Title: Fit Probability Models to Forensic Survey Data
Description: Fits probability models to P- and S-type count data arising
from forensic surveys of clothing for the background presence of glass,
paint, and related trace material. Built-in models include zeta,
zero-inflated zeta, and logarithmic distributions, with a public extension
interface for additional models. Inference is available by maximum
likelihood, parametric Bayesian methods, the ordinary nonparametric
bootstrap, and Rubin's Bayesian Bootstrap. The clothing-survey setting is
described by Coulson, Buckleton, Gummer, and Triggs (2001)
<doi:10.1016/S1355-0306(01)71847-3>.
Author: James Curran [aut, cre]
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between fitPS versions 1.0.6 dated 2026-06-10 and 1.1.4 dated 2026-08-26
fitPS-1.0.6/fitPS/R/add.R |only fitPS-1.0.6/fitPS/R/as.data.frame.psData.R |only fitPS-1.0.6/fitPS/R/compareSurveys.R |only fitPS-1.0.6/fitPS/R/compareSurveysLRT.R |only fitPS-1.0.6/fitPS/R/fitCompare.R |only fitPS-1.0.6/fitPS/R/fitDist.R |only fitPS-1.0.6/fitPS/R/fitDistBayes.R |only fitPS-1.0.6/fitPS/R/fitDistBayesIntegrate.R |only fitPS-1.0.6/fitPS/R/fitZIDist.R |only fitPS-1.0.6/fitPS/R/fitZIDistBayes.R |only fitPS-1.0.6/fitPS/R/fitdistLaplace.R |only fitPS-1.0.6/fitPS/R/fitlogDist.R |only fitPS-1.0.6/fitPS/R/fitted.psFit.R |only fitPS-1.0.6/fitPS/R/internalfunctions.R |only fitPS-1.0.6/fitPS/R/logLik.psFit.R |only fitPS-1.0.6/fitPS/R/mean.psData.R |only fitPS-1.0.6/fitPS/R/operators.psData.R |only fitPS-1.0.6/fitPS/R/print.psData.R |only fitPS-1.0.6/fitPS/R/print.psFit.R |only fitPS-1.0.6/fitPS/R/profileLikelihoodZIZ.R |only fitPS-1.0.6/fitPS/R/rZIzeta.R |only fitPS-1.0.6/fitPS/R/rzeta.R |only fitPS-1.0.6/fitPS/R/summary.psFit.R |only fitPS-1.0.6/fitPS/R/var.fitPS.R |only 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fitPS-1.1.4/fitPS/R/credint.R | 413 +++- fitPS-1.1.4/fitPS/R/deprecation.R |only fitPS-1.1.4/fitPS/R/fit.R |only fitPS-1.1.4/fitPS/R/jsd.R | 7 fitPS-1.1.4/fitPS/R/makePrior.R | 26 fitPS-1.1.4/fitPS/R/model-logarithmic.R |only fitPS-1.1.4/fitPS/R/model-zeta.R |only fitPS-1.1.4/fitPS/R/model-ziz.R |only fitPS-1.1.4/fitPS/R/modelBayesContract.R |only fitPS-1.1.4/fitPS/R/modelComparison.R |only fitPS-1.1.4/fitPS/R/numerical-integration-utils.R |only fitPS-1.1.4/fitPS/R/plot.psBootstrap.R |only fitPS-1.1.4/fitPS/R/plot.psPosterior.R |only fitPS-1.1.4/fitPS/R/plotPosterior.R | 316 ++- fitPS-1.1.4/fitPS/R/plotUncertainty.R |only fitPS-1.1.4/fitPS/R/posterior-engine-importance.R |only fitPS-1.1.4/fitPS/R/posterior-engine-laplace.R |only fitPS-1.1.4/fitPS/R/posterior-engine-mcmc.R |only fitPS-1.1.4/fitPS/R/posterior-engine-numerical.R |only fitPS-1.1.4/fitPS/R/posteriorInflation.R |only fitPS-1.1.4/fitPS/R/posteriorProbs.R |only fitPS-1.1.4/fitPS/R/predict.psFit.R | 298 ++- 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Title: Microsoft Finance Time Series Forecasting Framework
Description: Automated time series forecasting developed by Microsoft Finance. The Microsoft Finance Time
Series Forecasting Framework, aka Finn, can be used to forecast any component of the income
statement, balance sheet, or any other area of interest by finance. Any numerical quantity over time,
Finn can be used to forecast it. While it can be applied outside of the finance domain, Finn was built
to meet the needs of financial analysts to better forecast their businesses within a company, and has
a lot of built in features that are specific to the needs of financial forecasters. Happy forecasting!
Author: Mike Tokic [aut, cre] ,
Aadharsh Kannan [aut]
Maintainer: Mike Tokic <mftokic@gmail.com>
Diff between finnts versions 0.6.0 dated 2025-09-04 and 0.7.0 dated 2026-08-26
finnts-0.6.0/finnts/tests/testthat/test-multistep_horizon.R |only finnts-0.7.0/finnts/DESCRIPTION | 27 finnts-0.7.0/finnts/MD5 | 215 - finnts-0.7.0/finnts/NAMESPACE | 44 finnts-0.7.0/finnts/NEWS.md | 93 finnts-0.7.0/finnts/R/agent_ask.R |only finnts-0.7.0/finnts/R/agent_eda.R |only finnts-0.7.0/finnts/R/agent_info.R |only finnts-0.7.0/finnts/R/agent_iterate_forecast.R |only finnts-0.7.0/finnts/R/agent_run.R |only finnts-0.7.0/finnts/R/agent_summarize_models.R |only finnts-0.7.0/finnts/R/agent_update_forecast.R |only finnts-0.7.0/finnts/R/arima_fast_model.R |only finnts-0.7.0/finnts/R/chronos2_model.R |only finnts-0.7.0/finnts/R/chronos_bolt_base_model.R |only finnts-0.7.0/finnts/R/chronos_bolt_tiny_model.R |only finnts-0.7.0/finnts/R/chronos_controller.R |only finnts-0.7.0/finnts/R/ensemble_models.R | 33 finnts-0.7.0/finnts/R/feature_selection.R | 44 finnts-0.7.0/finnts/R/final_models.R | 1133 +++--- finnts-0.7.0/finnts/R/forecast_time_series.R | 11 finnts-0.7.0/finnts/R/hierarchy.R | 639 ++- finnts-0.7.0/finnts/R/input_checks.R | 172 finnts-0.7.0/finnts/R/models.R | 266 + finnts-0.7.0/finnts/R/multistep_cubist.R | 76 finnts-0.7.0/finnts/R/multistep_glmnet.R | 77 finnts-0.7.0/finnts/R/multistep_helper.R | 164 finnts-0.7.0/finnts/R/multistep_mars.R | 129 finnts-0.7.0/finnts/R/multistep_svm_poly.R | 77 finnts-0.7.0/finnts/R/multistep_svm_rbf.R | 77 finnts-0.7.0/finnts/R/multistep_xgboost.R | 154 finnts-0.7.0/finnts/R/optional_dependencies.R |only finnts-0.7.0/finnts/R/parallel_util.R | 79 finnts-0.7.0/finnts/R/prep_data.R | 480 +- finnts-0.7.0/finnts/R/prep_models.R | 269 + finnts-0.7.0/finnts/R/project_info.R |only finnts-0.7.0/finnts/R/read_write_data.R | 231 + finnts-0.7.0/finnts/R/run_info.R | 128 finnts-0.7.0/finnts/R/timegpt_model.R |only finnts-0.7.0/finnts/R/timesfm_model.R |only finnts-0.7.0/finnts/R/train_models.R | 485 +- finnts-0.7.0/finnts/R/utility.R | 78 finnts-0.7.0/finnts/README.md | 62 finnts-0.7.0/finnts/build/vignette.rds |binary 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finnts-0.7.0/finnts/inst/doc/forecast-components.html | 7 finnts-0.7.0/finnts/inst/doc/forecasting-genai.R |only finnts-0.7.0/finnts/inst/doc/forecasting-genai.Rmd |only finnts-0.7.0/finnts/inst/doc/forecasting-genai.html |only finnts-0.7.0/finnts/inst/doc/hierarchical-forecasting.Rmd | 2 finnts-0.7.0/finnts/inst/doc/hierarchical-forecasting.html | 8 finnts-0.7.0/finnts/inst/doc/models-used-in-finnts.R | 7 finnts-0.7.0/finnts/inst/doc/models-used-in-finnts.Rmd | 19 finnts-0.7.0/finnts/inst/doc/models-used-in-finnts.html | 36 finnts-0.7.0/finnts/inst/doc/parallel-processing.R | 2 finnts-0.7.0/finnts/inst/doc/parallel-processing.Rmd | 8 finnts-0.7.0/finnts/inst/doc/parallel-processing.html | 29 finnts-0.7.0/finnts/man/arima_fast_model.Rd |only finnts-0.7.0/finnts/man/arima_fast_model_fit_impl.Rd |only finnts-0.7.0/finnts/man/arima_fast_model_predict_impl.Rd |only finnts-0.7.0/finnts/man/ask_agent.Rd |only finnts-0.7.0/finnts/man/chronos2_model.Rd |only 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finnts-0.7.0/finnts/man/print.arima_fast_model.Rd |only finnts-0.7.0/finnts/man/print.chronos2_model.Rd |only finnts-0.7.0/finnts/man/print.chronos_bolt_base_model.Rd |only finnts-0.7.0/finnts/man/print.chronos_bolt_tiny_model.Rd |only finnts-0.7.0/finnts/man/print.timegpt_model.Rd |only finnts-0.7.0/finnts/man/print.timesfm_model.Rd |only finnts-0.7.0/finnts/man/set_agent_info.Rd |only finnts-0.7.0/finnts/man/set_project_info.Rd |only finnts-0.7.0/finnts/man/set_run_info.Rd | 16 finnts-0.7.0/finnts/man/timegpt_model.Rd |only finnts-0.7.0/finnts/man/timegpt_model_fit_impl.Rd |only finnts-0.7.0/finnts/man/timegpt_model_predict_impl.Rd |only finnts-0.7.0/finnts/man/timesfm_model.Rd |only finnts-0.7.0/finnts/man/timesfm_model_fit_impl.Rd |only finnts-0.7.0/finnts/man/timesfm_model_predict_impl.Rd |only finnts-0.7.0/finnts/man/train_models.Rd | 10 finnts-0.7.0/finnts/man/update.arima_fast_model.Rd |only finnts-0.7.0/finnts/man/update.chronos2_model.Rd |only finnts-0.7.0/finnts/man/update.chronos_bolt_base_model.Rd |only finnts-0.7.0/finnts/man/update.chronos_bolt_tiny_model.Rd |only finnts-0.7.0/finnts/man/update.timegpt_model.Rd |only finnts-0.7.0/finnts/man/update.timesfm_model.Rd |only finnts-0.7.0/finnts/man/update_forecast.Rd |only finnts-0.7.0/finnts/tests/testthat.R | 60 finnts-0.7.0/finnts/tests/testthat/helper-test-fixtures.R |only finnts-0.7.0/finnts/tests/testthat/test-agent-chat-serialization.R |only finnts-0.7.0/finnts/tests/testthat/test-agent.R |only finnts-0.7.0/finnts/tests/testthat/test-arima-fast.R |only finnts-0.7.0/finnts/tests/testthat/test-best_models.R |only finnts-0.7.0/finnts/tests/testthat/test-chronos.R |only finnts-0.7.0/finnts/tests/testthat/test-clamp_negative_target.R |only finnts-0.7.0/finnts/tests/testthat/test-final_models.R |only finnts-0.7.0/finnts/tests/testthat/test-finalize_run.R |only finnts-0.7.0/finnts/tests/testthat/test-foundation-model-credentials.R |only finnts-0.7.0/finnts/tests/testthat/test-hash_data.R |only finnts-0.7.0/finnts/tests/testthat/test-hierarchical.R | 1886 +++++++++- finnts-0.7.0/finnts/tests/testthat/test-input_checks.R |only finnts-0.7.0/finnts/tests/testthat/test-load_run_results.R |only finnts-0.7.0/finnts/tests/testthat/test-multistep-daily-regression.R |only finnts-0.7.0/finnts/tests/testthat/test-multistep-date-types.R |only finnts-0.7.0/finnts/tests/testthat/test-multistep.R |only finnts-0.7.0/finnts/tests/testthat/test-prep_data.R |only finnts-0.7.0/finnts/tests/testthat/test-summarize-models-feature-selection.R |only finnts-0.7.0/finnts/tests/testthat/test-summarize_models.R |only finnts-0.7.0/finnts/tests/testthat/test-timegpt.R |only finnts-0.7.0/finnts/tests/testthat/test-timesfm.R |only finnts-0.7.0/finnts/tests/testthat/test-undifference.R |only finnts-0.7.0/finnts/tests/testthat/test-vip-optional.R |only finnts-0.7.0/finnts/vignettes/ai-agent.Rmd |only finnts-0.7.0/finnts/vignettes/back-testing-and-hyperparameter-tuning.Rmd | 2 finnts-0.7.0/finnts/vignettes/feature-engineering.Rmd | 17 finnts-0.7.0/finnts/vignettes/feature-selection.Rmd | 20 finnts-0.7.0/finnts/vignettes/finnts.Rmd | 145 finnts-0.7.0/finnts/vignettes/forecast-components.Rmd | 2 finnts-0.7.0/finnts/vignettes/forecasting-genai.Rmd |only finnts-0.7.0/finnts/vignettes/hierarchical-forecasting.Rmd | 2 finnts-0.7.0/finnts/vignettes/models-used-in-finnts.Rmd | 19 finnts-0.7.0/finnts/vignettes/parallel-processing.Rmd | 8 153 files changed, 6361 insertions(+), 1938 deletions(-)
Title: Large Language Model (LLM) Tools for Psychological Text Analysis
Description: A collection of large language model (LLM) text analysis methods
designed with psychological data in mind. Currently, LLMing (aka "lemming")
includes a text anomaly detection method based on the angle-based subspace
approach described by Zhang, Lin, and Karim (2015) and a text generation method.
<doi:10.1016/j.ress.2015.05.025>.
Author: Lindley Slipetz [aut, cre],
Teague Henry [aut],
Siqi Sun [ctb]
Maintainer: Lindley Slipetz <ddj6tu@virginia.edu>
Diff between LLMing versions 1.2.1 dated 2026-03-27 and 1.3.0 dated 2026-08-26
DESCRIPTION | 14 MD5 | 31 - NAMESPACE | 2 NEWS.md | 5 R/clean_texts.R |only R/construct_validity.R |only R/embed.R | 948 ++++++++++++++++++------------------- R/text_datagen.R | 977 +++++++++++++++++++++++++++++++------- R/vector_SNN.R | 1 README.md | 15 build/partial.rdb |binary inst/python/embed.py |only inst/python/text_datagen.py | 1116 ++++++++++++++++++++++++++++++-------------- man/LLMing-package.Rd | 1 man/clean_texts.Rd |only man/construct_validity.Rd |only man/embed.Rd | 111 +--- man/text_datagen.Rd | 162 +++--- tests |only 19 files changed, 2198 insertions(+), 1185 deletions(-)
Title: Graphical Multiple Comparison Procedures
Description: Multiple comparison procedures (MCPs) control the familywise error
rate in clinical trials. Graphical MCPs include many commonly used
procedures as special cases; see Bretz et al. (2011)
<doi:10.1002/bimj.201000239>, Lu (2016) <doi:10.1002/sim.6985>, and Xi et
al. (2017) <doi:10.1002/bimj.201600233>. This package is a low-dependency
implementation of graphical MCPs which allow mixed types of tests. It also
includes power simulations and visualization of graphical MCPs.
Author: Dong Xi [aut, cre],
Ethan Brockmann [aut],
Gilead Sciences, Inc. [cph, fnd]
Maintainer: Dong Xi <dong.xi1@gilead.com>
Diff between graphicalMCP versions 0.2.9 dated 2026-03-21 and 0.3.0 dated 2026-08-26
DESCRIPTION | 15 MD5 | 251 + NAMESPACE | 110 NEWS.md | 142 R/adjust_p.R | 408 +- R/adjust_weights.R | 414 +- R/adjust_weights_parametric_util.R | 314 +- R/as_graph.R | 272 - R/edge_pairs.R | 66 R/example_graphs.R | 884 +++--- R/graph_calculate_power.R | 968 +++--- R/graph_create.R | 453 +-- R/graph_generate_weights.R | 264 - R/graph_rejection_orderings.R | 240 - R/graph_test_closure.R | 900 +++--- R/graph_test_shortcut.R | 550 +-- R/graph_test_shortcut_gsd.R |only R/graph_update.R | 362 +- R/graphicalMCP-package.R | 4 R/gs_boundaries.R |only R/gs_corr.R |only R/plot.initial_graph.R | 476 +-- R/plot.updated_graph.R | 110 R/power_tests.R | 152 - R/print.graph_report.R | 580 ++-- R/print.gsd_graph_report.R |only R/print.initial_graph.R | 196 - R/print.power_report.R | 485 +-- R/print.updated_graph.R | 226 - R/repeated_p.R |only R/sequential_p.R |only R/spending_functions.R |only R/test_power_input_val.R | 430 +-- R/test_values.R | 322 +- README.md | 198 - build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 20 inst/WORDLIST | 206 - inst/doc/closed-testing.R | 630 ++-- inst/doc/closed-testing.Rmd | 854 ++--- inst/doc/closed-testing.html | 2455 ++++++++--------- inst/doc/glossary.R | 12 inst/doc/glossary.Rmd | 134 inst/doc/glossary.html | 998 +++--- inst/doc/graph-examples.R | 1083 +++---- inst/doc/graph-examples.Rmd | 1305 ++++----- inst/doc/graph-examples.html | 2440 ++++++++--------- inst/doc/graphicalMCP.R | 126 inst/doc/graphicalMCP.Rmd | 216 - inst/doc/graphicalMCP.html | 1140 +++---- inst/doc/group-sequential-testing.R |only inst/doc/group-sequential-testing.Rmd |only inst/doc/group-sequential-testing.html |only inst/doc/gsd-validation.R |only inst/doc/gsd-validation.Rmd |only inst/doc/gsd-validation.html |only inst/doc/internal-validation.R | 1062 +++---- inst/doc/internal-validation.Rmd | 1166 ++++---- inst/doc/internal-validation.html | 1007 +++---- inst/doc/shortcut-testing.R | 397 +- inst/doc/shortcut-testing.Rmd | 588 ++-- inst/doc/shortcut-testing.html | 1949 ++++++------- inst/references.bib | 520 +-- man/adjust_p.Rd | 216 - man/adjust_weights.Rd | 292 +- man/adjust_weights_parametric_util.Rd | 242 - man/as_graph.Rd | 156 - man/edge_pairs.Rd | 40 man/example_graphs.Rd | 370 +- man/graph_calculate_power.Rd | 412 +- man/graph_create.Rd | 266 - man/graph_generate_weights.Rd | 146 - man/graph_rejection_orderings.Rd | 146 - man/graph_test_closure.Rd | 374 +- man/graph_test_fast.Rd | 94 man/graph_test_shortcut.Rd | 216 - man/graph_test_shortcut_gsd.Rd |only man/graph_update.Rd | 186 - man/graphicalMCP-package.Rd | 71 man/gs_boundaries.Rd |only man/gs_corr.Rd |only man/gsd_boundary_table.Rd |only man/gsd_input_val.Rd |only man/gsd_test.Rd |only man/gsd_test_values_details.Rd |only man/gsd_test_values_look_back.Rd |only man/input_val.Rd | 164 - man/plot.initial_graph.Rd | 308 +- man/plot.updated_graph.Rd | 170 - man/print.graph_report.Rd | 104 man/print.gsd_graph_report.Rd |only man/print.initial_graph.Rd | 102 man/print.power_report.Rd | 159 - man/print.updated_graph.Rd | 114 man/repeated_p.Rd |only man/sequential_p.Rd |only man/spending_functions.Rd |only man/spending_with_time.Rd |only man/spending_wt.Rd |only man/test_values.Rd | 170 - tests/testthat.R | 24 tests/testthat/Rplots.pdf |only tests/testthat/_snaps/print.graph_report.md | 3010 ++++++++++----------- tests/testthat/_snaps/print.initial_graph.md | 92 tests/testthat/_snaps/print.power_report.md | 830 ++--- tests/testthat/_snaps/print.updated_graph.md | 444 +-- tests/testthat/test-adjust_weights.R | 140 tests/testthat/test-as_graph.R | 28 tests/testthat/test-edge_pairs.R | 6 tests/testthat/test-example_graphs.R | 614 ++-- tests/testthat/test-graph_calculate_power.R | 308 +- tests/testthat/test-graph_create.R | 418 +- tests/testthat/test-graph_generate_weights.R | 86 tests/testthat/test-graph_test_closure.R | 894 +++--- tests/testthat/test-graph_test_shortcut.R | 374 +- tests/testthat/test-graph_test_shortcut_gsd.R |only tests/testthat/test-graph_update.R | 160 - tests/testthat/test-gs_boundaries.R |only tests/testthat/test-gs_corr.R |only tests/testthat/test-plot.initial_graph.R | 48 tests/testthat/test-plot.updated_graph.R | 48 tests/testthat/test-power_tests.R | 224 - tests/testthat/test-print.graph_report.R | 234 - tests/testthat/test-print.initial_graph.R | 26 tests/testthat/test-print.power_report.R | 168 - tests/testthat/test-print.updated_graph.R | 53 tests/testthat/test-repeated_p.R |only tests/testthat/test-sequential_p.R |only tests/testthat/test-spending_functions.R |only tests/testthat/test-test_values.R |only vignettes/closed-testing.Rmd | 854 ++--- vignettes/glossary.Rmd | 134 vignettes/graph-examples.Rmd | 1305 ++++----- vignettes/graphicalMCP.Rmd | 216 - vignettes/group-sequential-testing.Rmd |only vignettes/gsd-validation.Rmd |only vignettes/internal-validation.Rmd | 1166 ++++---- vignettes/internal-validation_bonferroni.csv | 2002 ++++++------- vignettes/internal-validation_hochberg.csv | 2002 ++++++------- vignettes/internal-validation_mixed.csv | 2002 ++++++------- vignettes/internal-validation_parametric-mixed.csv | 2002 ++++++------- vignettes/internal-validation_parametric.csv | 2002 ++++++------- vignettes/internal-validation_simes.csv | 2002 ++++++------- vignettes/shortcut-testing.Rmd | 588 ++-- 145 files changed, 28640 insertions(+), 28482 deletions(-)
Title: Mining Rigs for Problems in the Subset Sum Family
Description: Specialized solvers for combinatorial optimization problems in the Subset Sum family. The solvers differ from the mainstream in the options of (i) restricting subset size, (ii) bounding subset elements, (iii) mining real-value multisets with predefined subset sum errors, (iv) finding one or more subsets in limited time. A novel algorithm for mining the one-dimensional Subset Sum induced algorithms for the multi-Subset Sum and the multidimensional Subset Sum. The multi-threaded framework for the latter offers exact algorithms to the multidimensional Knapsack and the Generalized Assignment problems. Historical updates include (a) renewed implementation of the multi-Subset Sum, multidimensional Knapsack and Generalized Assignment solvers; (b) availability of bounding solution space in the multidimensional Subset Sum; (c) fundamental data structure and architectural changes for enhanced cache locality and better chance of SIMD vectorization; (d) option of mapping floating-point instance to [...truncated...]
Author: Charlie Wusuo Liu [aut, cre]
Maintainer: Charlie Wusuo Liu <liuwusuo@gmail.com>
Diff between FLSSS versions 9.2.8 dated 2025-06-22 and 9.2.9 dated 2026-08-26
DESCRIPTION | 10 +++++----- MD5 | 6 +++--- src/header/singleDstack.hpp | 1 + src/legacy/singleDstack.hpp | 1 + 4 files changed, 10 insertions(+), 8 deletions(-)
Title: Download and Extract BlueTopo Bathymetry with Terra
Description: Discovers, downloads, verifies, and opens bathymetry assets from
the National Oceanic and Atmospheric Administration (NOAA) BlueTopo product
for user supplied areas of interest. The package keeps source files intact
by default, uses 'terra' for spatial data access, supports explicit
native-resolution selection policies, and records provenance for
reproducible extraction workflows. It accesses the NOAA BlueTopo web
service at <https://noaa-ocs-nationalbathymetry-pds.s3.amazonaws.com/> and
references product documentation at
<https://nauticalcharts.noaa.gov/data/bluetopo.html>.
Author: Elvin Cordero [aut, cre, cph]
Maintainer: Elvin Cordero <elvin.cordero@seamountgeo.com>
Diff between bluertopo versions 0.0.1 dated 2026-08-04 and 0.0.2 dated 2026-08-26
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS.md | 6 ++++++ R/cache.R | 25 ++++++++++++++++++++++++- README.md | 8 ++++++-- tests/testthat/test-cache.R | 3 +-- 6 files changed, 45 insertions(+), 13 deletions(-)
Title: Interface to 'the CAVD DataSpace'
Description: Provides a convenient API interface to access immunological data
within 'the CAVD DataSpace'(<https://dataspace.cavd.org>), a data sharing
and discovery tool that facilitates exploration of HIV immunological data
from pre-clinical and clinical HIV vaccine studies.
Author: Ju Yeong Kim [aut],
Sean Hughes [rev],
Jason Taylor [aut, cre],
Helen Miller [aut],
Kellie MacPhee [rev],
CAVD DataSpace [cph]
Maintainer: Jason Taylor <jmtaylor@fredhutch.org>
Diff between DataSpaceR versions 1.0.1 dated 2026-08-04 and 1.0.2 dated 2026-08-26
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 5 +++++ R/DataSpaceConnection.R | 6 +++--- R/DataSpaceStudies.R | 23 ++++++++++++----------- build/vignette.rds |binary tests/testthat/test-studies-groups.R | 17 ++++++++++++++--- 7 files changed, 43 insertions(+), 26 deletions(-)
Title: A Graphical User Interface for Antitrust and Trade Practitioners
Description: A graphical user interface for simulating the effects of mergers, tariffs, and quotas under an
assortment of different economic models. The interface is powered by the 'Shiny' web application framework from
'RStudio'.
Author: Charles Taragin [aut, cre],
Kenneth Rios [aut],
Paulette Wolak [aut]
Maintainer: Charles Taragin <ctaragin+competitiontoolbox@gmail.com>
Diff between competitiontoolbox versions 0.7.1 dated 2022-08-25 and 0.7.4 dated 2026-08-26
competitiontoolbox-0.7.1/competitiontoolbox/inst/ct_shiny/www/emergency.pdf |only competitiontoolbox-0.7.1/competitiontoolbox/inst/ct_shiny/www/health.pdf |only competitiontoolbox-0.7.4/competitiontoolbox/DESCRIPTION | 22 competitiontoolbox-0.7.4/competitiontoolbox/MD5 | 49 competitiontoolbox-0.7.4/competitiontoolbox/NAMESPACE | 7 competitiontoolbox-0.7.4/competitiontoolbox/R/ct_shiny.R | 2 competitiontoolbox-0.7.4/competitiontoolbox/build/partial.rdb |binary competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/Details/mergersNoPurch.R | 20 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/Details/tradeNoPurch.R | 20 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/Diagnostics/mergersDiag.R | 6 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/Diagnostics/tradeDiag.R | 2 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/Inputs/mergersInputs.R | 2 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/Inputs/reactiveInputs.R | 109 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/Inputs/tradeInputs.R | 2 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/Output/mergersOutput.R | 64 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/Output/tradeOutput.R | 40 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/R/mergersTemplateCode.R | 81 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/R/modelRegistry.R |only competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/R/tradeTemplateCode.R | 48 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/Simulations/mergersSims.R | 224 - competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/Simulations/tradeSims.R | 250 - competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/Summary/mergersSummary.R | 31 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/Summary/tradeSummary.R | 7 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/rsconnect/shinyapps.io/daag/ct_shiny.dcf | 6 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/server.R | 9 competitiontoolbox-0.7.4/competitiontoolbox/inst/ct_shiny/ui.R | 1752 ++++------ competitiontoolbox-0.7.4/competitiontoolbox/tests |only 27 files changed, 1065 insertions(+), 1688 deletions(-)
More information about competitiontoolbox at CRAN
Permanent link
Title: Data from Japan Meteorological Agency
Description: Includes climate data from Japan Meteorological Agency ('JMA') <https://www.jma.go.jp/jma/indexe.html>.
Can download climate data from 'JMA'.
Author: Toshikazu Matsumura [aut, cre]
Maintainer: Toshikazu Matsumura <matutosi@gmail.com>
Diff between clidatajp versions 0.5.2 dated 2023-03-04 and 0.5.3 dated 2026-08-26
DESCRIPTION | 15 +- MD5 | 40 +++-- NAMESPACE | 20 ++ NEWS.md | 24 ++- R/data.R | 115 ++++++++++++++++- R/download_detail.R |only R/wi_ci.R | 4 README.md | 34 ++++- build/vignette.rds |binary data/climate_jp_full.rda |only data/mean_cli.rda |only data/station_jp_full.rda |only inst/WORDLIST | 69 +++++++++- inst/doc/clidatajp.R | 112 ++++++++-------- inst/doc/clidatajp.html | 277 ++++++++++++++++++++--------------------- man/climate_jp_full.Rd |only man/detail_colnames.Rd |only man/detail_url.Rd |only man/download_detail.Rd |only man/download_prec_no.Rd |only man/mean_cli.Rd |only man/station_jp.Rd | 4 man/station_jp_full.Rd |only man/wi.Rd | 4 tests/spelling.R | 6 tests/testthat/test-detail.R |only tests/testthat/test-download.R | 2 27 files changed, 488 insertions(+), 238 deletions(-)
Title: 'Yandex Clickhouse' Interface for R with Basic 'dplyr' Support
Description: 'Yandex Clickhouse' (<https://clickhouse.com/>) is a high-performance relational column-store database to enable
big data exploration and 'analytics' scaling to petabytes of data. Methods are
provided that enable working with 'Yandex Clickhouse' databases via
'DBI' methods and using 'dplyr'/'dbplyr' idioms.
Author: Christian Hotz-Behofsits [aut, cre],
Daniel Winkler [aut],
Luca Rauchenberger [aut],
Peter Knaus [aut],
Clemens Danninger [aut],
Daria Yudaeva [aut],
Simon Stiebellehner [aut],
Dan Egnor [aut],
Vlad Losev [aut],
Keith Ray [aut],
Zhanyong Wan [aut],
M [...truncated...]
Maintainer: Christian Hotz-Behofsits <christian.hotz-behofsits@wu.ac.at>
Diff between RClickhouse versions 0.6.11 dated 2026-06-23 and 0.6.12 dated 2026-08-26
DESCRIPTION | 6 +++--- MD5 | 5 +++-- inst/include/RClickhouse_RcppExports.h |only src/vendor/clickhouse-cpp/clickhouse/base/compressed.cpp | 1 + 4 files changed, 7 insertions(+), 5 deletions(-)
Title: Optimal Binning and Weight of Evidence Framework for Modeling
Description: High-performance implementation of 37 optimal binning algorithms
(16 categorical, 21 numerical) for Weight of Evidence ('WoE') transformation,
credit scoring, and risk modeling. Includes advanced methods such as Mixed
Integer Linear Programming ('MILP'), Genetic Algorithms, Simulated Annealing,
and Monotonic Regression. Features automatic method selection based on
Information Value ('IV') maximization, strict monotonicity enforcement, and
efficient handling of large datasets via 'Rcpp'. Provides automated variable
screening by Information Value strength and bin ordering, and generation of
the equivalent 'SQL' 'CASE' expressions for in-database scoring. Fully
integrated with the 'tidymodels' ecosystem for building robust machine
learning pipelines.
Based on methods described in Siddiqi (2006) <doi:10.1002/9781119201731>
and Navas-Palencia (2020) <doi:10.48550/arXiv.2001.08025>.
Author: Jose Evandeilton Lopes [aut, cre, cph]
Maintainer: Jose Evandeilton Lopes <evandeilton@gmail.com>
Diff between OptimalBinningWoE versions 1.13.3 dated 2026-08-23 and 1.13.4 dated 2026-08-26
DESCRIPTION | 8 - MD5 | 21 ++--- NEWS.md | 59 ++++++++++++++ R/obwoe_sql.R | 144 +++++++++++++++++++++++++++-------- inst/doc/algorithms.html | 36 ++++---- inst/doc/industrial-pipeline.html | 8 - inst/doc/introduction.html | 10 +- man/dot-ob_sql_decimal.Rd |only man/dot-ob_sql_num.Rd | 34 ++++++-- man/obwoe_sql.Rd | 18 ++-- tests/testthat/helper-germancredit.R | 56 +++++++++++++ tests/testthat/test-obwoe-sql.R | 70 +++++++++++++++-- 12 files changed, 371 insertions(+), 93 deletions(-)
More information about OptimalBinningWoE at CRAN
Permanent link
Title: Synthetic Our Future Health Data Generator
Description: Generates synthetic Our Future Health cohort datasets for method development,
including participant, questionnaire, clinic measurements, outpatient,
inpatient, emergency, mortality, primary care medication, and geography
outputs. Supports reproducible generation with configurable cohort size and
user-defined International Classification of Diseases, Tenth Revision
(ICD-10), Office of Population Censuses and Surveys Classification of
Interventions and Procedures, version 4 (OPCS-4), and British National
Formulary (BNF) code pools.
Author: Hannah Nicholls [aut, cre]
Maintainer: Hannah Nicholls <hlnichollsdev@outlook.com>
Diff between ofhsyn versions 0.1.1 dated 2026-06-09 and 0.1.3 dated 2026-08-26
DESCRIPTION | 10 +++++----- MD5 | 2 +- 2 files changed, 6 insertions(+), 6 deletions(-)
Title: Animated Biplots
Description: Create animated biplots that enables dynamic visualisation of temporal or sequential changes in multivariate data by animating a single biplot across the levels of a time variable. It builds on objects from the 'biplotEZ' package, Lubbe S, le Roux N, Nienkemper-Swanepoel J, Ganey R, Buys R, Adams Z, Manefeldt P (2024) <doi:10.32614/CRAN.package.biplotEZ>, allowing users to create animated biplots that reveal how both samples and variables evolve over time.
Author: Raeesa Ganey [aut, cre, cph] ,
Johane Nienkemper-Swanepoel [aut, cph]
Maintainer: Raeesa Ganey <raeesa.ganey@wits.ac.za>
Diff between moveEZ versions 1.2.0 dated 2026-05-13 and 1.3.0 dated 2026-08-26
moveEZ-1.2.0/moveEZ/vignettes/anim1_moveplot.gif |only moveEZ-1.3.0/moveEZ/DESCRIPTION | 9 moveEZ-1.3.0/moveEZ/MD5 | 41 +- moveEZ-1.3.0/moveEZ/NAMESPACE | 5 moveEZ-1.3.0/moveEZ/NEWS.md | 4 moveEZ-1.3.0/moveEZ/R/evaluation_func.R | 24 - moveEZ-1.3.0/moveEZ/R/globals.R | 3 moveEZ-1.3.0/moveEZ/R/moveEZ-package.R | 1 moveEZ-1.3.0/moveEZ/R/moveplot_func.R |only moveEZ-1.3.0/moveEZ/R/plot.R | 374 ++++++++++++++++------- moveEZ-1.3.0/moveEZ/README.md | 9 moveEZ-1.3.0/moveEZ/build/partial.rdb |binary moveEZ-1.3.0/moveEZ/build/vignette.rds |binary moveEZ-1.3.0/moveEZ/inst/doc/moveEZ.R | 17 - moveEZ-1.3.0/moveEZ/inst/doc/moveEZ.Rmd | 19 - moveEZ-1.3.0/moveEZ/inst/doc/moveEZ.html | 310 +++++++++---------- moveEZ-1.3.0/moveEZ/man/evaluation.Rd | 6 moveEZ-1.3.0/moveEZ/man/figures/logo.png |binary moveEZ-1.3.0/moveEZ/man/moveplot.Rd | 27 + moveEZ-1.3.0/moveEZ/man/moveplot2.Rd | 15 moveEZ-1.3.0/moveEZ/man/reexports.Rd | 4 moveEZ-1.3.0/moveEZ/vignettes/anim1.gif |only moveEZ-1.3.0/moveEZ/vignettes/moveEZ.Rmd | 19 - 23 files changed, 550 insertions(+), 337 deletions(-)
Title: Missing Person Identification Tools
Description: A comprehensive toolkit for missing person identification combining
genetic and non-genetic evidence within a Bayesian framework. Computes
likelihood ratios (LRs) for DNA profiles, biological sex, age, hair color,
and birthdate evidence. Provides decision analysis tools including optimal
LR thresholds, error rate calculations, and ROC curve visualization.
Includes interactive Shiny applications for exploring evidence combinations.
For methodological details see Marsico et al. (2023) <doi:10.1016/j.fsigen.2023.102891>
and Marsico, Vigeland et al. (2021) <doi:10.1016/j.fsigen.2021.102519>.
Author: Franco Marsico [aut, cre] ,
Suisei Nakagawa [aut]
Maintainer: Franco Marsico <franco.lmarsico@gmail.com>
Diff between mispitools versions 2.0.0 dated 2026-08-25 and 2.0.1 dated 2026-08-26
DESCRIPTION | 6 +- MD5 | 24 ++++---- NEWS.md | 39 +++++++++++++ R/lr_distribution.R | 10 +++ R/r_ref_per_marker.R | 47 ++++++++++++++-- README.md | 121 +++++++++++++++++++++++++++++++++++++++++- inst/doc/belief_dynamics.html | 4 - inst/doc/introduction.html | 4 - inst/doc/workflow.html | 6 +- man/lr_distribution.Rd | 10 +++ src/core/evidence_combine.cpp | 11 +-- src/core/lr_dist.cpp | 34 +++++------ src/core/lr_dist.h | 48 +++++++++++++++- 13 files changed, 309 insertions(+), 55 deletions(-)
Title: Ultra-Fast Analysis of Sparse DNA Methylome via Recurrent
Pattern Encoding
Description: Methods for analyzing DNA methylation data via Most Recurrent
Methylation Patterns (MRMPs). Supports cell-type annotation, spatial
deconvolution, unsupervised clustering, and cancer cell-of-origin inference.
Includes C-backed summaries for YAME ".cg/.cm" files (overlap counts, log2
odds ratios, beta/depth aggregation), an XGBoost classifier, NNLS
deconvolution, and plotting utilities. Scales to large spatial and
single-cell methylomes and is robust to extreme sparsity.
Author: Hongxiang Fu [aut, cre] ,
Wanding Zhou [cph, fnd],
The SAMtools/HTSlib authors [ctb, cph] ,
Attractive Chaos [ctb, cph] )
Maintainer: Hongxiang Fu <fhx@seas.upenn.edu>
Diff between MethScope versions 1.0.3 dated 2026-06-16 and 1.0.4 dated 2026-08-26
MethScope-1.0.3/MethScope/LICENSE |only MethScope-1.0.3/MethScope/inst/COPYRIGHTS |only MethScope-1.0.3/MethScope/inst/WORDLIST |only MethScope-1.0.3/MethScope/tests/spelling.R |only MethScope-1.0.4/MethScope/DESCRIPTION | 18 MethScope-1.0.4/MethScope/MD5 | 82 +- MethScope-1.0.4/MethScope/NEWS.md |only MethScope-1.0.4/MethScope/R/GenerateInput.R | 63 - MethScope-1.0.4/MethScope/R/ModelTraining.R | 55 + MethScope-1.0.4/MethScope/R/PredictCellType.R | 10 MethScope-1.0.4/MethScope/R/VisualizeOutput.R | 2 MethScope-1.0.4/MethScope/R/globals.R |only MethScope-1.0.4/MethScope/R/utils.R | 6 MethScope-1.0.4/MethScope/README.md | 174 ++++- MethScope-1.0.4/MethScope/build/vignette.rds |binary MethScope-1.0.4/MethScope/inst/doc/MethScope-Input.R |only MethScope-1.0.4/MethScope/inst/doc/MethScope-Input.Rmd |only MethScope-1.0.4/MethScope/inst/doc/MethScope-Input.html |only MethScope-1.0.4/MethScope/inst/doc/MethScope-MRMP.R | 5 MethScope-1.0.4/MethScope/inst/doc/MethScope-MRMP.Rmd | 51 + MethScope-1.0.4/MethScope/inst/doc/MethScope-MRMP.html | 89 +- MethScope-1.0.4/MethScope/inst/doc/MethScope-Tutorial.R | 122 ++- MethScope-1.0.4/MethScope/inst/doc/MethScope-Tutorial.Rmd | 230 +++++- MethScope-1.0.4/MethScope/inst/doc/MethScope-Tutorial.html | 366 ++++++++--- MethScope-1.0.4/MethScope/inst/doc/agent-skill.R |only MethScope-1.0.4/MethScope/inst/doc/agent-skill.Rmd |only MethScope-1.0.4/MethScope/inst/doc/agent-skill.html |only MethScope-1.0.4/MethScope/inst/doc/methscope-cli.R |only MethScope-1.0.4/MethScope/inst/doc/methscope-cli.Rmd |only MethScope-1.0.4/MethScope/inst/doc/methscope-cli.html |only MethScope-1.0.4/MethScope/inst/doc/pretrained-models.R |only MethScope-1.0.4/MethScope/inst/doc/pretrained-models.Rmd |only MethScope-1.0.4/MethScope/inst/doc/pretrained-models.html |only MethScope-1.0.4/MethScope/inst/extdata/example_label.csv |only MethScope-1.0.4/MethScope/inst/extdata/hg38_Zhou2025_ref.rds |only MethScope-1.0.4/MethScope/inst/extdata/mm10_Liu2021_ref.rds |only MethScope-1.0.4/MethScope/man/GenerateInput.Rd | 7 MethScope-1.0.4/MethScope/man/GenerateReference.Rd | 25 MethScope-1.0.4/MethScope/man/PlotConfusion.Rd | 2 MethScope-1.0.4/MethScope/man/PlotUMAP.Rd | 2 MethScope-1.0.4/MethScope/man/PlotUMAP_fixedwindow.Rd | 2 MethScope-1.0.4/MethScope/man/PredictCellType.Rd | 10 MethScope-1.0.4/MethScope/man/figures/logo.svg |only MethScope-1.0.4/MethScope/man/figures/overview.png |only MethScope-1.0.4/MethScope/src/Makevars | 1 MethScope-1.0.4/MethScope/src/bgzf.c | 30 MethScope-1.0.4/MethScope/src/format3.c | 44 - MethScope-1.0.4/MethScope/src/summary.c | 34 - MethScope-1.0.4/MethScope/vignettes/MethScope-Input.Rmd |only MethScope-1.0.4/MethScope/vignettes/MethScope-MRMP.Rmd | 51 + MethScope-1.0.4/MethScope/vignettes/MethScope-Tutorial.Rmd | 230 +++++- MethScope-1.0.4/MethScope/vignettes/agent-skill.Rmd |only MethScope-1.0.4/MethScope/vignettes/figures |only MethScope-1.0.4/MethScope/vignettes/methscope-cli.Rmd |only MethScope-1.0.4/MethScope/vignettes/pretrained-models.Rmd |only 55 files changed, 1221 insertions(+), 490 deletions(-)
Title: Certified Partial Eigenvalue and Singular Value Computation
Description: Computes the top-k singular triplets or eigenpairs of large
sparse and structured matrices: the computation behind principal component
analysis on big sparse data, spectral embeddings, and low-rank
approximation. Every result carries a numerical certificate with
residuals, a backward-error bound, orthogonality loss, and a pass/fail
flag, and bounds that can only be estimated are reported as such rather
than passed. Centered, scaled, and composed operators are solved through
native 'C++' kernels without forming dense matrices. Drop-in replacements
for the 'RSpectra' interface are included.
Author: Bradley Buchsbaum [aut, cre, cph]
Maintainer: Bradley Buchsbaum <brad.buchsbaum@gmail.com>
Diff between eigencore versions 1.0.2 dated 2026-07-25 and 1.0.3 dated 2026-08-26
DESCRIPTION | 6 ++--- MD5 | 11 +++++---- NEWS.md | 8 ++++++ inst/doc/benchmarks.html | 36 +++++++++++++++--------------- src/native_operators.cpp | 1 tests/testthat/test-cpp-header-hygiene.R |only tests/testthat/test-profmem-portability.R | 17 +++++++++----- 7 files changed, 47 insertions(+), 32 deletions(-)
Title: Acquiring and Analyzing Baseball Data
Description: Provides numerous utilities for acquiring and analyzing
baseball data from online sources such as 'Baseball Reference'
<https://www.baseball-reference.com/>, 'FanGraphs'
<https://www.fangraphs.com/>, and the 'MLB Stats' API
<https://www.mlb.com/>.
Author: Bill Petti [aut],
Saiem Gilani [aut, cre] ,
Ben Baumer [ctb],
Ben Dilday [ctb],
Robert Frey [ctb],
Camden Kay [ctb],
baseballr authors [cph]
Maintainer: Saiem Gilani <saiem.gilani@gmail.com>
Diff between baseballr versions 1.6.0 dated 2024-01-16 and 2.0.0 dated 2026-08-26
DESCRIPTION | 41 LICENSE | 4 MD5 | 1113 +++++--- NAMESPACE | 790 ++++-- NEWS.md | 2465 +++++++++---------- R/bref.R | 12 R/bref_daily_batter.R | 221 - R/bref_daily_pitcher.R | 302 +- R/bref_standings_on_date.R | 201 - R/bref_team_results.R | 200 - R/chadwick.R | 10 R/chadwick_installation.R | 206 - R/chadwick_player_lu.R | 156 - R/chadwick_playerid_lookup.R | 164 - R/chadwick_playername_lookup.R | 78 R/espn_baseball_athlete_career_helpers.R |only R/espn_baseball_athlete_helpers.R |only R/espn_baseball_awards_helpers.R |only R/espn_baseball_calendar_helpers.R |only R/espn_baseball_coach_helpers.R |only R/espn_baseball_draft_helpers.R |only R/espn_baseball_event_betting_helpers.R |only R/espn_baseball_event_competitor_helpers.R |only R/espn_baseball_event_helpers.R |only R/espn_baseball_event_play_helpers.R |only R/espn_baseball_franchise_helpers.R |only R/espn_baseball_futures_helpers.R |only R/espn_baseball_group_helpers.R |only R/espn_baseball_injuries_helpers.R |only R/espn_baseball_league_helpers.R |only R/espn_baseball_news_helpers.R |only R/espn_baseball_position_helpers.R |only R/espn_baseball_powerindex_helpers.R |only R/espn_baseball_record_helpers.R |only R/espn_baseball_season_meta_helpers.R |only R/espn_baseball_team_deep_helpers.R |only R/espn_baseball_team_helpers.R |only R/espn_baseball_tournaments_helpers.R |only R/espn_baseball_week_helpers.R |only R/espn_college_baseball_athlete_career.R |only R/espn_college_baseball_athletes.R |only R/espn_college_baseball_calendar.R |only R/espn_college_baseball_coach.R |only R/espn_college_baseball_data.R |only R/espn_college_baseball_event_detail.R |only R/espn_college_baseball_game_data.R |only R/espn_college_baseball_groups.R |only R/espn_college_baseball_groups_v2.R |only R/espn_college_baseball_league.R |only R/espn_college_baseball_news.R |only R/espn_college_baseball_season_meta.R |only R/espn_college_baseball_team_deep.R |only R/espn_college_baseball_team_detail.R |only R/espn_college_baseball_team_record.R |only R/espn_college_baseball_tournaments.R |only R/espn_college_baseball_weeks.R |only R/espn_mlb.R |only R/espn_mlb_athlete_career.R |only R/espn_mlb_athlete_contracts.R |only R/espn_mlb_athletes.R |only R/espn_mlb_awards.R |only R/espn_mlb_box_helpers.R |only R/espn_mlb_calendar.R |only R/espn_mlb_coach.R |only R/espn_mlb_data.R |only R/espn_mlb_event_detail.R |only R/espn_mlb_franchise.R |only R/espn_mlb_futures.R |only R/espn_mlb_game_extras.R |only R/espn_mlb_groups.R |only R/espn_mlb_groups_v2.R |only R/espn_mlb_injuries.R |only R/espn_mlb_league.R |only R/espn_mlb_news.R |only R/espn_mlb_overviews.R |only R/espn_mlb_positions.R |only R/espn_mlb_powerindex.R |only R/espn_mlb_season_meta.R |only R/espn_mlb_team_deep.R |only R/espn_mlb_team_detail.R |only R/espn_mlb_team_record.R |only R/espn_mlb_tournaments.R |only R/espn_mlb_transactions.R |only R/espn_mlb_weeks.R |only R/espn_mlb_wp.R |only R/fangraphs.R | 30 R/fg_batter_game_logs.R | 738 +++-- R/fg_batter_leaders.R | 1100 ++++---- R/fg_fielder_leaders.R | 405 +-- R/fg_guts.R | 101 R/fg_milb_batter_game_logs.R | 315 +- R/fg_milb_pitcher_game_logs.R | 305 +- R/fg_park.R | 206 - R/fg_pitcher_game_logs.R | 629 +++- R/fg_pitcher_leaders.R | 1244 +++++---- R/fg_projections.R |only R/fg_team_batter.R | 1060 ++++---- R/fg_team_fielder.R | 384 +- R/fg_team_pitcher.R | 1143 +++++--- R/fox_mlb.R |only R/ggpitchzone.R |only R/load_baseball.R |only R/load_game_info_sup.R | 97 R/load_umpire_ids.R | 81 R/metrics.R | 16 R/metrics_fip_plus.R | 174 - R/metrics_linear_weights_savant.R | 178 - R/metrics_run_expectancy_code.R | 418 +-- R/metrics_team_consistency.R | 264 +- R/metrics_woba_plus.R | 168 - R/mlb.R | 18 R/mlb_all_star_ballots.R | 205 - R/mlb_all_star_final_vote.R | 186 - R/mlb_all_star_write_ins.R | 182 - R/mlb_attendance.R | 207 - R/mlb_award.R | 20 R/mlb_awards.R | 94 R/mlb_awards_recipient.R | 119 R/mlb_base_state.R |only R/mlb_baseball_stats.R | 111 R/mlb_batting_orders.R | 59 R/mlb_conferences.R | 111 R/mlb_divisions.R | 129 R/mlb_draft.R | 188 - R/mlb_draft_latest.R | 256 + R/mlb_draft_prospects.R | 267 +- R/mlb_event_types.R | 81 R/mlb_fielder_detail_types.R | 85 R/mlb_game_changes.R | 228 - R/mlb_game_content.R | 136 - R/mlb_game_context_metrics.R | 277 +- R/mlb_game_info.R | 224 + R/mlb_game_linescore.R | 319 +- R/mlb_game_pace.R | 236 - R/mlb_game_pks.R | 124 R/mlb_game_status_codes.R | 81 R/mlb_game_timecodes.R | 80 R/mlb_game_types.R | 81 R/mlb_game_wp.R | 107 R/mlb_high_low_stats.R | 356 +- R/mlb_high_low_types.R | 99 R/mlb_hit_trajectories.R | 81 R/mlb_homerun_derby.R | 1049 ++++---- R/mlb_job_types.R | 81 R/mlb_jobs.R | 128 R/mlb_jobs_datacasters.R | 103 R/mlb_jobs_official_scorers.R | 101 R/mlb_jobs_umpires.R | 103 R/mlb_languages.R | 82 R/mlb_league.R | 170 - R/mlb_league_leader_types.R | 77 R/mlb_logical_events.R | 77 R/mlb_metrics.R | 87 R/mlb_model_loaders.R |only R/mlb_pbp.R | 684 ++--- R/mlb_pbp_diff.R | 626 ++-- R/mlb_people.R | 162 - R/mlb_people_free_agents.R | 107 R/mlb_pitch_codes.R | 91 R/mlb_pitch_types.R | 81 R/mlb_player_game_stats.R | 266 -- R/mlb_player_game_stats_current.R | 286 +- R/mlb_player_status_codes.R | 81 R/mlb_positions.R | 123 R/mlb_probables.R | 44 R/mlb_review_reasons.R | 83 R/mlb_roster_types.R | 73 R/mlb_rosters.R | 134 - R/mlb_runner_detail_types.R | 73 R/mlb_schedule.R | 187 - R/mlb_schedule_event_types.R | 85 R/mlb_schedule_games_tied.R | 263 -- R/mlb_schedule_postseason.R | 288 +- R/mlb_schedule_postseason_series.R | 287 +- R/mlb_seasons.R | 139 - R/mlb_seasons_all.R | 151 - R/mlb_situation_codes.R | 97 R/mlb_sky.R | 81 R/mlb_sports.R | 153 - R/mlb_sports_info.R | 106 R/mlb_sports_players.R | 196 - R/mlb_standings.R | 247 - R/mlb_standings_types.R | 83 R/mlb_stat_groups.R | 77 R/mlb_stat_types.R | 77 R/mlb_stats.R | 378 +- R/mlb_stats_leaders.R | 269 +- R/mlb_stats_streaks.R | 242 - R/mlb_team_affiliates.R | 169 - R/mlb_team_alumni.R | 192 - R/mlb_team_coaches.R | 113 R/mlb_team_history.R | 145 - R/mlb_team_info.R | 148 - R/mlb_team_leaders.R | 161 - R/mlb_team_personnel.R | 101 R/mlb_team_stats.R | 199 - R/mlb_teams.R | 206 - R/mlb_teams_stats.R | 223 - R/mlb_teams_stats_leaders.R | 183 - R/mlb_umpire_games.R | 214 - R/mlb_venues.R | 99 R/mlb_wind_direction_codes.R | 83 R/ncaa.R | 110 R/ncaa_chromote.R |only R/ncaa_game_logs.R | 517 +-- R/ncaa_lineups.R | 328 -- R/ncaa_park_factor.R | 736 ++--- R/ncaa_pbp.R | 435 +-- R/ncaa_roster.R | 299 +- R/ncaa_schedule_info.R | 688 ++--- R/ncaa_school_id_lu.R | 84 R/ncaa_team_player_stats.R | 567 ++-- R/ncaa_teams.R | 74 R/retrosheet_data.R | 18 R/sc_statcast_leaderboards.R | 923 +++---- R/sc_statcast_search.R | 1104 +++----- R/sch_edge_code.R | 8 R/sch_edge_frequency.R | 14 R/sch_label_statcast_imputed_data.R | 116 R/sch_process_statcast_payload.R | 189 - R/sch_statline_from_statcast.R | 574 ++-- R/spotrac.R |only R/sptrc_league_payrolls.R | 166 - R/sptrc_team_active_payroll.R | 338 +- R/statcast.R | 12 R/utils.R | 617 +++- R/utils_espn.R |only R/utils_mlb_stats.R | 313 +- README.md | 592 ++-- man/baseballr-package.Rd | 80 man/bref.Rd | 10 man/bref_daily_batter.Rd | 64 man/bref_daily_pitcher.Rd | 96 man/bref_read_html.Rd |only man/bref_standings_on_date.Rd | 81 man/bref_team_results.Rd | 48 man/chadwick.Rd | 8 man/chadwick_path.Rd | 2 man/chadwick_player_id_lu.Rd | 26 man/chadwick_player_lu.Rd | 84 man/chadwick_player_name_lu.Rd | 26 man/dot-capture_args.Rd |only man/dot-interp_braces.Rd |only man/dot-ncaa_is_interstitial.Rd |only man/dot-ncaa_resolve_season_team_id.Rd |only man/dot-report_api_error.Rd |only man/dot-report_api_warning.Rd |only man/dot-resp_text.Rd |only man/dot-retry_request.Rd |only man/espn_college_baseball_athletes_index.Rd |only man/espn_college_baseball_calendar.Rd |only man/espn_college_baseball_coach.Rd |only man/espn_college_baseball_coach_record.Rd |only man/espn_college_baseball_coach_season.Rd |only man/espn_college_baseball_coaches.Rd |only man/espn_college_baseball_conferences.Rd |only man/espn_college_baseball_game_all.Rd |only man/espn_college_baseball_game_broadcasts.Rd |only man/espn_college_baseball_game_official_detail.Rd |only man/espn_college_baseball_game_officials.Rd |only man/espn_college_baseball_game_play.Rd |only man/espn_college_baseball_game_play_personnel.Rd |only man/espn_college_baseball_game_player_box.Rd |only man/espn_college_baseball_game_rosters.Rd |only man/espn_college_baseball_game_situation.Rd |only man/espn_college_baseball_game_team_leaders.Rd |only man/espn_college_baseball_game_team_linescores.Rd |only man/espn_college_baseball_game_team_records.Rd |only man/espn_college_baseball_game_team_roster.Rd |only man/espn_college_baseball_game_team_roster_entry.Rd |only man/espn_college_baseball_game_team_score.Rd |only man/espn_college_baseball_game_team_statistics.Rd |only man/espn_college_baseball_leaders.Rd |only man/espn_college_baseball_news.Rd |only man/espn_college_baseball_pbp.Rd |only man/espn_college_baseball_player_awards.Rd |only man/espn_college_baseball_player_box.Rd |only man/espn_college_baseball_player_career_stats.Rd |only man/espn_college_baseball_player_eventlog.Rd |only man/espn_college_baseball_player_gamelog.Rd |only man/espn_college_baseball_player_info.Rd |only man/espn_college_baseball_player_overview.Rd |only man/espn_college_baseball_player_seasons.Rd |only man/espn_college_baseball_player_splits.Rd |only man/espn_college_baseball_player_statisticslog.Rd |only man/espn_college_baseball_scoreboard.Rd |only man/espn_college_baseball_season_group.Rd |only man/espn_college_baseball_season_group_children.Rd |only man/espn_college_baseball_season_group_teams.Rd |only man/espn_college_baseball_season_groups.Rd |only man/espn_college_baseball_season_info.Rd |only man/espn_college_baseball_season_leaders.Rd |only man/espn_college_baseball_season_ranking.Rd |only man/espn_college_baseball_season_rankings.Rd |only man/espn_college_baseball_season_type.Rd |only man/espn_college_baseball_season_types.Rd |only man/espn_college_baseball_season_week.Rd |only man/espn_college_baseball_season_weeks.Rd |only man/espn_college_baseball_seasons.Rd |only man/espn_college_baseball_standings.Rd |only man/espn_college_baseball_team.Rd |only man/espn_college_baseball_team_box.Rd |only man/espn_college_baseball_team_leaders.Rd |only man/espn_college_baseball_team_news.Rd |only man/espn_college_baseball_team_record.Rd |only man/espn_college_baseball_team_record_detail.Rd |only man/espn_college_baseball_team_roster.Rd |only man/espn_college_baseball_team_schedule.Rd |only man/espn_college_baseball_team_season_profile.Rd |only man/espn_college_baseball_team_season_roster.Rd |only man/espn_college_baseball_team_season_statistics.Rd |only man/espn_college_baseball_teams.Rd |only man/espn_college_baseball_tournament.Rd |only man/espn_college_baseball_tournament_season.Rd |only man/espn_college_baseball_tournament_seasons.Rd |only man/espn_college_baseball_tournaments.Rd |only man/espn_college_baseball_venues.Rd |only man/espn_college_baseball_week_ranking.Rd |only man/espn_college_baseball_week_rankings.Rd |only man/espn_mlb.Rd |only man/espn_mlb_athletes_index.Rd |only man/espn_mlb_award.Rd |only man/espn_mlb_betting.Rd |only man/espn_mlb_calendar.Rd |only man/espn_mlb_coach.Rd |only man/espn_mlb_coach_record.Rd |only man/espn_mlb_coach_season.Rd |only man/espn_mlb_coaches.Rd |only man/espn_mlb_conferences.Rd |only man/espn_mlb_draft.Rd |only man/espn_mlb_draft_athlete_detail.Rd |only man/espn_mlb_draft_athletes.Rd |only man/espn_mlb_draft_pick.Rd |only man/espn_mlb_draft_rounds.Rd |only man/espn_mlb_draft_status.Rd |only man/espn_mlb_franchise.Rd |only man/espn_mlb_franchises.Rd |only man/espn_mlb_freeagents.Rd |only man/espn_mlb_futures.Rd |only man/espn_mlb_game_all.Rd |only man/espn_mlb_game_broadcasts.Rd |only man/espn_mlb_game_endpoints.Rd |only man/espn_mlb_game_info.Rd |only man/espn_mlb_game_odds.Rd |only man/espn_mlb_game_official_detail.Rd |only man/espn_mlb_game_officials.Rd |only man/espn_mlb_game_play.Rd |only man/espn_mlb_game_play_personnel.Rd |only man/espn_mlb_game_player_box.Rd |only man/espn_mlb_game_powerindex.Rd |only man/espn_mlb_game_predictor.Rd |only man/espn_mlb_game_probabilities.Rd |only man/espn_mlb_game_probables.Rd |only man/espn_mlb_game_propbets.Rd |only man/espn_mlb_game_rosters.Rd |only man/espn_mlb_game_situation.Rd |only man/espn_mlb_game_team_leaders.Rd |only man/espn_mlb_game_team_linescores.Rd |only man/espn_mlb_game_team_records.Rd |only man/espn_mlb_game_team_roster.Rd |only man/espn_mlb_game_team_roster_entry.Rd |only man/espn_mlb_game_team_score.Rd |only man/espn_mlb_game_team_statistics.Rd |only man/espn_mlb_injuries.Rd |only man/espn_mlb_leaders.Rd |only man/espn_mlb_news.Rd |only man/espn_mlb_pbp.Rd |only man/espn_mlb_player_awards.Rd |only man/espn_mlb_player_box.Rd |only man/espn_mlb_player_career_stats.Rd |only man/espn_mlb_player_contract.Rd |only man/espn_mlb_player_contracts.Rd |only man/espn_mlb_player_endpoints.Rd |only man/espn_mlb_player_eventlog.Rd |only man/espn_mlb_player_eventlog_v2.Rd |only man/espn_mlb_player_gamelog.Rd |only man/espn_mlb_player_info.Rd |only man/espn_mlb_player_overview.Rd |only man/espn_mlb_player_seasons.Rd |only man/espn_mlb_player_splits.Rd |only man/espn_mlb_player_statisticslog.Rd |only man/espn_mlb_player_stats.Rd |only man/espn_mlb_player_stats_v3.Rd |only man/espn_mlb_position.Rd |only man/espn_mlb_positions.Rd |only man/espn_mlb_powerindex.Rd |only man/espn_mlb_scoreboard.Rd |only man/espn_mlb_season_awards.Rd |only man/espn_mlb_season_draft.Rd |only man/espn_mlb_season_group.Rd |only man/espn_mlb_season_group_children.Rd |only man/espn_mlb_season_group_teams.Rd |only man/espn_mlb_season_groups.Rd |only man/espn_mlb_season_info.Rd |only man/espn_mlb_season_leaders.Rd |only man/espn_mlb_season_ranking.Rd |only man/espn_mlb_season_rankings.Rd |only man/espn_mlb_season_type.Rd |only man/espn_mlb_season_types.Rd |only man/espn_mlb_season_week.Rd |only man/espn_mlb_season_weeks.Rd |only man/espn_mlb_seasons.Rd |only man/espn_mlb_standings.Rd |only man/espn_mlb_team.Rd |only man/espn_mlb_team_box.Rd |only man/espn_mlb_team_current_roster.Rd |only man/espn_mlb_team_depthchart.Rd |only man/espn_mlb_team_endpoints.Rd |only man/espn_mlb_team_injuries.Rd |only man/espn_mlb_team_leaders.Rd |only man/espn_mlb_team_news.Rd |only man/espn_mlb_team_odds_records.Rd |only man/espn_mlb_team_record.Rd |only man/espn_mlb_team_record_detail.Rd |only man/espn_mlb_team_roster.Rd |only man/espn_mlb_team_schedule.Rd |only man/espn_mlb_team_season_profile.Rd |only man/espn_mlb_team_season_roster.Rd |only man/espn_mlb_team_season_statistics.Rd |only man/espn_mlb_team_stats.Rd |only man/espn_mlb_teams.Rd |only man/espn_mlb_tournament.Rd |only man/espn_mlb_tournament_season.Rd |only man/espn_mlb_tournament_seasons.Rd |only man/espn_mlb_tournaments.Rd |only man/espn_mlb_transactions.Rd |only man/espn_mlb_venues.Rd |only man/espn_mlb_week_ranking.Rd |only man/espn_mlb_week_rankings.Rd |only man/espn_mlb_wp.Rd |only man/fangraphs.Rd | 28 man/fg_bat_leaders.Rd | 6 man/fg_batter_game_logs.Rd | 621 ++-- man/fg_batter_leaders.Rd | 970 ++++--- man/fg_fielder_leaders.Rd | 127 man/fg_guts.Rd | 32 man/fg_milb_batter_game_logs.Rd | 102 man/fg_milb_pitcher_game_logs.Rd | 102 man/fg_park.Rd | 60 man/fg_pitch_leaders.Rd | 164 - man/fg_pitcher_game_logs.Rd | 505 ++- man/fg_pitcher_leaders.Rd | 1116 ++++---- man/fg_projections.Rd |only man/fg_team_batter.Rd | 945 ++++--- man/fg_team_fielder.Rd | 287 +- man/fg_team_pitcher.Rd | 1034 ++++--- man/fip_plus.Rd | 152 - man/fox_mlb_league_leaders.Rd |only man/fox_mlb_odds.Rd |only man/fox_mlb_standings.Rd |only man/fox_mlb_team_gamelog.Rd |only man/fox_mlb_team_roster.Rd |only man/fox_mlb_team_stats.Rd |only man/get_ncaa_baseball_pbp.Rd | 123 man/get_ncaa_baseball_roster.Rd | 73 man/get_ncaa_game_logs.Rd | 102 man/get_ncaa_lineups.Rd | 50 man/get_ncaa_park_factor.Rd | 70 man/get_ncaa_schedule_info.Rd | 78 man/get_pbp_mlb.Rd | 59 man/ggpitchzone.Rd |only man/helper_espn_mlb_pbp.Rd |only man/helper_espn_mlb_player_box.Rd |only man/helper_espn_mlb_team_box.Rd |only man/label_statcast_imputed_data.Rd | 106 man/linear_weights_savant.Rd | 10 man/load_baseball.Rd |only man/metrics.Rd | 14 man/mlb.Rd | 16 man/mlb_all_star.Rd |only man/mlb_all_star_ballots.Rd | 99 man/mlb_all_star_final_vote.Rd | 99 man/mlb_all_star_write_ins.Rd | 95 man/mlb_attendance.Rd | 68 man/mlb_award.Rd | 18 man/mlb_awards.Rd | 23 man/mlb_awards_recipient.Rd | 34 man/mlb_baseball_stats.Rd | 14 man/mlb_batting_orders.Rd | 20 man/mlb_conferences.Rd | 24 man/mlb_divisions.Rd | 32 man/mlb_draft.Rd | 154 - man/mlb_draft_endpoints.Rd |only man/mlb_draft_latest.Rd | 194 - man/mlb_draft_prospects.Rd | 205 - man/mlb_event_types.Rd | 14 man/mlb_fielder_detail_types.Rd | 14 man/mlb_game_changes.Rd | 139 - man/mlb_game_content.Rd | 43 man/mlb_game_context_metrics.Rd | 133 - man/mlb_game_endpoints.Rd |only man/mlb_game_info.Rd | 40 man/mlb_game_linescore.Rd | 192 - man/mlb_game_pace.Rd | 101 man/mlb_game_pks.Rd | 115 man/mlb_game_status_codes.Rd | 16 man/mlb_game_timecodes.Rd | 6 man/mlb_game_types.Rd | 8 man/mlb_game_wp.Rd | 14 man/mlb_high_low_stats.Rd | 67 man/mlb_high_low_types.Rd | 18 man/mlb_hit_trajectories.Rd | 8 man/mlb_homerun_derby.Rd | 127 man/mlb_homerun_derby_bracket.Rd | 85 man/mlb_homerun_derby_endpoints.Rd |only man/mlb_homerun_derby_players.Rd | 186 - man/mlb_job_types.Rd | 10 man/mlb_jobs.Rd | 18 man/mlb_jobs_datacasters.Rd | 18 man/mlb_jobs_endpoints.Rd |only man/mlb_jobs_official_scorers.Rd | 18 man/mlb_jobs_umpires.Rd | 18 man/mlb_languages.Rd | 11 man/mlb_league.Rd | 45 man/mlb_league_leader_types.Rd | 6 man/mlb_logical_events.Rd | 6 man/mlb_metrics.Rd | 12 man/mlb_model_loaders.Rd |only man/mlb_pbp.Rd | 369 +- man/mlb_pbp_diff.Rd | 280 +- man/mlb_people.Rd | 90 man/mlb_people_free_agents.Rd | 38 man/mlb_pitch_codes.Rd | 18 man/mlb_pitch_types.Rd | 8 man/mlb_player_game_stats.Rd | 173 - man/mlb_player_game_stats_current.Rd | 244 - man/mlb_player_status_codes.Rd | 8 man/mlb_positions.Rd | 26 man/mlb_probables.Rd | 20 man/mlb_review_reasons.Rd | 8 man/mlb_roster_types.Rd | 10 man/mlb_rosters.Rd | 102 man/mlb_runner_detail_types.Rd | 6 man/mlb_schedule.Rd | 147 - man/mlb_schedule_endpoints.Rd |only man/mlb_schedule_event_types.Rd | 8 man/mlb_schedule_games_tied.Rd | 136 - man/mlb_schedule_postseason.Rd | 140 - man/mlb_schedule_postseason_series.Rd | 144 - man/mlb_seasons.Rd | 46 man/mlb_seasons_all.Rd | 46 man/mlb_situation_codes.Rd | 20 man/mlb_sky.Rd | 8 man/mlb_sports.Rd | 18 man/mlb_sports_info.Rd | 18 man/mlb_sports_players.Rd | 105 man/mlb_standings.Rd | 113 man/mlb_standings_types.Rd | 8 man/mlb_stat_groups.Rd | 6 man/mlb_stat_types.Rd | 6 man/mlb_stats.Rd | 317 +- man/mlb_stats_endpoints.Rd |only man/mlb_stats_leaders.Rd | 50 man/mlb_team_affiliates.Rd | 74 man/mlb_team_alumni.Rd | 94 man/mlb_team_coaches.Rd | 18 man/mlb_team_endpoints.Rd |only man/mlb_team_history.Rd | 56 man/mlb_team_info.Rd | 63 man/mlb_team_leaders.Rd | 48 man/mlb_team_personnel.Rd | 18 man/mlb_team_stats.Rd | 81 man/mlb_teams.Rd | 70 man/mlb_teams_stats.Rd | 180 - man/mlb_teams_stats_leaders.Rd | 38 man/mlb_venues.Rd | 14 man/mlb_wind_direction_codes.Rd | 8 man/most_recent_college_baseball_season.Rd |only man/ncaa.Rd | 148 - man/ncaa_game_logs.Rd | 159 - man/ncaa_lineups.Rd | 82 man/ncaa_park_factor.Rd | 88 man/ncaa_pbp.Rd | 119 man/ncaa_roster.Rd | 85 man/ncaa_schedule_info.Rd | 108 man/ncaa_school_id_lu.Rd | 69 man/ncaa_scrape.Rd | 134 - man/ncaa_team_player_stats.Rd | 145 - man/ncaa_teams.Rd | 21 man/request_with_proxy.Rd | 34 man/run_expectancy_code.Rd | 133 - man/school_id_lu.Rd | 48 man/scrape_statcast_savant.Rd | 169 - man/spotrac.Rd |only man/sptrc_league_payrolls.Rd | 31 man/sptrc_team_active_payroll.Rd | 36 man/standings_on_date_bref.Rd | 53 man/statcast.Rd | 10 man/statcast_leaderboards.Rd | 43 man/statcast_pitch_colors.Rd |only man/statcast_search.Rd | 629 +--- man/team_consistency.Rd | 56 man/woba_plus.Rd | 118 tests/testthat/helper-skip.R |only tests/testthat/test-baseballr.R | 65 tests/testthat/test-bref_daily_batter.R | 30 tests/testthat/test-bref_daily_pitcher.R | 40 tests/testthat/test-bref_read_html.R |only tests/testthat/test-bref_standings_on_date.R | 40 tests/testthat/test-bref_team_results.R | 34 tests/testthat/test-chadwick_player_lu.R | 51 tests/testthat/test-chadwick_playerid_lookup.R | 33 tests/testthat/test-chadwick_playername_lookup.R | 31 tests/testthat/test-espn_college_baseball.R |only tests/testthat/test-espn_mlb.R |only tests/testthat/test-fg_batter_game_logs.R | 567 ++-- tests/testthat/test-fg_batter_leaders.R | 762 +++-- tests/testthat/test-fg_fielder_leaders.R | 137 - tests/testthat/test-fg_guts.R | 35 tests/testthat/test-fg_milb_batter_game_logs.R | 127 tests/testthat/test-fg_milb_pitcher_game_logs.R | 123 tests/testthat/test-fg_park.R | 35 tests/testthat/test-fg_park_hand.R | 35 tests/testthat/test-fg_pitcher_gamelogs.R | 297 +- tests/testthat/test-fg_pitcher_leaders.R | 889 +++--- tests/testthat/test-fg_projections.R |only tests/testthat/test-fg_team_batter.R | 679 ++--- tests/testthat/test-fg_team_fielder.R | 131 - tests/testthat/test-fg_team_pitcher.R | 711 ++--- tests/testthat/test-fox_mlb.R |only tests/testthat/test-ggpitchzone.R |only tests/testthat/test-label_statcast_imputed_data.R | 59 tests/testthat/test-load_game_info_sup.R | 35 tests/testthat/test-load_umpire_ids.R | 27 tests/testthat/test-metrics_team_consistency.R | 26 tests/testthat/test-mlb_attendance.R | 51 tests/testthat/test-mlb_awards.R | 29 tests/testthat/test-mlb_awards_recipient.R | 35 tests/testthat/test-mlb_base_state.R |only tests/testthat/test-mlb_baseball_stats.R | 27 tests/testthat/test-mlb_batting_orders.R | 29 tests/testthat/test-mlb_conferences.R | 31 tests/testthat/test-mlb_divisions.R | 35 tests/testthat/test-mlb_draft.R | 90 tests/testthat/test-mlb_draft_latest.R | 103 tests/testthat/test-mlb_draft_prospects.R | 103 tests/testthat/test-mlb_event_types.R | 29 tests/testthat/test-mlb_fielder_detail_types.R | 27 tests/testthat/test-mlb_game_changes.R | 73 tests/testthat/test-mlb_game_content.R | 35 tests/testthat/test-mlb_game_context_metrics.R | 83 tests/testthat/test-mlb_game_info.R | 37 tests/testthat/test-mlb_game_linescore.R | 215 - tests/testthat/test-mlb_game_pace.R | 79 tests/testthat/test-mlb_game_pks.R | 63 tests/testthat/test-mlb_game_status_codes.R | 31 tests/testthat/test-mlb_game_timecodes.R | 31 tests/testthat/test-mlb_game_types.R | 27 tests/testthat/test-mlb_game_wp.R | 29 tests/testthat/test-mlb_high_low_stats.R | 89 tests/testthat/test-mlb_high_low_types.R | 29 tests/testthat/test-mlb_hit_trajectories.R | 27 tests/testthat/test-mlb_homerun_derby.R | 91 tests/testthat/test-mlb_homerun_derby_bracket.R | 65 tests/testthat/test-mlb_homerun_derby_players.R | 135 - tests/testthat/test-mlb_job_types.R | 27 tests/testthat/test-mlb_jobs.R | 39 tests/testthat/test-mlb_jobs_datacasters.R | 39 tests/testthat/test-mlb_jobs_official_scorers.R | 39 tests/testthat/test-mlb_jobs_umpires.R | 39 tests/testthat/test-mlb_languages.R | 27 tests/testthat/test-mlb_league.R | 81 tests/testthat/test-mlb_league_leader_types.R | 27 tests/testthat/test-mlb_logical_events.R | 27 tests/testthat/test-mlb_metrics.R | 27 tests/testthat/test-mlb_pbp.R | 315 +- tests/testthat/test-mlb_pbp_diff.R | 305 +- tests/testthat/test-mlb_pitch_codes.R | 45 tests/testthat/test-mlb_pitch_types.R | 27 tests/testthat/test-mlb_player_status_codes.R | 27 tests/testthat/test-mlb_positions.R | 35 tests/testthat/test-mlb_probables.R | 29 tests/testthat/test-mlb_review_reasons.R | 27 tests/testthat/test-mlb_roster_types.R | 29 tests/testthat/test-mlb_rosters.R | 33 tests/testthat/test-mlb_runner_detail_types.R | 27 tests/testthat/test-mlb_schedule.R | 79 tests/testthat/test-mlb_schedule_event_types.R | 27 tests/testthat/test-mlb_schedule_games_tied.R | 147 - tests/testthat/test-mlb_schedule_postseason.R | 157 - tests/testthat/test-mlb_schedule_postseason_series.R | 161 - tests/testthat/test-mlb_seasons.R | 67 tests/testthat/test-mlb_seasons_all.R | 67 tests/testthat/test-mlb_situation_codes.R | 31 tests/testthat/test-mlb_sky.R | 27 tests/testthat/test-mlb_sports.R | 29 tests/testthat/test-mlb_sports_info.R | 29 tests/testthat/test-mlb_sports_players.R | 125 tests/testthat/test-mlb_standings.R | 129 tests/testthat/test-mlb_standings_types.R | 27 tests/testthat/test-mlb_stat_groups.R | 27 tests/testthat/test-mlb_stat_types.R | 27 tests/testthat/test-mlb_teams.R | 55 tests/testthat/test-mlb_umpire_games.R | 155 - tests/testthat/test-mlb_venues.R | 27 tests/testthat/test-mlb_wind_direction_codes.R | 27 tests/testthat/test-ncaa_chromote.R |only tests/testthat/test-ncaa_lineups.R | 59 tests/testthat/test-ncaa_park_factor.R |only tests/testthat/test-ncaa_pbp.R | 53 tests/testthat/test-ncaa_roster.R | 53 tests/testthat/test-ncaa_schedule_info.R | 68 tests/testthat/test-ncaa_school_id_lu.R | 41 tests/testthat/test-ncaa_team_player_stats.R | 95 tests/testthat/test-ncaa_teams.R | 42 tests/testthat/test-sptrc_league_payrolls.R | 49 tests/testthat/test-sptrc_team_active_payroll.R | 56 tests/testthat/test-statcast_leaderboards.R | 63 tests/testthat/test-statcast_search.R | 119 709 files changed, 34161 insertions(+), 31217 deletions(-)
Title: Stream Network Movement Analyses
Description: Calculating home ranges and movements of animals in complex stream environments
is often challenging, and standard home range estimators do not apply. This
package provides a series of tools for assessing movements in a stream
network, such as calculating the total length of stream used, distances
between points, and movement patterns over time. See Vignette for additional
details. This package was originally released on 'GitHub' under the name 'SNM'.
SNMA was developed for analyses in McKnight et al. (2025) <doi:10.3354/esr01442>
which contains additional examples and information.
Author: Donald T. McKnight [aut, cre]
Maintainer: Donald T. McKnight <donald.mcknight@my.jcu.edu.au>
Diff between SNMA versions 0.1.5 dated 2026-02-04 and 0.1.7 dated 2026-08-26
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/movements.R | 5 ++++- inst/doc/SNMA_vignette.pdf |binary 4 files changed, 11 insertions(+), 8 deletions(-)
Title: Bayesian Calibrations of p-Values
Description: Implements transformations of p-values to the smallest possible Bayes factor within the specified class of alternative hypotheses, as described in Held & Ott (2018, <doi:10.1146/annurev-statistics-031017-100307>). Covers several common testing scenarios such as z-tests, t-tests, likelihood ratio tests and the F-test.
Author: Manuela Ott [aut, cre] ,
Leonhard Held [aut]
Maintainer: Manuela Ott <manuela.c.ott@gmail.com>
Diff between pCalibrate versions 0.2-1 dated 2020-03-19 and 0.2-2 dated 2026-08-26
DESCRIPTION | 12 - MD5 | 28 +-- NAMESPACE | 38 +--- R/helpers.R | 145 ++++++--------- R/twoby2Calibrate.R | 357 ++++++++++++++++++++------------------ build/partial.rdb |binary inst/CITATION | 37 +--- man/FCalibrate.Rd | 319 +++++++++++++++++----------------- man/LRCalibrate.Rd | 294 +++++++++++++++---------------- man/formatBF.Rd | 154 ++++++++-------- man/pCalibrate-package.Rd | 155 ++++++++-------- man/pCalibrate.Rd | 261 ++++++++++++++-------------- man/tCalibrate.Rd | 370 ++++++++++++++++++++-------------------- man/twoby2Calibrate.Rd | 423 ++++++++++++++++++++++------------------------ man/zCalibrate.Rd | 310 ++++++++++++++++----------------- 15 files changed, 1448 insertions(+), 1455 deletions(-)
More information about textclassificationtutorial at CRAN
Permanent link
Title: Marginalized Bayesian Item Parameter Estimation, 2pl Model IRT
Description: Estimates item parameters of the two-parameter logistic (2PL)
model in Item Response Theory (IRT) using the marginal Bayesian modal
estimation via the Expectation-Maximization (EM) algorithm. The package
calibrates item discrimination and difficulty parameters, yielding results
comparable to software like 'BILOG-MG'.
Author: Juan Luis Legorreta Torres [aut, cre]
Maintainer: Juan Luis Legorreta Torres <jlegorreta2002@yahoo.com.mx>
Diff between irtbem2pl versions 1.0.0 dated 2026-06-08 and 1.0.1 dated 2026-08-26
DESCRIPTION | 8 ++-- MD5 | 9 +++-- NEWS.md |only R/LikelihoodInfo2pl.R | 82 +++++++++++++++++++++++++++++--------------------- R/irt2pl.R | 58 ++++++++++++++++++++++++----------- R/irtchek2pl.R | 65 ++++++++++++++------------------------- 6 files changed, 120 insertions(+), 102 deletions(-)
More information about gpciLindApproxProgII at CRAN
Permanent link
Title: Smooth L0 Penalty Approximations for Gaussian Graphical Models
Description: Provides smooth approximations to the L0 norm penalty for
estimating sparse Gaussian graphical models (GGMs). Network estimation
is performed using the Local Linear Approximation (LLA) framework
(Fan & Li, 2001 <doi:10.1198/016214501753382273>;
Zou & Li, 2008 <doi:10.1214/009053607000000802>) with five penalty
functions: arctangent (Wang & Zhu, 2016 <doi:10.1155/2016/6495417>),
EXP (Wang, Fan, & Zhu, 2018 <doi:10.1007/s10463-016-0588-3>), Gumbel,
Log (Candes, Wakin, & Boyd, 2008 <doi:10.1007/s00041-008-9045-x>),
and Weibull. Adaptive penalty parameters for EXP, Gumbel, and Weibull
are estimated via maximum likelihood, and model selection uses
information criteria including AIC, BIC, and EBIC (Extended BIC).
Simulation functions generate multivariate normal data from GGMs with
stochastic block model or small-world (Watts-Strogatz) network structures.
Author: Alexander Christensen [aut, cre] ,
Jeongwon Choi [ctb] ,
John Fox [cph, ctb] ,
Yves Rosseel [cph, ctb] ,
Alan Genz [cph, ctb] in polychoric_matrix.c, translated via the
pbivnorm R package),
David Blackman [ctb] ,
Sebastiano Vigna [ctb] ,
John Burkar [...truncated...]
Maintainer: Alexander Christensen <alexpaulchristensen@gmail.com>
Diff between L0ggm versions 0.1.1 dated 2026-07-06 and 0.1.2 dated 2026-08-26
DESCRIPTION | 17 MD5 | 20 - NAMESPACE | 40 +- NEWS | 44 ++ R/derivatives.R | 21 - R/polychoric_matrix.R | 24 - R/proxswap_lattice.R | 23 - inst/COPYRIGHTS | 24 - man/polychoric_matrix.Rd | 22 - src/polychoric_matrix.c | 912 ++++++++++++++++++++++++++--------------------- src/polychoric_matrix.h | 46 +- 11 files changed, 703 insertions(+), 490 deletions(-)
Title: Conditional Standard Error of Measurement Tools for Test Scores
Description: Compute and compare conditional
standard errors of measurement (CSEM) across score distributions
using methods from classical test theory. Includes approaches for
smoothing, bootstrapped CSEM, standardized CSEM, CSEM for scale scores,
and assessment of properties of split-half scores. Also supports
comparison with global standard errors derived from reliability
coefficients and graphical visualization of CSEM curves and
relative precision across observed score ranges. Some of these implemented
methods are based on work by
Lord (1955) <doi:10.1002/j.2333-8504.1955.tb00054.x>,
Feldt and Qualls (1996) <doi:10.1111/j.1745-3984.1996.tb00486.x>,
McNeish and Dumas (2025) <doi:10.3758/s13428-025-02611-8>.
Author: Cesar Merino-Soto [aut, cre]
Maintainer: Cesar Merino-Soto <sikayax@yahoo.com.ar>
Diff between csemTools versions 0.1.4 dated 2026-07-29 and 0.2.1 dated 2026-08-26
DESCRIPTION | 16 +- MD5 | 60 +++++---- NAMESPACE | 131 ++++++++++++-------- NEWS.md |only R/checkAlpha.R | 12 - R/checkAngoff.R | 12 - R/checkCongeneric.R | 12 - R/checkDistribution.R | 12 - R/checkLocation.R | 12 - R/checkScale.R | 12 - R/checkSpearmanbrown.R | 12 - R/checkSplit.R | 16 -- R/csemMF.R | 16 -- R/csemStrong.R | 17 -- R/csemThorndike.R | 20 +-- R/curvesCSEMcomp.R |only R/rse_data.R |only R/stdCSEM.R | 9 + data |only man/checkAlpha.Rd | 108 ++++++++-------- man/checkAngoff.Rd | 124 +++++++++---------- man/checkCongeneric.Rd | 122 +++++++++--------- man/checkDistribution.Rd | 136 ++++++++++----------- man/checkLocation.Rd | 126 +++++++++---------- man/checkScale.Rd | 106 +++++++--------- man/checkSpearmanBrown.Rd | 106 +++++++--------- man/checkSplit.Rd | 118 ++++++++---------- man/csemMF.Rd | 226 +++++++++++++++++------------------ man/csemStrong.Rd | 17 -- man/csemThorndike.Rd | 210 +++++++++++++++----------------- man/curvesCSEMcomp.Rd |only man/print.csem_compare.Rd |only man/rse_data.Rd |only man/stdCSEM.Rd | 129 ++++++++++--------- tests/testthat/test-curvesCSEMcomp.R |only 35 files changed, 917 insertions(+), 980 deletions(-)
Title: Bayesian Analyses for One- and Two-Sample Inference and
Regression Methods
Description: Perform fundamental analyses using Bayesian parametric and non-parametric inference (regression, anova, 1 and 2 sample inference, non-parametric tests, etc.). (Practically) no Markov chain Monte Carlo (MCMC) is used; all exact finite sample inference is completed via closed form solutions or else through posterior sampling automated to ensure precision in interval estimate bounds. Diagnostic plots for model assessment, and key inferential quantities (point and interval estimates, probability of direction, region of practical equivalence, and Bayes factors) and model visualizations are provided. Bayes factors are computed either by the Savage Dickey ratio given in Dickey (1971) <doi:10.1214/aoms/1177693507> or by Chib's method as given in <doi:10.1080/01621459.1995.10476635>. Interpretations are from Kass and Raftery (1995) <doi:10.1080/01621459.1995.10476572>. ROPE bounds are based on discussions in Kruschke (2018) <doi:10.1177/2515245918771304>. Methods for d [...truncated...]
Author: Daniel K. Sewell [aut, cre, cph] ,
Alan Arakkal [aut]
Maintainer: Daniel K. Sewell <daniel-sewell@uiowa.edu>
Diff between bayesics versions 3.0.0 dated 2026-07-13 and 3.0.1 dated 2026-08-26
DESCRIPTION | 6 ++-- MD5 | 39 ++++++++++++++------------- NAMESPACE | 2 - NEWS.md | 7 ++++ R/IC.R | 30 --------------------- R/bayes_factors.R | 4 +- R/logLik.R | 2 + R/plot_bands.R | 2 - R/print.R | 8 ++--- R/summary.R | 42 +++++++++++++++++++++++++++-- man/IC.Rd | 6 ---- man/plot_bands.Rd | 4 +- man/summary.Rd | 4 +- tests/testthat/helper.R |only tests/testthat/test-aov_b.R | 23 +++++++--------- tests/testthat/test-bma_inference.R | 8 ++--- tests/testthat/test-glm_b.R | 48 ++++++++++++++-------------------- tests/testthat/test-lm_b.R | 33 +++++++++++------------ tests/testthat/test-mediate_b.R | 7 ++-- tests/testthat/test-np_glm_b.R | 22 +++++---------- tests/testthat/test-wilcoxon_test_b.R | 5 +-- 21 files changed, 145 insertions(+), 157 deletions(-)
Title: Quick and Essential 'R' Tricks for Better Scripts
Description: The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to improve your scripts. Improve the quality and reproducibility of 'R' scripts.
Author: Obinna Obianom [aut, cre],
Brice Richard [aut]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between quickcode versions 1.1.0 dated 2026-08-03 and 1.2.0 dated 2026-08-26
DESCRIPTION | 6 +- MD5 | 19 ++++--- NAMESPACE | 1 R/nm_scale.R |only inst/doc/add_today_date_to_filenames_quickcode.html | 54 ++++++++++---------- inst/doc/not_functions_data_validation_r.html | 4 - inst/doc/nullish_coalescing_operator_r.html | 4 - inst/doc/quickcode_r_introduction.html | 4 - inst/doc/super_variables_newSuperVar_r.html | 4 - inst/doc/track_function_usage_r.html | 4 - man/nonmem_scaling.Rd |only man/print.nonmem_scaling.Rd |only 12 files changed, 52 insertions(+), 48 deletions(-)
Title: Estimates and Plots Single-Level and Multilevel Latent Class
Models
Description: Efficiently estimates single- and multilevel latent class models with covariates, allowing for output visualization in all specifications. For more technical details, see Lyrvall et al. (2025) <doi:10.1080/00273171.2025.2473935>.
Author: Roberto Di Mari [aut, cre],
Johan Lyrvall [aut],
Zsuzsa Bakk [ctb],
Jennifer Oser [ctb],
Jouni Kuha [ctb]
Maintainer: Roberto Di Mari <roberto.dimari@unict.it>
Diff between multilevLCA versions 2.1.4 dated 2026-03-24 and 2.1.5 dated 2026-08-26
DESCRIPTION | 8 +++--- MD5 | 8 +++--- build/partial.rdb |binary src/LCAfit.cpp | 1 src/multilevLC_EM.cpp | 66 +++++++++++++++++++++++++------------------------- 5 files changed, 42 insertions(+), 41 deletions(-)
Title: A Lightweight Version of R Markdown
Description: Render R Markdown to Markdown (without using 'knitr'), and Markdown
to lightweight HTML or 'LaTeX' documents with the 'commonmark' package (instead
of 'Pandoc'). Some missing Markdown features in 'commonmark' are also
supported, such as raw HTML or 'LaTeX' blocks, 'LaTeX' math, superscripts,
subscripts, footnotes, element attributes, and appendices,
but not all 'Pandoc' Markdown features are (or will be) supported. With
additional JavaScript and CSS, you can also create HTML slides and articles.
This package can be viewed as a trimmed-down version of R Markdown and
'knitr'. It does not aim at rich Markdown features or a large variety of
output formats (the primary formats are HTML and 'LaTeX'). Book and website
projects of multiple input documents are also supported.
Author: Yihui Xie [aut, cre] ,
Tim Taylor [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between litedown versions 0.10 dated 2026-07-11 and 0.11 dated 2026-08-26
DESCRIPTION | 8 ++-- MD5 | 16 ++++----- NAMESPACE | 84 ++++++++++++++++++++++++++------------------------- NEWS.md | 6 +++ R/mark.R | 2 - R/package.R | 18 +++++++--- R/site.R | 6 ++- R/utils.R | 8 ++++ inst/doc/slides.html | 28 ++++++++--------- 9 files changed, 99 insertions(+), 77 deletions(-)
Title: Automatic Plotting and Theming of Many Graphs
Description: Visual exploration and presentation of networks should not be difficult.
This package includes functions for plotting networks and network-related metrics with sensible and pretty defaults.
It includes 'ggplot2'-based plot methods for many popular network package classes.
It also includes some novel layout algorithms, and options for straightforward, consistent themes.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between autograph versions 1.1.2 dated 2026-07-31 and 1.2.1 dated 2026-08-26
autograph-1.1.2/autograph/R/layout_grid.R |only autograph-1.1.2/autograph/R/layout_partition.R |only autograph-1.1.2/autograph/R/theme_palettes.R |only autograph-1.1.2/autograph/R/theme_set.R |only autograph-1.1.2/autograph/inst/autograph_old.png |only autograph-1.1.2/autograph/man/figures/README-layout-comparison-1.png |only autograph-1.1.2/autograph/man/figures/README-siena-ergm-gof-1.png |only autograph-1.1.2/autograph/man/figures/README-siena-ergm-gof-2.png |only autograph-1.1.2/autograph/man/figures/README-theme-opts-1.png |only autograph-1.1.2/autograph/man/figures/README-theme-opts-2.png |only autograph-1.1.2/autograph/man/figures/README-themeset-1.png |only autograph-1.1.2/autograph/man/figures/README-themeset-2.png |only autograph-1.1.2/autograph/man/figures/logo-old.png |only autograph-1.1.2/autograph/man/layout_partition.Rd |only autograph-1.1.2/autograph/tests/testthat/test-layout_partition.R |only autograph-1.2.1/autograph/DESCRIPTION | 14 autograph-1.2.1/autograph/MD5 | 171 autograph-1.2.1/autograph/NAMESPACE | 177 autograph-1.2.1/autograph/NEWS.md | 231 autograph-1.2.1/autograph/R/autograph-defunct.R |only autograph-1.2.1/autograph/R/autograph_utilities.R | 56 autograph-1.2.1/autograph/R/data_precooked.R | 44 autograph-1.2.1/autograph/R/graph_aes.R | 335 + autograph-1.2.1/autograph/R/graph_backbone.R |only autograph-1.2.1/autograph/R/graph_checks.R | 273 + autograph-1.2.1/autograph/R/graph_completion.R |only autograph-1.2.1/autograph/R/graph_costs.R |only autograph-1.2.1/autograph/R/graph_edges.R | 253 autograph-1.2.1/autograph/R/graph_labels.R | 232 autograph-1.2.1/autograph/R/graph_layout.R | 129 autograph-1.2.1/autograph/R/graph_legends.R | 41 autograph-1.2.1/autograph/R/graph_nodes.R | 178 autograph-1.2.1/autograph/R/graph_snap.R |only autograph-1.2.1/autograph/R/graphr.R | 391 + autograph-1.2.1/autograph/R/graphs.R | 65 autograph-1.2.1/autograph/R/grapht.R | 148 autograph-1.2.1/autograph/R/layout_concentric.R |only autograph-1.2.1/autograph/R/layout_configurational.R | 38 autograph-1.2.1/autograph/R/layout_correspondence.R |only autograph-1.2.1/autograph/R/layout_layered.R | 713 ++ autograph-1.2.1/autograph/R/layout_levels.R |only autograph-1.2.1/autograph/R/layout_matching.R | 21 autograph-1.2.1/autograph/R/layout_scaling.R |only autograph-1.2.1/autograph/R/layout_valence.R | 50 autograph-1.2.1/autograph/R/plot_analysis.R | 45 autograph-1.2.1/autograph/R/plot_convergence.R | 22 autograph-1.2.1/autograph/R/plot_diagnostics.R | 1022 +++- autograph-1.2.1/autograph/R/plot_gof.R | 56 autograph-1.2.1/autograph/R/plot_interp.R | 8 autograph-1.2.1/autograph/R/plot_manydata.R | 64 autograph-1.2.1/autograph/R/plot_summaries.R | 72 autograph-1.2.1/autograph/R/plot_tests.R | 6 autograph-1.2.1/autograph/R/theme_colorblind.R |only autograph-1.2.1/autograph/R/theme_fonts.R |only autograph-1.2.1/autograph/R/theme_medium.R |only autograph-1.2.1/autograph/R/theme_palette_get.R |only autograph-1.2.1/autograph/R/theme_palette_set.R |only autograph-1.2.1/autograph/R/zzz.R | 68 autograph-1.2.1/autograph/README.md | 155 autograph-1.2.1/autograph/data/goldfish_changepoints.rda |binary autograph-1.2.1/autograph/data/goldfish_fit.rda |only autograph-1.2.1/autograph/data/goldfish_gof.rda |only autograph-1.2.1/autograph/data/goldfish_margins.rda |only autograph-1.2.1/autograph/data/goldfish_onset.rda |only autograph-1.2.1/autograph/data/goldfish_outliers.rda |binary autograph-1.2.1/autograph/data/goldfish_time.rda |only autograph-1.2.1/autograph/inst/tutorials/autograph1/visualisation.Rmd | 848 +++ autograph-1.2.1/autograph/inst/tutorials/autograph1/visualisation.html | 2538 ++++++++-- autograph-1.2.1/autograph/man/ag_call.Rd | 57 autograph-1.2.1/autograph/man/check_layout.Rd |only autograph-1.2.1/autograph/man/completion.Rd |only autograph-1.2.1/autograph/man/count_pages.Rd |only autograph-1.2.1/autograph/man/depth_first_recursive_search.Rd | 2 autograph-1.2.1/autograph/man/layout_concentric.Rd |only autograph-1.2.1/autograph/man/layout_configuration.Rd | 43 autograph-1.2.1/autograph/man/layout_correspondence.Rd |only autograph-1.2.1/autograph/man/layout_deprecated.Rd |only autograph-1.2.1/autograph/man/layout_layered.Rd | 171 autograph-1.2.1/autograph/man/layout_levels.Rd |only autograph-1.2.1/autograph/man/layout_matching.Rd | 29 autograph-1.2.1/autograph/man/layout_scaling.Rd |only autograph-1.2.1/autograph/man/layout_valence.Rd | 36 autograph-1.2.1/autograph/man/list_fonts.Rd |only autograph-1.2.1/autograph/man/made_earlier.Rd | 29 autograph-1.2.1/autograph/man/plot_adequacy.Rd | 168 autograph-1.2.1/autograph/man/plot_goldfish_fit.Rd |only autograph-1.2.1/autograph/man/plot_graphr.Rd | 152 autograph-1.2.1/autograph/man/plot_graphs.Rd | 10 autograph-1.2.1/autograph/man/plot_grapht.Rd | 108 autograph-1.2.1/autograph/man/theme_colorblind.Rd |only autograph-1.2.1/autograph/man/theme_medium.Rd |only autograph-1.2.1/autograph/man/theme_set.Rd | 61 autograph-1.2.1/autograph/tests/testthat/Rplots.pdf |binary autograph-1.2.1/autograph/tests/testthat/helper-functional.R | 47 autograph-1.2.1/autograph/tests/testthat/helper-manynet.R |only autograph-1.2.1/autograph/tests/testthat/helper-tutorials.R | 19 autograph-1.2.1/autograph/tests/testthat/test-functional_aes.R | 4 autograph-1.2.1/autograph/tests/testthat/test-functional_coverage.R |only autograph-1.2.1/autograph/tests/testthat/test-functional_errors.R | 58 autograph-1.2.1/autograph/tests/testthat/test-functional_layouts.R | 320 - autograph-1.2.1/autograph/tests/testthat/test-functional_plots.R | 114 autograph-1.2.1/autograph/tests/testthat/test-functional_themes.R | 148 autograph-1.2.1/autograph/tests/testthat/test-graph_backbone.R |only autograph-1.2.1/autograph/tests/testthat/test-graph_completion.R |only autograph-1.2.1/autograph/tests/testthat/test-graph_snap.R |only autograph-1.2.1/autograph/tests/testthat/test-graphr.R | 364 + autograph-1.2.1/autograph/tests/testthat/test-grapht.R | 17 autograph-1.2.1/autograph/tests/testthat/test-layout_concentric.R |only autograph-1.2.1/autograph/tests/testthat/test-layout_correspondence.R |only autograph-1.2.1/autograph/tests/testthat/test-layout_layered.R |only autograph-1.2.1/autograph/tests/testthat/test-layout_levels.R |only autograph-1.2.1/autograph/tests/testthat/test-layout_scaling.R |only autograph-1.2.1/autograph/tests/testthat/test-layout_valence.R | 1 autograph-1.2.1/autograph/tests/testthat/test-plot_goldfish.R |only autograph-1.2.1/autograph/tests/testthat/test-theme_set.R | 15 115 files changed, 8847 insertions(+), 1590 deletions(-)
Title: Vectorised Computation of P-Values and Their Supports for
Several Discrete Statistical Tests
Description: Provides vectorised functions for computing p-values of various
common discrete statistical tests, as described e.g. in Agresti (2002)
<doi:10.1002/0471249688>, including their distributions. Exact and
approximate computation methods are provided. For exact ones, several
procedures of determining two-sided p-values are included, which are
outlined in more detail in Hirji (2006) <doi:10.1201/9781420036190>.
Author: Florian Junge [cre, aut] ,
Christina Kihn [aut],
Sebastian Doehler [ctb] ,
Guillermo Durand [ctb]
Maintainer: Florian Junge <diso.fbmn@h-da.de>
Diff between DiscreteTests versions 0.4.1 dated 2026-05-28 and 0.5.0 dated 2026-08-26
DESCRIPTION | 10 - MD5 | 40 ++--- NAMESPACE | 93 ++++++------ NEWS.md | 12 + R/RcppExports.R | 8 + R/internal.R | 44 +++++ R/mann-whitney.R | 245 ++++++++++++++++++++++++-------- R/wilcoxon.R | 328 ++++++++++++++++++++++++++++++++------------ build/partial.rdb |binary man/binom_test_pv.Rd | 4 man/fisher_test_pv.Rd | 4 man/homogeneity_test_pv.Rd | 8 - man/mann_whitney_test_pv.Rd | 20 +- man/mcnemar_test_pv.Rd | 4 man/perm_test_pv.Rd | 2 man/poisson_test_pv.Rd | 4 man/sign_test_pv.Rd | 6 man/wilcox_test_pv.Rd | 51 +++--- src/RcppExports.cpp | 25 +++ src/mann_whitney.cpp | 129 ++++++++++++++--- src/sign_rank.cpp | 48 +++++- 21 files changed, 786 insertions(+), 299 deletions(-)
Title: Linear Models for Sequence Count Data
Description: Provides scalable generalized linear and mixed effects models tailored for sequence count data analysis (e.g., analysis of 16S or RNA-seq data). Uses Dirichlet-multinomial sampling to quantify uncertainty in relative abundance or relative expression conditioned on observed count data.
Implements scale models as a generalization of normalizations which account for uncertainty in scale (e.g., total abundances) as described in Nixon et al. (2025) <doi:10.1186/s13059-025-03609-3> and McGovern et al. (2025) <doi:10.1101/2025.08.05.668734>.
Author: Justin Silverman [aut, cre],
Greg Gloor [aut],
Kyle McGovern [aut, ctb]
Maintainer: Justin Silverman <JustinSilverman@psu.edu>
Diff between ALDEx3 versions 1.2.0 dated 2026-07-15 and 1.3.1 dated 2026-08-26
DESCRIPTION | 6 MD5 | 40 +- NAMESPACE | 2 NEWS.md | 26 + R/aldex.R | 59 ++-- R/blmm.R | 2 R/scale.R | 534 +++++++++++++++++++++++++------------ README.md | 50 +-- build/vignette.rds |binary inst/doc/ALDEx3-Quickstart.Rmd | 64 ++-- inst/doc/ALDEx3-Quickstart.html | 178 ++++++------ inst/doc/ALDEx3-mixed-effects.html | 12 man/aldex.Rd | 58 ++-- man/clr.sm.Rd | 58 ++-- man/coefficient.sm.Rd | 92 ++++-- man/sample.sm.Rd | 94 ++++-- man/tss.sm.Rd | 56 ++- src/blmm.cpp | 1 tests/testthat/test-aldex_lm.R | 11 tests/testthat/test-scale.R | 229 +++++++++++---- vignettes/ALDEx3-Quickstart.Rmd | 64 ++-- 21 files changed, 1046 insertions(+), 590 deletions(-)
Title: Subject-Level Analysis Using 'metalite'
Description: Analyzes subject-level data in clinical trials using the 'metalite'
data structure. The package simplifies the workflow to create
production-ready tables, listings, and figures discussed in the
subject-level analysis chapters of
"R for Clinical Study Reports and Submission"
by Zhang et al. (2022) <https://r4csr.org/>.
Author: Yujie Zhao [aut, cre],
Benjamin Wang [aut],
Hiroaki Fukuda [aut],
PoYao Niu [aut],
Nan Xiao [aut],
Jeetener Chauhan [ctb],
Li Ma [ctb],
Chen Wang [ctb],
Merck Sharp & Dohme Corp [cph]
Maintainer: Yujie Zhao <yujie.zhao@merck.com>
Diff between metalite.sl versions 0.1.2 dated 2026-06-12 and 0.1.3 dated 2026-08-26
metalite.sl-0.1.2/metalite.sl/R/meta_sl_example.R |only metalite.sl-0.1.2/metalite.sl/man/meta_sl_example.Rd |only metalite.sl-0.1.2/metalite.sl/man/meta_sl_exposure_example.Rd |only metalite.sl-0.1.3/metalite.sl/DESCRIPTION | 6 metalite.sl-0.1.3/metalite.sl/MD5 | 166 +++---- metalite.sl-0.1.3/metalite.sl/NAMESPACE | 2 metalite.sl-0.1.3/metalite.sl/NEWS.md | 6 metalite.sl-0.1.3/metalite.sl/R/collect.R | 28 + metalite.sl-0.1.3/metalite.sl/R/extend_exp_duration.R | 22 metalite.sl-0.1.3/metalite.sl/R/format_base_char_subgroup.R | 27 + metalite.sl-0.1.3/metalite.sl/R/format_exp_duration.R | 21 metalite.sl-0.1.3/metalite.sl/R/format_sl_summary.R | 110 ++++ metalite.sl-0.1.3/metalite.sl/R/plotly_exp_duration.R | 22 metalite.sl-0.1.3/metalite.sl/R/prepare_base_char.R | 29 + metalite.sl-0.1.3/metalite.sl/R/prepare_base_char_subgroup.R | 28 + metalite.sl-0.1.3/metalite.sl/R/prepare_disposition.R | 36 + metalite.sl-0.1.3/metalite.sl/R/prepare_exp_duration.R | 22 metalite.sl-0.1.3/metalite.sl/R/prepare_sl_summary.R | 30 + metalite.sl-0.1.3/metalite.sl/R/prepare_trt_compliance.R | 37 + metalite.sl-0.1.3/metalite.sl/R/react_base_char.R | 74 +++ metalite.sl-0.1.3/metalite.sl/R/react_disposition.R | 77 +++ metalite.sl-0.1.3/metalite.sl/R/rtf_base_char_subgroup.R | 19 metalite.sl-0.1.3/metalite.sl/R/rtf_exp_duration.R | 21 metalite.sl-0.1.3/metalite.sl/R/rtf_sl_summary.R | 88 +++ metalite.sl-0.1.3/metalite.sl/README.md | 36 + metalite.sl-0.1.3/metalite.sl/build/vignette.rds |binary metalite.sl-0.1.3/metalite.sl/inst/doc/baseline-character.html | 8 metalite.sl-0.1.3/metalite.sl/inst/doc/disposition.html | 7 metalite.sl-0.1.3/metalite.sl/inst/doc/exp_duration.Rmd | 4 metalite.sl-0.1.3/metalite.sl/inst/doc/exp_duration.html | 12 metalite.sl-0.1.3/metalite.sl/inst/doc/exposure-duration-histogram.Rmd | 8 metalite.sl-0.1.3/metalite.sl/inst/doc/exposure-duration-histogram.html | 37 - 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Title: Decision Tree Analysis for Longitudinal Measurement Data
Description: Implements tree-based methods for longitudinal data.
The package constructs decision trees that evaluate both the main
effect of a covariate and its interaction with time through a
weighted splitting criterion. It supports single-tree construction,
bootstrap-based multiple-tree selection, and tree visualisation.
For methodological details, see Obata and Sugimoto (2026)
<doi:10.1007/s11634-025-00665-2>.
Author: Ryoto Obata [aut, cre],
Tomoyuki Sugimoto [aut]
Maintainer: Ryoto Obata <ryoto.obata@gmail.com>
Diff between longitree versions 1.0.1 dated 2026-05-16 and 1.0.2 dated 2026-08-26
DESCRIPTION | 6 ++--- MD5 | 11 +++++---- NEWS.md | 4 +++ src/longitree_program.f90 | 44 ++++++++++----------------------------- src/rng.c |only tests/testthat/test-longitree.R | 15 +++++++++++++ tests/testthat/test-threetrees.R | 19 ++++++++++++++++ 7 files changed, 59 insertions(+), 40 deletions(-)
Title: Conditional Inference Trees with Stacked Multiple Imputation
Description: Implements the stacked-imputation workflow for conditional
inference trees ('ctree') described in Sherlock et al. (2026)
<doi:10.1080/00273171.2026.2661244>. When data contain missing values,
multiply imputed datasets (e.g., from 'mice') are stacked vertically
and a single 'ctree' is fit on the combined data. To correct for the
artificially inflated sample size introduced by stacking, every
node-level test statistic is divided by the number of imputations M,
the node-level p-values are recomputed from the chi-squared reference
distribution 'ctree' uses (including its multiplicity adjustment across
candidate splitting variables), and the tree is compressed bottom-up
(the Stack/M correction). Degrees of freedom are derived for each node
and each candidate variable, so univariate, bivariate and
higher-dimensional outcomes are all handled, as are unordered factor
predictors, whose degrees of freedom depend on how many levels remain
in a node. The result is a single interpretable tree [...truncated...]
Author: Phillip Sherlock [aut, cre]
Maintainer: Phillip Sherlock <phillip.sherlock@ufl.edu>
Diff between ctreeMI versions 1.0.0 dated 2026-07-27 and 1.0.1 dated 2026-08-26
DESCRIPTION | 12 +++---- MD5 | 8 ++--- NEWS.md | 30 +++++++------------ R/ctree_stacked.R | 80 +++++++++++++++++++++++++++++++++++++++++++++++++-- man/ctree_stacked.Rd | 80 +++++++++++++++++++++++++++++++++++++++++++++++++-- 5 files changed, 177 insertions(+), 33 deletions(-)
Title: Biodiversity Assessment Tools
Description: Includes algorithms to assess alpha and beta diversity
in all their dimensions (taxonomic, phylogenetic and functional).
It allows performing a number of analyses based on species
identities/abundances, phylogenetic/functional distances, trees,
convex-hulls or kernel density n-dimensional hypervolumes
depicting species relationships.
Cardoso et al. (2015) <doi:10.1111/2041-210X.12310>.
Author: Pedro Cardoso [aut, cre],
Stefano Mammola [aut],
Francois Rigal [aut],
Renato Hilario [aut],
Jose Carvalho [aut]
Maintainer: Pedro Cardoso <pmcardoso@ciencias.ulisboa.pt>
Diff between BAT versions 2.11.1 dated 2026-03-30 and 2.11.3 dated 2026-08-26
DESCRIPTION | 12 ++++++------ MD5 | 10 +++++----- NAMESPACE | 20 ++++++++++++-------- R/BAT.R | 50 ++++++++++++++++++++++++++++++++------------------ man/accuracy.Rd | 5 ++++- man/standard.Rd | 3 ++- 6 files changed, 61 insertions(+), 39 deletions(-)
Title: Tools for Trade Practitioners
Description: A collection of tools for trade practitioners, including the ability to calibrate different consumer demand systems and simulate the effects of tariffs and quotas under different competitive regimes. These tools are derived from Anderson et al. (2001) <doi:10.1016/S0047-2727(00)00085-2> and Froeb et al. (2003) <doi:10.1016/S0304-4076(02)00166-5>.
Author: Charles Taragin [aut, cre]
Maintainer: Charles Taragin <ctaragin+trader@gmail.com>
Diff between trade versions 0.8.3 dated 2025-09-06 and 0.8.6 dated 2026-08-26
DESCRIPTION | 23 MD5 | 73 NAMESPACE | 25 R/HypoMonMethods.R | 2 R/QuotaClasses.R | 20 R/SimFunctions.R | 163 - R/TariffClasses.R | 171 - R/auction2nd_tariff.R | 51 R/bargaining_tariff.R | 52 R/bertrand_quota.R | 128 R/bertrand_tariff.R | 69 R/cournot_tariff.R | 23 R/initialize-methods.R | 30 R/logit_cournot_tariff.R |only R/monopolistic_competition_tariff.R | 22 R/ps-methods.R | 100 R/reexports.R |only R/summary-methods.R | 42 R/trade-deprecated.R | 4 R/trade-utils.R |only build/vignette.rds |binary inst/doc/Reference.Rmd | 80 inst/doc/Reference.html | 4452 ++++++++++++++++----------------- man/Sim-Functions.Rd | 16 man/Tariff-classes.Rd | 4 man/antitrust-reexports.Rd |only man/auction2nd_tariff.Rd | 17 man/bargaining_tariff.Rd | 4 man/bertrand_quota.Rd | 17 man/bertrand_tariff.Rd | 5 man/cournot_tariff.Rd | 4 man/defineMarketTools-methods.Rd | 2 man/initialize-methods.Rd | 3 man/logit_cournot_tariff.Rd |only man/monopolistic_competition_tariff.Rd | 2 man/ps-methods.Rd | 3 man/summary-methods.Rd | 15 man/trade-deprecated.Rd | 2 tests |only vignettes/Reference.Rmd | 80 40 files changed, 2936 insertions(+), 2768 deletions(-)
Title: MASCOTNUM / RT-UQ Algorithms Template Tools
Description: Helper functions for MASCOTNUM / RT-UQ <https://uq.math.cnrs.fr/> algorithm template, for design of numerical experiments practice:
algorithm template parser to support MASCOTNUM specification <https://github.com/MASCOTNUM/algorithms>,
'ask & tell' decoupling injection (inspired by <https://search.r-project.org/CRAN/refmans/sensitivity/html/decoupling.html>)
to use "crimped" algorithms (like uniroot(), optim(), ...) from outside R,
basic template examples: Brent algorithm for 1 dim root finding and L-BFGS-B from base optim().
Author: Yann Richet [aut, cre]
Maintainer: Yann Richet <yann.richet@asnr.fr>
Diff between templr versions 0.2-3 dated 2026-01-13 and 0.2-4 dated 2026-08-26
DESCRIPTION | 16 +++---- MD5 | 36 ++++++++-------- R/algorithm.R | 59 ++++++++++---------------- R/asktell.R | 63 +++++++++++++--------------- R/bounds.R | 18 +++++++- R/import.R | 38 ++++++++++++++-- inst/BFGS.R | 4 - man/ask_X.Rd | 2 man/ask_Y.Rd | 2 man/ask_dX.Rd | 2 man/ask_dY.Rd | 2 man/import.Rd | 9 +++- man/run.algorithm.Rd | 3 + tests/testthat.R |only tests/testthat/test-algorithm-BFGS.R | 3 + tests/testthat/test-algorithm-Brent.R | 2 tests/testthat/test-algorithm-overwrite.R |only tests/testthat/test-asktell-force-cleanup.R |only tests/testthat/test-asktell.R | 2 tests/testthat/test-bounds.R |only tests/testthat/test-import.R | 30 +++++++++++++ 21 files changed, 184 insertions(+), 107 deletions(-)
Title: 'linl' is not 'Letter'
Description: A 'LaTeX' Letter class for 'rmarkdown', using the
'pandoc-letter' template adapted for use with 'markdown'.
Author: Dirk Eddelbuettel [aut, cre] ,
Aaron Wolen [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between linl versions 0.0.5 dated 2023-01-11 and 0.0.6 dated 2026-08-26
ChangeLog | 33 ++++++++++++++++++++ DESCRIPTION | 18 +++++++--- MD5 | 22 ++++++------- R/linl.R | 2 - README.md | 20 +++++++----- build/vignette.rds |binary inst/NEWS.Rd | 7 ++++ inst/doc/linl.Rmd | 1 inst/doc/linl.pdf |binary inst/rmarkdown/templates/pdf/resources/template.tex | 2 - man/linl.Rd | 2 - vignettes/linl.Rmd | 1 12 files changed, 81 insertions(+), 27 deletions(-)
Title: Methods Based on the e-Closure Principle
Description: Implements several methods for False Discovery Rate control based on the e-Closure Principle,
in particular the Closed Benjamini-Hochberg, Closed e-Benjamini-Hochberg and Closed Benjamini-Yekutieli procedures.
Author: Jelle Goeman [aut, cre]
Maintainer: Jelle Goeman <j.j.goeman@lumc.nl>
Diff between eClosure versions 0.9.5 dated 2026-06-01 and 0.9.6 dated 2026-08-26
ChangeLog | 5 ++++- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/cBH_wrapper.R | 4 ++++ inst/CITATION | 2 +- 5 files changed, 17 insertions(+), 10 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-10-25 1.0.0
Title: Regularized Point Processes and Stochastic Marginalization for
Extremes
Description: Implements a non-stationary extreme value analysis framework
by coupling a covariate-driven Non-Homogeneous Poisson Process (NHPP)
with Elastic-Net regularization and exact analytical gradients. Provides
methodologies for estimating conditional return levels and unconditional
(marginalized) return levels via parametric stochastic integration over
Vector Autoregressive VAR(p) covariate trajectories, or non-parametric
annual-block resampling. Temporal resolution and active-set tolerances are
propagated consistently through fitting, marginalization, simulation, and
validation. Methodologies are based on Villa (2026)
<https://sabi.ufrgs.br/> "A Novel Regularized Point Process and Stochastic
Marginalization Framework for Return Level Inference under Covariate-Driven
Extremes" (Master's dissertation, Universidade Federal do Rio Grande do Sul).
Author: Rodrigo Fonseca Villa [aut, cre] ,
Flavio Ziegelmann [aut, ths]
Maintainer: Rodrigo Fonseca Villa <rodrigo03.villa@gmail.com>
Diff between margEVT versions 0.1.1 dated 2026-07-30 and 0.2.0 dated 2026-08-26
DESCRIPTION | 14 ++-- MD5 | 61 +++++++++--------- NEWS.md |only R/backtest.R | 108 ++++++++++++++++++++++---------- R/bootstrap.R | 110 +++++++++++++++++++++----------- R/covariate.R | 92 +++++++++++++++++++-------- R/fit.R | 80 ++++++++++++++++++++--- R/generator.R | 114 +++++++++++++++++++++++++-------- R/marginalize.R | 128 +++++++++++++++++++++++++++++--------- R/select.R | 4 - R/utils.R | 67 +++++++++++++++++-- README.md | 42 +++++------- man/active_covariates.Rd | 5 - man/backtest.Rd | 25 +++++-- man/bic_nhpp.Rd | 5 - man/bootstrap_coef.Rd | 4 - man/bootstrap_rl.Rd | 10 ++ man/build_cov_annual.Rd | 14 ++-- man/dot-select_lambda_bic.Rd | 3 man/fit_nhpp.Rd | 5 + man/fit_var_generator.Rd | 11 +-- man/marginalize.Rd | 9 ++ man/simulate_covariates.Rd | 12 ++- man/summary.nhpp_fit.Rd | 5 - tests/testthat/test-backtest.R | 47 ++++++++++++- tests/testthat/test-bootstrap.R | 32 +++++++++ tests/testthat/test-covariate.R | 95 +++++++++++++++++++++++++++- tests/testthat/test-fit.R | 98 ++++++++++++++++++++++++++++- tests/testthat/test-generator.R | 66 +++++++++++++++++++ tests/testthat/test-marginalize.R | 111 ++++++++++++++++++++++++++++++++ tests/testthat/test-select.R | 30 ++++++++ tests/testthat/test-utils.R | 93 +++++++++++++++++++++++++++ 32 files changed, 1226 insertions(+), 274 deletions(-)
Title: Summarizing Graphs for Literature Reviews
Description: Summarizes and visualizes categorical data extracted during
literature reviews and evidence syntheses, starting from a data frame with
one row per study. Generates publication-ready bar, stacked bar, histogram,
waffle, donut, treemap, alluvial, trend, co-occurrence, 'UpSet', tree, and
study-by-criteria matrix figures, together with world maps and formatted
summary tables. Plot functions return standard 'ggplot2' objects that can
be further customized, and an interactive 'Shiny' application is included
for building figures without writing code. Aims to help researchers report
study characteristics consistently across many publications.
Author: Sonsoles Lopez-Pernas [aut, cre, cph],
Kamila Misiejuk [aut],
Mohammed Saqr [aut]
Maintainer: Sonsoles Lopez-Pernas <sonsoles.lopez@uef.fi>
Diff between litReview versions 1.0.0 dated 2026-08-07 and 1.1.0 dated 2026-08-26
DESCRIPTION | 18 ++--- MD5 | 39 ++++++----- NAMESPACE | 8 +- R/bar_endcap.R |only R/fittext.R |only R/review_alluvial.R | 4 - R/review_bar.R | 56 ++++++++-------- R/review_overlap.R | 3 R/review_table.R | 8 +- R/richtext.R |only inst/doc/litReview.R | 6 - inst/doc/litReview.Rmd | 6 - inst/doc/litReview.html | 132 +++++++++++++++++++------------------- inst/shiny/litReview/app.R | 17 ++-- man/PALETTE.Rd | 9 -- man/litReview-package.Rd | 1 man/reviewBar.Rd | 4 - man/reviewTable.Rd | 6 + tests/testthat/test-analysis.R | 3 tests/testthat/test-edge-cases.R | 22 ++++-- tests/testthat/test-na-handling.R | 2 vignettes/litReview.Rmd | 6 - 22 files changed, 186 insertions(+), 164 deletions(-)
Title: Chinese Text Segmentation, POS Tagging, and Keyword Extraction
Description: Provides fast Chinese text segmentation, keyword extraction
via 'TF-IDF' and 'TextRank', and part-of-speech tagging, powered by a
'Rust' backend ('jieba-rs'). Supports custom dictionaries, user words,
stop words, IDF files, and HMM models, with parallel batch processing
of multiple strings. Serves as a modern, maintained replacement for
the 'jiebaR' package.
Author: Hao Cheng [aut, cre, cph]
Maintainer: Hao Cheng <Yousa-Mirage@foxmail.com>
Diff between jiebaRS versions 0.2.0 dated 2026-08-04 and 0.3.0 dated 2026-08-26
jiebaRS-0.2.0/jiebaRS/man/add_user_words.Rd |only jiebaRS-0.2.0/jiebaRS/man/get_tuple.Rd |only jiebaRS-0.2.0/jiebaRS/man/keywords_worker.Rd |only jiebaRS-0.2.0/jiebaRS/man/new_worker.Rd |only jiebaRS-0.2.0/jiebaRS/man/segment_batch_worker.Rd |only jiebaRS-0.2.0/jiebaRS/man/segment_worker.Rd |only jiebaRS-0.2.0/jiebaRS/man/tagging_batch_worker.Rd |only jiebaRS-0.2.0/jiebaRS/man/tagging_worker.Rd |only jiebaRS-0.2.0/jiebaRS/man/textrank_worker.Rd |only jiebaRS-0.3.0/jiebaRS/DESCRIPTION | 11 - jiebaRS-0.3.0/jiebaRS/MD5 | 90 +++++------ jiebaRS-0.3.0/jiebaRS/NAMESPACE | 3 jiebaRS-0.3.0/jiebaRS/NEWS.md | 86 +++++++++- jiebaRS-0.3.0/jiebaRS/R/cidian.R |only jiebaRS-0.3.0/jiebaRS/R/extendr-wrappers.R | 37 ++++ jiebaRS-0.3.0/jiebaRS/R/filter.R | 6 jiebaRS-0.3.0/jiebaRS/R/get-idf.R | 6 jiebaRS-0.3.0/jiebaRS/R/keywords.R | 5 jiebaRS-0.3.0/jiebaRS/R/ngrams.R | 103 ------------- jiebaRS-0.3.0/jiebaRS/R/stopwords.R |only jiebaRS-0.3.0/jiebaRS/R/textrank.R | 5 jiebaRS-0.3.0/jiebaRS/R/user-dict.R | 6 jiebaRS-0.3.0/jiebaRS/R/worker.R | 5 jiebaRS-0.3.0/jiebaRS/README.md | 59 +++++-- jiebaRS-0.3.0/jiebaRS/data |only jiebaRS-0.3.0/jiebaRS/inst/WORDLIST | 9 + jiebaRS-0.3.0/jiebaRS/man/count_ngrams.Rd | 22 -- jiebaRS-0.3.0/jiebaRS/man/filter_segment.Rd | 5 jiebaRS-0.3.0/jiebaRS/man/get_idf.Rd | 5 jiebaRS-0.3.0/jiebaRS/man/import_cidian.Rd |only jiebaRS-0.3.0/jiebaRS/man/keywords_df.Rd | 4 jiebaRS-0.3.0/jiebaRS/man/new_user_word.Rd | 7 jiebaRS-0.3.0/jiebaRS/man/read_cidian.Rd |only jiebaRS-0.3.0/jiebaRS/man/stopwords.Rd |only jiebaRS-0.3.0/jiebaRS/man/textrank_df.Rd | 4 jiebaRS-0.3.0/jiebaRS/man/worker.Rd | 4 jiebaRS-0.3.0/jiebaRS/src/Makevars.win.in | 12 + jiebaRS-0.3.0/jiebaRS/src/rust/Cargo.lock | 41 ++++- jiebaRS-0.3.0/jiebaRS/src/rust/Cargo.toml | 33 ++-- jiebaRS-0.3.0/jiebaRS/src/rust/src/cidian.rs |only jiebaRS-0.3.0/jiebaRS/src/rust/src/lib.rs | 57 +++++++ jiebaRS-0.3.0/jiebaRS/src/rust/src/worker.rs | 2 jiebaRS-0.3.0/jiebaRS/src/rust/vendor.tar.xz |binary jiebaRS-0.3.0/jiebaRS/tests/testthat/_snaps/cidian.md |only jiebaRS-0.3.0/jiebaRS/tests/testthat/_snaps/ngrams.md | 8 - jiebaRS-0.3.0/jiebaRS/tests/testthat/_snaps/user-word.md | 2 jiebaRS-0.3.0/jiebaRS/tests/testthat/test-cidian.R |only jiebaRS-0.3.0/jiebaRS/tests/testthat/test-filter-segment.R | 37 ---- jiebaRS-0.3.0/jiebaRS/tests/testthat/test-ngrams.R | 46 ----- jiebaRS-0.3.0/jiebaRS/tests/testthat/test-segment.R | 10 - jiebaRS-0.3.0/jiebaRS/tests/testthat/test-stopword.R | 13 + jiebaRS-0.3.0/jiebaRS/tests/testthat/test-tagging.R | 23 -- jiebaRS-0.3.0/jiebaRS/tests/testthat/test-user-word.R | 18 +- jiebaRS-0.3.0/jiebaRS/tools/config.R | 21 ++ 54 files changed, 439 insertions(+), 366 deletions(-)
Title: A Unified Data Layer for Large-Scale Single-Cell, Spatial and
Bulk Immunomics
Description: Provides a unified data layer for single-cell, spatial and bulk
T-cell and B-cell immune receptor repertoire data. Think AnnData or SeuratObject,
but for AIRR data, a.k.a. Adaptive Immune Receptor Repertoire, VDJ-seq, RepSeq, or
VDJ sequencing data.
Author: Vadim I. Nazarov [aut, cre]
Maintainer: Vadim I. Nazarov <support@immunomind.com>
Diff between immundata versions 0.0.7 dated 2026-04-04 and 0.1.0 dated 2026-08-26
immundata-0.0.7/immundata/R/io_annotations_write.R |only immundata-0.0.7/immundata/R/io_metadata_read.R |only immundata-0.0.7/immundata/R/io_repertoires_utils.R |only immundata-0.0.7/immundata/R/operations_concat.R |only immundata-0.0.7/immundata/R/operations_utils_levenshtein.R |only immundata-0.0.7/immundata/R/test_utils.R |only immundata-0.0.7/immundata/inst/extdata/single_cell/metadata.tsv |only immundata-0.0.7/immundata/inst/extdata/tsv/metadata.tsv |only immundata-0.0.7/immundata/man/get_test_immundata.Rd |only immundata-0.0.7/immundata/man/read_metadata.Rd |only immundata-0.1.0/immundata/DESCRIPTION | 15 immundata-0.1.0/immundata/MD5 | 178 - immundata-0.1.0/immundata/NAMESPACE | 163 - immundata-0.1.0/immundata/NEWS.md |only immundata-0.1.0/immundata/R/core_immundata.R | 318 ++- immundata-0.1.0/immundata/R/globals.R | 159 + immundata-0.1.0/immundata/R/immundata-package.R | 4 immundata-0.1.0/immundata/R/io_immundata_conversion.R | 18 immundata-0.1.0/immundata/R/io_immundata_read.R | 254 +- immundata-0.1.0/immundata/R/io_immundata_read_utils.R | 275 +- immundata-0.1.0/immundata/R/io_immundata_write.R | 180 - immundata-0.1.0/immundata/R/io_immundata_write_internal.R | 144 - immundata-0.1.0/immundata/R/io_immundata_write_utils.R | 465 ---- immundata-0.1.0/immundata/R/io_immundata_write_utils_provenance.R |only immundata-0.1.0/immundata/R/io_immundata_write_utils_snapshots.R |only immundata-0.1.0/immundata/R/io_manifest_read.R |only immundata-0.1.0/immundata/R/io_repertoires_processing.R | 171 + immundata-0.1.0/immundata/R/io_repertoires_read.R | 875 ++++++-- immundata-0.1.0/immundata/R/operations_agg_receptors.R | 279 +- immundata-0.1.0/immundata/R/operations_agg_repertoires.R | 257 +- immundata-0.1.0/immundata/R/operations_agg_strata.R | 238 +- immundata-0.1.0/immundata/R/operations_annotate.R | 356 ++- immundata-0.1.0/immundata/R/operations_compute_collect.R | 10 immundata-0.1.0/immundata/R/operations_count.R | 63 immundata-0.1.0/immundata/R/operations_downsample.R | 267 +- immundata-0.1.0/immundata/R/operations_filter.R | 332 +-- immundata-0.1.0/immundata/R/operations_mutate.R | 449 +++- immundata-0.1.0/immundata/R/operations_print.R | 62 immundata-0.1.0/immundata/R/operations_utils.R | 428 ---- immundata-0.1.0/immundata/R/utils_schema.R |only immundata-0.1.0/immundata/R/utils_seq.R |only immundata-0.1.0/immundata/R/utils_test.R |only immundata-0.1.0/immundata/R/zzz.R | 8 immundata-0.1.0/immundata/README.md | 237 +- immundata-0.1.0/immundata/inst/extdata/parquet |only immundata-0.1.0/immundata/inst/extdata/single_cell/manifest.csv |only immundata-0.1.0/immundata/inst/extdata/tsv/manifest.csv |only immundata-0.1.0/immundata/man/IMD_GLOBALS.Rd | 11 immundata-0.1.0/immundata/man/ImmunData.Rd | 312 ++- immundata-0.1.0/immundata/man/agg_receptors.Rd | 183 - immundata-0.1.0/immundata/man/agg_repertoires.Rd | 204 +- immundata-0.1.0/immundata/man/agg_strata.Rd | 87 immundata-0.1.0/immundata/man/annotate_immundata.Rd | 337 ++- immundata-0.1.0/immundata/man/collect.ImmunData.Rd | 2 immundata-0.1.0/immundata/man/compute.ImmunData.Rd | 3 immundata-0.1.0/immundata/man/count.ImmunData.Rd | 62 immundata-0.1.0/immundata/man/downsample_immundata.Rd | 136 + immundata-0.1.0/immundata/man/filter_immundata.Rd | 284 +- immundata-0.1.0/immundata/man/from_immunarch.Rd | 2 immundata-0.1.0/immundata/man/get_test_idata.Rd | 2 immundata-0.1.0/immundata/man/imd_input_columns.Rd |only immundata-0.1.0/immundata/man/imd_schema.Rd | 68 immundata-0.1.0/immundata/man/imd_schema_sym.Rd |only immundata-0.1.0/immundata/man/immundata-package.Rd | 5 immundata-0.1.0/immundata/man/make_receptor_schema.Rd | 127 + immundata-0.1.0/immundata/man/make_seq_options.Rd | 39 immundata-0.1.0/immundata/man/mutate_immundata.Rd | 337 ++- immundata-0.1.0/immundata/man/preprocess_postprocess.Rd | 175 + immundata-0.1.0/immundata/man/print.ImmunData.Rd |only immundata-0.1.0/immundata/man/read_immundata.Rd | 165 - immundata-0.1.0/immundata/man/read_manifest.Rd |only immundata-0.1.0/immundata/man/read_repertoires.Rd | 466 ++-- immundata-0.1.0/immundata/man/rename_strata.Rd | 88 immundata-0.1.0/immundata/man/write_immundata.Rd | 187 - immundata-0.1.0/immundata/tests/testthat.R | 11 immundata-0.1.0/immundata/tests/testthat/helper-data.R |only immundata-0.1.0/immundata/tests/testthat/helper-io.R | 209 +- immundata-0.1.0/immundata/tests/testthat/setup.R |only immundata-0.1.0/immundata/tests/testthat/test-agg-strata.R | 88 immundata-0.1.0/immundata/tests/testthat/test-annotate-barcodes.R | 2 immundata-0.1.0/immundata/tests/testthat/test-annotate-external.R | 8 immundata-0.1.0/immundata/tests/testthat/test-annotate-immundata.R | 401 +++ immundata-0.1.0/immundata/tests/testthat/test-annotate-receptors.R | 40 immundata-0.1.0/immundata/tests/testthat/test-audit-edge-cases.R |only immundata-0.1.0/immundata/tests/testthat/test-compute-collect-immundata.R | 47 immundata-0.1.0/immundata/tests/testthat/test-core-immundata.R |only immundata-0.1.0/immundata/tests/testthat/test-downsample.R | 1012 +++++----- immundata-0.1.0/immundata/tests/testthat/test-filter-barcodes.R | 2 immundata-0.1.0/immundata/tests/testthat/test-filter-immundata-exact.R | 26 immundata-0.1.0/immundata/tests/testthat/test-filter-immundata-hamm.R | 30 immundata-0.1.0/immundata/tests/testthat/test-filter-immundata-lev.R | 82 immundata-0.1.0/immundata/tests/testthat/test-filter-immundata-regex.R | 2 immundata-0.1.0/immundata/tests/testthat/test-filter-immundata.R | 100 immundata-0.1.0/immundata/tests/testthat/test-filter-receptors.R | 2 immundata-0.1.0/immundata/tests/testthat/test-io-immundata.R | 672 +++++- immundata-0.1.0/immundata/tests/testthat/test-io-repertoires-agg.R | 146 + immundata-0.1.0/immundata/tests/testthat/test-io-repertoires-counts.R | 143 - immundata-0.1.0/immundata/tests/testthat/test-io-repertoires-files.R | 473 ++++ immundata-0.1.0/immundata/tests/testthat/test-io-repertoires-processing.R | 8 immundata-0.1.0/immundata/tests/testthat/test-io-repertoires-schema-paired.R | 28 immundata-0.1.0/immundata/tests/testthat/test-io-repertoires-schema-single.R | 39 immundata-0.1.0/immundata/tests/testthat/test-io-repertoires-schema.R | 20 immundata-0.1.0/immundata/tests/testthat/test-mutate-immundata.R |only immundata-0.1.0/immundata/tests/testthat/test-verbosity.R |only 104 files changed, 8626 insertions(+), 4452 deletions(-)
Title: Draw Beautiful Symbol Nomenclature for Glycans
Description: A 'ggplot2'-native plotting engine for drawing reproducible beautiful
Symbol Nomenclature for Glycans (SNFG) glycan cartoons from glycan structure
objects or text notations, with support for batch export, structural
highlighting, and deep appearance customization. It follows the SNFG
specification described at <https://www.ncbi.nlm.nih.gov/glycans/snfg.html>.
Author: Bin Fu [aut, cre, cph] ,
Xisong Feng [aut]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>
Diff between glydraw versions 0.8.0 dated 2026-08-02 and 0.9.0 dated 2026-08-26
DESCRIPTION | 11 MD5 | 53 - NEWS.md | 8 R/draw-cartoon.R | 5 R/glycan-grob.R | 24 R/internal-annotations.R | 379 +++++++--- R/internal-cartoon.R | 254 ++++++ R/internal-coordinates.R | 11 R/internal-data.R | 45 + R/internal-floating-parts.R |only R/internal-grid.R | 43 + R/internal-sketch.R | 38 - R/style-glydraw.R | 8 inst/doc/glydraw.html | 2 man/draw_cartoon.Rd | 5 man/draw_cartoon_sketch.Rd | 5 man/export_cartoons.Rd | 5 man/geom_glycan.Rd | 5 man/glycanGrob.Rd | 5 man/style_glydraw.Rd | 8 tests/testthat/_snaps/cases/alditol.svg |only tests/testthat/_snaps/cases/explicit-floating-part.svg |only tests/testthat/_snaps/cases/implicit-floating-part.svg |only tests/testthat/_snaps/cases/multiple-floating-parts.svg |only tests/testthat/_snaps/cases/repeated-floating-part.svg |only tests/testthat/_snaps/cases/substituent-annotation-avoids-fuc-like-branch.svg |only tests/testthat/_snaps/cases/unusual-and-furanose-residues.svg |only tests/testthat/helper-floating-parts.R |only tests/testthat/test-cases.R | 48 + tests/testthat/test-draw-cartoon-sketch.R | 41 + tests/testthat/test-draw-cartoon.R | 231 ++++++ tests/testthat/test-glycan-grob.R | 41 + 32 files changed, 1095 insertions(+), 180 deletions(-)
Title: Beta Regression
Description: Beta regression for modeling beta-distributed dependent variables on the open unit interval (0, 1),
e.g., rates and proportions, see Cribari-Neto and Zeileis (2010) <doi:10.18637/jss.v034.i02>.
Moreover, extended-support beta regression models can accommodate dependent variables with
boundary observations at 0 and/or 1, see Kosmidis and Zeileis (2025) <doi:10.1093/jrsssc/qlaf039>.
For the classical beta regression model, alternative specifications are provided:
Bias-corrected and bias-reduced estimation, finite mixture models, and recursive partitioning for
beta regression, see Grün, Kosmidis, and Zeileis (2012) <doi:10.18637/jss.v048.i11>.
Author: Achim Zeileis [aut, cre] ,
Francisco Cribari-Neto [aut] ,
Bettina Gruen [aut] ,
Ioannis Kosmidis [aut] ,
Alexandre B. Simas [ctb] ,
Andrea V. Rocha [ctb]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between betareg versions 3.2-5 dated 2026-07-12 and 3.2-6 dated 2026-08-26
DESCRIPTION | 14 ++-- MD5 | 32 +++++------ NAMESPACE | 2 NEWS.md | 22 +++++++ R/bamlss.R | 8 +- R/beta01.R | 4 + R/beta4.R | 4 + R/betar.R | 101 ++++++++++++++++++++++++++++-------- R/xbeta.R | 86 ++++++++++++++++++++++++++++++ R/xbetax.R | 3 - README.md | 6 +- man/Beta01.Rd | 6 +- man/Beta4.Rd | 6 +- man/BetaR.Rd | 4 + man/XBeta.Rd | 5 + man/XBetaX.Rd | 5 + tests/Examples/betareg-Ex.Rout.save | 67 +++++++++++------------ 17 files changed, 271 insertions(+), 104 deletions(-)
Title: Reproducible Data Science Environments with 'Nix'
Description: Simplifies the creation of reproducible data science environments
using the 'Nix' package manager, as described in
Dolstra (2006) <ISBN 90-393-4130-3>. The included `rix()`
function generates a complete description of the environment as a
`default.nix` file, which can then be built using 'Nix'. This results in
project specific software environments with pinned versions of R, packages,
linked system dependencies, and other tools or programming languages such
as Python or Julia. Additional helpers make it easy to run R code in
'Nix' software environments for testing and production.
Author: Bruno Rodrigues [aut, cre] ,
Philipp Baumann [aut] ,
David Watkins [rev] for
rOpenSci, see
<https://github.com/ropensci/software-review/issues/625>),
Jacob Wujiciak-Jens [rev] for rOpenSci, see
<https://github.com/ropensci/software-review/issues/62 [...truncated...]
Maintainer: Bruno Rodrigues <bruno@brodrigues.co>
Diff between rix versions 0.18.2 dated 2026-02-18 and 0.18.5 dated 2026-08-26
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Title: Extract Muscle Synergies from Electromyography
Description: Provides a framework to factorise electromyography (EMG) data.
Tools are provided for raw data pre-processing, non negative matrix factorisation,
classification of factorised data and plotting of obtained outcomes.
In particular, reading from ASCII files is supported, along with wide-used
filtering approaches to process EMG data. All steps include one or more sensible
defaults that aim at simplifying the workflow. Yet, all functions are largely
tunable at need. Example data sets are included.
Author: Alessandro Santuz [aut, cre]
Maintainer: Alessandro Santuz <alessandro.santuz@gmail.com>
Diff between musclesyneRgies versions 1.2.5 dated 2022-07-19 and 1.3.1 dated 2026-08-26
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More information about musclesyneRgies at CRAN
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Title: Multiblock Sparse Multivariable Analysis
Description: Several functions can be used to analyze multiblock multivariable data. If the input is a single matrix, then principal components analysis (PCA) is implemented. If the input is a list of matrices, then multiblock PCA is implemented. If the input is two matrices, for exploratory and objective variables, then partial least squares (PLS) analysis is implemented. If the input is two lists of matrices, for exploratory and objective variables, then multiblock PLS analysis is implemented. Additionally, if an extra outcome variable is specified, then a supervised version of the methods above is implemented. For each method, sparse modeling is also incorporated. Functions for selecting the number of components and regularized parameters are also provided.
Author: Atsushi Kawaguchi [aut, cre]
Maintainer: Atsushi Kawaguchi <kawa_a24@yahoo.co.jp>
Diff between msma versions 3.1 dated 2024-02-14 and 3.2 dated 2026-08-26
msma-3.1/msma/inst/doc/msma.R |only msma-3.1/msma/inst/doc/msma.Rmd |only msma-3.1/msma/inst/doc/msma.html |only msma-3.1/msma/vignettes/msma.Rmd |only msma-3.2/msma/DESCRIPTION | 16 msma-3.2/msma/MD5 | 43 + msma-3.2/msma/NAMESPACE | 45 + msma-3.2/msma/NEWS |only msma-3.2/msma/R/src.r | 550 +++++++++++++++++++++-- msma-3.2/msma/build/vignette.rds |binary msma-3.2/msma/inst/doc/msma-ecmsma.R |only msma-3.2/msma/inst/doc/msma-ecmsma.Rmd |only msma-3.2/msma/inst/doc/msma-ecmsma.html |only msma-3.2/msma/inst/doc/msma-introduction.R |only msma-3.2/msma/inst/doc/msma-introduction.Rmd |only msma-3.2/msma/inst/doc/msma-introduction.html |only msma-3.2/msma/inst/doc/msma-model-selection.R |only msma-3.2/msma/inst/doc/msma-model-selection.Rmd |only msma-3.2/msma/inst/doc/msma-model-selection.html |only msma-3.2/msma/inst/doc/msma-multiblock.R |only msma-3.2/msma/inst/doc/msma-multiblock.Rmd |only msma-3.2/msma/inst/doc/msma-multiblock.html |only msma-3.2/msma/man/cvmsma.Rd | 11 msma-3.2/msma/man/msma-internal.Rd | 9 msma-3.2/msma/man/msma-package.Rd | 8 msma-3.2/msma/man/msma.Rd | 15 msma-3.2/msma/man/ncompsearch.Rd | 8 msma-3.2/msma/man/regparasearch.Rd | 8 msma-3.2/msma/tests |only msma-3.2/msma/vignettes/msma-ecmsma.Rmd |only msma-3.2/msma/vignettes/msma-introduction.Rmd |only msma-3.2/msma/vignettes/msma-model-selection.Rmd |only msma-3.2/msma/vignettes/msma-multiblock.Rmd |only 33 files changed, 627 insertions(+), 86 deletions(-)
Title: Wearable Accelerometer Data File Readers
Description: Reads data collected from wearable acceleratometers as used in sleep and physical activity research. Currently supports file formats: binary data from 'GENEActiv' <https://activinsights.com/>, .bin-format from GENEA devices (not for sale), and .cwa-format from 'Axivity' <https://axivity.com>. Further, it has functions for reading text files with epoch level aggregates from 'Actical', 'Fitbit', 'Actiwatch', 'ActiGraph', and 'PhilipsHealthBand'. Primarily designed to complement R package GGIR <https://CRAN.R-project.org/package=GGIR>.
Author: Vincent T van Hees [aut, cre],
Patrick Bos [aut] ,
Lena Kushleyeva [ctb],
Jing Hua Zhao [ctb],
Evgeny Mirkes [ctb],
Dan Jackson [ctb],
Jairo H Migueles [ctb],
John Muschelli [ctb],
Medical Research Council UK [cph, fnd],
Accelting [cph, fnd]
Maintainer: Vincent T van Hees <v.vanhees@accelting.com>
Diff between GGIRread versions 1.0.9 dated 2026-07-15 and 1.0.10 dated 2026-08-26
DESCRIPTION | 10 ++++++---- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/readGENEActiv.R | 31 +++++++++++++++++-------------- man/GGIRread-package.Rd | 4 ++-- src/GENEActivReader.cpp | 2 +- 6 files changed, 36 insertions(+), 26 deletions(-)
Title: Diagnostic Test Accuracy Meta-Analysis using Template Model
Builder
Description: Fits the hierarchical summary receiver operating characteristic (HSROC) model of
Rutter and Gatsonis (2001) <doi:10.1002/sim.942>, the bivariate binomial-normal model of
Reitsma et al. (2005) <doi:10.1016/j.jclinepi.2005.02.022>, the threshold-based bivariate
time-to-event model of Hoyer et al. (2018) <doi:10.1002/jrsm.1273>, and the latent class
extensions of Liu et al. (2015) <doi:10.1111/biom.12264> for diagnostic studies with an
imperfect reference standard. Provides subgroup analyses, HSROC meta-regression,
likelihood-ratio tests, summary ROC plots, and coupled forest plots.
Author: Claus Nowak [aut, cre]
Maintainer: Claus Nowak <claus.nowak@donau-uni.ac.at>
Diff between dtametaTMB versions 0.1.1 dated 2026-07-26 and 0.1.2 dated 2026-08-26
dtametaTMB-0.1.1/dtametaTMB/R/forestCochrane.R |only dtametaTMB-0.1.1/dtametaTMB/R/forestCochraneLCA.R |only dtametaTMB-0.1.1/dtametaTMB/R/forestCochraneSubgroup.R |only dtametaTMB-0.1.1/dtametaTMB/R/forestCochraneSubgroupLCA.R |only dtametaTMB-0.1.1/dtametaTMB/man/forest.Cochrane.Rd |only dtametaTMB-0.1.1/dtametaTMB/man/forest.CochraneLCA.Rd |only dtametaTMB-0.1.1/dtametaTMB/man/forest.CochraneSubgroup.Rd |only dtametaTMB-0.1.1/dtametaTMB/man/forest.CochraneSubgroupLCA.Rd |only dtametaTMB-0.1.2/dtametaTMB/DESCRIPTION | 12 dtametaTMB-0.1.2/dtametaTMB/MD5 | 73 +++-- dtametaTMB-0.1.2/dtametaTMB/NAMESPACE | 135 ++++++---- dtametaTMB-0.1.2/dtametaTMB/R/coefvcov.R |only dtametaTMB-0.1.2/dtametaTMB/R/fitHoyerAFT.R | 2 dtametaTMB-0.1.2/dtametaTMB/R/fitReitsma.R | 2 dtametaTMB-0.1.2/dtametaTMB/R/fitReitsmaLCA.R | 2 dtametaTMB-0.1.2/dtametaTMB/R/fitReitsmaSubgroup.R | 2 dtametaTMB-0.1.2/dtametaTMB/R/fitReitsmaSubgroupLCA.R | 2 dtametaTMB-0.1.2/dtametaTMB/R/fitRutterGatsonis.R | 2 dtametaTMB-0.1.2/dtametaTMB/R/fitRutterGatsonisLCA.R | 2 dtametaTMB-0.1.2/dtametaTMB/R/fitRutterGatsonisSubgroup.R | 2 dtametaTMB-0.1.2/dtametaTMB/R/fitRutterGatsonisSubgroupLCA.R | 2 dtametaTMB-0.1.2/dtametaTMB/R/forest.R | 4 dtametaTMB-0.1.2/dtametaTMB/R/forestHoyerAFT.R |only dtametaTMB-0.1.2/dtametaTMB/R/forestReitsma.R |only dtametaTMB-0.1.2/dtametaTMB/R/forestReitsmaLCA.R |only dtametaTMB-0.1.2/dtametaTMB/R/forestReitsmaSubgroup.R |only dtametaTMB-0.1.2/dtametaTMB/R/forestReitsmaSubgroupLCA.R |only dtametaTMB-0.1.2/dtametaTMB/R/forestRutterGatsonis.R |only dtametaTMB-0.1.2/dtametaTMB/R/forestRutterGatsonisLCA.R |only dtametaTMB-0.1.2/dtametaTMB/R/forestRutterGatsonisSubgroup.R |only dtametaTMB-0.1.2/dtametaTMB/R/forestRutterGatsonisSubgroupLCA.R |only dtametaTMB-0.1.2/dtametaTMB/R/tub.R | 4 dtametaTMB-0.1.2/dtametaTMB/README.md | 2 dtametaTMB-0.1.2/dtametaTMB/build/partial.rdb |binary dtametaTMB-0.1.2/dtametaTMB/build/vignette.rds |binary dtametaTMB-0.1.2/dtametaTMB/inst/doc/LCA.qmd | 2 dtametaTMB-0.1.2/dtametaTMB/man/coef.dtametaTMB.Rd |only dtametaTMB-0.1.2/dtametaTMB/man/forest.HoyerAFT.Rd |only dtametaTMB-0.1.2/dtametaTMB/man/forest.Rd | 3 dtametaTMB-0.1.2/dtametaTMB/man/forest.Reitsma.Rd |only dtametaTMB-0.1.2/dtametaTMB/man/forest.ReitsmaLCA.Rd |only dtametaTMB-0.1.2/dtametaTMB/man/forest.ReitsmaSubgroup.Rd |only dtametaTMB-0.1.2/dtametaTMB/man/forest.ReitsmaSubgroupLCA.Rd |only dtametaTMB-0.1.2/dtametaTMB/man/forest.RutterGatsonis.Rd |only dtametaTMB-0.1.2/dtametaTMB/man/forest.RutterGatsonisLCA.Rd |only dtametaTMB-0.1.2/dtametaTMB/man/forest.RutterGatsonisSubgroup.Rd |only dtametaTMB-0.1.2/dtametaTMB/man/forest.RutterGatsonisSubgroupLCA.Rd |only dtametaTMB-0.1.2/dtametaTMB/man/tub.Rd | 4 dtametaTMB-0.1.2/dtametaTMB/man/vcov.dtametaTMB.Rd |only dtametaTMB-0.1.2/dtametaTMB/tests/testthat/test-fitLCA.R | 8 dtametaTMB-0.1.2/dtametaTMB/vignettes/LCA.html | 2 dtametaTMB-0.1.2/dtametaTMB/vignettes/LCA.qmd | 2 52 files changed, 163 insertions(+), 106 deletions(-)
Title: Retrieval and Processing of the Spanish National Forest
Inventory
Description: Fetches, harmonizes, and analyses data from the Spanish National
Forest Inventory for reproducible, design-aware forest inventory workflows.
Computes tree- and stand-level metrics, applies sampling-based expansion
factors, estimates volume, and supports extensible processing for external
inventory designs with custom sampling schemes and volume equations. Spatial
extensions can attach plot geometries, preserve geometry sidecars through
metric workflows, and return georeferenced sf outputs for mapping and
remote-sensing integration.
Author: Wilson Lara [aut, cre] ,
Cristobal Ordonez [aut] ,
Aitor Vazquez-Veloso [aut] ,
Felipe Bravo [aut]
Maintainer: Wilson Lara <wilarhen@gmail.com>
Diff between basifoR versions 0.7.8 dated 2026-07-02 and 0.7.9 dated 2026-08-26
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 9 +++++++++ man/inventoryMetrics.Rd | 11 ++++++----- 4 files changed, 21 insertions(+), 11 deletions(-)
Title: Structural Scenario Analysis for Bayesian Structural Vector
Autoregression Models
Description: Implements the scenario analysis proposed by Antolin-Diaz,
Petrella and Rubio-Ramirez (2021)
"Structural scenario analysis with SVARs" <doi:10.1016/j.jmoneco.2020.06.001>.
Author: Giovanni Lombardo [aut, cre],
Tito Quadri [aut]
Maintainer: Giovanni Lombardo <giannilmbd@gmail.com>
Diff between APRScenario versions 0.0.4.0 dated 2026-07-15 and 0.0.4.2 dated 2026-08-26
DESCRIPTION | 6 MD5 | 14 - NEWS.md | 30 ++ README.md | 17 - inst/doc/APRScenario.R | 13 - inst/doc/APRScenario.Rmd | 14 - inst/doc/APRScenario.html | 470 ++++++++++++++++++++++------------------------ vignettes/APRScenario.Rmd | 14 - 8 files changed, 284 insertions(+), 294 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-07-02 0.3.2
2025-04-20 0.3.1
2025-03-08 0.2.1
2023-10-19 0.1.1
2023-09-05 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-10 1.0.3
2026-01-21 1.0.2
2025-03-20 1.0.1
2025-02-06 1.0.0
2023-08-23 0.0.3
2023-07-17 0.0.2
2023-05-29 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-25 0.0.8
2024-02-13 0.0.7
2023-12-19 0.0.6
2022-06-06 0.0.5
2022-05-11 0.0.4
2021-10-30 0.0.3
2021-07-28 0.0.2
2021-06-23 0.0.1
Title: A Legacy Package
Description: The author has retired from academic research. Accordingly, this package should not be considered a validated tool for use in peer-reviewed publications or as the basis for grant applications. Backward compatibility with user-code published in <doi:10.1186/s12859-023-05408-8> and <doi:10.1016/j.labinv.2023.100158> is not maintained in versions >= 0.4.0 (June 2026) of this package. The authors of those publications are the appropriate contacts for reproducibility inquiries.
Author: Tingting Zhan [aut, cre]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between Qindex versions 0.2.0 dated 2026-07-17 and 0.2.1 dated 2026-08-26
DESCRIPTION | 21 ++++++++------------- MD5 | 6 +++--- NAMESPACE | 12 +++++++----- man/Qindex-package.Rd | 6 +++--- 4 files changed, 21 insertions(+), 24 deletions(-)