclust-1.1.0/sfclust/R/model-sfclust.R |only sfclust-1.1.0/sfclust/R/sfclust-methods.R | 498 +++++++--- sfclust-1.1.0/sfclust/R/sfclust-package.R | 33 sfclust-1.1.0/sfclust/R/spanning-tree.R | 7 sfclust-1.1.0/sfclust/README.md | 22 sfclust-1.1.0/sfclust/build/partial.rdb |binary sfclust-1.1.0/sfclust/build/vignette.rds |binary sfclust-1.1.0/sfclust/data/chapa.rda |only sfclust-1.1.0/sfclust/inst/doc/sfclust.R |only sfclust-1.1.0/sfclust/inst/doc/sfclust.Rmd |only sfclust-1.1.0/sfclust/inst/doc/sfclust.html |only sfclust-1.1.0/sfclust/inst/doc/vg01-stars-object.R |only sfclust-1.1.0/sfclust/inst/doc/vg01-stars-object.Rmd |only sfclust-1.1.0/sfclust/inst/doc/vg01-stars-object.html |only sfclust-1.1.0/sfclust/inst/doc/vg02-advanced-features.R |only sfclust-1.1.0/sfclust/inst/doc/vg02-advanced-features.Rmd |only sfclust-1.1.0/sfclust/inst/doc/vg02-advanced-features.html |only sfclust-1.1.0/sfclust/inst/doc/vg03-data-frame.R |only sfclust-1.1.0/sfclust/inst/doc/vg03-data-frame.Rmd |only sfclust-1.1.0/sfclust/inst/doc/vg03-data-frame.html |only sfclust-1.1.0/sfclust/inst/vigdata/binomial-mcmc.rds |binary sfclust-1.1.0/sfclust/inst/vigdata/gaussian-mcmc1.rds |binary sfclust-1.1.0/sfclust/inst/vigdata/gaussian-mcmc2.rds |binary sfclust-1.1.0/sfclust/man/chapa.Rd |only sfclust-1.1.0/sfclust/man/data_all.Rd | 23 sfclust-1.1.0/sfclust/man/filter_df.Rd |only sfclust-1.1.0/sfclust/man/fitted.sfclust.Rd | 18 sfclust-1.1.0/sfclust/man/genclust.Rd | 89 + sfclust-1.1.0/sfclust/man/log_mlik_all.Rd | 46 sfclust-1.1.0/sfclust/man/plot.sfclust.Rd | 35 sfclust-1.1.0/sfclust/man/plot_clusters_fitted.Rd |only sfclust-1.1.0/sfclust/man/plot_clusters_map.Rd |only sfclust-1.1.0/sfclust/man/plot_clusters_series.Rd |only sfclust-1.1.0/sfclust/man/plot_log_mlik.Rd |only sfclust-1.1.0/sfclust/man/print.sfclust.Rd | 2 sfclust-1.1.0/sfclust/man/sfclust-package.Rd | 13 sfclust-1.1.0/sfclust/man/sfclust.Rd | 211 +++- sfclust-1.1.0/sfclust/man/update.sfclust.Rd | 15 sfclust-1.1.0/sfclust/tests/testthat/test-data-preparation.R |only sfclust-1.1.0/sfclust/tests/testthat/test-generate-clusters.R | 207 +++- sfclust-1.1.0/sfclust/tests/testthat/test-model-inla.R |only sfclust-1.1.0/sfclust/tests/testthat/test-sfclust-methods.R | 305 +++++- sfclust-1.1.0/sfclust/vignettes/sfclust.Rmd |only sfclust-1.1.0/sfclust/vignettes/vg01-stars-object.Rmd |only sfclust-1.1.0/sfclust/vignettes/vg02-advanced-features.Rmd |only sfclust-1.1.0/sfclust/vignettes/vg03-data-frame.Rmd |only 69 files changed, 1432 insertions(+), 463 deletions(-)
Title: Easy Access to High-Resolution Daily Climate Data for Europe
Description: Get high-resolution (1 km) daily, monthly and annual climate data (precipitation,
and average, minimum and maximum temperatures) for points and polygons within
Europe.
Author: Veronica Cruz-Alonso [aut, cph] ,
Francisco Rodriguez-Sanchez [aut, cph] ,
Christoph Pucher [aut] ,
Paloma Ruiz-Benito [aut] ,
Julen Astigarraga [aut] ,
Mathias Neumann [aut] ,
Sofia Miguel [aut, cre] ,
Sophia Ratcliffe [aut]
Maintainer: Sofia Miguel <sofia.miromero@gmail.com>
Diff between easyclimate versions 0.2.2 dated 2024-11-22 and 1.0.0 dated 2026-07-28
DESCRIPTION | 50 - MD5 | 49 + NAMESPACE | 3 NEWS.md | 90 +- R/build_url.R | 158 +++-- R/check_latest_year.R |only R/check_server.R | 65 +- R/get_annual_climate.R |only R/get_annual_climate_single.R |only R/get_daily_climate.R | 58 - R/get_daily_climate_single.R | 644 ++++++++++---------- R/get_monthly_climate.R |only R/get_monthly_climate_single.R |only R/get_periods.R |only R/reshape_terra_extract.R |only README.md | 335 ++++------ inst/CITATION | 94 +-- man/build_url.Rd |only man/check_server.Rd | 32 - man/easyclimate-package.Rd | 8 man/get_annual_climate.Rd |only man/get_daily_climate.Rd | 50 - man/get_monthly_climate.Rd |only man/get_periods.Rd |only tests/testthat/test-build_url.R | 50 - tests/testthat/test-get_annual_climate.R |only tests/testthat/test-get_annual_climate_single.R |only tests/testthat/test-get_daily_climate.R | 187 +++--- tests/testthat/test-get_daily_climate_single.R | 713 ++++++++++++----------- tests/testthat/test-get_monthly_climate.R |only tests/testthat/test-get_monthly_climate_single.R |only tests/testthat/test-period_to_days.R | 88 +- tests/testthat/test-period_to_months.R |only tests/testthat/test-period_to_years.R |only 34 files changed, 1384 insertions(+), 1290 deletions(-)
Title: Crunch.io Data Tools
Description: The Crunch.io service <https://crunch.io/> provides a cloud-based
data store and analytic engine, as well as an intuitive web interface.
Using this package, analysts can interact with and manipulate Crunch
datasets from within R. Importantly, this allows technical researchers to
collaborate naturally with team members, managers, and clients who prefer a
point-and-click interface.
Author: Greg Freedman Ellis [aut, cre],
Jonathan Keane [aut],
Mike Malecki [aut],
Neal Richardson [aut],
Gordon Shotwell [aut],
Aljaz Sluga [aut]
Maintainer: Greg Freedman Ellis <greg@crunch.io>
This is a re-admission after prior archival of version 1.31.2 dated 2026-06-15
Diff between crunch versions 1.31.2 dated 2026-06-15 and 1.31.3 dated 2026-07-28
DESCRIPTION | 6 +- MD5 | 58 +++++++++++++------------- R/as-data-frame.R | 12 ++--- R/categories.R | 4 - R/compare-datasets.R | 8 +-- R/dichotomize.R | 2 R/export-dataset.R | 2 R/json.R | 2 R/make-array.R | 2 R/misc.R | 2 R/permissions.R | 2 R/shoji.R | 4 - R/show.R | 2 R/tuple.R | 4 - R/variable-metadata.R | 2 R/variable-update.R | 2 tests/testthat/app.crunch.io/404.R | 2 tests/testthat/app.crunch.io/503.R | 2 tests/testthat/app.crunch.io/deprecated.R | 2 tests/testthat/app.crunch.io/other-warning.R | 2 tests/testthat/test-add-variable.R | 2 tests/testthat/test-as-data-frame.R | 14 +++--- tests/testthat/test-categories.R | 12 ++--- tests/testthat/test-crunch-data-frame-merge.R | 10 +++- tests/testthat/test-datetime.R | 10 ++-- tests/testthat/test-decks.R | 4 - tests/testthat/test-derive-array.R | 12 ++--- tests/testthat/test-multitables.R | 8 +-- tests/testthat/test-progress.R | 1 tests/testthat/test-variable-folders.R | 4 + 30 files changed, 104 insertions(+), 95 deletions(-)
Title: Pipeline for Dose-Response Curve Analysis
Description: Provides a variety of tools for assessing dose response curves, with an emphasis
on toxicity test data. The main feature of this package are modular functions which can
be combined through the namesake pipeline, 'runtoxdrc', to automate the analysis for large
and complex datasets. This includes optional data preprocessing steps, like outlier detection,
solvent effects, blank correction, averaging technical replicates, and much more.
Additionally, this pipeline is adaptable to any long form dataset, and does not require
specific column or group naming to work.
Author: Jack Salole [aut, cre]
Maintainer: Jack Salole <salolej@mcmaster.ca>
Diff between toxdrc versions 1.0.1 dated 2026-01-14 and 2.0.0 dated 2026-07-28
DESCRIPTION | 18 - LICENSE | 2 MD5 | 121 +++++--- NAMESPACE | 7 NEWS.md |only R/acutetox.R |only R/averageresponse.R | 122 ++++++-- R/blankcorrect.R | 23 - R/cellglow.R | 4 R/checktoxicity.R | 85 ++++-- R/condense_results.R | 131 +++++---- R/config_runtoxdrc.R | 168 ++++++++++-- R/default_model_list.R |only R/empty_ecx.R |only R/flagCV.R | 25 - R/getECx.R | 127 +++++++-- R/getmetadata.R | 21 + R/has_partial_effect.R |only R/interpolateECx.R |only R/modelcomp.R | 266 ++++++++++++++++--- R/mselect2.R | 90 ++++++ R/normalizeresponse.R | 26 - R/pctl.R | 22 - R/removeoutliers.R | 29 +- R/runtoxdrc.R | 224 +++++++++++++++- R/toxdrc_preset.R |only R/toxresult.R | 4 R/validate.R |only R/validate_model_list.R |only README.md | 368 +++++++++++++-------------- data/acutetox.rda |only inst |only man/acutetox.Rd |only man/averageresponse.Rd | 32 +- man/cellglow.Rd | 2 man/checktoxicity.Rd | 2 man/config_runtoxdrc.Rd | 12 man/flagCV.Rd | 2 man/getECx.Rd | 20 + man/getmetadata.Rd | 4 man/interpolateECx.Rd |only man/modelcomp.Rd | 56 +++- man/print.toxdrc_preset.Rd |only man/removeoutliers.Rd | 7 man/runtoxdrc.Rd | 77 ++++- man/toxdrc-package.Rd | 2 man/toxdrc_endpoint.Rd |only man/toxdrc_modelling.Rd | 42 ++- man/toxdrc_output.Rd | 2 man/toxdrc_preset.Rd |only man/toxdrc_toxicity.Rd | 4 man/toxresult.Rd | 2 tests/testthat/test-acutetox.R |only tests/testthat/test-averageresponse.R | 77 +++++ tests/testthat/test-binomial.R |only tests/testthat/test-blankcorrect.R | 81 +++++ tests/testthat/test-checktoxicity.R | 155 ++++++++++- tests/testthat/test-condense_results.R |only tests/testthat/test-first_non_missing.R | 27 + tests/testthat/test-flagCV.R | 86 ++++++ tests/testthat/test-getECx.R | 202 ++++++++++++-- tests/testthat/test-getmetadata.R | 47 +++ tests/testthat/test-interpolateECx.R |only tests/testthat/test-modelcomp.R | 332 +++++++++++++++++++++++- tests/testthat/test-mselect2.R |only tests/testthat/test-normalizeresponse.R | 67 ++++ tests/testthat/test-pctl.R | 64 ++++ tests/testthat/test-removeoutliers.R | 62 ++++ tests/testthat/test-return-shapes.R |only tests/testthat/test-runtoxdrc.R | 251 +++++++++++++++++- tests/testthat/test-safe_drm.R |only tests/testthat/test-toxdrc_preset.R |only tests/testthat/test-validate.R |only tests/testthat/test-validate_model_list.R |only tests/testthat/test-validation-integration.R |only 75 files changed, 2912 insertions(+), 688 deletions(-)
Title: Data Simulation Based on Latent Factors
Description: Generates data based on latent factor models. Data can be continuous, polytomous, dichotomous, or mixed. Skews, cross-loadings, wording effects, population errors, and local dependencies can be added. All parameters can be manipulated. Data categorization is based on Garrido, Abad, and Ponsoda (2011) <doi:10.1177/0013164410389489>.
Author: Alexander Christensen [aut, cre] ,
Luis Eduardo Garrido [aut] ,
Maria Dolores Nieto Canaveras [aut],
Hudson Golino [aut] ,
Marcos Jimenez [aut],
Francisco Abad [ctb],
Eduardo Garcia-Garzon [ctb],
Vithor Franco [aut],
David Blackman [ctb] ,
Sebastiano [...truncated...]
Maintainer: Alexander Christensen <alexpaulchristensen@gmail.com>
Diff between latentFactoR versions 0.0.7 dated 2025-11-03 and 0.0.8 dated 2026-07-28
DESCRIPTION | 27 - MD5 | 65 +-- NAMESPACE | 10 NEWS | 63 +++ R/EKC.R | 5 R/ESEM.R | 26 - R/NEST.R | 12 R/add_cross_loadings.R | 533 +++++++++++++++----------- R/add_local_dependence.R | 615 +++++++++++++++++++++++++++++- R/add_methods_factors.R | 235 +++++++---- R/add_population_error.R | 192 +++------ R/add_wording_effects.R | 493 +++++++++++++----------- R/data_to_zipfs.R | 18 R/estimate_dimensions.R | 6 R/factor_forest.R | 31 - R/helpers-general.R | 282 ++++++++++++-- R/implied_hierarchical_values.R |only R/latentFactoR.R | 20 - R/methods.R | 223 ++++++++++- R/obtain_zipfs_parameters.R | 21 - R/simulate_factors.R | 509 +++++++++++++++---------- R/simulate_hierarchical_factors.R |only R/simulation_helpers.R | 4 R/utils-latentFactoR.R | 697 +++-------------------------------- R/zzz.R | 3 inst/CITATION | 11 inst/COPYRIGHTS |only man/ESEM.Rd | 8 man/add_cross_loadings.Rd | 6 man/latentFactoR-package.Rd | 8 man/simulate_factors.Rd | 23 - man/simulate_hierarchical_factors.Rd |only src |only 33 files changed, 2462 insertions(+), 1684 deletions(-)
Title: Heterogeneous Transition Network Analysis
Description: Implements the Heterogeneous Transition Network Analysis (HTNA)
method described by López-Pernas et al. (2026) <doi:10.1002/jcal.70285>.
The method is an extension of transition network analysis (TNA) where
actions or events belong to two or more distinct actor types (e.g. Human
and AI), preserving the actor type partition on the resulting network.
Provides a thin, focused API on top of the 'Nestimate' estimation engine
and the 'cograph' rendering engine, so downstream bootstrap, permutation,
reliability, centrality, and plotting functions treat each actor's
codes as a distinct node group.
Author: Sonsoles Lopez-Pernas [aut, cre, cph],
Kamila Misiejuk [aut, cph],
Mohammed Saqr [aut, cph]
Maintainer: Sonsoles Lopez-Pernas <sonsoles.lopez@uef.fi>
Diff between htna versions 0.1.0 dated 2026-07-06 and 0.3.1 dated 2026-07-28
DESCRIPTION | 10 - MD5 | 104 ++++++++++++-------- NAMESPACE | 11 ++ NEWS.md | 133 ++++++++++++++++++++++++++ R/as_igraph_htna.R |only R/association_rules_htna.R | 11 +- R/bayes_compare_htna.R |only R/build_htna.R | 124 ++++++++++++++++++++---- R/build_htna_clustering.R |only R/build_htna_mcml.R |only R/casedrop_reliability_htna.R | 11 +- R/certainty_htna.R |only R/compare_htna.R |only R/deprune_htna.R |only R/markov_order_test_htna.R | 11 +- R/mosaic_plot_htna.R | 6 - R/permutation_htna.R | 11 +- R/prune_htna.R |only R/pruning_details_htna.R |only R/reprune_htna.R |only R/sequence_compare_htna.R | 32 ++---- R/state_distribution_htna.R | 10 + R/state_frequencies_htna.R | 9 + R/summary_htna.R | 34 ++++++ R/utils.R | 47 ++++++++- README.md | 8 - inst/doc/htna.html | 4 inst/doc/input-formats.Rmd | 8 + inst/doc/input-formats.html | 42 +++++++- man/as.igraph.htna.Rd |only man/association_rules_htna.Rd | 31 +----- man/bayes_compare_htna.Rd |only man/build_htna.Rd | 39 +++++++ man/casedrop_reliability_htna.Rd | 43 +------- man/certainty_htna.Rd |only man/compare_htna.Rd |only man/deprune_htna.Rd |only man/markov_order_test_htna.Rd | 32 +----- man/mosaic_plot_htna.Rd | 14 -- man/permutation_htna.Rd | 40 +------ man/plot.htna_comparison_group.Rd |only man/prune_htna.Rd |only man/pruning_details_htna.Rd |only man/reprune_htna.Rd |only man/sequence_compare_htna.Rd | 41 ++------ man/state_distribution_htna.Rd | 8 - man/state_frequencies_htna.Rd | 8 + man/summary.htna.Rd | 3 tests/testthat/helper-fixtures.R | 6 + tests/testthat/test-alias-wrappers.R |only tests/testthat/test-as-igraph-htna.R |only tests/testthat/test-build_htna-clustering.R |only tests/testthat/test-build_htna-mcml.R |only tests/testthat/test-build_htna.R | 12 +- tests/testthat/test-casedrop-reliability.R | 10 + tests/testthat/test-centrality-stability.R | 5 tests/testthat/test-clustering-equivalence.R |only tests/testthat/test-compare-htna.R |only tests/testthat/test-coverage-extras.R | 6 - tests/testthat/test-markov-order-test.R | 13 ++ tests/testthat/test-permutation.R | 11 +- tests/testthat/test-reexports-viz.R | 38 ++++--- tests/testthat/test-summary-network-metrics.R |only tests/testthat/test-tna-equivalence.R | 48 ++++++++- tests/testthat/test-tna-verbs.R |only vignettes/articles/clustering.Rmd |only vignettes/input-formats.Rmd | 8 + 67 files changed, 737 insertions(+), 305 deletions(-)
Title: Sex- and Age-Standardized Metrics from the Centers for Disease
Control and Prevention (CDC) Growth Charts
Description: Calculation of sex- and age-standardized growth metrics
based on the 2000 CDC growth charts for children and adolescents
with ages of >= 24.0 to < 240 months. Provides functions to generate
z-scores and percentiles for weight, height, and body mass index (BMI)
using the LMS method (lambda-mu-sigma). Includes extended BMI z-scores
for values above the 95th percentile to more accurately characterize
the sex- and age-standardized BMI of children with very high BMIs.
Author: David Freedman [aut, cre]
Maintainer: David Freedman <DavidSFreedman@gmail.com>
Diff between cdcanthro versions 0.2.1 dated 2026-07-14 and 0.3.0 dated 2026-07-28
cdcanthro-0.2.1/cdcanthro/R/zzz.R |only cdcanthro-0.3.0/cdcanthro/DESCRIPTION | 14 +- cdcanthro-0.3.0/cdcanthro/MD5 | 11 +- cdcanthro-0.3.0/cdcanthro/NEWS.md |only cdcanthro-0.3.0/cdcanthro/R/cdcanthro.R | 154 +++++++++++++++-------------- cdcanthro-0.3.0/cdcanthro/R/sysdata.rda |binary cdcanthro-0.3.0/cdcanthro/build |only cdcanthro-0.3.0/cdcanthro/man/cdcanthro.Rd | 66 +++++++----- 8 files changed, 136 insertions(+), 109 deletions(-)
Title: Visualization of Regression Models
Description: Provides a convenient interface for constructing plots to
visualize the fit of regression models arising from a wide variety
of models in R ('lm', 'glm', 'coxph', 'rlm', 'gam', 'locfit', 'lmer',
'randomForest', etc.)
Author: Patrick Breheny [aut, cre] ,
Woodrow Burchett [ctb]
Maintainer: Patrick Breheny <patrick-breheny@uiowa.edu>
Diff between visreg versions 2.8.1 dated 2026-07-08 and 3.0.0 dated 2026-07-28
visreg-2.8.1/visreg/R/Response.R |only visreg-2.8.1/visreg/R/Terms.R |only visreg-2.8.1/visreg/R/abbrNum.R |only visreg-2.8.1/visreg/R/collapseVisregList.R |only visreg-2.8.1/visreg/R/factorAxis.R |only visreg-2.8.1/visreg/R/factorPlot.R |only visreg-2.8.1/visreg/R/fillFrame.R |only visreg-2.8.1/visreg/R/getXY.R |only visreg-2.8.1/visreg/R/ggContPlot.R |only visreg-2.8.1/visreg/R/ggFactorPlot.R |only visreg-2.8.1/visreg/R/makeYName.R |only visreg-2.8.1/visreg/R/parseFormula.R |only visreg-2.8.1/visreg/R/plotVisreg2d.R |only visreg-2.8.1/visreg/R/plotVisregList.R |only visreg-2.8.1/visreg/R/printCond.R |only visreg-2.8.1/visreg/R/se.mlm.R |only visreg-2.8.1/visreg/R/setupCond.R |only visreg-2.8.1/visreg/R/setupD.R |only visreg-2.8.1/visreg/R/setupF.R |only visreg-2.8.1/visreg/R/setupV.R |only visreg-2.8.1/visreg/R/setupV2.R |only visreg-2.8.1/visreg/R/setupX.R |only visreg-2.8.1/visreg/R/subsetV.R |only visreg-2.8.1/visreg/R/toplegend.R |only visreg-2.8.1/visreg/R/visregFactorPanel.R |only visreg-2.8.1/visreg/R/visregLatticePlot.R |only visreg-2.8.1/visreg/R/visregList.R |only visreg-2.8.1/visreg/R/visregOverlayPlot.R |only visreg-2.8.1/visreg/R/visregPanel.R |only visreg-2.8.1/visreg/R/visregPlot.R |only visreg-2.8.1/visreg/R/visregPred.R |only visreg-2.8.1/visreg/R/visregResid.R |only visreg-2.8.1/visreg/inst/doc/visreg.rmd |only visreg-2.8.1/visreg/inst/tinytest/_enhances_glmmTMB.R |only visreg-2.8.1/visreg/inst/tinytest/_lme4predict.R |only visreg-2.8.1/visreg/inst/tinytest/_xtrans.r |only visreg-2.8.1/visreg/inst/tinytest/ggplot.R |only visreg-2.8.1/visreg/inst/tinytest/visregList.R |only visreg-2.8.1/visreg/man/visregList.Rd |only visreg-2.8.1/visreg/vignettes/visreg.rmd |only visreg-3.0.0/visreg/DESCRIPTION | 15 visreg-3.0.0/visreg/MD5 | 172 +++--- visreg-3.0.0/visreg/NAMESPACE | 9 visreg-3.0.0/visreg/NEWS.md | 91 ++- visreg-3.0.0/visreg/R/abbr_num.R |only visreg-3.0.0/visreg/R/build_visreg.R |only visreg-3.0.0/visreg/R/build_visreg2d.R |only visreg-3.0.0/visreg/R/collapse.R |only visreg-3.0.0/visreg/R/collapse_visreg_list.R |only visreg-3.0.0/visreg/R/compute_response.R |only visreg-3.0.0/visreg/R/compute_terms.R |only visreg-3.0.0/visreg/R/factor_axis_2d.R |only visreg-3.0.0/visreg/R/fill_frame.R |only visreg-3.0.0/visreg/R/finalize_visreg.R |only visreg-3.0.0/visreg/R/get_xy.R |only visreg-3.0.0/visreg/R/gg_cont_plot.R |only visreg-3.0.0/visreg/R/gg_factor_plot.R |only visreg-3.0.0/visreg/R/interacting_vars.R |only visreg-3.0.0/visreg/R/locate_source_data.R |only visreg-3.0.0/visreg/R/make_y_name.R |only visreg-3.0.0/visreg/R/parse_formula.R |only visreg-3.0.0/visreg/R/persp-visreg2d.R |only visreg-3.0.0/visreg/R/persp3d-visreg2d.R |only visreg-3.0.0/visreg/R/plot-visreg.R | 253 +++------ visreg-3.0.0/visreg/R/plot-visreg2d.R |only visreg-3.0.0/visreg/R/plot-visreg_list.R |only visreg-3.0.0/visreg/R/prep_2d_axes.R |only visreg-3.0.0/visreg/R/print_cond.R |only visreg-3.0.0/visreg/R/refit_if_needed.R |only visreg-3.0.0/visreg/R/resolve_trans.R |only visreg-3.0.0/visreg/R/se_mlm.R |only visreg-3.0.0/visreg/R/setup_cond.R |only visreg-3.0.0/visreg/R/setup_contrast_data.R |only visreg-3.0.0/visreg/R/setup_data.R |only visreg-3.0.0/visreg/R/setup_frame.R |only visreg-3.0.0/visreg/R/subset.R | 16 visreg-3.0.0/visreg/R/subset_xy.R |only visreg-3.0.0/visreg/R/visreg-package.R | 6 visreg-3.0.0/visreg/R/visreg.R | 292 ++++------ visreg-3.0.0/visreg/R/visreg2d.R | 151 ++--- visreg-3.0.0/visreg/R/visreg_coef.R | 4 visreg-3.0.0/visreg/R/visreg_list.R |only visreg-3.0.0/visreg/R/visreg_pred.R |only visreg-3.0.0/visreg/R/visreg_resid.R |only visreg-3.0.0/visreg/R/zzz.R |only visreg-3.0.0/visreg/README.md | 20 visreg-3.0.0/visreg/build/vignette.rds |binary visreg-3.0.0/visreg/inst/doc/visreg.R | 36 - 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Title: Revert Spreadsheet Date Auto-Conversion to the Numbers Typed
Description: Spreadsheets silently turn entries such as '30.3' into dates, so
the imported data carry date serials instead of the numbers that were
typed. Reading the workbook directly recovers those numbers without
guesswork: an 'xlsx' file states its own date system, and records which
cells are formatted as dates and in which field order, so the values to
repair are identified from the file rather than inferred from their
magnitude. Functions are also provided for data already imported, where
that evidence is no longer available, using conservative and configurable
detection.
Author: Hercules R. Freitas [aut, cre, cph]
Maintainer: Hercules R. Freitas <hercules.freitas@uerj.br>
Diff between unexcel versions 0.1.0 dated 2025-10-08 and 0.2.0 dated 2026-07-28
unexcel-0.1.0/unexcel/README |only unexcel-0.1.0/unexcel/inst/doc/unexcel.R |only unexcel-0.1.0/unexcel/inst/doc/unexcel.Rmd |only unexcel-0.1.0/unexcel/inst/doc/unexcel.html |only unexcel-0.1.0/unexcel/vignettes/unexcel.Rmd |only unexcel-0.2.0/unexcel/DESCRIPTION | 48 +- unexcel-0.2.0/unexcel/MD5 | 46 +- unexcel-0.2.0/unexcel/NAMESPACE | 11 unexcel-0.2.0/unexcel/NEWS.md |only unexcel-0.2.0/unexcel/R/restore.R | 299 +++++++++++------ unexcel-0.2.0/unexcel/R/serial.R |only unexcel-0.2.0/unexcel/R/unexcel-package.R |only unexcel-0.2.0/unexcel/R/xlsx-api.R |only unexcel-0.2.0/unexcel/R/xlsx-parse.R |only unexcel-0.2.0/unexcel/README.md |only unexcel-0.2.0/unexcel/build/vignette.rds |binary unexcel-0.2.0/unexcel/inst/doc/excel-date-systems.R |only unexcel-0.2.0/unexcel/inst/doc/excel-date-systems.Rmd |only unexcel-0.2.0/unexcel/inst/doc/excel-date-systems.html |only unexcel-0.2.0/unexcel/inst/doc/getting-started.R |only unexcel-0.2.0/unexcel/inst/doc/getting-started.Rmd |only unexcel-0.2.0/unexcel/inst/doc/getting-started.html |only unexcel-0.2.0/unexcel/inst/extdata |only unexcel-0.2.0/unexcel/man/excel_date_cells.Rd |only unexcel-0.2.0/unexcel/man/excel_date_columns.Rd |only unexcel-0.2.0/unexcel/man/excel_date_system.Rd |only unexcel-0.2.0/unexcel/man/excel_origin.Rd |only unexcel-0.2.0/unexcel/man/excel_sheets.Rd |only unexcel-0.2.0/unexcel/man/figures |only unexcel-0.2.0/unexcel/man/fix_serial_columns.Rd | 63 ++- unexcel-0.2.0/unexcel/man/restore_day_month.Rd | 81 +++- unexcel-0.2.0/unexcel/man/serial_to_day_month.Rd |only unexcel-0.2.0/unexcel/man/unexcel-package.Rd |only unexcel-0.2.0/unexcel/man/unexcel_xlsx.Rd |only unexcel-0.2.0/unexcel/tests |only unexcel-0.2.0/unexcel/vignettes/excel-date-systems.Rmd |only unexcel-0.2.0/unexcel/vignettes/getting-started.Rmd |only 37 files changed, 378 insertions(+), 170 deletions(-)
Title: Detect and Remove Chimeras from Amplicon Sequence Analysis Data
Description: Detect and remove chimeras from your amplicon sequence analysis
using reference-based or de novo approaches. The 'rchime' package
implements the 'VSEARCH' algorithms described in Rognes et al. (2016)
<doi:10.7717/peerj.2584>. 'VSEARCH' builds on the work of Edgar,R.C. et al.
(2011) <doi:10.1093/bioinformatics/btr381>.
Author: Sarah Westcott [aut] ,
Pat Schloss [cph, cre] ,
Torbjorn Rognes [cph],
Frederic Mahe [cph],
Tomas Flouri [cph],
Christopher Quince [cph],
Ben Nichols [cph]
Maintainer: Pat Schloss <pschloss@umich.edu>
Diff between rchime versions 0.1.0 dated 2026-07-23 and 0.1.1 dated 2026-07-28
rchime-0.1.0/rchime/man/rchime.data.frame.Rd |only rchime-0.1.0/rchime/man/rchime.strollur.Rd |only rchime-0.1.1/rchime/DESCRIPTION | 6 rchime-0.1.1/rchime/MD5 | 44 rchime-0.1.1/rchime/NEWS.md | 6 rchime-0.1.1/rchime/R/rchime.R | 550 +++--------- rchime-0.1.1/rchime/README.md | 35 rchime-0.1.1/rchime/inst/CITATION | 4 rchime-0.1.1/rchime/inst/doc/chimera_report.R | 13 rchime-0.1.1/rchime/inst/doc/chimera_report.Rmd | 13 rchime-0.1.1/rchime/inst/doc/chimera_report.html | 146 +-- rchime-0.1.1/rchime/inst/doc/denovo_based_detection.R | 42 rchime-0.1.1/rchime/inst/doc/denovo_based_detection.Rmd | 65 - rchime-0.1.1/rchime/inst/doc/denovo_based_detection.html | 203 +--- rchime-0.1.1/rchime/inst/doc/reference_based_detection.R | 13 rchime-0.1.1/rchime/inst/doc/reference_based_detection.Rmd | 25 rchime-0.1.1/rchime/inst/doc/reference_based_detection.html | 145 +-- rchime-0.1.1/rchime/man/rchime.Rd | 60 + rchime-0.1.1/rchime/src/cpu.cc | 153 +-- rchime-0.1.1/rchime/tests/testthat/test-rchime_dataframe.R | 239 ++--- rchime-0.1.1/rchime/tests/testthat/test-rchime_strollur.R | 298 +++--- rchime-0.1.1/rchime/vignettes/chimera_report.Rmd | 13 rchime-0.1.1/rchime/vignettes/denovo_based_detection.Rmd | 65 - rchime-0.1.1/rchime/vignettes/reference_based_detection.Rmd | 25 24 files changed, 845 insertions(+), 1318 deletions(-)
Title: Penalized Estimation for Latent Variable Models with 'lavaan'
Description: Extends the popular 'lavaan' package by adding penalized
estimation capabilities. It supports penalty on individual parameters
as well as the difference between parameters.
Author: Hok Chio Lai [aut, cre]
Maintainer: Hok Chio (Mark) Lai <marklhc@gmail.com>
Diff between plavaan versions 0.0.1 dated 2025-12-30 and 0.0.2 dated 2026-07-28
DESCRIPTION | 10 MD5 | 53 +- NAMESPACE | 4 NEWS.md | 9 R/alf.R | 10 R/multistart.R |only R/penalized.R | 263 ++++++++---- README.md | 4 build/vignette.rds |binary inst/doc/approximate-invariance.Rmd | 3 inst/doc/approximate-invariance.html | 61 +- inst/doc/negative-loading.R |only inst/doc/negative-loading.Rmd |only inst/doc/negative-loading.html |only inst/doc/penalized-cat.R | 2 inst/doc/penalized-cat.Rmd | 4 inst/doc/penalized-cat.html | 732 ++++++++++++++++++----------------- inst/doc/penalized-fa.html | 281 ++++++------- inst/doc/penalized-multistart.R |only inst/doc/penalized-multistart.Rmd |only inst/doc/penalized-multistart.html |only inst/doc/standard-errors.R | 36 - inst/doc/standard-errors.Rmd | 37 - inst/doc/standard-errors.html | 108 ++--- man/penalized_est.Rd | 12 man/penalized_est_multistart.Rd |only tests/testthat/test-alf.R | 1 tests/testthat/test-multistart.R |only vignettes/approximate-invariance.Rmd | 3 vignettes/negative-loading.Rmd |only vignettes/penalized-cat.Rmd | 4 vignettes/penalized-multistart.Rmd |only vignettes/standard-errors.Rmd | 37 - 33 files changed, 871 insertions(+), 803 deletions(-)
Title: Univariate and Bivariate Latent Change Score Modelling
Description: Helper functions to implement univariate and bivariate latent change score models in R using the 'lavaan' package.
For details about Latent Change Score Modeling (LCSM) see McArdle (2009) <doi:10.1146/annurev.psych.60.110707.163612> and Grimm, An, McArdle, Zonderman and Resnick (2012) <doi:10.1080/10705511.2012.659627>.
The package automatically generates 'lavaan' syntax for different model specifications and varying timepoints.
The 'lavaan' syntax generated by this package can be returned and further specifications can be added manually.
Longitudinal plots as well as simplified path diagrams can be created to visualise data and model specifications.
Estimated model parameters and fit statistics can be extracted as data frames.
Data for different univariate and bivariate LCSM can be simulated by specifying estimates for model parameters to explore their effects.
This package combines the strengths of other R packages like 'lavaan', 'broom', and 'semPlot' by generating 'lava [...truncated...]
Author: Milan Wiedemann [aut, cre] ,
Graham M Thew [ctb] ,
Urska Kosir [ctb] ,
Anke Ehlers [ths] ,
Mental Health Research UK [fnd]
Maintainer: Milan Wiedemann <milan.wiedemann@gmail.com>
Diff between lcsm versions 0.3.2 dated 2023-02-25 and 0.3.3 dated 2026-07-28
DESCRIPTION | 21 +-- MD5 | 60 +++++----- NEWS.md | 4 R/data.R | 92 +++++++--------- R/fit_lcsm.R | 61 ++++------ R/sim_lcsm_data.R | 176 +++++++++++++++++++++---------- R/specify_lcsm_lavaan_syntax.R | 52 ++++----- README.md | 95 +++++++++------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/lcsm-parameters.R | 2 inst/doc/lcsm-parameters.html | 3 inst/doc/v0-longitudinal-plots.R | 10 - inst/doc/v0-longitudinal-plots.html | 31 +++-- inst/doc/v1-lavaan-syntax.R | 2 inst/doc/v1-lavaan-syntax.html | 1 inst/doc/v2-path-diagrams.R | 6 - inst/doc/v2-path-diagrams.html | 9 - inst/doc/v3-extract-tutorial.R | 2 inst/doc/v3-extract-tutorial.html | 33 +---- inst/doc/v4-simulate-data.R | 6 - inst/doc/v4-simulate-data.html | 23 ++-- man/data_bi_lcsm.Rd | 42 +++---- man/data_uni_lcsm.Rd | 22 +-- man/figures/README-unnamed-chunk-3-1.png |binary man/fit_bi_lcsm.Rd | 38 +++--- man/fit_uni_lcsm.Rd | 15 +- man/lcsm_data.Rd | 22 +-- man/sim_bi_lcsm.Rd | 2 man/specify_bi_lcsm.Rd | 46 ++++---- tests/testthat/test-sim-data.R | 4 31 files changed, 471 insertions(+), 409 deletions(-)
Title: Download Data from the World Inequality Database
Description: Download data from the online World Inequality Database directly
into R. Data are retrieved from WID.world's online data service. The World
Inequality Database is an extensive source on the historical evolution of
the distribution of income and wealth both within and between countries. It
relies on the combined effort of an international network of over a hundred
researchers covering more than seventy countries from all continents.
Author: Thomas Blanchet [aut],
Ignacio Flores [cre]
Maintainer: Ignacio Flores <stats@wid.world>
Diff between wid versions 0.0.2 dated 2026-07-08 and 0.0.3 dated 2026-07-28
DESCRIPTION | 13 - MD5 | 19 + NEWS.md |only R/check-args.R | 90 ++++----- R/download-wid.R | 87 +++++--- R/get-requests.R | 10 - README.md | 4 man/download_wid.Rd | 32 +-- tests/testthat/test_download.R | 29 +- tests/testthat/test_download_contract.R | 310 ++++++++++++++++++++++++-------- tests/testthat/test_get_requests.R | 4 11 files changed, 399 insertions(+), 199 deletions(-)
Title: Stabilize Function Arguments
Description: A set of consistent, opinionated functions to quickly check
function arguments, coerce them to the desired configuration, or
deliver informative error messages when that is not possible.
Author: Jon Harmon [aut, cre, cph]
Maintainer: Jon Harmon <jonthegeek@gmail.com>
Diff between stbl versions 0.3.0 dated 2026-04-04 and 0.4.0 dated 2026-07-28
stbl-0.3.0/stbl/man/dot-are_not_dbl_ish_chr.Rd |only stbl-0.3.0/stbl/man/dot-are_not_int_ish_chr.Rd |only stbl-0.3.0/stbl/man/dot-to_cls_from_list.Rd |only stbl-0.4.0/stbl/DESCRIPTION | 14 stbl-0.4.0/stbl/MD5 | 368 +++++--- stbl-0.4.0/stbl/NAMESPACE | 49 - stbl-0.4.0/stbl/NEWS.md | 130 +- stbl-0.4.0/stbl/R/aaa-conditions.R | 403 +++++---- stbl-0.4.0/stbl/R/aaa-shared_params.R | 8 stbl-0.4.0/stbl/R/are_dbl_ish.R | 19 stbl-0.4.0/stbl/R/are_fct_ish.R | 15 stbl-0.4.0/stbl/R/are_fn_ish.R |only stbl-0.4.0/stbl/R/are_int_ish.R | 26 stbl-0.4.0/stbl/R/are_lgl_ish.R | 5 stbl-0.4.0/stbl/R/c_api.R |only stbl-0.4.0/stbl/R/check.R | 33 stbl-0.4.0/stbl/R/cls_unexported.R | 37 stbl-0.4.0/stbl/R/pkg_abort.R | 164 ++- stbl-0.4.0/stbl/R/pkg_inform.R |only stbl-0.4.0/stbl/R/pkg_warn.R |only stbl-0.4.0/stbl/R/specify_cls.R | 31 stbl-0.4.0/stbl/R/stabilize_chr.R | 35 stbl-0.4.0/stbl/R/stabilize_dbl.R | 9 stbl-0.4.0/stbl/R/stabilize_df.R | 6 stbl-0.4.0/stbl/R/stabilize_lst.R | 8 stbl-0.4.0/stbl/R/stbl-package.R | 2 stbl-0.4.0/stbl/R/to.R |only stbl-0.4.0/stbl/R/to_chr.R | 164 +++ stbl-0.4.0/stbl/R/to_dbl.R | 67 - stbl-0.4.0/stbl/R/to_df.R | 14 stbl-0.4.0/stbl/R/to_fct.R | 57 - stbl-0.4.0/stbl/R/to_fn.R |only stbl-0.4.0/stbl/R/to_int.R | 129 ++ stbl-0.4.0/stbl/R/to_lgl.R | 49 - stbl-0.4.0/stbl/R/to_lst.R | 15 stbl-0.4.0/stbl/R/to_null.R | 3 stbl-0.4.0/stbl/R/utils-conditions.R |only stbl-0.4.0/stbl/R/utils.R | 17 stbl-0.4.0/stbl/README.md | 2 stbl-0.4.0/stbl/build/vignette.rds |binary stbl-0.4.0/stbl/inst/include |only stbl-0.4.0/stbl/man/are_chr_ish.Rd | 18 stbl-0.4.0/stbl/man/are_dbl_ish.Rd | 18 stbl-0.4.0/stbl/man/are_fct_ish.Rd | 30 stbl-0.4.0/stbl/man/are_fn_ish.Rd |only stbl-0.4.0/stbl/man/are_int_ish.Rd | 18 stbl-0.4.0/stbl/man/are_lgl_ish.Rd | 18 stbl-0.4.0/stbl/man/c_x_to_y.Rd |only stbl-0.4.0/stbl/man/dot-are_not_fct_ish_chr.Rd | 44 stbl-0.4.0/stbl/man/dot-call_specified_fn.Rd | 5 stbl-0.4.0/stbl/man/dot-capture_first_pkg_condition.Rd |only stbl-0.4.0/stbl/man/dot-check_all_named.Rd | 2 stbl-0.4.0/stbl/man/dot-check_cast_failures.Rd | 3 stbl-0.4.0/stbl/man/dot-check_chr_to_int_failures.Rd | 7 stbl-0.4.0/stbl/man/dot-check_cpx_to_int_failures.Rd |only stbl-0.4.0/stbl/man/dot-check_dbl_to_int_failures.Rd |only stbl-0.4.0/stbl/man/dot-check_function_allowed.Rd | 2 stbl-0.4.0/stbl/man/dot-check_is_not_primitive.Rd | 2 stbl-0.4.0/stbl/man/dot-check_lst_failures.Rd |only stbl-0.4.0/stbl/man/dot-check_na.Rd | 5 stbl-0.4.0/stbl/man/dot-check_not_jagged.Rd | 6 stbl-0.4.0/stbl/man/dot-check_scalar.Rd | 5 stbl-0.4.0/stbl/man/dot-check_size.Rd | 5 stbl-0.4.0/stbl/man/dot-check_x_no_more_than_y.Rd | 2 stbl-0.4.0/stbl/man/dot-chr_from_fn_sym.Rd |only stbl-0.4.0/stbl/man/dot-chr_from_op_call.Rd |only stbl-0.4.0/stbl/man/dot-cli_escape.Rd | 38 stbl-0.4.0/stbl/man/dot-cli_mark.Rd | 40 stbl-0.4.0/stbl/man/dot-coerce_fct_levels.Rd | 2 stbl-0.4.0/stbl/man/dot-coerce_fct_levels_impl.Rd | 3 stbl-0.4.0/stbl/man/dot-coerce_fct_to_na.Rd | 46 - stbl-0.4.0/stbl/man/dot-collapse_dash.Rd | 36 stbl-0.4.0/stbl/man/dot-compile_dash.Rd | 36 stbl-0.4.0/stbl/man/dot-compile_pkg_condition_classes.Rd | 44 stbl-0.4.0/stbl/man/dot-compile_pkg_error_classes.Rd | 44 stbl-0.4.0/stbl/man/dot-compile_pkg_message_classes.Rd |only stbl-0.4.0/stbl/man/dot-compile_pkg_warning_classes.Rd |only stbl-0.4.0/stbl/man/dot-construct_specification_fn.Rd | 78 - stbl-0.4.0/stbl/man/dot-construct_stabilizer_symbol.Rd | 44 stbl-0.4.0/stbl/man/dot-describe_failure_chr.Rd | 48 - stbl-0.4.0/stbl/man/dot-elements_are_cls_ish.Rd | 30 stbl-0.4.0/stbl/man/dot-expect_pkg_condition_snapshot.Rd |only stbl-0.4.0/stbl/man/dot-fast_false.Rd | 37 stbl-0.4.0/stbl/man/dot-find_failures.Rd | 48 - stbl-0.4.0/stbl/man/dot-glue2.Rd | 47 - stbl-0.4.0/stbl/man/dot-has_regex_pattern.Rd | 59 - stbl-0.4.0/stbl/man/dot-is_allowed_null.Rd | 48 - stbl-0.4.0/stbl/man/dot-is_covr_count_call.Rd |only stbl-0.4.0/stbl/man/dot-maybe_check_dupes.Rd | 38 stbl-0.4.0/stbl/man/dot-maybe_qualify_fn_name.Rd |only stbl-0.4.0/stbl/man/dot-same_fn.Rd |only stbl-0.4.0/stbl/man/dot-shared-params-check.Rd | 24 stbl-0.4.0/stbl/man/dot-shared-params.Rd | 3 stbl-0.4.0/stbl/man/dot-shared-return-conditions.Rd |only stbl-0.4.0/stbl/man/dot-stabilize_cls.Rd | 3 stbl-0.4.0/stbl/man/dot-stabilize_cls_scalar.Rd | 3 stbl-0.4.0/stbl/man/dot-stbl_abort.Rd | 79 - stbl-0.4.0/stbl/man/dot-stbl_inform.Rd |only stbl-0.4.0/stbl/man/dot-stbl_warn.Rd |only stbl-0.4.0/stbl/man/dot-stop_bad_levels.Rd | 6 stbl-0.4.0/stbl/man/dot-stop_cant_coerce.Rd | 3 stbl-0.4.0/stbl/man/dot-stop_function.Rd | 3 stbl-0.4.0/stbl/man/dot-stop_if_anon_fn.Rd |only stbl-0.4.0/stbl/man/dot-stop_incompatible.Rd | 3 stbl-0.4.0/stbl/man/dot-stop_must.Rd | 3 stbl-0.4.0/stbl/man/dot-stop_null.Rd | 3 stbl-0.4.0/stbl/man/dot-strip_covr_from_expr.Rd |only stbl-0.4.0/stbl/man/dot-to_chr_impl.Rd |only stbl-0.4.0/stbl/man/dot-to_cls_from_fct.Rd | 3 stbl-0.4.0/stbl/man/dot-to_cls_scalar.Rd | 3 stbl-0.4.0/stbl/man/dot-to_df_vector.Rd | 4 stbl-0.4.0/stbl/man/dot-to_null.Rd | 3 stbl-0.4.0/stbl/man/dot-to_num_from_complex.Rd | 3 stbl-0.4.0/stbl/man/dot-validate_named_elements.Rd | 3 stbl-0.4.0/stbl/man/expect_pkg_error_snapshot.Rd | 7 stbl-0.4.0/stbl/man/expect_pkg_message_classes.Rd |only stbl-0.4.0/stbl/man/expect_pkg_message_snapshot.Rd |only stbl-0.4.0/stbl/man/expect_pkg_warning_classes.Rd |only stbl-0.4.0/stbl/man/expect_pkg_warning_snapshot.Rd |only stbl-0.4.0/stbl/man/figures |only stbl-0.4.0/stbl/man/grapes-and-and-grapes.Rd | 46 - stbl-0.4.0/stbl/man/object_type.Rd | 48 - stbl-0.4.0/stbl/man/pkg_abort.Rd | 118 +- stbl-0.4.0/stbl/man/pkg_inform.Rd |only stbl-0.4.0/stbl/man/pkg_warn.Rd |only stbl-0.4.0/stbl/man/reexports.Rd | 34 stbl-0.4.0/stbl/man/specify_chr.Rd | 21 stbl-0.4.0/stbl/man/specify_dbl.Rd | 21 stbl-0.4.0/stbl/man/specify_df.Rd | 21 stbl-0.4.0/stbl/man/specify_fct.Rd | 21 stbl-0.4.0/stbl/man/specify_int.Rd | 21 stbl-0.4.0/stbl/man/specify_lgl.Rd | 21 stbl-0.4.0/stbl/man/specify_lst.Rd | 23 stbl-0.4.0/stbl/man/stabilize_arg.Rd | 18 stbl-0.4.0/stbl/man/stabilize_chr.Rd | 50 - stbl-0.4.0/stbl/man/stabilize_dbl.Rd | 25 stbl-0.4.0/stbl/man/stabilize_df.Rd | 29 stbl-0.4.0/stbl/man/stabilize_fct.Rd | 27 stbl-0.4.0/stbl/man/stabilize_int.Rd | 25 stbl-0.4.0/stbl/man/stabilize_lgl.Rd | 25 stbl-0.4.0/stbl/man/stabilize_lst.Rd | 27 stbl-0.4.0/stbl/man/stabilize_present.Rd | 27 stbl-0.4.0/stbl/man/stbl-package.Rd | 55 - stbl-0.4.0/stbl/man/to.Rd |only stbl-0.4.0/stbl/man/to_df.Rd | 7 stbl-0.4.0/stbl/man/to_fn.Rd |only stbl-0.4.0/stbl/man/to_lst.Rd | 19 stbl-0.4.0/stbl/src |only stbl-0.4.0/stbl/tests/testthat/_problems |only stbl-0.4.0/stbl/tests/testthat/_snaps/aaa-conditions.md | 15 stbl-0.4.0/stbl/tests/testthat/_snaps/check.md | 186 ++-- stbl-0.4.0/stbl/tests/testthat/_snaps/pkg_inform.md |only stbl-0.4.0/stbl/tests/testthat/_snaps/pkg_warn.md |only stbl-0.4.0/stbl/tests/testthat/_snaps/to.md |only stbl-0.4.0/stbl/tests/testthat/_snaps/to_chr.md | 126 +- stbl-0.4.0/stbl/tests/testthat/_snaps/to_df.md | 140 +-- stbl-0.4.0/stbl/tests/testthat/_snaps/to_fct.md | 20 stbl-0.4.0/stbl/tests/testthat/_snaps/to_fn.md |only stbl-0.4.0/stbl/tests/testthat/_snaps/to_int.md | 80 + stbl-0.4.0/stbl/tests/testthat/_snaps/to_lst.md | 20 stbl-0.4.0/stbl/tests/testthat/helper-callable_c_functions.R |only stbl-0.4.0/stbl/tests/testthat/helper-wrap.R | 1 stbl-0.4.0/stbl/tests/testthat/test-aaa-conditions.R | 22 stbl-0.4.0/stbl/tests/testthat/test-are_fct_ish.R | 6 stbl-0.4.0/stbl/tests/testthat/test-are_fn_ish.R |only stbl-0.4.0/stbl/tests/testthat/test-are_int_ish.R | 6 stbl-0.4.0/stbl/tests/testthat/test-c_api.R |only stbl-0.4.0/stbl/tests/testthat/test-callable_c_functions.R |only stbl-0.4.0/stbl/tests/testthat/test-cls_unexported.R | 57 - stbl-0.4.0/stbl/tests/testthat/test-pkg_abort.R | 53 + stbl-0.4.0/stbl/tests/testthat/test-pkg_inform.R |only stbl-0.4.0/stbl/tests/testthat/test-pkg_warn.R |only stbl-0.4.0/stbl/tests/testthat/test-specify_cls.R | 3 stbl-0.4.0/stbl/tests/testthat/test-specify_df.R | 3 stbl-0.4.0/stbl/tests/testthat/test-stabilize_chr.R | 5 stbl-0.4.0/stbl/tests/testthat/test-stabilize_df.R | 10 stbl-0.4.0/stbl/tests/testthat/test-stabilize_lst.R | 488 +++++------ stbl-0.4.0/stbl/tests/testthat/test-to.R |only stbl-0.4.0/stbl/tests/testthat/test-to_chr.R | 259 +++-- stbl-0.4.0/stbl/tests/testthat/test-to_df.R | 19 stbl-0.4.0/stbl/tests/testthat/test-to_fct.R | 37 stbl-0.4.0/stbl/tests/testthat/test-to_fn.R |only stbl-0.4.0/stbl/tests/testthat/test-to_int.R | 55 + stbl-0.4.0/stbl/tests/testthat/test-to_lst.R | 23 stbl-0.4.0/stbl/tests/testthat/test-utils-conditions.R |only 185 files changed, 3131 insertions(+), 2226 deletions(-)
Title: Genotyping Triploids/Tetraploids (or Diploids) from Luminescence
Data
Description: Genotyping of triploid individuals from luminescence data (marker probeset A and B). Works also for diploids and tetraploids.
Three main functions: Create_Dataset_from_file() to build dataset ; Clustering_parallele_from_dir() that regroups individuals with a same genotype based on proximity and
Genotyping_parallele_from_dir() that assigns a genotype to each cluster. For Shiny interface use: launch_GenoShiny().
Author: Julien Roche [aut, cre],
Florence Phocas [aut],
Mathieu Besson [aut],
Pierre Patrice [aut],
Marc Vandeputte [aut],
Francois Allal [aut],
Pierrick Haffray [aut]
Maintainer: Julien Roche <julien.roche@inrae.fr>
Diff between GenoTriplo versions 1.1.3 dated 2025-03-25 and 2.2.1 dated 2026-07-28
GenoTriplo-1.1.3/GenoTriplo/R/GenoTriplo_to_clust.R |only GenoTriplo-1.1.3/GenoTriplo/R/GenoTriplo_to_geno.R |only GenoTriplo-1.1.3/GenoTriplo/data |only GenoTriplo-1.1.3/GenoTriplo/inst/sh |only GenoTriplo-1.1.3/GenoTriplo/man/Create_Dataset.Rd |only GenoTriplo-1.1.3/GenoTriplo/man/GenoTriplo_to_clust.Rd |only GenoTriplo-1.1.3/GenoTriplo/man/GenoTriplo_to_geno.Rd |only GenoTriplo-1.1.3/GenoTriplo/man/Run_Clustering.Rd |only GenoTriplo-1.1.3/GenoTriplo/man/Run_Genotyping.Rd |only GenoTriplo-2.2.1/GenoTriplo/DESCRIPTION | 21 GenoTriplo-2.2.1/GenoTriplo/MD5 | 58 GenoTriplo-2.2.1/GenoTriplo/NAMESPACE | 19 GenoTriplo-2.2.1/GenoTriplo/R/App_GenoTriploShiny.R | 1017 +++------- GenoTriplo-2.2.1/GenoTriplo/R/function_GenoTot_pop_dif.R | 13 GenoTriplo-2.2.1/GenoTriplo/R/function_GenoTot_pop_same.R | 324 +-- GenoTriplo-2.2.1/GenoTriplo/R/function_clustering.R | 186 - GenoTriplo-2.2.1/GenoTriplo/R/function_create_dataset.R | 242 +- GenoTriplo-2.2.1/GenoTriplo/R/function_create_genofiles.R |only GenoTriplo-2.2.1/GenoTriplo/R/function_keepMarkerdiplo.R | 320 +-- GenoTriplo-2.2.1/GenoTriplo/R/function_keepMarkertetra.R |only GenoTriplo-2.2.1/GenoTriplo/R/function_keepMarkertriplo.R | 530 ++--- GenoTriplo-2.2.1/GenoTriplo/R/function_manage_keepMarker.R |only GenoTriplo-2.2.1/GenoTriplo/R/function_run_clustering.R | 156 - GenoTriplo-2.2.1/GenoTriplo/R/function_run_genotyping.R | 322 +-- GenoTriplo-2.2.1/GenoTriplo/inst/extdata |only GenoTriplo-2.2.1/GenoTriplo/man/Clustering.Rd | 21 GenoTriplo-2.2.1/GenoTriplo/man/Clustering_from_dir.Rd |only GenoTriplo-2.2.1/GenoTriplo/man/Clustering_from_file.Rd |only GenoTriplo-2.2.1/GenoTriplo/man/Clustering_parallele_from_dir.Rd |only GenoTriplo-2.2.1/GenoTriplo/man/Create_Dataset_from_file.Rd |only GenoTriplo-2.2.1/GenoTriplo/man/Genotyping_from_file.Rd |only GenoTriplo-2.2.1/GenoTriplo/man/Genotyping_parallele_from_dir.Rd |only GenoTriplo-2.2.1/GenoTriplo/man/create_genofiles.Rd |only GenoTriplo-2.2.1/GenoTriplo/man/launch_GenoShiny.Rd | 6 34 files changed, 1464 insertions(+), 1771 deletions(-)
Title: Dynamic Water Balance a Hydrological Model
Description: A tool for hydrologic modelling using the Budyko
framework and the Dynamic Water Balance model with Dynamical Dimension
Search algorithm to calibrate the model and analyze the outputs from
interactive graphics. It allows to calculate the water availability
in basins and also some water fluxes represented by
the structure of the model.
See Zhang, L., N., Potter, K., Hickel, Y., Zhang, Q., Shao (2008) <DOI:10.1016/j.jhydrol.2008.07.021> "Water balance modeling over variable time scales based on the Budyko framework - Model development and testing", Journal of Hydrology, 360, 117–131.
See Tolson, B., C., Shoemaker (2007) <DOI:10.1029/2005WR004723> "Dynamically dimensioned search algorithm for computationally efficient watershed model calibration", Water Resources Research, 43, 1–16.
Author: Nicolas Duque [aut] ,
Carolina Vega [aut] ,
Jeffer Canon [aut],
Pedro Arboleda [aut] ,
David Zamora [aut, cre] ,
Camila Garcia [cot]
Maintainer: David Zamora <dazamoraa@unal.edu.co>
This is a re-admission after prior archival of version 1.0.0 dated 2020-08-18
Diff between DWBmodelUN versions 1.0.0 dated 2020-08-18 and 2.0.1 dated 2026-07-28
DWBmodelUN-1.0.0/DWBmodelUN/data/datalist |only DWBmodelUN-2.0.1/DWBmodelUN/DESCRIPTION | 30 DWBmodelUN-2.0.1/DWBmodelUN/MD5 | 73 DWBmodelUN-2.0.1/DWBmodelUN/NAMESPACE | 2 DWBmodelUN-2.0.1/DWBmodelUN/NEWS.md |only DWBmodelUN-2.0.1/DWBmodelUN/R/Coord_comparison.R | 194 DWBmodelUN-2.0.1/DWBmodelUN/R/DWBCalculator.R | 208 DWBmodelUN-2.0.1/DWBmodelUN/R/Sogamoso.R | 15 DWBmodelUN-2.0.1/DWBmodelUN/R/buildGRUmaps.R | 95 DWBmodelUN-2.0.1/DWBmodelUN/R/cellBasins.R | 71 DWBmodelUN-2.0.1/DWBmodelUN/R/dds.R | 205 DWBmodelUN-2.0.1/DWBmodelUN/R/funFU.R | 13 DWBmodelUN-2.0.1/DWBmodelUN/R/graphDWB.R | 380 DWBmodelUN-2.0.1/DWBmodelUN/R/init_state.R | 67 DWBmodelUN-2.0.1/DWBmodelUN/R/printVar.R | 97 DWBmodelUN-2.0.1/DWBmodelUN/R/readSetup.R | 46 DWBmodelUN-2.0.1/DWBmodelUN/R/upForcing.R | 166 DWBmodelUN-2.0.1/DWBmodelUN/R/varBasins.R | 17 DWBmodelUN-2.0.1/DWBmodelUN/README.md | 291 DWBmodelUN-2.0.1/DWBmodelUN/build/vignette.rds |binary DWBmodelUN-2.0.1/DWBmodelUN/inst/doc/examples_dwbmodel.R | 28 DWBmodelUN-2.0.1/DWBmodelUN/inst/doc/examples_dwbmodel.Rmd | 43 DWBmodelUN-2.0.1/DWBmodelUN/inst/doc/examples_dwbmodel.html | 6642 +++++++++++- DWBmodelUN-2.0.1/DWBmodelUN/man/Coord_comparison.Rd | 6 DWBmodelUN-2.0.1/DWBmodelUN/man/GRU.Rd | 5 DWBmodelUN-2.0.1/DWBmodelUN/man/basins.Rd | 7 DWBmodelUN-2.0.1/DWBmodelUN/man/buildGRUmaps.Rd | 12 DWBmodelUN-2.0.1/DWBmodelUN/man/cellBasins.Rd | 8 DWBmodelUN-2.0.1/DWBmodelUN/man/dds.Rd | 10 DWBmodelUN-2.0.1/DWBmodelUN/man/figures |only DWBmodelUN-2.0.1/DWBmodelUN/man/funFU.Rd | 5 DWBmodelUN-2.0.1/DWBmodelUN/man/graphDWB.Rd | 20 DWBmodelUN-2.0.1/DWBmodelUN/man/init_state.Rd | 22 DWBmodelUN-2.0.1/DWBmodelUN/man/printVar.Rd | 14 DWBmodelUN-2.0.1/DWBmodelUN/man/readSetup.Rd | 12 DWBmodelUN-2.0.1/DWBmodelUN/man/sogamoso.Rd | 2 DWBmodelUN-2.0.1/DWBmodelUN/man/upForcing.Rd | 43 DWBmodelUN-2.0.1/DWBmodelUN/vignettes/examples_dwbmodel.Rmd | 43 38 files changed, 7856 insertions(+), 1036 deletions(-)
Title: Tests for Variance Homogeneity
Description: Performs 18 omnibus tests yielding a total of 28 distinct methodological variations for testing the composite hypothesis of variance homogeneity.
Author: Gozde Cosar [aut],
Muhammed Ali Yilmaz [aut],
Merve Kasikci [aut],
Osman Dag [aut, cre]
Maintainer: Osman Dag <osman.dag@outlook.com>
Diff between vartest versions 1.5 dated 2026-04-22 and 1.6 dated 2026-07-28
DESCRIPTION | 10 MD5 | 6 man/select_vartest.Rd | 4 tests/testthat/testthat-vht.R | 614 +++++++++++++++++++++++++++++++++--------- 4 files changed, 493 insertions(+), 141 deletions(-)
Title: A Hypothesis Testing Framework for Validating an Assay for
Precision
Description: A common way of validating a biological assay for is through a
procedure, where m levels of an analyte are measured with n replicates at each
level, and if all m estimates of the coefficient of variation (CV) are less
than some prespecified level, then the assay is declared validated for precision
within the range of the m analyte levels. Two limitations of this procedure are:
there is no clear statistical statement of precision upon passing, and it is
unclear how to modify the procedure for assays with constant standard deviation.
We provide tools to convert such a procedure into a set of m hypothesis tests.
This reframing motivates the m:n:q procedure, which upon completion delivers
a 100q% upper confidence limit on the CV. Additionally, for a post-validation
assay output of y, the method gives an ``effective standard deviation interval''
of log(y) plus or minus r, which is a 68% confidence interval on log(mu), where
mu is the expected value of the assay output for that sample. Furth [...truncated...]
Author: Michael C Sachs [aut, cre],
Michael P Fay [aut]
Maintainer: Michael C Sachs <sachsmc@gmail.com>
Diff between testassay versions 0.1.1 dated 2020-06-03 and 0.1.3 dated 2026-07-28
DESCRIPTION | 20 MD5 | 22 NEWS | 52 - R/testassay.R | 6 README.md | 28 build/vignette.rds |binary inst/CITATION | 32 - inst/doc/GIAValidationExample.R | 164 ++--- inst/doc/GIAValidationExample.html | 1111 ++++++++++++++++++++----------------- man/lognormConstCVCI.Rd | 2 man/normConstCVCI.Rd | 2 man/testassay.Rd | 2 12 files changed, 798 insertions(+), 643 deletions(-)
Title: Stochastic Metafrontier Analysis
Description: Implements stochastic metafrontier analysis for productivity and
performance benchmarking across firms operating under different
technologies. Contains routines for the deterministic metafrontier envelope
of O'Donnell et al. (2008) <doi:10.1007/s00181-007-0119-4> via linear and
quadratic programming, and the stochastic metafrontier of Huang et al.
(2014) <doi:10.1007/s11123-014-0402-2>. Also supports latent class
stochastic metafrontier analysis and sample selection correction stochastic
metafrontier models. Depends on the 'sfaR' package by Dakpo et al. (2023)
<https://CRAN.R-project.org/package=sfaR>.
Author: Sulman Olieko Owili [aut, cre]
Maintainer: Sulman Olieko Owili <oliekosulman@gmail.com>
Diff between smfa versions 1.0.0 dated 2026-04-28 and 1.0.1 dated 2026-07-28
DESCRIPTION | 9 MD5 | 56 NEWS.md | 26 R/smfa.R | 50 R/startup_msg.R | 6 README.md | 2339 ++++++++++++++++++------ inst/CITATION | 2 inst/doc/efficiency-extraction.R | 45 inst/doc/efficiency-extraction.Rmd | 45 inst/doc/efficiency-extraction.html | 730 ++++--- inst/doc/getting-started.R | 29 inst/doc/getting-started.Rmd | 29 inst/doc/getting-started.html | 542 ++--- inst/doc/sfacross-metafrontier.R | 37 inst/doc/sfacross-metafrontier.Rmd | 37 inst/doc/sfacross-metafrontier.html | 2623 +++++++++++++-------------- inst/doc/sfalcmcross-metafrontier.R | 35 inst/doc/sfalcmcross-metafrontier.Rmd | 35 inst/doc/sfalcmcross-metafrontier.html | 1271 ++++++------- inst/doc/sfaselectioncross-metafrontier.R | 35 inst/doc/sfaselectioncross-metafrontier.Rmd | 35 inst/doc/sfaselectioncross-metafrontier.html | 1804 +++++++++--------- man/smfa.Rd | 49 tests |only vignettes/efficiency-extraction.Rmd | 45 vignettes/getting-started.Rmd | 29 vignettes/sfacross-metafrontier.Rmd | 37 vignettes/sfalcmcross-metafrontier.Rmd | 35 vignettes/sfaselectioncross-metafrontier.Rmd | 35 29 files changed, 5978 insertions(+), 4072 deletions(-)
Title: 'Constrained Quantile Regression with B-Splines'
Description: Quantile regression with B-splines under shape constraints.
The initial version with cubic splines is now augmented with splines
of degree 1 to 4. Constraints for degrees 3 (monotone) and 4
(monotone and convex) use the Karlin-Studden SOCP characterization
for the sign of the polynomial, while other constraints applied
at the knots are added as linear problems. The method for cubic
splines is described in Abbes (2026) <doi:10.5281/zenodo.17427913>.
Other formulations are simple consequences of the other given
references. This R implementation is intended for demonstration
and prototyping. All B-spline and polynomial functions have been
rewritten for consistency. An equivalent Python package is available
at <https://pypi.org/project/BsplineQuantRegpy/>.
Author: Alexandre Abbes [aut, cre]
Maintainer: Alexandre Abbes <alexandre.abbes@proton.me>
Diff between BsplineQuantReg versions 0.2.1 dated 2026-07-24 and 0.2.2 dated 2026-07-28
BsplineQuantReg-0.2.1/BsplineQuantReg/demo/monotonicity.R |only BsplineQuantReg-0.2.1/BsplineQuantReg/man/print.quantile_spline.Rd |only BsplineQuantReg-0.2.2/BsplineQuantReg/DESCRIPTION | 11 BsplineQuantReg-0.2.2/BsplineQuantReg/MD5 | 100 +-- BsplineQuantReg-0.2.2/BsplineQuantReg/NAMESPACE | 10 BsplineQuantReg-0.2.2/BsplineQuantReg/NEWS | 27 BsplineQuantReg-0.2.2/BsplineQuantReg/R/bspline-base.R | 318 ++++++++-- BsplineQuantReg-0.2.2/BsplineQuantReg/R/bspline-eval.R | 313 +++++---- BsplineQuantReg-0.2.2/BsplineQuantReg/R/bspline_deriv.R |only BsplineQuantReg-0.2.2/BsplineQuantReg/R/constraints.R | 8 BsplineQuantReg-0.2.2/BsplineQuantReg/R/cubic-regression.R | 14 BsplineQuantReg-0.2.2/BsplineQuantReg/R/imports.R | 2 BsplineQuantReg-0.2.2/BsplineQuantReg/R/linear-regression.R | 6 BsplineQuantReg-0.2.2/BsplineQuantReg/R/polynomial-utils.R | 8 BsplineQuantReg-0.2.2/BsplineQuantReg/R/quadratic-regression.R | 27 BsplineQuantReg-0.2.2/BsplineQuantReg/R/quantile-regression.R | 37 - BsplineQuantReg-0.2.2/BsplineQuantReg/R/quartic-regression.R | 12 BsplineQuantReg-0.2.2/BsplineQuantReg/R/test_bsqr.R |only BsplineQuantReg-0.2.2/BsplineQuantReg/README.md | 17 BsplineQuantReg-0.2.2/BsplineQuantReg/demo/00Index | 17 BsplineQuantReg-0.2.2/BsplineQuantReg/demo/comprehensive.R | 35 - BsplineQuantReg-0.2.2/BsplineQuantReg/demo/convexity.R | 20 BsplineQuantReg-0.2.2/BsplineQuantReg/demo/degrees_comparison.R | 155 ++-- BsplineQuantReg-0.2.2/BsplineQuantReg/demo/demo_der3.R | 61 - BsplineQuantReg-0.2.2/BsplineQuantReg/demo/derivative2.R |only BsplineQuantReg-0.2.2/BsplineQuantReg/demo/logistic.R | 16 BsplineQuantReg-0.2.2/BsplineQuantReg/demo/monotonicity_basic.R |only BsplineQuantReg-0.2.2/BsplineQuantReg/demo/temperature.R | 8 BsplineQuantReg-0.2.2/BsplineQuantReg/demo/temperature2.R | 8 BsplineQuantReg-0.2.2/BsplineQuantReg/inst/References.bib | 4 BsplineQuantReg-0.2.2/BsplineQuantReg/man/Bspline_base.Rd | 16 BsplineQuantReg-0.2.2/BsplineQuantReg/man/Bspline_base_deriv.Rd |only BsplineQuantReg-0.2.2/BsplineQuantReg/man/Bspline_deriv.Rd | 22 BsplineQuantReg-0.2.2/BsplineQuantReg/man/Bsplinetopp.Rd |only BsplineQuantReg-0.2.2/BsplineQuantReg/man/SplineConstQuantRegBs1.Rd | 2 BsplineQuantReg-0.2.2/BsplineQuantReg/man/SplineConstQuantRegBs2.Rd | 10 BsplineQuantReg-0.2.2/BsplineQuantReg/man/SplineConstQuantRegBs3.Rd | 4 BsplineQuantReg-0.2.2/BsplineQuantReg/man/SplineConstQuantRegBs4.Rd | 2 BsplineQuantReg-0.2.2/BsplineQuantReg/man/SplineCubicQuant.Rd | 12 BsplineQuantReg-0.2.2/BsplineQuantReg/man/SplineLinearQuant.Rd | 2 BsplineQuantReg-0.2.2/BsplineQuantReg/man/SplineQuadraticQuant.Rd | 10 BsplineQuantReg-0.2.2/BsplineQuantReg/man/SplineQuarticQuant.Rd | 2 BsplineQuantReg-0.2.2/BsplineQuantReg/man/apply_karlin_cubic.Rd | 4 BsplineQuantReg-0.2.2/BsplineQuantReg/man/apply_karlin_quadratic.Rd | 2 BsplineQuantReg-0.2.2/BsplineQuantReg/man/apply_linear_constraint.Rd | 2 BsplineQuantReg-0.2.2/BsplineQuantReg/man/bs_direct.Rd | 2 BsplineQuantReg-0.2.2/BsplineQuantReg/man/get_parameters.Rd | 8 BsplineQuantReg-0.2.2/BsplineQuantReg/man/make_spline.Rd | 22 BsplineQuantReg-0.2.2/BsplineQuantReg/man/makpp.Rd | 16 BsplineQuantReg-0.2.2/BsplineQuantReg/man/print.callable_pp.Rd |only BsplineQuantReg-0.2.2/BsplineQuantReg/man/print.callable_spline.Rd | 2 BsplineQuantReg-0.2.2/BsplineQuantReg/man/print.non_callable_pp.Rd |only BsplineQuantReg-0.2.2/BsplineQuantReg/man/print.non_callable_spline.Rd |only BsplineQuantReg-0.2.2/BsplineQuantReg/man/quantile_spline.Rd | 8 BsplineQuantReg-0.2.2/BsplineQuantReg/man/reduce_pol.Rd | 4 BsplineQuantReg-0.2.2/BsplineQuantReg/man/spline_eval.Rd | 16 BsplineQuantReg-0.2.2/BsplineQuantReg/man/test_karlin_simple.Rd |only 57 files changed, 873 insertions(+), 529 deletions(-)
More information about BsplineQuantReg at CRAN
Permanent link
Title: Bayesian Reliability Estimation
Description: Functionality for reliability estimates. For 'unidimensional' tests:
Coefficient alpha, 'Guttman's' lambda-2/-4/-6, the Greatest lower
bound and coefficient omega_u ('unidimensional') in a Bayesian and a frequentist version.
For multidimensional tests: omega_t (total) and omega_h (hierarchical).
The results include confidence and credible intervals, the
probability of a coefficient being larger than a cutoff,
and a check for the factor models, necessary for the omega coefficients.
The method for the Bayesian 'unidimensional' estimates, except for omega_u,
is sampling from the posterior inverse 'Wishart' for the
covariance matrix based measures (see 'Murphy', 2007,
<https://groups.seas.harvard.edu/courses/cs281/papers/murphy-2007.pdf>).
The Bayesian omegas (u, t, and h) are obtained by
'Gibbs' sampling from the conditional posterior distributions of
(1) the single factor model, (2) the second-order factor model, (3) the bi-factor model,
(4) the correlated factor model
('Lee', 2007 [...truncated...]
Author: Julius M. Pfadt [aut, cre] ,
Don van den Bergh [aut] ,
Joris Goosen [aut]
Maintainer: Julius M. Pfadt <julius.pfadt@gmail.com>
Diff between Bayesrel versions 0.7.8 dated 2025-03-24 and 0.7.9 dated 2026-07-28
DESCRIPTION | 20 +++++++++++--------- MD5 | 9 +++++---- NEWS.md |only R/bomegasMultiGibbs.R | 9 ++++++++- build/partial.rdb |binary inst/tinytest/test_strel.R | 4 ++-- 6 files changed, 26 insertions(+), 16 deletions(-)
Title: Tree-Spatial Scan Statistic for Cluster Detection
Description: Implements the tree-spatial scan statistic for detecting clusters
that combine both spatial and hierarchical structures, as proposed by
Cancado et al. (2025) <doi:10.1007/s10651-025-00670-w>. The method extends
Kulldorff (1997) <doi:10.1080/03610929708831995> circular spatial scan
statistic and the tree-based scan statistic of Kulldorff et al. (2003)
<doi:10.1111/1541-0420.00039> by searching for anomalies in both
geographic regions and branches of hierarchical trees simultaneously. The
package also provides standalone implementations of Kulldorff's circular
spatial scan statistic and the tree-based scan statistic. Statistical
significance is assessed via Monte Carlo simulation under a Poisson or
binomial model, with optional 'OpenMP' parallelization.
Author: Allan Quadros [aut, cre] ,
Andre L. F. Cancado [aut]
Maintainer: Allan Quadros <allanvcq@gmail.com>
Diff between treeSS versions 0.2.5 dated 2026-07-11 and 0.2.6 dated 2026-07-28
DESCRIPTION | 14 +++++--------- MD5 | 6 +++--- NEWS.md | 6 ++++++ man/treeSS-package.Rd | 2 -- 4 files changed, 14 insertions(+), 14 deletions(-)
Title: GCC Estimation of the Multilevel Factor Model
Description: Provides methods for model selection, estimation, inference, and simulation for the
multilevel factor model, based on the principal component estimation and generalised
canonical correlation approach. Details can be found in "Generalised Canonical Correlation
Estimation of the Multilevel Factor Model." Lin and Shin (2025) <doi:10.2139/ssrn.4295429>.
Author: Rui Lin [aut, cre],
Yongcheol Shin [aut]
Maintainer: Rui Lin <ruilin1081@gmail.com>
Diff between GCCfactor versions 1.2.0 dated 2026-07-27 and 1.2.1 dated 2026-07-28
DESCRIPTION | 6 MD5 | 6 NAMESPACE | 2 R/utility_functions.R | 387 +++++++++++++++++++++++++------------------------- 4 files changed, 201 insertions(+), 200 deletions(-)
Title: Contextualizing Tests
Description: Dissects a package environment or 'covr' coverage object in order to cross
reference tested code with the lines that are evaluated, as well as linking
those evaluated lines to the documentation that they are described within.
Connecting these three pieces of information provides a mechanism of
linking tests to documented behaviors.
Author: Doug Kelkhoff [aut] ,
Szymon Maksymiuk [aut, cre] ,
Andrew McNeil [aut],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Szymon Maksymiuk <sz.maksymiuk@gmail.com>
Diff between covtracer versions 0.0.2 dated 2026-01-30 and 0.0.3 dated 2026-07-28
DESCRIPTION | 8 +- MD5 | 73 +++++++++++++------------ NAMESPACE | 4 + NEWS.md | 5 + R/Rd_df.R | 31 +++++++++- R/getSrcFilepath.R | 5 + R/list_of_srcref.R | 15 ++++- R/obj_namespace_name.R | 2 R/pseudo_srcref.R | 6 +- R/srcref_df.R | 17 +++-- R/srcrefs.R | 29 ++++++++- R/test_description.R | 6 +- R/test_trace_df.R | 10 ++- R/traceability.R |only R/utils.R | 2 build/vignette.rds |binary inst/doc/combining_srcref_data.html | 59 ++++++++++---------- inst/doc/plotting_test_paths.html | 7 +- inst/doc/working_with_srcrefs.html | 21 +++---- man/coverage_check_has_recorded_tests.Rd | 6 +- man/coverage_get_tests.Rd | 6 +- man/coverage_has_recorded_tests.Rd | 6 +- man/pkg_srcrefs.Rd | 6 +- man/pkg_srcrefs_df.Rd | 6 +- man/srcref_namespace.Rd |only man/test_srcrefs.Rd | 6 +- man/test_srcrefs_df.Rd | 6 +- man/trace_srcrefs.Rd | 6 +- man/trace_srcrefs_df.Rd | 6 +- tests/testthat/test_Rd_df.R | 32 ++++++++++ tests/testthat/test_case_list_obj.R | 10 +++ tests/testthat/test_case_no_evaluable_code.R | 2 tests/testthat/test_case_no_exports.R | 2 tests/testthat/test_match_containing_srcrefs.R | 13 ++-- tests/testthat/test_srcrefs.R | 18 ++++-- tests/testthat/test_test_description.R | 58 ++++++++++++++----- tests/testthat/test_test_trace_df.R | 4 + tests/testthat/test_trace_mapping.R | 4 + tests/testthat/test_traceability.R |only 39 files changed, 330 insertions(+), 167 deletions(-)
Title: Camera Trap Data Management and Analysis Framework
Description: Management and analysis of camera trap wildlife data through
an integrated workflow. Provides functions for image/video
organization and metadata extraction, species/individual
identification. Creates detection histories for occupancy and spatial
capture-recapture analyses, with support for multi-season studies.
Includes tools for fitting community occupancy models in JAGS and
NIMBLE, and an interactive dashboard for survey data visualization and
analysis. Features visualization of species distributions and activity
patterns, plus export capabilities for GIS and reports. Emphasizes
automation and reproducibility while maintaining flexibility for
different study designs.
Author: Juergen Niedballa [aut, cre] ,
Alexandre Courtiol [aut] ,
Rahel Sollmann [aut] ,
John Mathai [ctb],
Seth Timothy Wong [ctb] ,
An The Truong Nguyen [ctb] ,
Azlan bin Mohamed [ctb] ,
Andrew Tilker [ctb] ,
Roshan Guharajan [ctb] ,
Ioannis Alexiou [ctb] [...truncated...]
Maintainer: Juergen Niedballa <camtrapr@gmail.com>
Diff between camtrapR versions 3.0.4 dated 2026-04-30 and 3.1.0 dated 2026-07-28
camtrapR-3.0.4/camtrapR/R/readcamtrapDP.R |only camtrapR-3.0.4/camtrapR/inst/pictures/full_size_for_ocr/StationA/mousedeer_detections.jpg |only camtrapR-3.0.4/camtrapR/man/readcamtrapDP.Rd |only camtrapR-3.0.4/camtrapR/tests/testthat/fixtures/sample_camtrap_dp_data/tdwg_camtrap-dp_1.0.2_example.zip |only camtrapR-3.0.4/camtrapR/tests/testthat/test-readcamtrapDP.R |only camtrapR-3.1.0/camtrapR/DESCRIPTION | 32 camtrapR-3.1.0/camtrapR/MD5 | 169 camtrapR-3.1.0/camtrapR/NAMESPACE | 35 camtrapR-3.1.0/camtrapR/NEWS.md | 70 camtrapR-3.1.0/camtrapR/R/aaa_classes.r |only camtrapR-3.1.0/camtrapR/R/aggregateStations.R | 37 camtrapR-3.1.0/camtrapR/R/cameraOperation.R | 44 camtrapR-3.1.0/camtrapR/R/camtrapR-package.R | 294 camtrapR-3.1.0/camtrapR/R/communityModel.R | 254 camtrapR-3.1.0/camtrapR/R/createCovariates.R | 57 camtrapR-3.1.0/camtrapR/R/data.R |only camtrapR-3.1.0/camtrapR/R/detectionHistory.R | 55 camtrapR-3.1.0/camtrapR/R/filterRecordTable.R | 10 camtrapR-3.1.0/camtrapR/R/plot.R | 15 camtrapR-3.1.0/camtrapR/R/predict.R | 1 camtrapR-3.1.0/camtrapR/R/readCamtrapDP.R |only camtrapR-3.1.0/camtrapR/R/readWildlifeInsights.R | 32 camtrapR-3.1.0/camtrapR/R/recordTable.R | 15 camtrapR-3.1.0/camtrapR/R/recordTableIndividual.R | 15 camtrapR-3.1.0/camtrapR/R/simulateCamtrapData.R |only camtrapR-3.1.0/camtrapR/R/surveyDashboard.R | 3226 ++++++---- camtrapR-3.1.0/camtrapR/R/variousOtherHelperFunctions.R | 167 camtrapR-3.1.0/camtrapR/README.md | 126 camtrapR-3.1.0/camtrapR/build/vignette.rds |binary camtrapR-3.1.0/camtrapR/data/camtraps.rda |binary camtrapR-3.1.0/camtrapR/data/camtrapsMultiSeason.rda |binary camtrapR-3.1.0/camtrapR/data/recordTableIndividualSample.rda |binary camtrapR-3.1.0/camtrapR/data/recordTableIndividualSampleMultiSeason.rda |binary camtrapR-3.1.0/camtrapR/data/recordTableSample.rda |binary camtrapR-3.1.0/camtrapR/data/recordTableSampleMultiSeason.rda |binary camtrapR-3.1.0/camtrapR/inst/dashboard_help/communityModels_help.html | 38 camtrapR-3.1.0/camtrapR/inst/dashboard_help/covariateExtraction_help.html | 3 camtrapR-3.1.0/camtrapR/inst/dashboard_help/csv_upload_help.html |only camtrapR-3.1.0/camtrapR/inst/dashboard_help/detectionHistories_help.html | 6 camtrapR-3.1.0/camtrapR/inst/dashboard_help/goodnessOfFit_help.html | 5 camtrapR-3.1.0/camtrapR/inst/dashboard_help/singleSpeciesOccupancy_help.html | 6 camtrapR-3.1.0/camtrapR/inst/dashboard_help/speciesAccum_help.html | 4 camtrapR-3.1.0/camtrapR/inst/doc/camtrapr1.pdf |binary camtrapR-3.1.0/camtrapR/inst/doc/camtrapr2.pdf |binary camtrapR-3.1.0/camtrapR/inst/doc/camtrapr3.pdf |binary camtrapR-3.1.0/camtrapR/inst/doc/camtrapr4.pdf |binary camtrapR-3.1.0/camtrapR/inst/doc/camtrapr5.html | 3220 +++------ camtrapR-3.1.0/camtrapR/inst/doc/camtrapr5.html.asis | 2 camtrapR-3.1.0/camtrapR/inst/doc/camtrapr6.html |only camtrapR-3.1.0/camtrapR/inst/doc/camtrapr6.html.asis |only camtrapR-3.1.0/camtrapR/inst/sample_data |only camtrapR-3.1.0/camtrapR/man/cameraOperation.Rd | 15 camtrapR-3.1.0/camtrapR/man/camtrapR-package.Rd | 198 camtrapR-3.1.0/camtrapR/man/camtraps.Rd | 27 camtrapR-3.1.0/camtrapR/man/camtrapsMultiSeason.Rd | 67 camtrapR-3.1.0/camtrapR/man/communityModel.Rd | 8 camtrapR-3.1.0/camtrapR/man/createCovariates.Rd | 38 camtrapR-3.1.0/camtrapR/man/detectionHistory.Rd | 10 camtrapR-3.1.0/camtrapR/man/dplyr_reconstruct.records.Rd |only camtrapR-3.1.0/camtrapR/man/filterRecordTable.Rd | 5 camtrapR-3.1.0/camtrapR/man/fit-commOccu-method.Rd | 2 camtrapR-3.1.0/camtrapR/man/plot.camOp.Rd |only camtrapR-3.1.0/camtrapR/man/plot_coef-commOccu-method.Rd | 2 camtrapR-3.1.0/camtrapR/man/print.camOp.Rd |only camtrapR-3.1.0/camtrapR/man/print.cams.Rd |only camtrapR-3.1.0/camtrapR/man/print.cams_dp.Rd |only camtrapR-3.1.0/camtrapR/man/print.detHist.Rd |only camtrapR-3.1.0/camtrapR/man/print.records.Rd |only camtrapR-3.1.0/camtrapR/man/readCamtrapDP.Rd |only camtrapR-3.1.0/camtrapR/man/readWildlifeInsights.Rd | 10 camtrapR-3.1.0/camtrapR/man/recordTable.Rd | 8 camtrapR-3.1.0/camtrapR/man/recordTableIndividual.Rd | 6 camtrapR-3.1.0/camtrapR/man/recordTableIndividualSample.Rd | 18 camtrapR-3.1.0/camtrapR/man/recordTableIndividualSampleMultiSeason.Rd | 31 camtrapR-3.1.0/camtrapR/man/recordTableSample.Rd | 15 camtrapR-3.1.0/camtrapR/man/recordTableSampleMultiSeason.Rd | 39 camtrapR-3.1.0/camtrapR/man/simulateCamtrapData.Rd |only camtrapR-3.1.0/camtrapR/man/sub-.camOp.Rd |only camtrapR-3.1.0/camtrapR/man/sub-.detHist.Rd |only camtrapR-3.1.0/camtrapR/man/sub-.records.Rd |only camtrapR-3.1.0/camtrapR/man/summary.camOp.Rd |only camtrapR-3.1.0/camtrapR/man/summary.records.Rd |only camtrapR-3.1.0/camtrapR/man/surveyDashboard.Rd | 17 camtrapR-3.1.0/camtrapR/man/timeShiftTable.Rd | 13 camtrapR-3.1.0/camtrapR/tests/testthat/Rplots.pdf |only camtrapR-3.1.0/camtrapR/tests/testthat/apps |only camtrapR-3.1.0/camtrapR/tests/testthat/fixtures/sample_camtrap_dp_data/datapackage_no_vernacularNames.json |only camtrapR-3.1.0/camtrapR/tests/testthat/test-app-surveyDashboard_builtin.R |only camtrapR-3.1.0/camtrapR/tests/testthat/test-app-surveyDashboard_camtrapdp.R |only camtrapR-3.1.0/camtrapR/tests/testthat/test-communityModels.R | 31 camtrapR-3.1.0/camtrapR/tests/testthat/test-readCamtrapDP.R |only camtrapR-3.1.0/camtrapR/tests/testthat/test-simulateCamtrapData.R |only camtrapR-3.1.0/camtrapR/tests/testthat/test-surveyDashboard.R | 218 camtrapR-3.1.0/camtrapR/tests/testthat/test-surveyReport.R | 30 camtrapR-3.1.0/camtrapR/tests/testthat/test-workflow_simulated_data.R |only camtrapR-3.1.0/camtrapR/tests/testthat/test_createCovariates.R | 7 camtrapR-3.1.0/camtrapR/tests/testthat/test_detectionHistory.R | 3 camtrapR-3.1.0/camtrapR/tests/testthat/test_recordTable.R | 24 camtrapR-3.1.0/camtrapR/vignettes/camtrapr5.html.asis | 2 camtrapR-3.1.0/camtrapR/vignettes/camtrapr6.html.asis |only 100 files changed, 4568 insertions(+), 4214 deletions(-)
Title: Korean National Assembly Data for Political Science Education
Description: Provides ready-to-use datasets from the Korean National Assembly
(assemblies 20 through 22, 2016-2026) for teaching quantitative methods in
political science. Includes legislator metadata, bill proposals, roll call
votes, asset declarations, and policy seminar records. Designed as a Korean
politics counterpart to packages like 'palmerpenguins', enabling students to
practice regression, panel data analysis, text analysis, and network analysis
with real legislative data. Roll call vote data and spatial voting models are
described in Poole and Rosenthal (1985) <doi:10.2307/2111172>. Legislative
data is sourced from the Korean National Assembly Open API.
Author: Kyusik Yang [aut, cre]
Maintainer: Kyusik Yang <kyusik.yang@nyu.edu>
Diff between assemblykor versions 0.1.2 dated 2026-04-15 and 0.1.3 dated 2026-07-28
DESCRIPTION | 6 MD5 | 53 ++-- NAMESPACE | 1 NEWS.md | 34 ++ R/data.R | 21 - R/download.R | 124 +++++++++ R/zzz.R | 14 - README.md | 15 - inst/CITATION | 2 inst/cheatsheet/assemblykor-cheatsheet.Rmd | 6 inst/doc/codebook.Rmd | 4 inst/doc/codebook.html | 4 inst/doc/introduction.html | 16 - inst/doc/quickstart.html | 4 inst/rmd-tutorials/04-panel-data.Rmd | 7 inst/rmd-tutorials/05-text-analysis.Rmd | 128 +++++++++- inst/shinyapps/04-panel-data/04-panel-data.Rmd | 7 inst/shinyapps/05-text-analysis/05-text-analysis.Rmd | 128 +++++++++- inst/shinyapps/assemblykor-tutorials/assemblykor-tutorials.Rmd | 68 ++++- inst/tutorials/04-panel-data/04-panel-data.Rmd | 7 inst/tutorials/05-text-analysis/05-text-analysis.Rmd | 72 +++++ man/assemblykor-package.Rd | 7 man/get_bill_texts.Rd | 3 man/get_proposers.Rd | 3 man/get_speech_tokens.Rd |only man/seminars.Rd | 6 man/wealth.Rd | 8 vignettes/codebook.Rmd | 4 28 files changed, 636 insertions(+), 116 deletions(-)
Title: Word and Document Vector Models
Description: Create dense vector representation of words and documents using 'quanteda'. Implements Word2vec (Mikolov et al., 2013) <doi:10.48550/arXiv.1310.4546>, Doc2vec (Le & Mikolov, 2014) <doi:10.48550/arXiv.1405.4053> and Latent Semantic Analysis (Deerwester et al., 1990) <doi:10.1002/(SICI)1097-4571(199009)41:6%3C391::AID-ASI1%3E3.0.CO;2-9>.
Author: Kohei Watanabe [aut, cre, cph] ,
Jan Wijffels [aut] ,
BNOSAC [cph] ,
Max Fomichev [ctb, cph]
Maintainer: Kohei Watanabe <watanabe.kohei@gmail.com>
Diff between wordvector versions 0.6.2 dated 2026-04-06 and 0.6.3 dated 2026-07-28
DESCRIPTION | 13 +++-- MD5 | 28 ++++++------ NEWS.md | 5 ++ R/word2vec.R | 13 +++++ man/as.matrix.Rd | 4 + src/word2vec/trainThread.cpp | 90 ++++++++++++++++++++--------------------- src/word2vec/trainThread.hpp | 16 +++---- src/word2vec/word2vec.cpp | 10 ++-- src/word2vec/word2vec.hpp | 14 +++--- src/wordvector.cpp | 2 tests/misc/test_large.R | 13 +---- tests/misc/test_small.R | 19 ++++---- tests/spelling.R | 6 +- tests/testthat/test-utils.R | 7 +++ tests/testthat/test-word2vec.R | 8 ++- 15 files changed, 134 insertions(+), 114 deletions(-)
Title: MCMC Sampling from 'TMB' Model Object using 'Stan'
Description: Enables all 'rstan' functionality for a 'TMB' model object, in particular MCMC sampling and chain visualization. Sampling can be performed with or without Laplace approximation for the random effects. This is demonstrated in Monnahan & Kristensen (2018) <DOI:10.1371/journal.pone.0197954>.
Author: Kasper Kristensen [aut, cre]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>
Diff between tmbstan versions 1.1.0 dated 2026-03-20 and 1.2.0 dated 2026-07-28
tmbstan-1.1.0/tmbstan/inst/model226.stan |only tmbstan-1.2.0/tmbstan/DESCRIPTION | 11 ++-- tmbstan-1.2.0/tmbstan/MD5 | 16 ++++- tmbstan-1.2.0/tmbstan/NEWS | 7 ++ tmbstan-1.2.0/tmbstan/build |only tmbstan-1.2.0/tmbstan/inst/doc |only tmbstan-1.2.0/tmbstan/inst/model.hpp |only tmbstan-1.2.0/tmbstan/inst/model.stan | 15 ++++- tmbstan-1.2.0/tmbstan/src/include/model.hpp |only tmbstan-1.2.0/tmbstan/tools/autogen.R | 77 +--------------------------- tmbstan-1.2.0/tmbstan/vignettes |only 11 files changed, 42 insertions(+), 84 deletions(-)
Title: Analysis Tools for 'PsyToolkit'
Description: Analyses and reports questionnaire and experiment data exported from 'PsyToolkit'. The package reads downloaded study folders, parses questionnaire structure, optionally merges demographic exports from CloudResearch or Prolific, and produces summary overviews of responses and completion times. It also provides helper functions to extract and aggregate experiment measures and survey variables, and to export results to spreadsheet files for further analysis and archiving. See Stoet (2017) <doi:10.1177/0098628316677643> for the 'PsyToolkit' platform.
Author: Gijsbert Stoet [cre, aut]
Maintainer: Gijsbert Stoet <stoet@gmx.co.uk>
Diff between PsyToolkit versions 1.1.4 dated 2026-03-07 and 1.1.6 dated 2026-07-28
DESCRIPTION | 10 +-- MD5 | 21 +++--- NAMESPACE | 3 R/psytkExport.r | 57 ++++++++++++++---- R/psytkParseSurvey.r | 10 ++- R/psytkReadData.r | 146 ++++++++++++++++++++++++++++++++++++++++-------- R/psytkReport.r | 24 ++++--- R/psytkUtils.r | 100 +++++++++++++++++++++++++++++--- man/lst.Rd |only man/psytkExpDiagnose.Rd |only man/psytkExport.Rd | 9 +- man/psytkExtractCall.Rd |only man/psytkReadData.Rd | 4 - 13 files changed, 308 insertions(+), 76 deletions(-)
Title: Hexagonal Binning Routines
Description: Binning and plotting functions for hexagonal bins.
Author: Dan Carr [aut],
Nicholas Lewin-Koh [aut],
Martin Maechler [aut],
Deepayan Sarkar [aut],
Edzer Pebesma [cre]
Maintainer: Edzer Pebesma <edzer.pebesma@uni-muenster.de>
Diff between hexbin versions 1.28.5 dated 2024-11-13 and 1.28.6 dated 2026-07-28
DESCRIPTION | 8 - MD5 | 16 +- build/vignette.rds |binary inst/doc/hexagon_binning.R | 2 inst/doc/hexagon_binning.pdf |binary man/plotMAhex.Rd | 2 src/hbin.f | 8 - src/hcell.f | 8 - tests/hdiffplot.Rout.save | 322 +++++++++++++++++++++---------------------- 9 files changed, 182 insertions(+), 184 deletions(-)
Title: Generate Random Tree-Like Images
Description: A generative art system for producing tree-like
images using a stochastic branching process to create the
structures. The package includes tools for generating the data
structures and visualising them in a variety of styles.
Author: Danielle Navarro [aut, cre, cph]
Maintainer: Danielle Navarro <djnavarro@protonmail.com>
Diff between flametree versions 0.1.3 dated 2021-11-29 and 0.2.0 dated 2026-07-28
DESCRIPTION | 30 +++++---- MD5 | 36 +++++------ NEWS.md | 39 +++++++++++- R/checks.R | 46 +++++++++++++- R/grow.R | 124 ++++++++++++++++++++++++++------------- R/plot.R | 77 ++++++++++++++---------- R/save.R | 21 ++---- R/sparks.R | 11 +-- R/zzz.R | 3 README.md | 7 +- inst |only man/figures/README-example-1.png |binary man/flametree_grow.Rd | 47 +++++++++++--- man/flametree_plot.Rd | 17 ++--- man/flametree_save.Rd | 17 +---- man/sparks.Rd | 11 +-- tests/spelling.R |only tests/testthat/test-checks.R | 52 ++++++++++++++++ tests/testthat/test-grow.R | 78 ++++++++++++++++++++++++ tests/testthat/test-save.R | 15 ++++ 20 files changed, 472 insertions(+), 159 deletions(-)
Title: A Wrap Around the 'DistillerSR' APIs
Description: Interface to 'DistillerSR' APIs. See
<https://apidocs.evidencepartners.com/> for more details.
Author: Lorenzo Copelli [aut] ,
Fulvio Barizzone [aut] ,
Dayana Stephanie Buzle [aut] ,
Rafael Vieira [aut] ,
Luca Belmonte [aut, cre]
Maintainer: Luca Belmonte <luca.belmonte@efsa.europa.eu>
Diff between distilleR versions 1.0.0 dated 2026-04-23 and 1.1.0 dated 2026-07-28
DESCRIPTION | 8 +-- MD5 | 51 ++++++++++++++----------- NAMESPACE | 4 + R/buildAuthenticationRequest.R | 4 - R/buildServiceRequest.R | 27 ++++++------- R/getAsyncReportResult.R |only R/getAsyncReportStatus.R |only R/getAuthenticationToken.R | 12 ++--- R/getProjects.R | 13 +++--- R/getReport.R | 18 ++++---- R/getReportAsync.R |only R/getReports.R | 8 ++- R/handleHTTPErrors.R | 19 ++++++--- R/parseCSVResponse.R | 8 +-- R/parseJSONResponse.R | 4 - R/parseXLSXResponse.R | 4 - R/performRequest.R | 4 - inst/doc/distilleR.R | 36 +++++++++++++++++ inst/doc/distilleR.Rmd | 59 +++++++++++++++++++++++++++-- inst/doc/distilleR.html | 57 ++++++++++++++++++++++++++-- man/getAsyncReportResult.Rd |only man/getAsyncReportStatus.Rd |only man/getAuthenticationToken.Rd | 12 ++--- man/getProjects.Rd | 7 +-- man/getReport.Rd | 15 +++---- man/getReportAsync.Rd |only man/getReports.Rd | 7 +-- tests/testthat/test-getAsyncReportResult.R |only tests/testthat/test-getAsyncReportStatus.R |only tests/testthat/test-getReportAsync.R |only vignettes/distilleR.Rmd | 59 +++++++++++++++++++++++++++-- 31 files changed, 329 insertions(+), 107 deletions(-)
Title: Web-Based Interactive Omics Visualization
Description: Tool-set of modules for creating web-based applications that use plot based strategies to visualize and analyze multi-omics data.
This package utilizes the 'shiny' and 'plotly' frameworks to provide a user friendly dashboard for interactive plotting.
Author: Hendrik Schultheis [aut, cre],
Jens Preussner [aut],
Looso Mario [aut]
Maintainer: Hendrik Schultheis <hendrik.schultheis@mpi-bn.mpg.de>
This is a re-admission after prior archival of version 2.4.2 dated 2021-04-19
Diff between wilson versions 2.4.2 dated 2021-04-19 and 2.4.4 dated 2026-07-28
DESCRIPTION | 12 - MD5 | 39 +-- NAMESPACE | 1 NEWS.md | 7 R/clarion.R | 22 + R/function.R | 55 ++-- R/global.R | 52 +++- R/installer.R | 7 R/parser.R | 2 R/zzz.R | 2 README.md | 6 build/vignette.rds |binary inst/doc/intro.html | 261 ++++++++++++++++++++-- man/Clarion.Rd | 475 +++++++++++++++++++++-------------------- man/create_logger.Rd |only man/install_app.Rd | 4 man/log_message.Rd | 4 man/parse_MaxQuant.Rd | 2 man/set_logger.Rd | 42 +-- tests/testthat/test-logging.R | 13 - tests/testthat/test_mqparser.R | 20 + 21 files changed, 679 insertions(+), 347 deletions(-)
Title: Bayesian Vector Autoregressions with Steady-State Priors
Description: Provides estimation of Bayesian vector autoregression
(BVAR) models with steady-state priors via 'Stan', along with
functions for unconditional and conditional forecasting, as well as impulse
response analysis. For details on the steady-state BVAR model
see Villani (2009) <doi:10.1002/jae.1065>.
Author: Mark Becker [aut, cre, cph]
Maintainer: Mark Becker <mark.jw.becker@gmail.com>
Diff between SteadyStateBVAR versions 0.1.0 dated 2026-07-24 and 0.1.1 dated 2026-07-28
DESCRIPTION | 6 MD5 | 96 - NAMESPACE | 1 NEWS.md | 8 R/SteadyStateBVAR-package.R | 2 R/bvar.R | 9 R/forecast.R | 41 R/priors.R | 4 README.md | 22 inst/doc/AR1-stochastic-volatility-steady-state-BVAR.Rmd | 232 ++-- inst/doc/AR1-stochastic-volatility-steady-state-BVAR.html | 244 ++-- inst/doc/Homoscedastic-steady-state-BVAR.Rmd | 240 ++-- inst/doc/Homoscedastic-steady-state-BVAR.html | 255 ++-- inst/doc/RW-stochastic-volatility-steady-state-BVAR.Rmd | 228 ++-- inst/doc/RW-stochastic-volatility-steady-state-BVAR.html | 236 ++-- inst/stan/steady_state_bvar_AR1_stochastic_volatility.stan | 6 inst/stan/steady_state_bvar_RW_stochastic_volatility.stan | 6 inst/stan/steady_state_bvar_homoscedastic_inverse_wishart_prior.stan | 2 inst/stan/steady_state_bvar_homoscedastic_jeffreys_prior.stan | 2 man/IRF.Rd | 180 +-- man/KoopKorobilis2010.Rd | 56 - man/SteadyStateBVAR-package.Rd | 58 - man/Villani2009.Rd | 66 - man/bvar.Rd | 201 +-- man/conditional_forecast.Rd | 198 +-- man/fit.Rd | 458 ++++---- man/forecast.Rd | 162 +-- man/ppi.Rd | 96 - man/priors.Rd | 536 +++++----- man/restrict_beta.Rd | 124 +- man/setup.Rd | 80 - man/stochastic_volatility_plot.Rd | 218 ++-- man/summary.bvar.Rd | 148 +- src/stanExports_steady_state_bvar_AR1_stochastic_volatility.h | 22 src/stanExports_steady_state_bvar_RW_stochastic_volatility.h | 22 src/stanExports_steady_state_bvar_homoscedastic_inverse_wishart_prior.h | 6 src/stanExports_steady_state_bvar_homoscedastic_jeffreys_prior.h | 6 vignettes/AR1-stochastic-volatility-steady-state-BVAR.Rmd | 232 ++-- vignettes/AR1-stochastic-volatility-steady-state-BVAR.Rmd.orig | 6 vignettes/Homoscedastic-steady-state-BVAR.Rmd | 240 ++-- vignettes/Homoscedastic-steady-state-BVAR.Rmd.orig | 2 vignettes/RW-stochastic-volatility-steady-state-BVAR.Rmd | 228 ++-- vignettes/RW-stochastic-volatility-steady-state-BVAR.Rmd.orig | 4 vignettes/precompile.R | 16 vignettes/vignettes |only 45 files changed, 2515 insertions(+), 2490 deletions(-)
More information about SteadyStateBVAR at CRAN
Permanent link
Title: (Standardised) Major Axis Estimation and Testing Routines
Description: Methods for fitting bivariate lines in
allometry using the major axis (MA) or standardised major axis (SMA), and
for making inferences about such lines. The available methods of inference
include confidence intervals and one-sample tests for slope and elevation,
testing for a common slope or elevation amongst several allometric lines,
constructing a confidence interval for a common slope or elevation, and
testing for no shift along a common axis, amongst several samples.
See Warton et al. 2012 <doi:10.1111/j.2041-210X.2011.00153.x> for methods description.
Author: David Warton [aut],
Remko Duursma [aut],
Daniel Falster [aut, cre] ,
Sara Taskinen [aut],
Fonti Kar [aut]
Maintainer: Daniel Falster <daniel.falster@unsw.edu.au>
Diff between smatr versions 3.4-8 dated 2018-03-18 and 3.5-1 dated 2026-07-28
smatr-3.4-8/smatr/R/logLik_sma.R |only smatr-3.4-8/smatr/man/com.ci.Rd |only smatr-3.4-8/smatr/man/nicePlot.Rd |only smatr-3.5-1/smatr/DESCRIPTION | 49 + smatr-3.5-1/smatr/MD5 | 147 ++-- smatr-3.5-1/smatr/NAMESPACE | 93 +- smatr-3.5-1/smatr/NEWS.md |only smatr-3.5-1/smatr/R/alpha.fun.R | 41 - smatr-3.5-1/smatr/R/b.com.est.R | 153 ++-- smatr-3.5-1/smatr/R/coef.sma.R | 43 - smatr-3.5-1/smatr/R/com.ci.R | 107 +-- smatr-3.5-1/smatr/R/confint.sma.R |only smatr-3.5-1/smatr/R/defineAxis.R | 63 + smatr-3.5-1/smatr/R/elev.com.R | 278 +++++-- smatr-3.5-1/smatr/R/elev.test.R | 228 ++++-- smatr-3.5-1/smatr/R/fitted.sma.R | 207 +++-- smatr-3.5-1/smatr/R/ggplot.sma.R |only smatr-3.5-1/smatr/R/huber.M.R | 102 +- smatr-3.5-1/smatr/R/leaflife.R |only smatr-3.5-1/smatr/R/leafmeas.R |only smatr-3.5-1/smatr/R/line.cis.R | 371 ++++++---- smatr-3.5-1/smatr/R/logLik.sma.R |only smatr-3.5-1/smatr/R/lr.b.com.R | 70 + smatr-3.5-1/smatr/R/ma.R | 10 smatr-3.5-1/smatr/R/makeLogMinor.R | 39 - smatr-3.5-1/smatr/R/meas.est.R | 148 ++-- smatr-3.5-1/smatr/R/multcompmatrix.R | 100 +- smatr-3.5-1/smatr/R/nicePlot.R | 116 +-- smatr-3.5-1/smatr/R/plot.sma.R | 562 +++++++++------- smatr-3.5-1/smatr/R/predict.sma.R | 13 smatr-3.5-1/smatr/R/print.sma.R | 329 ++++----- smatr-3.5-1/smatr/R/residuals.sma.R | 20 smatr-3.5-1/smatr/R/robust.factor.R | 108 +-- smatr-3.5-1/smatr/R/seqLog.R | 23 smatr-3.5-1/smatr/R/shift.com.R | 318 +++++---- smatr-3.5-1/smatr/R/slope.com.R | 498 +++++++++----- smatr-3.5-1/smatr/R/slope.test.R | 347 ++++++--- smatr-3.5-1/smatr/R/sma.R | 1121 ++++++++++++++++++-------------- smatr-3.5-1/smatr/R/smatr.R |only smatr-3.5-1/smatr/R/summary.sma.R | 20 smatr-3.5-1/smatr/R/utils.R |only smatr-3.5-1/smatr/README.md | 102 +- smatr-3.5-1/smatr/build |only smatr-3.5-1/smatr/inst/CITATION | 42 - smatr-3.5-1/smatr/inst/doc |only smatr-3.5-1/smatr/man/alpha.fun.Rd | 44 - smatr-3.5-1/smatr/man/b.com.est.Rd | 52 - smatr-3.5-1/smatr/man/coef.sma.Rd | 52 - smatr-3.5-1/smatr/man/confint.sma.Rd |only smatr-3.5-1/smatr/man/defineAxis.Rd |only smatr-3.5-1/smatr/man/elev.com.Rd | 215 +++--- smatr-3.5-1/smatr/man/elev.test.Rd | 203 +++-- smatr-3.5-1/smatr/man/figures |only smatr-3.5-1/smatr/man/fitted.sma.Rd | 77 +- smatr-3.5-1/smatr/man/gamma.fun.Rd |only smatr-3.5-1/smatr/man/get_coef.Rd |only smatr-3.5-1/smatr/man/ggplot.sma.Rd |only smatr-3.5-1/smatr/man/huber.M.Rd |only smatr-3.5-1/smatr/man/leaflife.Rd | 69 + smatr-3.5-1/smatr/man/leafmeas.Rd | 65 - smatr-3.5-1/smatr/man/line.cis.Rd | 216 +++--- smatr-3.5-1/smatr/man/lr.b.com.Rd | 41 - smatr-3.5-1/smatr/man/ma.Rd |only smatr-3.5-1/smatr/man/makeLogMinor.Rd | 61 - smatr-3.5-1/smatr/man/make_plot_data.Rd |only smatr-3.5-1/smatr/man/meas.est.Rd | 116 +-- smatr-3.5-1/smatr/man/multcompmatrix.Rd | 94 +- smatr-3.5-1/smatr/man/plot.sma.Rd | 251 ++++--- smatr-3.5-1/smatr/man/predict.sma.Rd |only smatr-3.5-1/smatr/man/print.sma.Rd | 45 - smatr-3.5-1/smatr/man/residuals.sma.Rd | 51 - smatr-3.5-1/smatr/man/robust.factor.Rd |only smatr-3.5-1/smatr/man/seqLog.Rd | 64 - smatr-3.5-1/smatr/man/shift.com.Rd | 232 +++--- smatr-3.5-1/smatr/man/slope.com.Rd | 299 +++++--- smatr-3.5-1/smatr/man/slope.test.Rd | 220 +++--- smatr-3.5-1/smatr/man/sma.Rd | 425 +++++++----- smatr-3.5-1/smatr/man/smatr-package.Rd | 151 ++-- smatr-3.5-1/smatr/man/summary.sma.Rd | 49 - smatr-3.5-1/smatr/tests |only smatr-3.5-1/smatr/vignettes |only 81 files changed, 5387 insertions(+), 3573 deletions(-)
Title: Facilities for Simulating from ODE-Based Models
Description: Facilities for running simulations from ordinary
differential equation ('ODE') models, such as pharmacometrics and other
compartmental models. A compilation manager translates the ODE model
into C, compiles it, and dynamically loads the object code into R for
improved computational efficiency. An event table object facilitates
the specification of complex dosing regimens (optional) and sampling
schedules. NB: The use of this package requires both C and
Fortran compilers, for details on their use with R please see
Section 6.3, Appendix A, and Appendix D in the "R Administration and
Installation" manual. Also the code is mostly released under GPL. The
'VODE' and 'LSODA' are in the public domain. The vendored 'SUNDIALS'
'CVODE' sources and headers are released under the BSD-3-Clause license.
The information is available in the inst/COPYRIGHTS.
Author: Matthew L. Fidler [aut, cre] ,
Wenping Wang [aut],
Aaron Collier [ctb] ,
Alan Hindmarsh [ctb],
Arun Srinivasan [ctb],
Ashley Crawford [ctb] ,
Awad H. Al-Mohy [ctb],
Bill Denney [ctb] ,
Cleve Moler [ctb],
Cody J. Balos [ctb] ,
Dan Shumaker [ctb] ,
Dan [...truncated...]
Maintainer: Matthew L. Fidler <matthew.fidler@gmail.com>
Diff between rxode2 versions 5.1.4 dated 2026-07-20 and 5.1.5 dated 2026-07-28
rxode2-5.1.4/rxode2/tests/testthat/433.qs2 |only rxode2-5.1.4/rxode2/tests/testthat/etTrans-drop.qs2 |only rxode2-5.1.4/rxode2/tests/testthat/etTrans1.qs2 |only rxode2-5.1.4/rxode2/tests/testthat/keep-756.qs2 |only rxode2-5.1.4/rxode2/tests/testthat/lincmt-solve-focei-sol.qs2 |only rxode2-5.1.4/rxode2/tests/testthat/test-data-setup.qs2 |only rxode2-5.1.4/rxode2/tests/testthat/test-etTrans-1.qs2 |only rxode2-5.1.4/rxode2/tests/testthat/test-etTrans-780.qs2 |only rxode2-5.1.4/rxode2/tests/testthat/test-example-3-1.qs2 |only rxode2-5.1.4/rxode2/tests/testthat/test-infusion-bolus.qs2 |only rxode2-5.1.4/rxode2/tests/testthat/test-issue-393.qs2 |only rxode2-5.1.4/rxode2/tests/testthat/test-issue-398.qs2 |only rxode2-5.1.4/rxode2/tests/testthat/test-issue-430.qs2 |only rxode2-5.1.4/rxode2/tests/testthat/test-issue-468.qs2 |only rxode2-5.1.5/rxode2/DESCRIPTION | 48 - rxode2-5.1.5/rxode2/MD5 | 355 +++++--- rxode2-5.1.5/rxode2/NAMESPACE | 6 rxode2-5.1.5/rxode2/NEWS.md | 240 +++++ rxode2-5.1.5/rxode2/R/d.R | 61 - rxode2-5.1.5/rxode2/R/dde.R | 88 +- rxode2-5.1.5/rxode2/R/elu.R | 6 rxode2-5.1.5/rxode2/R/et-helpers.R | 4 rxode2-5.1.5/rxode2/R/et-methods.R | 20 rxode2-5.1.5/rxode2/R/et.R | 250 +++++- rxode2-5.1.5/rxode2/R/etNew.R | 54 + rxode2-5.1.5/rxode2/R/etVctrs.R | 21 rxode2-5.1.5/rxode2/R/gelu.R | 4 rxode2-5.1.5/rxode2/R/lrelu.R | 4 rxode2-5.1.5/rxode2/R/piping.R | 24 rxode2-5.1.5/rxode2/R/prelu.R | 4 rxode2-5.1.5/rxode2/R/print.R | 14 rxode2-5.1.5/rxode2/R/relu.R | 4 rxode2-5.1.5/rxode2/R/rxRaw.R | 22 rxode2-5.1.5/rxode2/R/rxode-options.R | 74 - rxode2-5.1.5/rxode2/R/rxode2.R | 29 rxode2-5.1.5/rxode2/R/rxode2_md5.R | 2 rxode2-5.1.5/rxode2/R/rxsolve.R | 77 + rxode2-5.1.5/rxode2/R/selu.R | 4 rxode2-5.1.5/rxode2/R/softplus.R | 4 rxode2-5.1.5/rxode2/R/swish.R | 4 rxode2-5.1.5/rxode2/R/tran.R | 1 rxode2-5.1.5/rxode2/R/ui-assign-parts.R | 13 rxode2-5.1.5/rxode2/R/utils.R | 24 rxode2-5.1.5/rxode2/build/vendor-sundials.R | 106 ++ rxode2-5.1.5/rxode2/cleanup | 1 rxode2-5.1.5/rxode2/cleanup.win | 1 rxode2-5.1.5/rxode2/inst/COPYRIGHTS | 11 rxode2-5.1.5/rxode2/inst/doc/rxode2-syntax.html | 26 rxode2-5.1.5/rxode2/inst/include/rxode2.h | 72 - rxode2-5.1.5/rxode2/inst/include/rxode2parseVer.h | 4 rxode2-5.1.5/rxode2/inst/tools/workaround.R | 54 + rxode2-5.1.5/rxode2/man/ELU.Rd | 4 rxode2-5.1.5/rxode2/man/GELU.Rd | 2 rxode2-5.1.5/rxode2/man/PReLU.Rd | 2 rxode2-5.1.5/rxode2/man/ReLU.Rd | 2 rxode2-5.1.5/rxode2/man/SELU.Rd | 2 rxode2-5.1.5/rxode2/man/Swish.Rd | 2 rxode2-5.1.5/rxode2/man/dELU.Rd | 2 rxode2-5.1.5/rxode2/man/dGELU.Rd | 2 rxode2-5.1.5/rxode2/man/dPReLU.Rd | 2 rxode2-5.1.5/rxode2/man/dReLU.Rd | 2 rxode2-5.1.5/rxode2/man/dSELU.Rd | 2 rxode2-5.1.5/rxode2/man/dSwish.Rd | 2 rxode2-5.1.5/rxode2/man/dlReLU.Rd | 2 rxode2-5.1.5/rxode2/man/dsoftplus.Rd | 2 rxode2-5.1.5/rxode2/man/lReLU.Rd | 2 rxode2-5.1.5/rxode2/man/odeMethodToInt.Rd | 4 rxode2-5.1.5/rxode2/man/rxLastCompile.Rd | 2 rxode2-5.1.5/rxode2/man/rxRawToC.Rd | 4 rxode2-5.1.5/rxode2/man/rxSerialize.Rd | 4 rxode2-5.1.5/rxode2/man/rxSolve.Rd | 50 - rxode2-5.1.5/rxode2/man/rxStateOde.Rd | 3 rxode2-5.1.5/rxode2/man/softplus.Rd | 2 rxode2-5.1.5/rxode2/src/Makevars.in | 9 rxode2-5.1.5/rxode2/src/extraDosing.h | 15 rxode2-5.1.5/rxode2/src/init.c | 3 rxode2-5.1.5/rxode2/src/par_solve.cpp | 6 rxode2-5.1.5/rxode2/src/par_solve.h | 19 rxode2-5.1.5/rxode2/src/qs.cpp | 13 rxode2-5.1.5/rxode2/src/rxData.cpp | 22 rxode2-5.1.5/rxode2/src/sundials_inc |only rxode2-5.1.5/rxode2/src/sundials_sundials_linearsolver.c | 4 rxode2-5.1.5/rxode2/src/sundials_sundials_matrix.c | 4 rxode2-5.1.5/rxode2/src/sundials_sundials_memory.c | 6 rxode2-5.1.5/rxode2/src/sundials_sundials_nonlinearsolver.c | 4 rxode2-5.1.5/rxode2/src/sundials_sundials_nvector.c | 4 rxode2-5.1.5/rxode2/src/sundials_sunlinsol_dense.c | 2 rxode2-5.1.5/rxode2/src/sundials_sunnonlinsol_newton.c | 2 rxode2-5.1.5/rxode2/src/utilc.cpp | 42 + rxode2-5.1.5/rxode2/tests/testthat/433.rds |only rxode2-5.1.5/rxode2/tests/testthat/Rplots.pdf |only rxode2-5.1.5/rxode2/tests/testthat/etTrans-prepfit.rds |only rxode2-5.1.5/rxode2/tests/testthat/etTrans1.rds |only rxode2-5.1.5/rxode2/tests/testthat/keep-756.rds |only rxode2-5.1.5/rxode2/tests/testthat/lincmt-solve-focei-sol.rds |only rxode2-5.1.5/rxode2/tests/testthat/nmtest-evid4.rds |only rxode2-5.1.5/rxode2/tests/testthat/nodup-keep-ev.rds |only rxode2-5.1.5/rxode2/tests/testthat/test-activation.R | 312 +++---- rxode2-5.1.5/rxode2/tests/testthat/test-cbind-study-individual.R | 36 rxode2-5.1.5/rxode2/tests/testthat/test-data-setup.rds |only rxode2-5.1.5/rxode2/tests/testthat/test-data-table.R | 4 rxode2-5.1.5/rxode2/tests/testthat/test-dde.R | 103 ++ rxode2-5.1.5/rxode2/tests/testthat/test-dsl.R | 35 rxode2-5.1.5/rxode2/tests/testthat/test-et.R | 416 +++++++++- rxode2-5.1.5/rxode2/tests/testthat/test-etTrans-780.rds |only rxode2-5.1.5/rxode2/tests/testthat/test-etTrans.R | 164 +-- rxode2-5.1.5/rxode2/tests/testthat/test-example-3-1.R | 4 rxode2-5.1.5/rxode2/tests/testthat/test-example-3-1.rds |only rxode2-5.1.5/rxode2/tests/testthat/test-infusion-bolus.R | 4 rxode2-5.1.5/rxode2/tests/testthat/test-infusion-bolus.rds |only rxode2-5.1.5/rxode2/tests/testthat/test-issue-393.rds |only rxode2-5.1.5/rxode2/tests/testthat/test-issue-398.rds |only rxode2-5.1.5/rxode2/tests/testthat/test-issue-430.rds |only rxode2-5.1.5/rxode2/tests/testthat/test-issue-468.rds |only rxode2-5.1.5/rxode2/tests/testthat/test-keep.R | 4 rxode2-5.1.5/rxode2/tests/testthat/test-lincmt-alag-batch.R |only rxode2-5.1.5/rxode2/tests/testthat/test-lincmt-solve.R | 216 ++--- rxode2-5.1.5/rxode2/tests/testthat/test-modelargs.R | 25 rxode2-5.1.5/rxode2/tests/testthat/test-nmtest.R | 114 +- rxode2-5.1.5/rxode2/tests/testthat/test-nodup-keep.R | 2 rxode2-5.1.5/rxode2/tests/testthat/test-omp-num-threads.R |only rxode2-5.1.5/rxode2/tests/testthat/test-par-solve.R | 4 rxode2-5.1.5/rxode2/tests/testthat/test-raw.R | 36 rxode2-5.1.5/rxode2/tests/testthat/test-rxIs.R | 4 rxode2-5.1.5/rxode2/tests/testthat/test-rxode-issue-393.R | 4 rxode2-5.1.5/rxode2/tests/testthat/test-rxode-issue-398.R | 4 rxode2-5.1.5/rxode2/tests/testthat/test-rxode-issue-430.R | 4 rxode2-5.1.5/rxode2/tests/testthat/test-rxode-issue-433.R | 4 rxode2-5.1.5/rxode2/tests/testthat/test-rxode-issue-468.R | 2 rxode2-5.1.5/rxode2/tests/testthat/test-s3-delayed-register.R |only rxode2-5.1.5/rxode2/tests/testthat/test-sigdig-tol.R |only rxode2-5.1.5/rxode2/tests/testthat/test-sim-err-670.R | 400 ++++----- rxode2-5.1.5/rxode2/tests/testthat/test-udf.R | 414 +++++---- rxode2-5.1.5/rxode2/tests/testthat/test-ui-piping.R | 95 ++ rxode2-5.1.5/rxode2/tests/testthat/test-yeojohnson-derivative.R |only 135 files changed, 3083 insertions(+), 1319 deletions(-)
Title: 'date' C++ Header Library for Date and Time Functionality
Description: A header-only C++ library is provided with support
for dates, time zones, ISO weeks, Julian dates, and Islamic dates.
'date' offers extensive date and time functionality for the C++11,
C++14 and C++17 standards and was written by Howard Hinnant and released
under the MIT license. A slightly modified version has been accepted
(along with 'tz.h') as part of C++20. This package regroups all
header files from the upstream repository by Howard Hinnant so that
other R packages can use them in their C++ code. At present, few of
the types have explicit 'Rcpp' wrappers though these may be added as
needed.
Author: Dirk Eddelbuettel [aut, cre] ,
Howard Hinnant [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppDate versions 0.0.6 dated 2025-05-29 and 0.0.7 dated 2026-07-28
ChangeLog | 20 +++ DESCRIPTION | 8 - MD5 | 16 +-- build/partial.rdb |binary inst/NEWS.Rd | 7 + inst/include/date.h | 33 ++++-- inst/include/iso_week.h | 12 +- inst/include/ptz.h | 241 +++++++++++++++++++++++++++--------------------- inst/include/tz.h | 3 9 files changed, 211 insertions(+), 129 deletions(-)
Title: MAny-Group MAtching
Description: Balancing quasi-experimental field research for effects of covariates is fundamental for drawing causal inference. (Propensity Score) Matching deals with this issue but current
techniques are restricted to binary treatment variables. Moreover, they provide several solutions without providing a comprehensive framework on choosing the best model. The
MAGMA R-package addresses these restrictions by offering nearest neighbor matching based on Propensity Scores or the Mahalanobis Distance for two to four groups. It also includes the option to match data of a 2x2 design. In addition,
MAGMA includes a framework for evaluating the post-matching balance. The package includes functions for the matching process and matching reporting. We provide a General tutorial on
MAGMA and a tutorial for Mahalanobis Distance Matching as vignettes. More information on MAGMA can be found in Feuchter, M. D., Urban, J., Scherrer V., Breit, M. L., and Preckel F. (2022) <https://osf.io/p47nc/>.
Author: Julian Urban [aut, cre],
Markus D. Feuchter [aut],
Vsevolod Scherrer [aut],
Moritz L. Breit [aut],
Franzis Preckel [aut]
Maintainer: Julian Urban <julian.urban@uni-potsdam.de>
Diff between MAGMA.R versions 1.0.4 dated 2025-05-26 and 1.1 dated 2026-07-28
MAGMA.R-1.0.4/MAGMA.R/man/distance_estimator.Rd |only MAGMA.R-1.1/MAGMA.R/DESCRIPTION | 20 MAGMA.R-1.1/MAGMA.R/MD5 | 61 MAGMA.R-1.1/MAGMA.R/NAMESPACE | 95 MAGMA.R-1.1/MAGMA.R/R/Desc_function.R | 1 MAGMA.R-1.1/MAGMA.R/R/Inner_MAGMA_functions.R | 90 MAGMA.R-1.1/MAGMA.R/R/MAGMA_exact_function.R | 298 + MAGMA.R-1.1/MAGMA.R/R/MAGMA_function.R | 480 +- MAGMA.R-1.1/MAGMA.R/R/Non_parametric_descs.R | 4 MAGMA.R-1.1/MAGMA.R/R/Pillai_functions.R | 2 MAGMA.R-1.1/MAGMA.R/R/Visualizing_MAGMA_functions.R | 64 MAGMA.R-1.1/MAGMA.R/R/d_ratio_functions.R | 4 MAGMA.R-1.1/MAGMA.R/R/mean_g_functions.R | 4 MAGMA.R-1.1/MAGMA.R/build/partial.rdb |binary MAGMA.R-1.1/MAGMA.R/build/vignette.rds |binary MAGMA.R-1.1/MAGMA.R/inst/doc/MDM_Vignette.R |only MAGMA.R-1.1/MAGMA.R/inst/doc/MDM_Vignette.Rmd |only MAGMA.R-1.1/MAGMA.R/inst/doc/MDM_Vignette.html |only MAGMA.R-1.1/MAGMA.R/inst/doc/Vignette.R | 90 MAGMA.R-1.1/MAGMA.R/inst/doc/Vignette.Rmd | 56 MAGMA.R-1.1/MAGMA.R/inst/doc/Vignette.html | 1786 +++++----- MAGMA.R-1.1/MAGMA.R/man/MAGMA.Rd | 23 MAGMA.R-1.1/MAGMA.R/man/MAGMA_exact.Rd | 24 MAGMA.R-1.1/MAGMA.R/man/Plot_MAGMA.Rd | 6 MAGMA.R-1.1/MAGMA.R/man/Table_MAGMA.Rd | 8 MAGMA.R-1.1/MAGMA.R/man/initial_unbalance.Rd | 5 MAGMA.R-1.1/MAGMA.R/vignettes/Balance_2x2_MDM.rds |only MAGMA.R-1.1/MAGMA.R/vignettes/Balance_2x2_exact_MDM.rds |only MAGMA.R-1.1/MAGMA.R/vignettes/Balance_gifted_MDM.rds |only MAGMA.R-1.1/MAGMA.R/vignettes/Balance_gifted_exact_MDM.rds |only MAGMA.R-1.1/MAGMA.R/vignettes/Balance_tar_MDM.rds |only MAGMA.R-1.1/MAGMA.R/vignettes/Balance_tar_exact_MDM.rds |only MAGMA.R-1.1/MAGMA.R/vignettes/MDM_Vignette.Rmd |only MAGMA.R-1.1/MAGMA.R/vignettes/Vignette.Rmd | 56 MAGMA.R-1.1/MAGMA.R/vignettes/data_2x2_matched_MDM.rds |only MAGMA.R-1.1/MAGMA.R/vignettes/data_2x2_matched_exact_MDM.rds |only MAGMA.R-1.1/MAGMA.R/vignettes/data_gifted_matched_MDM.rds |only MAGMA.R-1.1/MAGMA.R/vignettes/data_gifted_matched_exact_MDM.rds |only MAGMA.R-1.1/MAGMA.R/vignettes/data_tar_matched_MDM.rds |only MAGMA.R-1.1/MAGMA.R/vignettes/data_tar_matched_exact_MDM.rds |only 40 files changed, 1805 insertions(+), 1372 deletions(-)
Title: Robust Probabilistic Matching of Company Names
Description: A pipeline for matching messy company name strings against a clean dictionary (e.g., 'Orbis').
Implements a cascading strategy: Exact -> Fuzzy ('zoomerjoin') -> 'FTS5' ('SQLite') -> Rarity Weighted.
Name normalization covers German, French, Italian and English legal forms and conventions,
which suits multilingual registers such as the Swiss one.
Normalization discards detail, so several dictionary entries can collapse onto one string;
these groups are matched once and a crosswalk back to every original entry is retained.
References: Beniamino Green (2025) <https://github.com/beniaminogreen/zoomerjoin>; <https://www.sqlite.org/fts5.html>.
Author: Giulian Etingin-Frati [aut, cre]
Maintainer: Giulian Etingin-Frati <etingin-frati@kof.ethz.ch>
Diff between firmmatchr versions 0.1.3 dated 2026-03-06 and 0.2.0 dated 2026-07-28
DESCRIPTION | 25 + MD5 | 35 +- NAMESPACE | 73 ++--- NEWS.md | 147 ++++++++-- R/crosswalk.R |only R/engines.R | 28 + R/globals.R | 20 - R/match_pipeline.R | 570 +++++++++++++++++++++++++++------------- R/normalize.R | 310 +++++++++++++++++---- README.md | 420 +++++++++++++++++++---------- inst/WORDLIST | 13 man/azure_chat_request.Rd | 70 ++-- man/company_name_stopwords.Rd |only man/dict_crosswalk.Rd |only man/expand_matches.Rd |only man/match_companies.Rd | 214 +++++++++------ man/normalize_company_name.Rd | 128 +++++++- man/validate_matches_llm.Rd | 134 ++++----- tests/testthat/helper-quiet.R |only tests/testthat/test-match.R | 278 +++++++++++++++++-- tests/testthat/test-normalize.R | 201 +++++++++++++- 21 files changed, 1924 insertions(+), 742 deletions(-)
Title: EM Algorithm for Model-Based Clustering of Finite Mixture
Gaussian Distribution
Description: EM algorithms and several efficient
initialization methods for model-based clustering of finite
mixture Gaussian distribution with unstructured dispersion
in both of unsupervised and semi-supervised learning.
Author: Wei-Chen Chen [aut, cre],
Ranjan Maitra [aut],
Volodymyr Melnykov [ctb],
Dan Nettleton [ctb],
David Faden [ctb],
Rouben Rostamian [ctb],
R Core team [ctb]
Maintainer: Wei-Chen Chen <wccsnow@gmail.com>
Diff between EMCluster versions 0.2-17 dated 2025-01-08 and 0.2-18 dated 2026-07-28
ChangeLog | 3 +++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/EMCluster-guide.pdf |binary vignettes/EMCluster-include/EMCluster.bib | 12 ++++++++++-- 5 files changed, 21 insertions(+), 10 deletions(-)
Title: Robust Distance-Based Visualization and Analysis of Mixed-Type
Data
Description: Robust distance-based methods applied to matrices and data frames, producing distance matrices that can be used as input for various visualization techniques such as graphs, heatmaps, or multidimensional scaling configurations. See Boj and Grané (2024) <doi:10.1016/j.seps.2024.101992>, Boj et al. (2026) <doi:10.1007/s10260-026-00860-1>, and Grané et al. (2026) <doi:10.1007/s10182-026-00565-6>.
Author: Marcos Alvarez [aut],
Eva Boj [aut, cre],
Aurea Grane [aut]
Maintainer: Eva Boj <evaboj@ub.edu>
Diff between dbrobust versions 1.1.0 dated 2026-07-23 and 1.1.1 dated 2026-07-28
DESCRIPTION | 10 - MD5 | 14 - NEWS.md | 7 R/robust_distances.R | 11 - build/partial.rdb |binary inst/REFERENCES.bib | 127 ++++++++-------- man/calculate_distances.Rd | 356 ++++++++++++++++++++++----------------------- man/robust_distances.Rd | 11 - 8 files changed, 280 insertions(+), 256 deletions(-)
Title: Cosmic Insights: Statistical Frameworks for Astronomers
Description: A comprehensive toolkit for astronomical and cosmological
computations. Provides functions for angular coordinate conversions
(degrees, hours-minutes-seconds, degrees-minutes-seconds, and radians),
access to fundamental physical constants, queries to the Gaia Archive TAP
(Table Access Protocol) service, cosmological distance calculations,
early-universe thermal physics including photon density, 'Saha' equation
solutions, and a full thermal-cosmology module covering the Hubble rate in
the radiation-dominated era, effective relativistic degrees of freedom,
entropy density, equilibrium yields, the Boltzmann relic-abundance
('pebble') equation for WIMP freeze-out, the freeze-out temperature solver,
and the Peebles equation for hydrogen recombination. Also includes the
Drake equation for estimating the number of communicating extraterrestrial
civilisations in the Milky Way.
Author: Samrit Pramanik [aut, cre] ,
Kazi Abu Rousan [aut]
Maintainer: Samrit Pramanik <samrit.2442@gmail.com>
Diff between astronomR versions 0.1.0 dated 2026-05-27 and 0.3.0 dated 2026-07-28
DESCRIPTION | 20 +-- LICENSE | 2 MD5 | 28 +++- NAMESPACE | 10 + NEWS.md | 60 ++++++++- R/00_constants.R | 2 R/07_drake_equation.R |only R/08_thermal_cosmology.R |only README.md | 212 +++++++++++++++++++++++++++----- inst/cran_submission_checklist.md |only man/boltzmann_pebble_rhs.Rd |only man/constants_df.Rd | 10 - man/drake_equation.Rd |only man/entropy_density.Rd |only man/equilibrium_number_density.Rd |only man/equilibrium_yield.Rd |only man/freeze_out_xf.Rd |only man/g_star_eff.Rd |only man/hubble_radiation.Rd |only man/peebles_rhs.Rd |only man/solve_relic_abundance.Rd |only tests/testthat/test-thermal_cosmology.R |only 22 files changed, 293 insertions(+), 51 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2016-12-07 1.1.0
2015-11-13 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-04-18 1.2.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-05-05 0.2.9
2023-03-05 0.2.8
2022-08-22 0.2.5
2022-01-25 0.2.1
2022-01-12 0.2.0
2021-10-13 0.1.9
2021-09-30 0.1.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-08-22 1.0
2021-06-07 0.9
2020-04-29 0.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-16 0.1.0
Title: 'DuckDB' High Throughput Sequencing File Formats Reader
Extension
Description: Bundles the 'duckhts' 'DuckDB' extension for reading High Throughput
Sequencing file formats with 'DuckDB'. The 'DuckDB' C extension API
<https://duckdb.org/docs/stable/clients/c/api> and its 'htslib' dependency are
compiled from vendored sources during package installation. James K Bonfield and co-authors (2021) <doi:10.1093/gigascience/giab007>. VariantKey / RegionKey support follows Nicola Asuni (2018) <doi:10.1101/473744>.
Author: Sounkou Mahamane Toure [aut, cre],
James K Bonfield, John Marshall,Petr Danecek ,Heng Li , Valeriu Ohan,
Andrew Whitwham,Thomas Keane , Robert M Davies [ctb] ,
Brent Pedersen [cph] ,
Giulio Genovese [cph] ,
Nicola Asuni [cph] ,
Devon Ryan [cph] ,
Duc [...truncated...]
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>
Diff between Rduckhts versions 1.5.0-0.1.0 dated 2026-07-24 and 1.5.1-0.1.3 dated 2026-07-28
DESCRIPTION | 10 MD5 | 150 +++--- NAMESPACE | 1 NEWS.md | 42 + R/bootstrap.R | 34 - R/duckhts.R | 187 ++++++-- configure | 51 +- configure.win | 85 +++ inst/duckhts_extension/bam_bed_coverage.c | 35 - inst/duckhts_extension/bcf_reader.c | 11 inst/duckhts_extension/bcftools_norm_udf.c | 3 inst/duckhts_extension/cgranges.c | 2 inst/duckhts_extension/cgranges_api.c | 224 ---------- inst/duckhts_extension/duckvep/duckvep_annotate.c | 18 inst/duckhts_extension/duckvep/duckvep_model.c | 3 inst/duckhts_extension/duckvep/duckvep_sql.c | 57 +- inst/duckhts_extension/duckvep/duckvep_variant_tile.c | 8 inst/duckhts_extension/duckvep/duckvep_variant_tile.h | 7 inst/duckhts_extension/duckvep/kernel/include/duckvep_kernel.h | 6 inst/duckhts_extension/duckvep/kernel/src/duckvep_delta.c | 18 inst/duckhts_extension/duckvep/kernel/src/duckvep_delta.h | 2 inst/duckhts_extension/duckvep/kernel/src/duckvep_event.h | 59 ++ inst/duckhts_extension/duckvep/kernel/src/duckvep_kernel.c | 96 +++- inst/duckhts_extension/duckvep/kernel/src/duckvep_projection.c | 65 ++ inst/duckhts_extension/duckvep/kernel/src/duckvep_projection.h | 8 inst/duckhts_extension/fastq_qc.c | 8 inst/duckhts_extension/libBigWig/bwRead.c | 2 inst/duckhts_extension/liftover_udf.c | 4 inst/duckhts_extension/mosdepth_table.c | 5 inst/duckhts_extension/samtools_idxstats_table.c | 9 inst/duckhts_extension/vep_parser.c | 4 inst/function_catalog/functions.md | 2 inst/function_catalog/functions.tsv | 2 inst/function_catalog/functions.yaml | 2 inst/htslib_config.R.in | 1 inst/tinytest/test_bam_bed_coverage.R | 5 inst/tinytest/test_bam_file_offset.R | 7 inst/tinytest/test_basic.R | 5 inst/tinytest/test_bcf.R | 15 inst/tinytest/test_bcf_regression.R | 15 inst/tinytest/test_bcftools_norm.R | 5 inst/tinytest/test_bigwig.R | 4 inst/tinytest/test_bin_counts.R | 5 inst/tinytest/test_cgranges_api.R | 5 inst/tinytest/test_cigar_utils.R | 5 inst/tinytest/test_connection.R |only inst/tinytest/test_convert_parquet.R | 14 inst/tinytest/test_duckvep.R | 59 ++ inst/tinytest/test_fastq_qc.R | 4 inst/tinytest/test_htslib_contract.R | 17 inst/tinytest/test_indexes_bgzip.R | 5 inst/tinytest/test_integration.R | 10 inst/tinytest/test_intervals.R | 5 inst/tinytest/test_liftover.R | 5 inst/tinytest/test_liftover_stress.R | 5 inst/tinytest/test_mosdepth.R | 5 inst/tinytest/test_multi.R | 4 inst/tinytest/test_munge.R | 5 inst/tinytest/test_munge_threading.R | 5 inst/tinytest/test_parallel_empty_contigs.R | 5 inst/tinytest/test_pileup.R | 6 inst/tinytest/test_quality_encoding.R | 4 inst/tinytest/test_samtools_idxstats.R | 5 inst/tinytest/test_score.R | 5 inst/tinytest/test_seq_ops.R | 6 inst/tinytest/test_variantkey_regionkey.R | 5 man/detect_complex_types.Rd | 3 man/duckhts_load.Rd | 6 man/extract_array_element.Rd | 3 man/extract_map_data.Rd | 3 man/rduckhts_bam.Rd | 3 man/rduckhts_bcf.Rd | 3 man/rduckhts_connect.Rd |only man/rduckhts_htslib_config.Rd | 3 man/rduckhts_htslib_info.Rd | 5 man/rduckhts_load.Rd | 26 - man/rduckhts_simd_backend.Rd | 3 77 files changed, 840 insertions(+), 689 deletions(-)
Title: Nonparametric Multiple Change Point Detection Using Wild Binary
Segmentation
Description: Implements nonparametric multiple change-point detection for
univariate sequences using Wild Binary Segmentation, as described in
Ross (2026) "Nonparametric Detection of Multiple Location-Scale Change
Points via Wild Binary Segmentation"
<doi:10.48550/arXiv.2107.01742>. The package provides Mann--Whitney,
Mood, Lepage, Cramér--von Mises, and modified Baumgartner rank-based
statistics, together with method-specific thresholds for controlling
the probability of incorrectly detecting a change point in a homogeneous
sequence.
Author: Gordon J. Ross [aut, cre]
Maintainer: Gordon J. Ross <gordon.ross@ed.ac.uk>
Diff between npwbs versions 0.3.0 dated 2026-05-02 and 0.4.0 dated 2026-07-28
DESCRIPTION | 24 +++- MD5 | 24 ++-- NAMESPACE | 4 NEWS.md | 8 + R/RcppExports.R |only R/package-functions.R | 275 ++++++++++++++++++-------------------------------- R/sysdata.rda |binary inst/CITATION | 4 man/detectChanges.Rd | 15 +- src |only tests/test-package.R | 163 ++++++++++++++++------------- 11 files changed, 244 insertions(+), 273 deletions(-)
Title: Liu Regression with Liu Biasing Parameters and Statistics
Description: Linear Liu regression coefficient's estimation and testing with different Liu related measures such as MSE, R-squared etc.
REFERENCES
i. Akdeniz and Kaciranlar (1995) \doi{10.1080/03610929508831585}
ii. Druilhet and Mom (2008) \doi{10.1016/j.jmva.2006.06.011}
iii. Imdadullah, Aslam, and Saima (2017)
iv. Liu (1993) \doi{10.1080/03610929308831027}
v. Liu (2001) \doi{10.1016/j.jspi.2010.05.030}.
Author: Imdad Ullah Muhammad [aut, cre] ,
Aslam Muhammad [aut, ctb]
Maintainer: Imdad Ullah Muhammad <mimdadasad@gmail.com>
Diff between liureg versions 1.1.2 dated 2018-04-08 and 1.1.3 dated 2026-07-28
DESCRIPTION | 36 +++++++++++++++++++++--------------- MD5 | 31 ++++++++++++++++--------------- build |only inst/CITATION | 48 +++++++++++++++++++----------------------------- inst/NEWS.Rd | 13 +++++++++++++ man/dest.Rd | 8 ++++---- man/hatl.Rd | 2 +- man/infoliu.Rd | 6 +++--- man/liu.Rd | 6 +++--- man/lstats.liu.Rd | 10 +++++----- man/plot.biasliu.Rd | 2 +- man/plot.infoliu.Rd | 2 +- man/plot.liu.Rd | 2 +- man/press.liu.Rd | 8 ++++---- man/residuals.liu.Rd | 4 ++-- man/summary.liu.Rd | 4 ++-- man/vcov.liu.Rd | 6 +++--- 17 files changed, 99 insertions(+), 89 deletions(-)
Title: Bayesian Latent Gaussian Modelling using INLA and Extensions
Description: Facilitates spatial and general latent Gaussian modelling using
integrated nested Laplace approximation via the INLA package (<https://www.r-inla.org>).
Additionally, extends the GAM-like model class to more general nonlinear predictor
expressions, and implements a log Gaussian Cox process likelihood for
modelling univariate and spatial point processes based on ecological survey data.
Model components are specified with general inputs and mapping methods to the
latent variables, and the predictors are specified via general R expressions,
with separate expressions for each observation likelihood model in
multi-likelihood models. A prediction method based on fast Monte Carlo sampling
allows posterior prediction of general expressions of the latent variables.
Ecology-focused introduction in Bachl, Lindgren, Borchers, and Illian (2019)
<doi:10.1111/2041-210X.13168>.
Author: Finn Lindgren [aut, cre, cph] ,
Fabian E. Bachl [aut, cph] ,
David L. Borchers [ctb, dtc, cph] ,
Daniel Simpson [ctb, cph] ,
Lindesay Scott-Howard [ctb, dtc, cph] ,
Andy Seaton [ctb] ,
Man Ho Suen [ctb, cph] ,
Pierre Roudier [ctb, cph] ,
Tim Meehan [ [...truncated...]
Maintainer: Finn Lindgren <finn.lindgren@gmail.com>
Diff between inlabru versions 2.14.1 dated 2026-05-01 and 2.15.0 dated 2026-07-28
inlabru-2.14.1/inlabru/inst/misc/2d_lgcp_residuals_functions_sf.R |only inlabru-2.14.1/inlabru/man/bm_mesh_B.Rd |only inlabru-2.14.1/inlabru/man/bru_log_new.Rd |only inlabru-2.14.1/inlabru/man/ibm_linear.Rd |only inlabru-2.14.1/inlabru/man/predict.bru.Rd |only inlabru-2.14.1/inlabru/tests/testthat/f.txt |only inlabru-2.14.1/inlabru/tests/testthat/test-mapper.R |only inlabru-2.14.1/inlabru/tests/testthat/test-skips.R |only inlabru-2.15.0/inlabru/DESCRIPTION | 74 inlabru-2.15.0/inlabru/MD5 | 370 - inlabru-2.15.0/inlabru/NAMESPACE | 129 inlabru-2.15.0/inlabru/NEWS.md | 41 inlabru-2.15.0/inlabru/R/access_trace.R | 9 inlabru-2.15.0/inlabru/R/bru.gof.R | 26 inlabru-2.15.0/inlabru/R/bru.inference.R | 2083 +++++----- inlabru-2.15.0/inlabru/R/bru_conversion.R | 12 inlabru-2.15.0/inlabru/R/bru_index.R | 53 inlabru-2.15.0/inlabru/R/bru_input.R | 191 inlabru-2.15.0/inlabru/R/bru_is.R | 193 inlabru-2.15.0/inlabru/R/bru_sp.R | 41 inlabru-2.15.0/inlabru/R/data.gorillas.R | 2 inlabru-2.15.0/inlabru/R/data.mexdolphin.R | 4 inlabru-2.15.0/inlabru/R/deltaIC.R | 2 inlabru-2.15.0/inlabru/R/effect.R | 597 +- inlabru-2.15.0/inlabru/R/environment.R | 226 - inlabru-2.15.0/inlabru/R/fmesher.R | 7 inlabru-2.15.0/inlabru/R/gcpo.R |only inlabru-2.15.0/inlabru/R/ggplot.R | 196 inlabru-2.15.0/inlabru/R/hexagon_tiling.R | 29 inlabru-2.15.0/inlabru/R/hierarchical_basis.R | 52 inlabru-2.15.0/inlabru/R/inla.R | 257 - inlabru-2.15.0/inlabru/R/inlabru-package.R | 6 inlabru-2.15.0/inlabru/R/inlabru-reexports.R |only inlabru-2.15.0/inlabru/R/legacy_methods.R |only inlabru-2.15.0/inlabru/R/local_testthat.R | 50 inlabru-2.15.0/inlabru/R/mapper_collect.R | 163 inlabru-2.15.0/inlabru/R/mapper_expr.R |only inlabru-2.15.0/inlabru/R/mapper_repeat.R | 63 inlabru-2.15.0/inlabru/R/mapper_sum.R | 76 inlabru-2.15.0/inlabru/R/mappers.R | 956 ++-- inlabru-2.15.0/inlabru/R/model.R | 1358 +++--- inlabru-2.15.0/inlabru/R/nlinla.R | 162 inlabru-2.15.0/inlabru/R/object_upgrade.R | 164 inlabru-2.15.0/inlabru/R/plotsample.R | 46 inlabru-2.15.0/inlabru/R/pred_expr.R | 200 inlabru-2.15.0/inlabru/R/rgl.R | 78 inlabru-2.15.0/inlabru/R/sampling.R | 90 inlabru-2.15.0/inlabru/R/spatstat.R | 26 inlabru-2.15.0/inlabru/R/spde.R | 78 inlabru-2.15.0/inlabru/R/stack.R | 10 inlabru-2.15.0/inlabru/R/tidiers.R |only inlabru-2.15.0/inlabru/R/track_plotting.R | 164 inlabru-2.15.0/inlabru/R/transformation.R | 8 inlabru-2.15.0/inlabru/R/used.R | 409 + inlabru-2.15.0/inlabru/R/utils.R | 173 inlabru-2.15.0/inlabru/README.md | 145 inlabru-2.15.0/inlabru/build/partial.rdb |binary inlabru-2.15.0/inlabru/build/vignette.rds |binary inlabru-2.15.0/inlabru/inst/doc/articles.html | 6 inlabru-2.15.0/inlabru/inst/doc/classes.html | 358 + inlabru-2.15.0/inlabru/inst/doc/component.html | 2 inlabru-2.15.0/inlabru/inst/doc/linearapprox.html | 8 inlabru-2.15.0/inlabru/inst/doc/prediction_scores.html | 64 inlabru-2.15.0/inlabru/inst/misc/2d_lgcp_residuals_functions.R | 129 inlabru-2.15.0/inlabru/inst/misc/2d_lgcp_residuals_functions_sp.R |only inlabru-2.15.0/inlabru/man/augment.bru.Rd |only inlabru-2.15.0/inlabru/man/bm_aggregate.Rd | 48 inlabru-2.15.0/inlabru/man/bm_collect.Rd | 45 inlabru-2.15.0/inlabru/man/bm_const.Rd | 48 inlabru-2.15.0/inlabru/man/bm_expr.Rd |only inlabru-2.15.0/inlabru/man/bm_factor.Rd | 48 inlabru-2.15.0/inlabru/man/bm_fm_mesh_1d.Rd | 47 inlabru-2.15.0/inlabru/man/bm_fmesher.Rd | 45 inlabru-2.15.0/inlabru/man/bm_harmonics.Rd | 48 inlabru-2.15.0/inlabru/man/bm_index.Rd | 50 inlabru-2.15.0/inlabru/man/bm_linear.Rd | 48 inlabru-2.15.0/inlabru/man/bm_logitaverage.Rd | 48 inlabru-2.15.0/inlabru/man/bm_logsumexp.Rd | 48 inlabru-2.15.0/inlabru/man/bm_marginal.Rd | 54 inlabru-2.15.0/inlabru/man/bm_matrix.Rd | 48 inlabru-2.15.0/inlabru/man/bm_multi.Rd | 47 inlabru-2.15.0/inlabru/man/bm_pipe.Rd | 48 inlabru-2.15.0/inlabru/man/bm_reparam.Rd | 48 inlabru-2.15.0/inlabru/man/bm_repeat.Rd | 45 inlabru-2.15.0/inlabru/man/bm_scale.Rd | 48 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inlabru-2.15.0/inlabru/tests/testthat/test-multi_like.R | 27 inlabru-2.15.0/inlabru/tests/testthat/test-response_size.R | 100 inlabru-2.15.0/inlabru/tests/testthat/test-tidiers.R |only 202 files changed, 8982 insertions(+), 5457 deletions(-)
Title: Gradient Projection Factor Rotation
Description: Gradient projection algorithms for orthogonal and oblique rotation
of factor loadings matrices in factor analysis. Implements a comprehensive
set of rotation criteria including quartimax, quartimin, oblimin, geomin,
simplimax, the Crawford-Ferguson family, and target rotation, among others.
Supports multiple random starts. For details see Bernaards and Jennrich (2005)
<doi:10.1177/0013164404272507>.
Author: Coen Bernaards [aut, cre],
Paul Gilbert [aut],
Robert Jennrich [aut]
Maintainer: Coen Bernaards <cab.gparotation@gmail.com>
Diff between GPArotation versions 2026.6-1 dated 2026-06-18 and 2026.7-1 dated 2026-07-28
DESCRIPTION | 6 MD5 | 46 - NEWS | 7 data/Thurstone.rda |binary inst/doc/GPA1guide.pdf |binary inst/doc/GPA2local.pdf |binary inst/doc/GPA3bifactor.pdf |binary inst/doc/GPA4fitstats.pdf |binary man/00.GPArotation.Rd | 1 man/Thurstone.Rd | 22 tests/Harman.R | 4 tests/Jennrich2002.R | 80 -- tests/KaiserNormalization.R | 6 tests/MASSoblimin.R | 4 tests/Revelle.R | 2 tests/Thurstone.R | 4 tests/WansbeekMeijer.R | 4 tests/diagnosticsTests.R |only tests/errormessages.R | 4 tests/legacyVsBB_extra.R |only tests/lp.R | 132 +-- tests/print-GPArotation.R | 4 tests/rotations.R | 1587 +++++++++++++++++++++----------------------- tests/rotationsRS.R | 968 ++++++++++++-------------- tests/varimaxVarimax.R | 4 25 files changed, 1344 insertions(+), 1541 deletions(-)
Title: Tools for Fast Computing and Visualizing Euclidean Minimum
Spanning Trees
Description: Fast and easy computation of Euclidean Minimum Spanning Trees (EMST) from data,
relying on the R API for 'mlpack' - the C++ Machine Learning Library (Curtin et. al., 2013).
'emstreeR' uses the Dual-Tree Boruvka (March, Ram, Gray, 2010, <doi:10.1145/1835804.1835882>),
which is theoretically and empirically the fastest algorithm for computing an EMST. This package also provides
functions and an S3 method for readily visualizing Minimum Spanning Trees (MST) using either the
style of the 'base', 'scatterplot3d', or 'ggplot2' libraries; and functions to export the MST output to shapefiles.
Author: Allan Quadros [aut, cre],
Duncan Garmonsway [ctb]
Maintainer: Allan Quadros <allanvcq@gmail.com>
Diff between emstreeR versions 3.1.3 dated 2025-12-17 and 3.2.0 dated 2026-07-28
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- R/ComputeMST.R | 6 +++++- 3 files changed, 12 insertions(+), 8 deletions(-)
Title: Plots the CHOIR Body Map
Description: Collection of utility functions for visualizing
body map data collected with the Collaborative Health Outcomes
Information Registry.
Author: Eric Cramer [aut, cre] ,
Stanford University School of Medicine [cph, fnd]
Maintainer: Eric Cramer <dev.emc503@gmail.com>
Diff between CHOIRBM versions 0.0.2 dated 2021-02-15 and 0.0.3 dated 2026-07-28
DESCRIPTION | 16 MD5 | 84 +++- NAMESPACE | 24 + NEWS.md | 51 +- R/agg_choirbm_list.R |only R/comp_choirbm_chi.R |only R/comp_choirbm_glm.R |only R/comp_choirbm_ztest.R |only R/comp_cooccurrence.R |only R/convert_bodymap.R |only R/convert_bodymaps.R |only R/gen_example_data.R | 66 +-- R/globals.R | 2 R/num_areas.R |only R/plot_cooccurrence.R |only R/plot_female_choirbm.R | 72 +-- R/plot_male_choirbm.R | 70 +-- R/plot_nareas_histogram.R |only R/prep_bodymap.R |only R/string_to_map.R | 72 ++- R/validation.R | 64 +-- README.md | 202 +++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/calc-cooccurrence.R |only inst/doc/calc-cooccurrence.Rmd |only inst/doc/calc-cooccurrence.html |only inst/doc/choir-db-ex.R |only inst/doc/choir-db-ex.Rmd |only inst/doc/choir-db-ex.html |only inst/doc/compare-choirbms.R |only inst/doc/compare-choirbms.Rmd |only inst/doc/compare-choirbms.html |only inst/doc/convert_bodymaps.R |only inst/doc/convert_bodymaps.Rmd |only inst/doc/convert_bodymaps.html |only inst/doc/plot-one-patient.R | 32 - inst/doc/plot-one-patient.Rmd | 74 ++-- inst/doc/plot-one-patient.html | 570 +++++++++++++++++++++---------- inst/img |only man/CHOIRBM-package.Rd | 6 man/agg_choirbm_list.Rd |only man/comp_choirbm_chi.Rd |only man/comp_choirbm_glm.Rd |only man/comp_choirbm_ztest.Rd |only man/comp_cooccurrence.Rd |only man/convert_bodymap.Rd |only man/convert_bodymaps.Rd |only man/num_areas.Rd |only man/plot_cooccurrence.Rd |only man/plot_nareas_histogram.Rd |only man/prep_bodymaps.Rd |only man/string_to_map.Rd | 9 tests/testthat.R | 8 tests/testthat/test-agg-choirbm-list.R |only tests/testthat/test-comp-choirbm-glm.R |only tests/testthat/test-comp-concurrence.R |only tests/testthat/test-comp_choirbm_ztest.R |only tests/testthat/test-num_areas.R |only tests/testthat/test-string-to-map.R | 44 +- vignettes/calc-cooccurrence.Rmd |only vignettes/choir-db-ex.Rmd |only vignettes/compare-choirbms.Rmd |only vignettes/convert_bodymaps.Rmd |only vignettes/plot-one-patient.Rmd | 74 ++-- 65 files changed, 932 insertions(+), 608 deletions(-)
Title: Analyze Multiple Exposure Realizations in Association Studies
Description: Analyze association studies with multiple realizations of a noisy or uncertain exposure. These can be obtained from e.g. a two-dimensional Monte Carlo dosimetry system (Simon et al 2015 <doi:10.1667/RR13729.1>) to characterize exposure uncertainty.
The implemented methods are regression calibration (Carroll et al. 2006 <doi:10.1201/9781420010138>), extended
regression calibration (Little et al. 2023 <doi:10.1038/s41598-023-42283-y>), Monte Carlo maximum
likelihood (Stayner et al. 2007 <doi:10.1667/RR0677.1>), frequentist model averaging (Kwon et al. 2023 <doi:10.1371/journal.pone.0290498>),
and Bayesian model averaging (Kwon et al. 2016 <doi:10.1002/sim.6635>). Supported model families are
Gaussian, binomial, multinomial, Poisson, proportional hazards, and conditional logistic.
Author: Sander Roberti [aut, cre] ,
William Wheeler [aut],
Deukwoo Kwon [aut] ,
Ruth Pfeiffer [ctb] ,
NCI [cph, fnd]
Maintainer: Sander Roberti <statspackages@sanderroberti.nl>
Diff between ameras versions 0.5.1 dated 2026-07-16 and 0.5.2 dated 2026-07-28
DESCRIPTION | 10 MD5 | 56 +-- NEWS.md | 17 + R/ameras.R | 1 R/likelihoods.R | 262 ++++++++++++++++-- R/methods-fma-bma.R | 32 +- R/methods-rc-mcml.R | 19 + R/modifier-design.R | 37 +- R/optimization.R | 3 R/timing.R | 4 R/utils.R | 56 ++- README.md | 24 - inst/doc/confidenceintervals.html | 14 inst/doc/modelfitting.html | 416 ++++++++++++++--------------- inst/doc/parallelfma.Rmd | 13 inst/doc/parallelfma.html | 30 +- inst/doc/relativeriskmodels.html | 12 inst/doc/standardanalysis.html | 4 inst/doc/transformations.html | 10 man/ameras-package.Rd | 2 man/ameras.Rd | 10 man/confint.Rd | 6 man/summary.Rd | 6 tests/testthat/test-fma-assembler.R | 3 tests/testthat/test-fma-edge-cases.R | 34 ++ tests/testthat/test-modifier-formulas.R | 132 ++++++++- tests/testthat/test-optimization-helpers.R | 5 tests/testthat/test-timing.R | 21 - vignettes/parallelfma.Rmd | 13 29 files changed, 861 insertions(+), 391 deletions(-)
Title: Parametric Statistical Modelling and Inference for the
'spatstat' Family
Description: Functionality for parametric statistical modelling and inference for spatial data,
mainly spatial point patterns, in the 'spatstat' family of packages.
(Excludes analysis of spatial data on a linear network,
which is covered by the separate package 'spatstat.linnet'.)
Supports parametric modelling, formal statistical inference, and model validation.
Parametric models include Poisson point processes, Cox point processes, Neyman-Scott cluster processes, Gibbs point processes and determinantal point processes. Models can be fitted to data using maximum likelihood, maximum pseudolikelihood, maximum composite likelihood and the method of minimum contrast. Fitted models can be simulated and predicted. Formal inference includes hypothesis tests (quadrat counting tests, Cressie-Read tests, Clark-Evans test, Berman test, Diggle-Cressie-Loosmore-Ford test, scan test, studentised permutation test, segregation test, ANOVA tests of fitted models, adjusted composite likelihood ratio test, envelope t [...truncated...]
Author: Adrian Baddeley [aut, cre, cph] ,
Rolf Turner [aut, cph] ,
Ege Rubak [aut, cph] ,
Kasper Klitgaard Berthelsen [ctb],
Achmad Choiruddin [ctb, cph],
Jean-Francois Coeurjolly [ctb],
Ottmar Cronie [ctb],
Tilman Davies [ctb],
Julian Gilbey [ctb],
Yongtao [...truncated...]
Maintainer: Adrian Baddeley <Adrian.Baddeley@curtin.edu.au>
Diff between spatstat.model versions 3.7-1 dated 2026-05-29 and 3.7-2 dated 2026-07-28
DESCRIPTION | 16 MD5 | 103 ++--- NAMESPACE | 11 NEWS | 67 +++ R/addvar.R | 716 +++++++++++++++++++++++------------------ R/aucmodel.R | 3 R/detPPF-class.R | 8 R/detpointprocfamilyfun.R | 4 R/dppm.R | 4 R/dppmclass.R | 7 R/ic.kppm.R | 7 R/kppm.R | 19 - R/kppmMinCon.R | 4 R/mincontrast.R | 27 - R/objsurf.R | 353 ++++++++++++++++---- R/palmdiagnose.R | 46 +- R/parres.R | 45 ++ R/rhohat.R | 6 R/rhohat.slrm.R | 6 R/sysdata.rda |binary R/vcov.kppm.R | 12 build/partial.rdb |binary inst/doc/packagesizes.txt | 1 inst/info/packagesizes.txt | 1 man/HierHard.Rd | 18 - man/HierStrauss.Rd | 18 - man/HierStraussHard.Rd | 17 man/LennardJones.Rd | 14 man/Penttinen.Rd | 5 man/addvar.Rd | 66 +++ man/auc.ppm.Rd | 6 man/cdf.test.Rd | 6 man/cdf.test.mppm.Rd | 10 man/dppm.Rd | 22 + man/kppm.Rd | 16 man/macros/defns.Rd | 30 + man/objsurf.Rd | 18 - man/palmdiagnose.Rd | 30 + man/parres.Rd | 9 man/plot.kppm.Rd | 8 man/ppm.Rd | 20 - man/profilepl.Rd | 16 man/rhohat.Rd | 11 man/slrm.Rd | 30 - man/spatstat.model-internal.Rd | 9 man/spatstat.model-package.Rd | 86 +++- man/vcov.dppm.Rd |only man/vcov.kppm.Rd | 4 man/vcov.ppm.Rd | 15 tests/testsD.R | 13 tests/testsL.R | 30 - tests/testsT.R | 57 --- tests/testsUtoZ.R | 11 53 files changed, 1332 insertions(+), 729 deletions(-)
More information about spatstat.model at CRAN
Permanent link
Title: Benchmarking and Visualization Toolkit for Penalized Cox Models
Description: Creates nomogram visualizations for penalized Cox regression
models, with the support of reproducible survival model building,
validation, calibration, and comparison for high-dimensional data.
Author: Nan Xiao [aut, cre] ,
Qing-Song Xu [aut],
Miao-Zhu Li [aut],
Frank Harrell [ctb] ,
Sergej Potapov [ctb] ,
Werner Adler [ctb] ,
Matthias Schmid [ctb]
Maintainer: Nan Xiao <me@nanx.me>
Diff between hdnom versions 6.2.0 dated 2026-05-12 and 6.2.1 dated 2026-07-28
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 7 +++++++ R/2_2_convert_model.R | 2 +- build/vignette.rds |binary 5 files changed, 15 insertions(+), 8 deletions(-)
Title: Extensible Derivative Pricing and Risk Analytics
Description: Tools for pricing and analysing financial derivatives under
the classical lognormal diffusion model and geometric Brownian motion
assumptions. The package provides analytical European option prices,
Monte Carlo pricing with antithetic and control variates, confidence
intervals, finite-difference Greeks, and path simulation for
path-dependent payoffs. The simulation interfaces accept user-defined
payoff functions, enabling transparent construction of custom contracts
while reporting numerical uncertainty.
Author: Amit Kumar Jha [aut, cre, cph]
Maintainer: Amit Kumar Jha <jha.8@iitj.ac.in>
Diff between CustomDerivative versions 0.1.1 dated 2023-09-30 and 0.2.0 dated 2026-07-28
CustomDerivative-0.1.1/CustomDerivative/R/custom.R |only CustomDerivative-0.1.1/CustomDerivative/tests/testthat/test-custom_derivative.R |only CustomDerivative-0.2.0/CustomDerivative/DESCRIPTION | 31 CustomDerivative-0.2.0/CustomDerivative/MD5 | 27 CustomDerivative-0.2.0/CustomDerivative/NAMESPACE | 19 CustomDerivative-0.2.0/CustomDerivative/NEWS.md |only CustomDerivative-0.2.0/CustomDerivative/R/black-scholes.R |only CustomDerivative-0.2.0/CustomDerivative/R/greeks.R |only CustomDerivative-0.2.0/CustomDerivative/R/legacy-r6.R |only CustomDerivative-0.2.0/CustomDerivative/R/monte-carlo.R |only CustomDerivative-0.2.0/CustomDerivative/R/path-dependent.R |only CustomDerivative-0.2.0/CustomDerivative/R/validation.R |only CustomDerivative-0.2.0/CustomDerivative/README.md |only CustomDerivative-0.2.0/CustomDerivative/man/CustomDerivative.Rd | 313 ++-------- CustomDerivative-0.2.0/CustomDerivative/man/asian_call_payoff.Rd |only CustomDerivative-0.2.0/CustomDerivative/man/black_scholes_price.Rd |only CustomDerivative-0.2.0/CustomDerivative/man/down_and_out_call_payoff.Rd |only CustomDerivative-0.2.0/CustomDerivative/man/finite_difference_greeks.Rd |only CustomDerivative-0.2.0/CustomDerivative/man/payoff_helpers.Rd |only CustomDerivative-0.2.0/CustomDerivative/man/price_european_mc.Rd |only CustomDerivative-0.2.0/CustomDerivative/man/price_path_dependent_mc.Rd |only CustomDerivative-0.2.0/CustomDerivative/man/simulate_gbm_paths.Rd |only CustomDerivative-0.2.0/CustomDerivative/tests/testthat.R |only CustomDerivative-0.2.0/CustomDerivative/tests/testthat/test-legacy-api.R |only CustomDerivative-0.2.0/CustomDerivative/tests/testthat/test-pricing.R |only 25 files changed, 151 insertions(+), 239 deletions(-)
More information about CustomDerivative at CRAN
Permanent link
Title: An IMAP Client for R
Description: A session-based IMAP client that implements the full functionality of
the IMAP4rev1 protocol (RFC 3501), allowing virtually all e-mail operations to be
performed from within R, paving the way for e-mail data analysis.
Author: Allan Quadros [aut, cre] ,
Paul Smith [ctb],
Kurt Hornik [ctb]
Maintainer: Allan Quadros <allanvcq@gmail.com>
Diff between mRpostman versions 1.2.2 dated 2026-07-11 and 1.4.0 dated 2026-07-28
DESCRIPTION | 8 +++--- MD5 | 31 +++++++++++++++++++---- NAMESPACE | 4 +++ R/clean-fetch-results.R | 3 ++ R/clean-msg-text.R | 34 ++++++++++++++++++++++---- R/enron-sandbox.R |only R/ingest-maildir.R |only R/populate-sandbox.R |only R/sandbox-corpus.R |only README.md | 26 +++++++++++++++++++ build/vignette.rds |binary inst/doc/sandbox.R |only inst/doc/sandbox.Rmd |only inst/doc/sandbox.html |only inst/docker |only man/enron_sandbox.Rd |only man/ingest_maildir.Rd |only man/populate_sandbox.Rd |only man/sandbox_corpus.Rd |only tests/testthat/test-clean-msg-text-encoding.R |only tests/testthat/test-enron-header-date.R |only tests/testthat/test-sandbox-corpus.R |only vignettes/sandbox.Rmd |only 23 files changed, 92 insertions(+), 14 deletions(-)
Title: Grouped Hyper Data Frame
Description: To aggregate a hyper data frame, defined in the package 'spatstat.geom', according to a grouping structure. To facilitate downstream analysis based on a "grouped" hyper data frame. The author has retired from academic research. Accordingly, this package should not be considered a validated tool for use in peer-reviewed publications or as the basis for grant applications. Backward compatibility with user-code published in <doi:10.1093/bioinformatics/btaf430> is not maintained in versions >= 0.4.0 (June 2026) of this package. The authors of those publications are the appropriate contacts for reproducibility inquiries.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between groupedHyperframe versions 0.4.3 dated 2026-06-21 and 0.4.4 dated 2026-07-28
groupedHyperframe-0.4.3/groupedHyperframe/R/vectorlist.R |only groupedHyperframe-0.4.3/groupedHyperframe/data/Ki67.rda |only groupedHyperframe-0.4.3/groupedHyperframe/man/Ki67.Rd |only groupedHyperframe-0.4.3/groupedHyperframe/man/as.vectorlist.Rd |only groupedHyperframe-0.4.4/groupedHyperframe/DESCRIPTION | 10 +-- groupedHyperframe-0.4.4/groupedHyperframe/MD5 | 25 +++---- groupedHyperframe-0.4.4/groupedHyperframe/NAMESPACE | 8 -- groupedHyperframe-0.4.4/groupedHyperframe/R/0PACKAGE.R | 19 +---- groupedHyperframe-0.4.4/groupedHyperframe/R/aggregate.hyperframe.R | 2 groupedHyperframe-0.4.4/groupedHyperframe/R/aggregate2.R | 2 groupedHyperframe-0.4.4/groupedHyperframe/R/aug4gam.R | 6 - groupedHyperframe-0.4.4/groupedHyperframe/R/data_doc.R | 33 ---------- groupedHyperframe-0.4.4/groupedHyperframe/R/is_vectorlist.R |only groupedHyperframe-0.4.4/groupedHyperframe/build/partial.rdb |binary groupedHyperframe-0.4.4/groupedHyperframe/man/groupedHyperframe-package.Rd | 2 groupedHyperframe-0.4.4/groupedHyperframe/man/is.vectorlist.Rd | 2 16 files changed, 30 insertions(+), 79 deletions(-)
More information about groupedHyperframe at CRAN
Permanent link
Title: General-to-Specific (GETS) Modelling and Indicator Saturation
Methods
Description: Automated General-to-Specific (GETS) modelling of the mean and variance of a regression, and indicator saturation methods for detecting and testing for structural breaks in the mean, see Pretis, Reade and Sucarrat (2018) <doi:10.18637/jss.v086.i03> for an overview of the package. In advanced use, the estimator and diagnostics tests can be fully user-specified, see Sucarrat (2021) <doi:10.32614/RJ-2021-024>.
Author: Genaro Sucarrat [aut, cre] ,
Felix Pretis [aut],
James Reade [aut],
Jonas Kurle [ctb],
Moritz Schwarz [ctb]
Maintainer: Genaro Sucarrat <genaro.sucarrat@bi.no>
Diff between gets versions 0.38 dated 2024-07-14 and 0.40 dated 2026-07-28
gets-0.38/gets/man/as.arx.lm.Rd |only gets-0.40/gets/DESCRIPTION | 20 gets-0.40/gets/MD5 | 81 gets-0.40/gets/NAMESPACE | 5 gets-0.40/gets/NEWS | 36 gets-0.40/gets/R/gets-base-source.R | 105 gets-0.40/gets/R/gets-internal.R | 2 gets-0.40/gets/R/gets-isat-source.R | 2677 ++++++++++------ gets-0.40/gets/R/gets-larch-source.R | 66 gets-0.40/gets/R/gets-lm-source.R | 25 gets-0.40/gets/R/gets-logitx-source.R | 14 gets-0.40/gets/build/partial.rdb |binary gets-0.40/gets/data/hpdata.rda |binary gets-0.40/gets/data/infldata.rda |binary gets-0.40/gets/data/so2data.rda |binary gets-0.40/gets/data/sp500data.rda |binary gets-0.40/gets/inst/doc/introduction.Rnw | 17 gets-0.40/gets/inst/doc/introduction.pdf |binary gets-0.40/gets/inst/doc/user-defined-gets-and-isat.Rnw | 14 gets-0.40/gets/inst/doc/user-defined-gets-and-isat.pdf |binary gets-0.40/gets/man/ISMatricesLoop.Rd |only gets-0.40/gets/man/ISadditionalblocksearch.Rd |only gets-0.40/gets/man/ISblocksFun.Rd |only gets-0.40/gets/man/arx.Rd | 8 gets-0.40/gets/man/as.arx.Rd |only gets-0.40/gets/man/as.isat.Rd |only gets-0.40/gets/man/as.lm.Rd | 2 gets-0.40/gets/man/blocksFun.Rd | 2 gets-0.40/gets/man/coef.larch.Rd | 2 gets-0.40/gets/man/create.ISmatrices.Rd |only gets-0.40/gets/man/diagnostics.Rd | 2 gets-0.40/gets/man/distorttest.Rd | 4 gets-0.40/gets/man/distorttestboot.Rd | 4 gets-0.40/gets/man/gets-package.Rd | 10 gets-0.40/gets/man/gets.larch.Rd | 10 gets-0.40/gets/man/getsm.Rd | 6 gets-0.40/gets/man/hpdata.Rd | 21 gets-0.40/gets/man/isat.Rd | 44 gets-0.40/gets/man/larch.Rd | 4 gets-0.40/gets/man/regressorsVariance.Rd | 8 gets-0.40/gets/tests |only gets-0.40/gets/vignettes/introduction.Rnw | 17 gets-0.40/gets/vignettes/user-defined-gets-and-isat.Rnw | 14 43 files changed, 2036 insertions(+), 1184 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-18 0.8.1
Title: Tools and Statistical Procedures in Plant Science
Description: The 'inti' package is part of the 'inkaverse' project for developing
different procedures and tools used in plant science and experimental designs.
The mean aim of the package is to support researchers during the planning of
experiments and data collection (tarpuy()), data analysis and graphics (yupana())
, and scientific writing.
Learn more about the 'inkaverse' project at <https://inkaverse.com/>.
Author: Flavio Lozano-Isla [aut, cre] ,
Yoel Diaz-Saucedo [aut] ,
Maria Belen Kistner [ctb] ,
QuipoLab [ctb],
Inkaverse [cph]
Maintainer: Flavio Lozano-Isla <flozanoisla@gmail.com>
Diff between inti versions 0.7.1 dated 2026-06-22 and 0.7.2 dated 2026-07-28
inti-0.7.1/inti/inst/extdata/_extensions/scihub/ReadMe.qmd |only inti-0.7.1/inti/inst/extdata/_extensions/scihub/design |only inti-0.7.1/inti/inst/extdata/_extensions/scihub/files/images |only inti-0.7.1/inti/inst/extdata/_extensions/scihub/manuscript/Figure_1.jpg |only inti-0.7.2/inti/DESCRIPTION | 8 inti-0.7.2/inti/MD5 | 72 - inti-0.7.2/inti/NEWS.md | 9 inti-0.7.2/inti/R/design_augmented.R | 555 +++++--- inti-0.7.2/inti/R/design_split.R | 36 inti-0.7.2/inti/R/design_split_rcbd.R | 64 inti-0.7.2/inti/R/plot_augmented_design.R | 631 ++++++++- inti-0.7.2/inti/R/plot_split_rcbd_design.R | 658 ++++++++-- inti-0.7.2/inti/R/plot_standard_design.R | 623 ++++++--- inti-0.7.2/inti/R/rticle.R | 197 ++ inti-0.7.2/inti/R/tarpuy_design.R | 19 inti-0.7.2/inti/R/tarpuy_plex.R | 18 inti-0.7.2/inti/R/tarpuy_plotdesign.R | 269 +++- inti-0.7.2/inti/R/utils.R | 46 inti-0.7.2/inti/R/yupana_mvr.R | 14 inti-0.7.2/inti/README.md | 15 inti-0.7.2/inti/build/partial.rdb |binary inti-0.7.2/inti/build/vignette.rds |binary inti-0.7.2/inti/inst/CITATION | 75 - inti-0.7.2/inti/inst/doc/apps.html | 2 inti-0.7.2/inti/inst/extdata/_extensions/scihub/_quarto.yml |only inti-0.7.2/inti/inst/extdata/_extensions/scihub/analysis.qmd | 21 inti-0.7.2/inti/inst/extdata/_extensions/scihub/article.qmd | 23 inti-0.7.2/inti/inst/extdata/_extensions/scihub/files/phenomics.qmd |only inti-0.7.2/inti/inst/extdata/_extensions/scihub/index.qmd |only inti-0.7.2/inti/inst/extdata/_extensions/scihub/labels.qmd |only inti-0.7.2/inti/inst/extdata/_extensions/scihub/library |only inti-0.7.2/inti/inst/extdata/_extensions/scihub/manuscript/Figure-1.jpg |only inti-0.7.2/inti/inst/extdata/_extensions/scihub/scihub.proj | 8 inti-0.7.2/inti/inst/tarpuy/rsconnect/shinyapps.io/inkaverse/tarpuy.dcf | 2 inti-0.7.2/inti/inst/tarpuy/server.R | 297 +++- inti-0.7.2/inti/inst/tarpuy/ui.R | 214 +-- inti-0.7.2/inti/inst/yupana/rsconnect/shinyapps.io/inkaverse/yupana.dcf | 2 inti-0.7.2/inti/man/design_augmented.Rd | 12 inti-0.7.2/inti/man/plot_augmented_design.Rd | 139 +- inti-0.7.2/inti/man/plot_split_rcbd_design.Rd | 126 + inti-0.7.2/inti/man/plot_standard_design.Rd | 249 +-- inti-0.7.2/inti/man/tarpuy_plotdesign.Rd | 124 + 42 files changed, 3348 insertions(+), 1180 deletions(-)
Title: Conduct Simulation Study of Bayesian Optimal Interval Design
with BOIN-ET Family
Description: Bayesian optimal interval based on both efficacy and toxicity outcomes (BOIN-ET) design is a model-assisted oncology phase I/II trial design, aiming to establish an optimal biological dose accounting for efficacy and toxicity in the framework of dose-finding. Some extensions of BOIN-ET design are also available to allow for time-to-event efficacy and toxicity outcomes based on cumulative and pending data (time-to-event BOIN-ET: TITE-BOIN-ET), ordinal graded efficacy and toxicity outcomes (generalized BOIN-ET: gBOIN-ET), and their combination (TITE-gBOIN-ET). 'boinet' is a package to implement the BOIN-ET design family and supports the conduct of simulation studies to assess operating characteristics of BOIN-ET, TITE-BOIN-ET, gBOIN-ET, and TITE-gBOIN-ET, where users can choose design parameters in flexible and straightforward ways depending on their own application.
Author: Yusuke Yamaguchi [aut, cre],
Kentaro Takeda [aut]
Maintainer: Yusuke Yamaguchi <yamagubed@gmail.com>
Diff between boinet versions 1.5.0 dated 2025-10-26 and 1.6.0 dated 2026-07-28
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