Title: Double Machine Learning for Static Panel Models with Fixed
Effects
Description: The 'xtdml' package implements partially linear panel regression (PLPR) models with high-dimensional confounding variables and an exogenous treatment variable within the double machine learning framework. The package is used to estimate the structural parameter (treatment effect) in static panel data models with fixed effects using the approaches established in Clarke and Polselli (2025) <doi:10.1093/ectj/utaf011>. 'xtdml' follows the object-oriented architecture of 'DoubleML' (Bach et al., 2024) <doi:10.18637/jss.v108.i03> and uses the 'mlr3' ecosystem.
Author: Annalivia Polselli [aut, cre]
Maintainer: Annalivia Polselli <apolselli.econ@gmail.com>
Diff between xtdml versions 0.1.12 dated 2026-03-13 and 0.1.13 dated 2026-09-01
DESCRIPTION | 20 MD5 | 32 NAMESPACE | 97 - R/dataset.R | 247 ++- R/helper.R | 68 + R/xtdml_data.R | 97 + R/xtdml_main.R | 3260 +++++++++++++++++++++++++------------------------- R/xtdml_plr.R | 28 R/zzz.R | 6 README.md | 26 man/make_plpr_data.Rd | 143 +- man/xtdml.Rd | 550 ++++---- man/xtdml_data.Rd | 193 +- man/xtdml_plr.Rd | 226 +-- tests |only 15 files changed, 2673 insertions(+), 2320 deletions(-)
Title: Fast Enrichment Analysis via Circular Permutations
Description: Fast enrichment analysis for locally correlated statistics
via circular permutations.
The analysis can be performed at multiple significance thresholds
for both primary and auxiliary data sets with
efficient correction for multiple testing.
Author: Andrey A Shabalin [aut, cre] ,
Edwin J C G van den Oord [aut]
Maintainer: Andrey A Shabalin <andrey.shabalin@gmail.com>
Diff between shiftR versions 1.5 dated 2019-03-22 and 1.6 dated 2026-09-01
DESCRIPTION | 11 MD5 | 14 R/binary.R | 8 build/vignette.rds |binary inst/doc/intro.R | 12 inst/doc/intro.html | 742 +++++++++++++++++++++++++++++++-------------------- man/shiftrPrepare.Rd | 2 src/c_code.c | 16 - 8 files changed, 494 insertions(+), 311 deletions(-)
Title: Rapid Asynchronous and Distributed Computing
Description: Package to tackle large-scale problems asynchronously across
a distributed network. Employing a database centric model, rush
enables workers to communicate tasks and their results over a shared
'Redis' database. Key features include low task overhead, efficient
caching, and robust error handling. The package powers the
asynchronous optimization algorithms in the 'bbotk' and 'mlr3tuning'
packages.
Author: Marc Becker [cre, aut, cph]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between rush versions 1.2.1 dated 2026-07-24 and 1.3.0 dated 2026-09-01
DESCRIPTION | 8 - MD5 | 38 ++--- NAMESPACE | 1 NEWS.md | 5 R/Rush.R | 248 +++++++++++++++++++++++++++++-------- R/RushWorker.R | 69 ++++++++-- R/assertions.R | 21 +++ R/rush_plan.R | 12 + R/start_worker.R | 16 ++ inst/testthat/helper.R | 21 +++ man/Rush.Rd | 68 +++++++++- man/RushWorker.Rd | 19 ++ man/rush_assertions.Rd | 8 + man/rush_plan.Rd | 11 + man/start_worker.Rd | 8 + tests/testthat/helper.R | 19 ++ tests/testthat/test-Rush.R | 173 +++++++++++++++++++++++++ tests/testthat/test-RushWorker.R | 57 ++++++++ tests/testthat/test-rush_plan.R | 31 ++++ tests/testthat/test-start_worker.R | 13 + 20 files changed, 753 insertions(+), 93 deletions(-)
Title: Compact Inline Widgets for 'shiny' Apps
Description: Provides a basic set of compact widgets for 'shiny' apps which
occupy less space and can appear inline with surrounding text.
Author: Nick Davies [aut, cre]
Maintainer: Nick Davies <nicholas.davies@lshtm.ac.uk>
Diff between inshiny versions 0.1.4 dated 2026-03-31 and 0.1.5 dated 2026-09-01
DESCRIPTION | 11 MD5 | 59 +- NEWS.md | 25 + R/check.R | 4 R/helper.R | 28 + R/number.R | 4 R/select.R | 36 + R/text.R | 9 R/update.R | 34 + README.md | 3 build/vignette.rds |binary inst/doc/inshiny.Rmd | 16 inst/doc/inshiny.html | 25 - inst/www/inshiny/inshiny.css | 18 inst/www/inshiny/inshiny.js | 974 ++++++++++++++++++++++------------------ man/inline.Rd | 6 man/inline_link.Rd | 4 man/inline_switch.Rd | 2 man/inshiny-package.Rd | 5 tests/testthat/_snaps/check.md | 4 tests/testthat/_snaps/number.md | 4 tests/testthat/_snaps/select.md | 8 tests/testthat/_snaps/update.md | 83 ++- tests/testthat/apps |only tests/testthat/helper.R | 3 tests/testthat/test-dynamic.R |only tests/testthat/test-helper.R | 11 tests/testthat/test-text.R | 8 tests/testthat/test-update.R | 19 vignettes/images/vignette_3.jpg |only vignettes/inshiny.Rmd | 16 31 files changed, 896 insertions(+), 523 deletions(-)
Title: LUCID with Multiple Omics Data
Description: Implements Latent Unknown Clusters By Integrating Multi-omics Data
(LUCID; Peng (2019) <doi:10.1093/bioinformatics/btz667>) for integrative
clustering with exposures, multi-omics data, and health outcomes.
Supports three integration strategies: early, parallel, and serial.
Provides model fitting and tuning, lasso-type regularization for exposure
and omics feature selection, handling of missing data, including both
sporadic and complete-case patterns, prediction, and g-computation for
estimating causal effects of exposures, bootstrap inference for
uncertainty estimation, and S3 summary and plot methods. For the
multi-omics integration framework, see Jia (2024)
<https://journal.r-project.org/articles/RJ-2024-012/RJ-2024-012.pdf>.
For the missing-data imputation mechanism, see Jia (2024)
<doi:10.1093/bioadv/vbae123>.
Author: Qiran Jia [aut, cre] ,
Yinqi Zhao [aut] ,
David Conti [ths] ,
Jesse Goodrich [ctb]
Maintainer: Qiran Jia <qiranjia@usc.edu>
Diff between LUCIDus versions 3.1.0 dated 2026-03-11 and 3.2.0 dated 2026-09-01
LUCIDus-3.1.0/LUCIDus/R/00_stability_preload.R |only LUCIDus-3.1.0/LUCIDus/R/EM_all.R |only LUCIDus-3.1.0/LUCIDus/R/early_estep.R |only LUCIDus-3.1.0/LUCIDus/R/early_mstep.R |only LUCIDus-3.1.0/LUCIDus/R/em.R |only LUCIDus-3.1.0/LUCIDus/R/missing.R |only LUCIDus-3.1.0/LUCIDus/R/missing_utils.R |only LUCIDus-3.1.0/LUCIDus/R/pred_lucid.R |only LUCIDus-3.1.0/LUCIDus/R/predict_lucid_all.R |only LUCIDus-3.1.0/LUCIDus/R/summary_auxi_fxn_serial.R |only LUCIDus-3.1.0/LUCIDus/R/utility.R |only LUCIDus-3.1.0/LUCIDus/R/utils.R |only LUCIDus-3.1.0/LUCIDus/inst/tutorials |only LUCIDus-3.1.0/LUCIDus/man/Istep_Z.Rd |only LUCIDus-3.1.0/LUCIDus/man/check_and_stabilize_sigma.Rd |only LUCIDus-3.1.0/LUCIDus/man/check_convergence.Rd |only LUCIDus-3.1.0/LUCIDus/man/fill_data.Rd |only LUCIDus-3.1.0/LUCIDus/man/gen_ci.Rd |only LUCIDus-3.1.0/LUCIDus/man/plot.Rd |only LUCIDus-3.1.0/LUCIDus/man/safe_log_sum_exp.Rd |only LUCIDus-3.1.0/LUCIDus/man/safe_normalize.Rd |only LUCIDus-3.1.0/LUCIDus/man/safe_solve.Rd |only LUCIDus-3.1.0/LUCIDus/man/summarize_missing_stats.Rd |only LUCIDus-3.2.0/LUCIDus/DESCRIPTION | 11 LUCIDus-3.2.0/LUCIDus/MD5 | 250 +- LUCIDus-3.2.0/LUCIDus/NAMESPACE | 17 LUCIDus-3.2.0/LUCIDus/NEWS.md |only LUCIDus-3.2.0/LUCIDus/R/boot_lucid.R | 493 ++++ LUCIDus-3.2.0/LUCIDus/R/data.R | 75 LUCIDus-3.2.0/LUCIDus/R/density_helpers.R |only LUCIDus-3.2.0/LUCIDus/R/early_integration_em.R |only LUCIDus-3.2.0/LUCIDus/R/early_integration_family.R |only LUCIDus-3.2.0/LUCIDus/R/em_utils.R |only LUCIDus-3.2.0/LUCIDus/R/estimate_lucid.R |only LUCIDus-3.2.0/LUCIDus/R/g_computation_utility.R | 114 - LUCIDus-3.2.0/LUCIDus/R/input_validation.R |only LUCIDus-3.2.0/LUCIDus/R/lucid.R | 84 LUCIDus-3.2.0/LUCIDus/R/missing_data_diagnostics.R |only LUCIDus-3.2.0/LUCIDus/R/missing_data_em.R |only LUCIDus-3.2.0/LUCIDus/R/model_extractors.R |only LUCIDus-3.2.0/LUCIDus/R/outcome_utils.R |only LUCIDus-3.2.0/LUCIDus/R/parallel_estep.R | 394 --- LUCIDus-3.2.0/LUCIDus/R/parallel_mstep.R | 547 +---- LUCIDus-3.2.0/LUCIDus/R/plot_cluster_omic_profile.R |only LUCIDus-3.2.0/LUCIDus/R/plot_lucid.R | 210 -- LUCIDus-3.2.0/LUCIDus/R/predict_lucid.R |only LUCIDus-3.2.0/LUCIDus/R/stability_utils.R | 288 ++ LUCIDus-3.2.0/LUCIDus/R/summary.R | 1024 +++------- LUCIDus-3.2.0/LUCIDus/R/tune_lucid.R | 176 + LUCIDus-3.2.0/LUCIDus/build |only LUCIDus-3.2.0/LUCIDus/inst/doc |only LUCIDus-3.2.0/LUCIDus/man/analyze_missing_pattern.Rd | 40 LUCIDus-3.2.0/LUCIDus/man/boot_lucid.Rd | 43 LUCIDus-3.2.0/LUCIDus/man/check_imputation_quality.Rd | 55 LUCIDus-3.2.0/LUCIDus/man/check_na.Rd | 57 LUCIDus-3.2.0/LUCIDus/man/estimate_lucid.Rd | 175 + LUCIDus-3.2.0/LUCIDus/man/figures |only LUCIDus-3.2.0/LUCIDus/man/get_cluster_assignment.Rd |only LUCIDus-3.2.0/LUCIDus/man/get_selected_G.Rd |only LUCIDus-3.2.0/LUCIDus/man/get_selected_Z.Rd |only LUCIDus-3.2.0/LUCIDus/man/get_top_omics_features.Rd |only LUCIDus-3.2.0/LUCIDus/man/lucid.Rd | 38 LUCIDus-3.2.0/LUCIDus/man/plot.early_lucid.Rd |only LUCIDus-3.2.0/LUCIDus/man/plot.lucid_parallel.Rd |only LUCIDus-3.2.0/LUCIDus/man/plot.lucid_serial.Rd |only LUCIDus-3.2.0/LUCIDus/man/plot_cluster_omic_profile.Rd |only LUCIDus-3.2.0/LUCIDus/man/predict_lucid.Rd | 79 LUCIDus-3.2.0/LUCIDus/man/print.sumlucid_early.Rd | 12 LUCIDus-3.2.0/LUCIDus/man/print.sumlucid_parallel.Rd | 11 LUCIDus-3.2.0/LUCIDus/man/print.sumlucid_serial.Rd | 7 LUCIDus-3.2.0/LUCIDus/man/safe_impute.Rd | 47 LUCIDus-3.2.0/LUCIDus/man/sim_data.Rd | 33 LUCIDus-3.2.0/LUCIDus/man/simulated_HELIX_data.Rd | 32 LUCIDus-3.2.0/LUCIDus/man/summary.lucid_parallel.Rd | 10 LUCIDus-3.2.0/LUCIDus/man/summary.lucid_serial.Rd | 28 LUCIDus-3.2.0/LUCIDus/man/summary_lucid.Rd | 67 LUCIDus-3.2.0/LUCIDus/man/tune_lucid.Rd | 30 LUCIDus-3.2.0/LUCIDus/tests/testthat.R | 4 LUCIDus-3.2.0/LUCIDus/tests/testthat/helper-oracle.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/helper-sim.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-Serial-binary-missing.R | 7 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-Serial-binary-summary.R | 3 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-Serial-normal-missing.R | 9 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-accuracy-ci-coverage.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-accuracy-imputation.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-accuracy-recovery.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-accuracy-selection.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-boot-lucid-early.R | 2 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-boot-lucid-parallel.R | 8 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-boot-lucid-qc.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-boot-lucid-serial.R | 2 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-check-K-validation.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-convergence-monotonicity.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-defect-init-model-null.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-defect-regressions.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-early-robustness.R | 4 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-g_comp-binary-3-layers.R | 6 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-gcomp-binary-1-layer.R | 3 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-gcomp-early-parallel-contract.R | 9 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-gcomp-serial-normal-5-layers.R | 3 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-grid-fit-sanity.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-grid-missingness-invariants.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-grid-predict-modes.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-invalid-input.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-label-switching.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-lucid-binary-1-layer.R | 6 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-lucid-binary-3-layers.R | 6 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-lucid-binary-5-layers.R | 8 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-lucid-model-default.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-lucid-normal-1-layer.R | 6 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-lucid-normal-3-layers.R | 7 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-lucid-normal-5-layers.R | 33 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-missing-binary-1-layer.R | 8 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-missing-binary-5-layers.R | 9 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-missing-data-mechanism.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-missing-normal-1-layers.R | 8 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-missing-normal-3-layers.R | 38 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-model-extractors.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-outcome-integration-regressions.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-outcome-parameterization.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-paper-equations-oracle.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-paper-likelihood-bic.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-paper-missing-equation17.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-paper-outcome-mstep.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-paper-parallel-arbitrary-layers.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-paper-simulation-recovery.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-parallel-p0-regressions.R | 21 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-parallel-robustness-extra.R | 11 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-parallel-selection-impute.R | 3 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-plot-cluster-omic-profile.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-plot-profile-generalizability.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-plot_lucid_1_layer.R | 15 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-predict-argument-modes.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-predict-binary-1-layer.R | 3 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-predict-binary-3-layers.R | 6 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-predict-binary-5-layers.R | 3 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-predict-normal-5-layers.R | 8 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-predict-serial-binary-5-layers.R | 3 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-predict-serial-normal-5-layers.R | 3 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-predict_normal_1_layer.R | 3 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-serial-6stage-parallel-smoke.R | 3 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-serial-em-control.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-serial-fit-missing-robustness.R | 3 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-serial-reproducibility.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-serial-select-and-likelihood.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-serial-summary-shape.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-summart-binary-5-layers.R | 3 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-summary-missing-profile.R | 1 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-summary-normal-5-layers.R | 3 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-summary-output-correctness.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-summary-significance-stars.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-tune-Serial-binary.R | 2 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-tune-Serial-normal.R | 2 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-tune-binary-2-layers.R | 2 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-tune-lucid-serial-robustness.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-tune-normal-2-layers.R | 2 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-tune-penalty-fail-guard.R | 2 LUCIDus-3.2.0/LUCIDus/tests/testthat/test-tuning-verbose.R |only LUCIDus-3.2.0/LUCIDus/tests/testthat/test-verbose-fit-logging.R | 64 LUCIDus-3.2.0/LUCIDus/vignettes |only 160 files changed, 2634 insertions(+), 2168 deletions(-)
Title: Recursive Partitioning for Graded Response Models
Description: Provides methods for recursive partitioning based on the
'Graded Response Model' ('GRM'), extending the 'MOB' algorithm from the
'partykit' package. The package allows for fitting
'GRM' trees that partition the population into homogeneous
subgroups based on item response patterns and covariates.
Includes specialized plotting functions for visualizing 'GRM' trees
with different terminal node displays (threshold regions,
parameter profiles, and factor score distributions). The package also implements the Longitudinal GRMTree for detecting response shift in PROMs measured at two time points, embedding a constrained two-factor longitudinal GRM within recursive partitioning, with post-hoc characterization of recalibration and reprioritization. Random-forest ensembles (`grmforest()`) with permutation variable importance are available for both the cross-sectional and longitudinal trees.
For more details on the methods, see Samejima (1969) <doi:10.1002/J.2333-8504.1968.TB00153.X>, Komboz [...truncated...]
Author: Olayinka I. Arimoro [aut, cre] ,
Tolulope T. Sajobi [aut],
Lisa M. Lix [aut],
Matthew T. James [ctb],
Maria Santana [ctb],
Emmanuel Ugochukwu [ctb]
Maintainer: Olayinka I. Arimoro <olayinka.arimoro@ucalgary.ca>
Diff between grmtree versions 0.2.2 dated 2026-08-22 and 0.3.0 dated 2026-09-01
DESCRIPTION | 13 ++- MD5 | 42 ++++++------ NAMESPACE | 1 NEWS.md | 20 +++++- R/grmforest-varimp-final.R | 17 ++++- R/grmforest.R | 108 +++++++++++++++++++++++++++++---- R/longitudinal_grmtree.R | 57 +++++++++-------- README.md | 22 ++++++ inst/doc/GRMForest-implementation.R | 2 inst/doc/GRMForest-implementation.Rmd | 6 - inst/doc/GRMForest-implementation.html | 8 +- inst/doc/longitudinal-grmtree.R | 37 +++++++++++ inst/doc/longitudinal-grmtree.Rmd | 80 +++++++++++++++++++++++- inst/doc/longitudinal-grmtree.html | 85 +++++++++++++++++++++++-- man/grmforest.Rd | 41 +++++++++++- man/longitudinal_grmfit.Rd | 26 ++++--- man/longitudinal_grmtree.Rd | 3 man/varimp.Rd | 15 ++++ tests/testthat/test-grmforest.R | 24 +++++++ tests/testthat/test-varimp.R | 24 +++++++ vignettes/GRMForest-implementation.Rmd | 6 - vignettes/longitudinal-grmtree.Rmd | 80 +++++++++++++++++++++++- 22 files changed, 608 insertions(+), 109 deletions(-)
Title: Efficient Rolling Functions
Description: Fast rolling-window functions for numeric vectors.
Designed for efficient processing of environmental time-series data.
Author: Jonathan Callahan [aut, cre],
Hans Martin [aut]
Maintainer: Jonathan Callahan <jonathan.s.callahan@gmail.com>
Diff between MazamaRollUtils versions 1.0.0 dated 2026-03-17 and 1.1.0 dated 2026-09-01
MazamaRollUtils-1.0.0/MazamaRollUtils/tests/testthat/test-roll_mean-weights.R.R |only MazamaRollUtils-1.1.0/MazamaRollUtils/DESCRIPTION | 6 MazamaRollUtils-1.1.0/MazamaRollUtils/MD5 | 58 +- MazamaRollUtils-1.1.0/MazamaRollUtils/NAMESPACE | 14 MazamaRollUtils-1.1.0/MazamaRollUtils/NEWS.md | 16 MazamaRollUtils-1.1.0/MazamaRollUtils/R/MazamaRollUtils-package.R |only MazamaRollUtils-1.1.0/MazamaRollUtils/R/MazamaRollUtils.R | 217 +++++++++- MazamaRollUtils-1.1.0/MazamaRollUtils/R/findOutliers.R | 7 MazamaRollUtils-1.1.0/MazamaRollUtils/README.md | 126 +++-- MazamaRollUtils-1.1.0/MazamaRollUtils/inst/doc/MazamaRollUtils.Rmd | 19 MazamaRollUtils-1.1.0/MazamaRollUtils/inst/doc/MazamaRollUtils.html | 27 - MazamaRollUtils-1.1.0/MazamaRollUtils/man/MazamaRollUtils-package.Rd | 32 + MazamaRollUtils-1.1.0/MazamaRollUtils/man/findOutliers.Rd | 5 MazamaRollUtils-1.1.0/MazamaRollUtils/man/roll_MAD.Rd | 16 MazamaRollUtils-1.1.0/MazamaRollUtils/man/roll_hampel.Rd | 17 MazamaRollUtils-1.1.0/MazamaRollUtils/man/roll_max.Rd | 10 MazamaRollUtils-1.1.0/MazamaRollUtils/man/roll_mean.Rd | 10 MazamaRollUtils-1.1.0/MazamaRollUtils/man/roll_median.Rd | 10 MazamaRollUtils-1.1.0/MazamaRollUtils/man/roll_min.Rd | 10 MazamaRollUtils-1.1.0/MazamaRollUtils/man/roll_nowcast.Rd | 5 MazamaRollUtils-1.1.0/MazamaRollUtils/man/roll_prod.Rd | 10 MazamaRollUtils-1.1.0/MazamaRollUtils/man/roll_sd.Rd | 1 MazamaRollUtils-1.1.0/MazamaRollUtils/man/roll_sum.Rd | 10 MazamaRollUtils-1.1.0/MazamaRollUtils/man/roll_var.Rd | 1 MazamaRollUtils-1.1.0/MazamaRollUtils/src/MazamaRollUtils.cpp | 9 MazamaRollUtils-1.1.0/MazamaRollUtils/src/roll_nowcast.cpp | 7 MazamaRollUtils-1.1.0/MazamaRollUtils/tests/testthat/test-common-na-rm.R | 24 - MazamaRollUtils-1.1.0/MazamaRollUtils/tests/testthat/test-compat-zoo.R | 24 + MazamaRollUtils-1.1.0/MazamaRollUtils/tests/testthat/test-min-valid.R |only MazamaRollUtils-1.1.0/MazamaRollUtils/tests/testthat/test-roll_mean-weights.R |only MazamaRollUtils-1.1.0/MazamaRollUtils/tests/testthat/test-roll_nowcast.R | 15 MazamaRollUtils-1.1.0/MazamaRollUtils/vignettes/MazamaRollUtils.Rmd | 19 32 files changed, 552 insertions(+), 173 deletions(-)
More information about MazamaRollUtils at CRAN
Permanent link
Title: Basic Functions in Knowledge Space Theory Using Matrix
Representation
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework, which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstMatrix' package
provides basic functionalities to generate, handle, and manipulate
knowledge structures and knowledge spaces. Opposed to the 'kst'
package, 'kstMatrix' uses matrix representations for knowledge
structures. Furthermore, 'kstMatrix' contains several knowledge spaces
obtained in the 1990s by the research group around Cornelia Dowling
through querying experts.
Author: Cord Hockemeyer [aut, cre],
Peter Steiner [aut],
Wai Wong [aut]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstMatrix versions 2.3-4 dated 2026-07-15 and 3.0-0 dated 2026-09-01
kstMatrix-2.3-4/kstMatrix/R/kmSF2basis.R |only kstMatrix-2.3-4/kstMatrix/R/kmSR2basis.R |only kstMatrix-2.3-4/kstMatrix/R/kmunionclosure.kmdata.R |only kstMatrix-2.3-4/kstMatrix/R/kmunionclosure.kmfamset.R |only kstMatrix-2.3-4/kstMatrix/R/kmunionclosure.kmstructure.R |only kstMatrix-2.3-4/kstMatrix/man/kmnneighbourhood.Rd |only kstMatrix-2.3-4/kstMatrix/vignettes/kstMatrixClasses.png |only kstMatrix-3.0-0/kstMatrix/Changelog | 20 kstMatrix-3.0-0/kstMatrix/DESCRIPTION | 18 kstMatrix-3.0-0/kstMatrix/MD5 | 250 +- kstMatrix-3.0-0/kstMatrix/NAMESPACE | 86 kstMatrix-3.0-0/kstMatrix/R/Deprecated.R |only kstMatrix-3.0-0/kstMatrix/R/binarymatrixproduct.R |only kstMatrix-3.0-0/kstMatrix/R/cad.R | 61 kstMatrix-3.0-0/kstMatrix/R/fractions.R | 53 kstMatrix-3.0-0/kstMatrix/R/kmassess.R | 2 kstMatrix-3.0-0/kstMatrix/R/kmassessbayesian.R | 2 kstMatrix-3.0-0/kstMatrix/R/kmassesshalfsplit.R | 2 kstMatrix-3.0-0/kstMatrix/R/kmassessinformative.R | 4 kstMatrix-3.0-0/kstMatrix/R/kmassessmultiplicative.R | 2 kstMatrix-3.0-0/kstMatrix/R/kmassesssimulation.R | 2 kstMatrix-3.0-0/kstMatrix/R/kmbasis.R | 14 kstMatrix-3.0-0/kstMatrix/R/kmbasis.kmsurmisefunction.R | 10 kstMatrix-3.0-0/kstMatrix/R/kmbasis.kmsurmiserelation.R | 5 kstMatrix-3.0-0/kstMatrix/R/kmbasis.matrix.R | 4 kstMatrix-3.0-0/kstMatrix/R/kmbasisfringe.R | 2 kstMatrix-3.0-0/kstMatrix/R/kmbasisneighbourhood.R | 2 kstMatrix-3.0-0/kstMatrix/R/kmclosure.R |only kstMatrix-3.0-0/kstMatrix/R/kmclosure.kmattributionfunction.R |only kstMatrix-3.0-0/kstMatrix/R/kmclosure.kmattributionrelation.R |only kstMatrix-3.0-0/kstMatrix/R/kmclosure.kmdata.R |only kstMatrix-3.0-0/kstMatrix/R/kmclosure.kmfamset.R |only kstMatrix-3.0-0/kstMatrix/R/kmcolors.R | 3 kstMatrix-3.0-0/kstMatrix/R/kmdist.R | 2 kstMatrix-3.0-0/kstMatrix/R/kmdoubleequal.R | 1 kstMatrix-3.0-0/kstMatrix/R/kmeqreduction.R | 21 kstMatrix-3.0-0/kstMatrix/R/kmexpand.R |only kstMatrix-3.0-0/kstMatrix/R/kmfringe.R | 2 kstMatrix-3.0-0/kstMatrix/R/kmgenerate.R | 2 kstMatrix-3.0-0/kstMatrix/R/kmgradations.R | 2 kstMatrix-3.0-0/kstMatrix/R/kmheights.R |only kstMatrix-3.0-0/kstMatrix/R/kmiita2SR.R | 66 kstMatrix-3.0-0/kstMatrix/R/kmintersection.R |only kstMatrix-3.0-0/kstMatrix/R/kmintersection.kmqspace.R |only kstMatrix-3.0-0/kstMatrix/R/kmintersection.kmspace.R |only kstMatrix-3.0-0/kstMatrix/R/kmintersection.kmsurmisefunction.R |only kstMatrix-3.0-0/kstMatrix/R/kmintersection.kmsurmiserelation.R |only kstMatrix-3.0-0/kstMatrix/R/kmintersectionclosure.R |only kstMatrix-3.0-0/kstMatrix/R/kmiswellgraded.R | 41 kstMatrix-3.0-0/kstMatrix/R/kmlearningpathmatrices.R |only kstMatrix-3.0-0/kstMatrix/R/kmlearningpaths.R | 74 kstMatrix-3.0-0/kstMatrix/R/kmmesh.R |only kstMatrix-3.0-0/kstMatrix/R/kmneighbourhood.R | 5 kstMatrix-3.0-0/kstMatrix/R/kmnotions.R | 1 kstMatrix-3.0-0/kstMatrix/R/kmprettyprint.R |only kstMatrix-3.0-0/kstMatrix/R/kmqspace.R |only kstMatrix-3.0-0/kstMatrix/R/kmqspace.kmfamset.R |only kstMatrix-3.0-0/kstMatrix/R/kmqspace.kmsurmisefunction.R |only kstMatrix-3.0-0/kstMatrix/R/kmqspace.kmsurmiserelation.R |only kstMatrix-3.0-0/kstMatrix/R/kmrefine.R |only kstMatrix-3.0-0/kstMatrix/R/kmsassess.R | 2 kstMatrix-3.0-0/kstMatrix/R/kmsimulate.R | 2 kstMatrix-3.0-0/kstMatrix/R/kmspace.R | 15 kstMatrix-3.0-0/kstMatrix/R/kmspace.kmdata.R |only kstMatrix-3.0-0/kstMatrix/R/kmspace.kmfamset.R |only kstMatrix-3.0-0/kstMatrix/R/kmspace.kmsurmisefunction.R |only kstMatrix-3.0-0/kstMatrix/R/kmspace.kmsurmiserelation.R |only kstMatrix-3.0-0/kstMatrix/R/kmsrvalidate.R | 2 kstMatrix-3.0-0/kstMatrix/R/kmsubstructure.R |only kstMatrix-3.0-0/kstMatrix/R/kmsurmisefunction.R | 9 kstMatrix-3.0-0/kstMatrix/R/kmsurmiserelation.R | 4 kstMatrix-3.0-0/kstMatrix/R/kmtrivial.R | 7 kstMatrix-3.0-0/kstMatrix/R/kmunion.R |only kstMatrix-3.0-0/kstMatrix/R/kmunion.famset.R |only kstMatrix-3.0-0/kstMatrix/R/kmunion.kmbasis.R |only kstMatrix-3.0-0/kstMatrix/R/kmunion.kmspace.R |only kstMatrix-3.0-0/kstMatrix/R/kmunion.kmstructure.R |only kstMatrix-3.0-0/kstMatrix/R/kmunion.kmsurmisefunction.R |only kstMatrix-3.0-0/kstMatrix/R/kmunion.kmsurmiserelation.R |only kstMatrix-3.0-0/kstMatrix/R/kmunionclosure.R | 34 kstMatrix-3.0-0/kstMatrix/R/kmvalidate.R | 2 kstMatrix-3.0-0/kstMatrix/R/phsg.R | 2 kstMatrix-3.0-0/kstMatrix/R/plot.R | 880 ++++++- kstMatrix-3.0-0/kstMatrix/R/readwrite.R | 64 kstMatrix-3.0-0/kstMatrix/R/xpl.R | 1 kstMatrix-3.0-0/kstMatrix/data/cad.rda |binary kstMatrix-3.0-0/kstMatrix/data/fractions.rda |binary kstMatrix-3.0-0/kstMatrix/data/readwrite.rda |binary kstMatrix-3.0-0/kstMatrix/data/xpl.rda |binary kstMatrix-3.0-0/kstMatrix/inst/CITATION |only kstMatrix-3.0-0/kstMatrix/inst/doc/kstMatrix.R | 57 kstMatrix-3.0-0/kstMatrix/inst/doc/kstMatrix.Rmd | 270 +- kstMatrix-3.0-0/kstMatrix/inst/doc/kstMatrix.html | 1161 +++++++--- kstMatrix-3.0-0/kstMatrix/man/binary_matrix_product.Rd |only kstMatrix-3.0-0/kstMatrix/man/cad.Rd | 8 kstMatrix-3.0-0/kstMatrix/man/fractions.Rd | 8 kstMatrix-3.0-0/kstMatrix/man/kmSF2basis.Rd | 24 kstMatrix-3.0-0/kstMatrix/man/kmSR2basis.Rd | 24 kstMatrix-3.0-0/kstMatrix/man/kmSRdiagram.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmSRvalidate.Rd | 7 kstMatrix-3.0-0/kstMatrix/man/kmassess.Rd | 4 kstMatrix-3.0-0/kstMatrix/man/kmassessbayesian.Rd | 4 kstMatrix-3.0-0/kstMatrix/man/kmassesshalfsplit.Rd | 4 kstMatrix-3.0-0/kstMatrix/man/kmassessinformative.Rd | 6 kstMatrix-3.0-0/kstMatrix/man/kmassessmentsimulation.Rd | 4 kstMatrix-3.0-0/kstMatrix/man/kmassessmultiplicative.Rd | 4 kstMatrix-3.0-0/kstMatrix/man/kmbasis.Rd | 30 kstMatrix-3.0-0/kstMatrix/man/kmbasisdiagram.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmbasisfringe.Rd | 9 kstMatrix-3.0-0/kstMatrix/man/kmbasisneighbourhood.Rd | 9 kstMatrix-3.0-0/kstMatrix/man/kmclosure.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmcolors.Rd | 12 kstMatrix-3.0-0/kstMatrix/man/kmdist.Rd | 7 kstMatrix-3.0-0/kstMatrix/man/kmdoubleequal.Rd | 6 kstMatrix-3.0-0/kstMatrix/man/kmeqreduction.Rd | 15 kstMatrix-3.0-0/kstMatrix/man/kmexpand.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmfamset.Rd | 1 kstMatrix-3.0-0/kstMatrix/man/kmfringe.Rd | 9 kstMatrix-3.0-0/kstMatrix/man/kmgenerate.Rd | 10 kstMatrix-3.0-0/kstMatrix/man/kmgradations.Rd | 13 kstMatrix-3.0-0/kstMatrix/man/kmhasse.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmheights.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmiita2SR.Rd | 12 kstMatrix-3.0-0/kstMatrix/man/kmintersection.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmintersectionclosure.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmiswellgraded.Rd | 15 kstMatrix-3.0-0/kstMatrix/man/kmlearningpathmatrices.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmlearningpaths.Rd | 31 kstMatrix-3.0-0/kstMatrix/man/kmmesh.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmminimalfamset.Rd | 5 kstMatrix-3.0-0/kstMatrix/man/kmneighbourhood.Rd | 24 kstMatrix-3.0-0/kstMatrix/man/kmnotions.Rd | 12 kstMatrix-3.0-0/kstMatrix/man/kmprettyprint.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmqspace.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmrefine.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmsetiselement.Rd | 5 kstMatrix-3.0-0/kstMatrix/man/kmsimulate.Rd | 10 kstMatrix-3.0-0/kstMatrix/man/kmspace.Rd | 39 kstMatrix-3.0-0/kstMatrix/man/kmstructure.Rd | 1 kstMatrix-3.0-0/kstMatrix/man/kmsubstructure.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmsurmisefunction.Rd | 14 kstMatrix-3.0-0/kstMatrix/man/kmsurmiserelation.Rd | 10 kstMatrix-3.0-0/kstMatrix/man/kmsymmsetdiff.Rd | 5 kstMatrix-3.0-0/kstMatrix/man/kmtrivial.Rd | 24 kstMatrix-3.0-0/kstMatrix/man/kmunion.Rd |only kstMatrix-3.0-0/kstMatrix/man/kmunionclosure.Rd | 35 kstMatrix-3.0-0/kstMatrix/man/kmvalidate.Rd | 9 kstMatrix-3.0-0/kstMatrix/man/phsg.Rd | 8 kstMatrix-3.0-0/kstMatrix/man/plot.Rd | 87 kstMatrix-3.0-0/kstMatrix/man/readwrite.Rd | 8 kstMatrix-3.0-0/kstMatrix/man/xpl.Rd | 8 kstMatrix-3.0-0/kstMatrix/vignettes/SR.jpeg |only kstMatrix-3.0-0/kstMatrix/vignettes/emptyhead.jpeg |only kstMatrix-3.0-0/kstMatrix/vignettes/horizontal.jpeg |only kstMatrix-3.0-0/kstMatrix/vignettes/kstMatrix-Classes.png |only kstMatrix-3.0-0/kstMatrix/vignettes/kstMatrix.Rmd | 270 +- kstMatrix-3.0-0/kstMatrix/vignettes/neighbourhood.jpeg |only kstMatrix-3.0-0/kstMatrix/vignettes/neighbourhood2.png |only kstMatrix-3.0-0/kstMatrix/vignettes/space.jpeg |only 159 files changed, 2915 insertions(+), 1206 deletions(-)
Title: Improve the Coherence of Your Time Series Data
Description: 'R' version of 'G-Series', Statistics Canada's generalized system devoted
to the benchmarking and reconciliation of time series data. The methods
used in 'G-Series' essentially come from Dagum, E. B., and P. Cholette
(2006) <doi:10.1007/0-387-35439-5>.
Author: Michel Ferland [aut, cre],
Statistics Canada [cph, fnd]
Maintainer: Michel Ferland <michel.ferland@statcan.gc.ca>
Diff between gseries versions 3.0.2 dated 2025-06-18 and 3.0.3 dated 2026-09-01
DESCRIPTION | 10 MD5 | 86 +- NEWS.md | 20 R/benchmarking.R | 4 R/data.R | 2 R/plot_graphTable.R | 3 R/sysdata.rda |binary R/tsbalancing.R | 127 ++- R/tsraking.R | 2 R/utils-common.R | 2 README.md | 14 build/partial.rdb |binary build/vignette.rds |binary data/alternate_osqp_sequence.rda |binary data/default_osqp_sequence.rda |binary inst/doc/benchmarking-demo-script.R | 468 ++++++++----- inst/doc/benchmarking-demo-script.Rmd | 468 ++++++++----- inst/doc/benchmarking-demo-script.html | 858 ++++++++++++++----------- inst/doc/gseries.Rmd | 4 inst/doc/gseries.html | 6 inst/doc/osqp-settings-sequence-dataframe.html | 84 +- man/bench_graphs.Rd | 43 - man/benchmarking.Rd | 182 +++-- man/build_balancing_problem.Rd | 54 - man/build_raking_problem.Rd | 40 - man/gs.build_proc_grps.Rd | 92 +- man/gseries-package.Rd | 5 man/osqp_settings_sequence.Rd | 6 man/plot_benchAdj.Rd | 43 - man/plot_graphTable.Rd | 34 man/rkMeta_to_blSpecs.Rd | 16 man/stack_bmkDF.Rd | 14 man/stack_tsDF.Rd | 12 man/stock_benchmarking.Rd | 284 ++++---- man/time_values_conv.Rd | 4 man/tsDF_to_ts.Rd | 33 man/ts_to_bmkDF.Rd | 48 - man/ts_to_tsDF.Rd | 7 man/tsbalancing.Rd | 390 ++++++----- man/tsraking.Rd | 134 ++- man/tsraking_driver.Rd | 170 +++- man/unstack_tsDF.Rd | 42 - vignettes/benchmarking-demo-script.Rmd | 468 ++++++++----- vignettes/gseries.Rmd | 4 44 files changed, 2591 insertions(+), 1692 deletions(-)
Title: Create Upset Plots
Description: Create Upset plots using a combination of 'ggplot2' and 'patchwork'.
Author: Stevie Pederson [aut, cre] ,
Lachlan Baer [ctb]
Maintainer: Stevie Pederson <stephen.pederson.au@gmail.com>
Diff between SimpleUpset versions 0.1.5 dated 2026-06-30 and 0.1.6 dated 2026-09-01
DESCRIPTION | 8 +++--- MD5 | 8 +++--- NAMESPACE | 56 +++++++++++++++++++++++++-------------------- R/defaults.R | 4 +-- inst/doc/introduction.html | 18 +++++++------- 5 files changed, 51 insertions(+), 43 deletions(-)
Title: Production Function Estimation
Description: Implements the methods proposed by Olley, G.S. and Pakes, A. (1996) <doi:10.2307/2171831>, Levinsohn, J. and Petrin, A. (2003) <doi:10.1111/1467-937X.00246>, Ackerberg, D.A. and Caves, K. and Frazer, G. (2015) <doi:10.3982/ECTA13408> and Wooldridge, J.M. (2009) <doi:10.1016/j.econlet.2009.04.026> for structural productivity estimation.
Author: Gabriele Rovigatti [aut, cre]
Maintainer: Gabriele Rovigatti <gabriele.rovigatti@gmail.com>
Diff between prodest versions 1.0.1 dated 2018-06-19 and 1.0.2 dated 2026-09-01
prodest-1.0.1/prodest/inst/doc |only prodest-1.0.2/prodest/DESCRIPTION | 20 - prodest-1.0.2/prodest/MD5 | 54 ++-- prodest-1.0.2/prodest/NEWS | 25 + prodest-1.0.2/prodest/R/ClassMethods.R | 2 prodest-1.0.2/prodest/R/auxFun.R | 156 ++++++++++-- prodest-1.0.2/prodest/R/panelSim.R | 16 - prodest-1.0.2/prodest/R/prodestACF.R | 294 +++++++++++++++-------- prodest-1.0.2/prodest/R/prodestOPLP.R | 24 - prodest-1.0.2/prodest/README.md | 43 +-- prodest-1.0.2/prodest/data/chilean.rda |binary prodest-1.0.2/prodest/inst/CITATION | 49 ++- prodest-1.0.2/prodest/man/block.boot.resample.Rd | 68 ++--- prodest-1.0.2/prodest/man/checkM.Rd | 2 prodest-1.0.2/prodest/man/checkMD.Rd | 2 prodest-1.0.2/prodest/man/chilean.Rd | 77 ++---- prodest-1.0.2/prodest/man/gACF.Rd | 100 +++---- prodest-1.0.2/prodest/man/gOPLP.Rd | 2 prodest-1.0.2/prodest/man/lagPanel.Rd | 68 ++--- prodest-1.0.2/prodest/man/method-summary.Rd | 6 prodest-1.0.2/prodest/man/panelSim.Rd | 60 ++-- prodest-1.0.2/prodest/man/prodestACF.Rd | 12 prodest-1.0.2/prodest/man/prodestLP.Rd | 9 prodest-1.0.2/prodest/man/prodestOP.Rd | 16 - prodest-1.0.2/prodest/man/prodestROB.Rd | 4 prodest-1.0.2/prodest/man/prodestWRDG.Rd | 4 prodest-1.0.2/prodest/man/prodestWRDG_GMM.Rd | 4 prodest-1.0.2/prodest/man/weightM.Rd | 2 prodest-1.0.2/prodest/tests |only 29 files changed, 688 insertions(+), 431 deletions(-)
Title: Querying and Managing Large Biodiversity Occurrence Datasets
Description: Facilitates the gathering of biodiversity occurrence data
from disparate sources. Metadata is managed throughout the process to facilitate
reporting and enhanced ability to repeat analyses.
Author: Hannah L. Owens [aut, cre] ,
Cory Merow [aut] ,
Brian Maitner [aut] ,
Jamie M. Kass [aut] ,
Vijay Barve [aut] ,
Robert P. Guralnick [aut] ,
Damiano Oldoni [rev] for rOpenSci, see
<https://github.com/ropensci/software-review/issues/407>)
Maintainer: Hannah L. Owens <hannah.owens@gmail.com>
Diff between occCite versions 0.6.2 dated 2026-06-29 and 0.6.3 dated 2026-09-01
occCite-0.6.2/occCite/inst/extdata/0169441-210914110416597.zip |only occCite-0.6.2/occCite/inst/extdata/Protea_cynaroides/0169441-210914110416597.zip |only occCite-0.6.2/occCite/inst/extdata/Tetrapturus_angustirostris/0006577-190621201848488.zip |only occCite-0.6.2/occCite/inst/extdata/Tetrapturus_belone/0006578-190621201848488.zip |only occCite-0.6.2/occCite/inst/extdata/Tetrapturus_pfluegeri/0006585-190621201848488.zip |only occCite-0.6.3/occCite/DESCRIPTION | 8 occCite-0.6.3/occCite/MD5 | 40 +- occCite-0.6.3/occCite/NAMESPACE | 52 +- occCite-0.6.3/occCite/NEWS.md | 5 occCite-0.6.3/occCite/R/gbifRetriever.R | 9 occCite-0.6.3/occCite/R/getGBIFpoints.R | 6 occCite-0.6.3/occCite/R/studyTaxonList.R | 2 occCite-0.6.3/occCite/R/taxonRectification.R | 15 occCite-0.6.3/occCite/inst/doc/a_Simple.R | 2 occCite-0.6.3/occCite/inst/doc/a_Simple.Rmd | 2 occCite-0.6.3/occCite/inst/doc/a_Simple.html | 12 occCite-0.6.3/occCite/inst/doc/b_Advanced.html | 197 ++++------ occCite-0.6.3/occCite/inst/extdata/0049045-260806074905277.zip |only occCite-0.6.3/occCite/inst/extdata/Protea_cynaroides/0049097-260806074905277.zip |only occCite-0.6.3/occCite/inst/extdata/Tetrapturus_angustirostris/0049296-260806074905277.zip |only occCite-0.6.3/occCite/inst/extdata/Tetrapturus_belone/0049304-260806074905277.zip |only occCite-0.6.3/occCite/inst/extdata/Tetrapturus_pfluegeri/0049310-260806074905277.zip |only occCite-0.6.3/occCite/man/studyTaxonList.Rd | 2 occCite-0.6.3/occCite/man/taxonRectification.Rd | 2 occCite-0.6.3/occCite/tests/testthat/test-taxonRectification.R | 12 occCite-0.6.3/occCite/vignettes/a_Simple.Rmd | 2 26 files changed, 181 insertions(+), 187 deletions(-)
Title: Lightweight Tables via JSON Specs and JavaScript
Description: A lightweight grammar of tables. Build a table by declaring a JSON
spec (titles, spanners, row groups, footnotes, formatting functions, etc.); a tiny
vanilla JavaScript runtime builds the HTML table from the spec on page
load. No 'sass', no 'V8', no 'htmlwidgets' — just base R and 'xfun'
('htmltools' is used only for the optional Shiny binding).
Author: Yihui Xie [aut, cre, cph]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between lt versions 0.3 dated 2026-08-19 and 0.4 dated 2026-09-01
DESCRIPTION | 10 +++--- MD5 | 28 ++++++++-------- NEWS.md | 6 +++ R/lt.R | 6 +++ R/render.R | 13 ++++++- R/tab.R | 41 ++++++++++++++++++++---- README.md | 4 +- inst/www/lt.js | 37 +++++++++++++++++++--- man/lt.Rd | 9 +++++ man/lt_footnote.Rd | 18 ++++++++++ man/lt_format.Rd | 8 ++++ man/lt_sub.Rd | 7 ++-- tests/test-ci/test-js.R | 75 +++++++++++++++++++++++++++++++++++++++++++-- tests/testit/test-render.R | 17 ++++++++++ tests/testit/test-tab.R | 44 ++++++++++++++++++++++++++ 15 files changed, 283 insertions(+), 40 deletions(-)
Title: Random Hazard Forests
Description: Random Hazard Forests (RHF) extend Random Survival
Forests (RSF) by directly estimating the hazard function and by
accommodating time-dependent covariates through counting-process
style inputs. The package fits tree ensembles for dynamic survival
prediction, returning hazard, cumulative hazard, integrated hazard,
and related performance summaries for training and test data. The
methods build on Random Survival Forests described by Ishwaran et
al. (2008) <doi:10.1214/08-AOAS169> and on nonparametric hazard
modeling with time-dependent covariates described by Lee et
al. (2021) <doi:10.1214/20-AOS2028>.
Author: Hemant Ishwaran [aut],
Udaya B. Kogalur [aut, cre]
Maintainer: Udaya B. Kogalur <ubk@kogalur.com>
Diff between randomForestRHF versions 2.0.0 dated 2026-08-28 and 2.0.3 dated 2026-09-01
DESCRIPTION | 8 - MD5 | 30 ++--- NEWS.md | 8 + R/auct.rhf.R | 111 +++++++++++++++++++- R/predict.rhf.R | 10 + R/predict.rhf.workhorse.R | 40 ++++++- R/rhf.R | 36 ++++++ R/rhf.workhorse.R | 10 + R/tune.treesize.rhf.R | 189 ++++++++++++++--------------------- R/utilities_additional.R | 17 +++ R/utilities_tdc.R | 248 ++++++++++++++++++++++++++++++++++++++++++++++ man/predict.rhf.Rd | 67 ++++++++---- man/rhf.Rd | 177 +++++++++++++++++++------------- man/tune.treesize.rhf.Rd | 61 ++++++++--- src/global.h | 1 src/processEnsemble.c | 50 +++++++++ 16 files changed, 806 insertions(+), 257 deletions(-)
More information about randomForestRHF at CRAN
Permanent link
Title: Dynamic Documents for R
Description: Convert R Markdown documents into a variety of formats.
Author: JJ Allaire [aut],
Yihui Xie [aut, cre] ,
Christophe Dervieux [aut] ,
Jonathan McPherson [aut],
Javier Luraschi [aut],
Kevin Ushey [aut],
Aron Atkins [aut],
Hadley Wickham [aut],
Joe Cheng [aut],
Winston Chang [aut],
Richard Iannone [aut] ,
Andrew Dun [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between rmarkdown versions 2.31 dated 2026-03-26 and 2.32 dated 2026-09-01
rmarkdown-2.31/rmarkdown/inst/rmd/latex |only rmarkdown-2.32/rmarkdown/DESCRIPTION | 15 rmarkdown-2.32/rmarkdown/LICENSE |only rmarkdown-2.32/rmarkdown/MD5 | 140 + rmarkdown-2.32/rmarkdown/NAMESPACE | 20 rmarkdown-2.32/rmarkdown/NEWS.md | 26 rmarkdown-2.32/rmarkdown/R/beamer_presentation.R | 99 - rmarkdown-2.32/rmarkdown/R/github_document.R | 14 rmarkdown-2.32/rmarkdown/R/html_dependencies.R | 22 rmarkdown-2.32/rmarkdown/R/html_document.R | 10 rmarkdown-2.32/rmarkdown/R/html_document_base.R | 5 rmarkdown-2.32/rmarkdown/R/html_fragment.R | 2 rmarkdown-2.32/rmarkdown/R/html_resources.R | 13 rmarkdown-2.32/rmarkdown/R/html_vignette.R | 2 rmarkdown-2.32/rmarkdown/R/ioslides_presentation.R | 20 rmarkdown-2.32/rmarkdown/R/md_document.R | 7 rmarkdown-2.32/rmarkdown/R/odt_document.R | 2 rmarkdown-2.32/rmarkdown/R/output_format.R | 2 rmarkdown-2.32/rmarkdown/R/pandoc.R | 26 rmarkdown-2.32/rmarkdown/R/pdf_document.R | 16 rmarkdown-2.32/rmarkdown/R/powerpoint_presentation.R | 3 rmarkdown-2.32/rmarkdown/R/render.R | 65 rmarkdown-2.32/rmarkdown/R/rtf_document.R | 2 rmarkdown-2.32/rmarkdown/R/slidy_presentation.R | 2 rmarkdown-2.32/rmarkdown/R/util.R | 12 rmarkdown-2.32/rmarkdown/R/word_document.R | 6 rmarkdown-2.32/rmarkdown/README.md | 6 rmarkdown-2.32/rmarkdown/build/vignette.rds |binary rmarkdown-2.32/rmarkdown/inst/CITATION | 4 rmarkdown-2.32/rmarkdown/inst/COPYING | 701 ---------- rmarkdown-2.32/rmarkdown/inst/doc/lua-filters.Rmd | 4 rmarkdown-2.32/rmarkdown/inst/doc/lua-filters.html | 4 rmarkdown-2.32/rmarkdown/inst/doc/rmarkdown.R | 2 rmarkdown-2.32/rmarkdown/inst/doc/rmarkdown.Rmd | 52 rmarkdown-2.32/rmarkdown/inst/doc/rmarkdown.html | 71 - rmarkdown-2.32/rmarkdown/inst/rmarkdown/lua/extract-data-uri.lua |only rmarkdown-2.32/rmarkdown/inst/rmarkdown/lua/latex-div.lua | 9 rmarkdown-2.32/rmarkdown/inst/rmarkdown/lua/number-sections.lua | 9 rmarkdown-2.32/rmarkdown/inst/rmarkdown/lua/pagebreak.lua | 10 rmarkdown-2.32/rmarkdown/inst/rmarkdown/lua/shared.lua | 16 rmarkdown-2.32/rmarkdown/inst/rmarkdown/templates/html_vignette/skeleton/skeleton.Rmd | 2 rmarkdown-2.32/rmarkdown/inst/rmd/ioslides/ioslides_presentation.lua | 8 rmarkdown-2.32/rmarkdown/inst/rmd/site/index.Rmd | 2 rmarkdown-2.32/rmarkdown/man/beamer_presentation.Rd | 4 rmarkdown-2.32/rmarkdown/man/context_document.Rd | 2 rmarkdown-2.32/rmarkdown/man/github_document.Rd | 2 rmarkdown-2.32/rmarkdown/man/html_document.Rd | 8 rmarkdown-2.32/rmarkdown/man/html_fragment.Rd | 4 rmarkdown-2.32/rmarkdown/man/html_vignette.Rd | 4 rmarkdown-2.32/rmarkdown/man/ioslides_presentation.Rd | 4 rmarkdown-2.32/rmarkdown/man/md_document.Rd | 4 rmarkdown-2.32/rmarkdown/man/metadata.Rd | 5 rmarkdown-2.32/rmarkdown/man/odt_document.Rd | 2 rmarkdown-2.32/rmarkdown/man/output_format.Rd | 2 rmarkdown-2.32/rmarkdown/man/output_metadata.Rd | 1 rmarkdown-2.32/rmarkdown/man/pandoc_available.Rd | 2 rmarkdown-2.32/rmarkdown/man/pdf_document.Rd | 4 rmarkdown-2.32/rmarkdown/man/powerpoint_presentation.Rd | 2 rmarkdown-2.32/rmarkdown/man/rmarkdown-package.Rd | 3 rmarkdown-2.32/rmarkdown/man/rtf_document.Rd | 2 rmarkdown-2.32/rmarkdown/man/slidy_presentation.Rd | 4 rmarkdown-2.32/rmarkdown/man/word_document.Rd | 4 rmarkdown-2.32/rmarkdown/tests/testthat/helpers.R | 20 rmarkdown-2.32/rmarkdown/tests/testthat/test-draft.R | 14 rmarkdown-2.32/rmarkdown/tests/testthat/test-html_dependencies.R | 47 rmarkdown-2.32/rmarkdown/tests/testthat/test-ioslides-figures.R |only rmarkdown-2.32/rmarkdown/tests/testthat/test-lua-filters.R | 34 rmarkdown-2.32/rmarkdown/tests/testthat/test-pandoc.R | 11 rmarkdown-2.32/rmarkdown/tests/testthat/test-pdf_document.R | 61 rmarkdown-2.32/rmarkdown/tests/testthat/test-resources.R | 65 rmarkdown-2.32/rmarkdown/tests/testthat/test-utils.R | 18 rmarkdown-2.32/rmarkdown/vignettes/lua-filters.Rmd | 4 rmarkdown-2.32/rmarkdown/vignettes/rmarkdown.Rmd | 52 73 files changed, 670 insertions(+), 1150 deletions(-)
Title: Feature Selection (Including Multiple Solutions) and Bayesian
Networks
Description: Many feature selection methods for a wide range of response variables, including minimal, statistically-equivalent and equally-predictive feature subsets. Bayesian network algorithms and related functions are also included. The package name 'MXM' stands for "Mens eX Machina", meaning "Mind from the Machine" in Latin. References: a) Lagani, V. and Athineou, G. and Farcomeni, A. and Tsagris, M. and Tsamardinos, I. (2017). "Feature Selection with the R Package MXM: Discovering Statistically Equivalent Feature Subsets". Journal of Statistical Software, 80(7). <doi:10.18637/jss.v080.i07>. b) Tsagris, M., Lagani, V. and Tsamardinos, I. (2018). "Feature selection for high-dimensional temporal data". BMC Bioinformatics, 19:17. <doi:10.1186/s12859-018-2023-7>. c) Tsagris, M., Borboudakis, G., Lagani, V. and Tsamardinos, I. (2018). "Constraint-based causal discovery with mixed data". International Journal of Data Science and Analytics, 6(1): 19-30. <doi:10.1007/s41060-018-0097-y&g [...truncated...]
Author: Konstantina Biza [aut],
Ioannis Tsamardinos [aut, cph],
Vincenzo Lagani [aut, cph],
Giorgos Athineou [aut],
Michail Tsagris [aut],
Giorgos Borboudakis [ctb],
Anna Roumpelaki [ctb],
Stavros Papadopoulos [cre]
Maintainer: Stavros Papadopoulos <staurospapflor@gmail.com>
This is a re-admission after prior archival of version 1.5.5 dated 2022-08-25
Diff between MXM versions 1.5.5 dated 2022-08-25 and 1.5.8 dated 2026-09-01
DESCRIPTION | 30 - MD5 | 248 ++++----- NEWS |only R/MMPC.R | 2 R/MMPC.timeclass.R | 2 R/SES.timeclass.R | 2 R/beta.mod.R | 2 R/beta.reg.R | 2 R/beta.regs.R | 7 R/betamle.wei.R | 2 R/big.gomp.R | 2 R/censIndCR.R | 2 R/clogit.fsreg.R | 2 R/clogit.fsreg_2.R | 2 R/cond.regs.R | 2 R/corgraph.R | 2 R/cv.gomp.R | 2 R/dag_to_eg.R | 2 R/ebic.regs.R | 2 R/gee.condregs.R | 2 R/generatefolds.R | 10 R/glmm.condregs.R | 2 R/gomp.R | 2 R/mmhc.skel.R | 2 R/mmpc.or.R | 2 R/ordinal.reg.R | 2 R/perm.betaregs.R | 6 R/perm.mmpc.R | 2 R/perm.zipregs.R | 6 R/permCR.R | 2 R/rdag.R | 17 R/ridgereg.cv.R | 17 R/testIndGEEGamma.R | 2 R/testIndGEELogistic.R | 2 R/testIndGEENormLog.R | 2 R/testIndGEEPois.R | 2 R/testIndGEEReg.R | 2 R/testIndGLMMCR.R | 3 R/testIndGLMMGamma.R | 2 R/testIndGLMMLogistic.R | 2 R/testIndGLMMNB.R | 3 R/testIndGLMMNormLog.R | 2 R/testIndGLMMOrdinal.R | 2 R/testIndGLMMPois.R | 3 R/testIndGLMMReg.R | 2 R/testIndLMM.R | 3 R/wald.betaregs.R | 6 R/wald.mmpc.R | 2 R/waldCR.R | 2 R/zinb.mod.R | 2 R/zinb.reg.R | 2 R/zip.reg.R | 2 R/zip.regs.R | 6 build/partial.rdb |only build/vignette.rds |binary inst/COPYRIGHTS |only inst/doc/FS_guide.ltx | 4 inst/doc/FS_guide.pdf |binary inst/doc/MMPC_tutorial.R | 86 +-- inst/doc/MMPC_tutorial.Rmd | 28 - inst/doc/MMPC_tutorial.html | 724 +++++++++------------------- inst/doc/SES_KMVerrou_11_12.R | 10 inst/doc/SES_KMVerrou_11_12.Rmd | 21 inst/doc/SES_KMVerrou_11_12.html | 1006 ++++++++++++++------------------------- inst/doc/article.ltx | 16 inst/doc/article.pdf |binary inst/doc/guide.pdf |binary inst/extdata |only man/MXM-internal.Rd | 18 man/MXMCondIndTests.Rd | 2 man/SES.glmm.Rd | 22 man/bbc.Rd | 2 man/beta.mod.Rd | 2 man/beta.regs.Rd | 2 man/big.fbed.reg.Rd | 25 man/big.gomp.Rd | 16 man/censIndCR.Rd | 12 man/condis.Rd | 2 man/corfs.network.Rd | 2 man/cv.fbed.lmm.reg.Rd | 24 man/cv.gomp.Rd | 10 man/cv.ses.Rd | 2 man/dag2eg.Rd | 11 man/ebic.glmm.bsreg.Rd | 22 man/fbed.gee.reg.Rd | 22 man/fbed.glmm.reg.Rd | 19 man/generatefolds.Rd | 7 man/glmm.bsreg.Rd | 10 man/gomp.Rd | 2 man/is.dag.Rd | 2 man/local.mmhc.skel.Rd | 2 man/logiquant.regs.Rd | 2 man/mb.Rd | 2 man/mmhc.skel.Rd | 2 man/mmpc.glmm.model.Rd | 10 man/mmpc.glmm2.Rd | 8 man/mmpc.or.Rd | 2 man/mmpc.timeclass.model.Rd | 2 man/modeler.Rd | 2 man/nei.Rd | 2 man/ordinal.reg.Rd | 2 man/pc.or.Rd | 2 man/pc.sel.Rd | 2 man/pc.skel.Rd | 2 man/plotnetwork.Rd | 10 man/rdag.Rd | 7 man/read.big.data.Rd | 12 man/reg.fit.Rd | 2 man/ridge.plot.Rd | 2 man/ridge.reg.Rd | 2 man/ridgereg.cv.Rd | 9 man/ses.model.Rd | 2 man/sp.logiregs.Rd | 4 man/tc.plot.Rd | 2 man/testIndTobit.Rd | 4 man/topological_sort.Rd | 2 man/transitiveClosure.Rd | 2 man/undir.path.Rd | 2 man/wald.logisticregs.Rd | 2 man/zip.regs.Rd | 2 vignettes/FS_guide.ltx | 4 vignettes/JSS.bib | 4 vignettes/MMPC_tutorial.Rmd | 28 - vignettes/SES_KMVerrou_11_12.Rmd | 21 vignettes/article.ltx | 16 vignettes/athineou.bib | 43 - vignettes/biblio.bib | 8 127 files changed, 1096 insertions(+), 1708 deletions(-)
Title: Johnson-Neyman Analysis of Two- and Three-Way Interactions
Description: Reports and plots the conditional effect of each variable
involved in a multiplicative interaction across the range of its
moderators, together with the region over which that effect is
distinguishable from zero. Extends the classic framework of Johnson and
Neyman (1936) and Johnson and Fay (1950) <doi:10.1007/BF02288864> to
three-way interactions and to Bayesian models. The single entry point
JN() dispatches on the fitted object, with methods for lm()/glm()
models, 'lme4' models, 'RSiena' and 'multiSiena' results, and matrices
of posterior draws; support for further model classes is added by
writing one jn_input() method. Results are classed objects with print(),
summary() and plot() methods, and the figures carry data-density panels
showing how much empirical support each part of the moderator range has.
A detailed introduction can be found in Krause (2026)
<doi:10.48550/arXiv.2604.22051>.
Author: Robert W. Krause [aut, cre, cph]
Maintainer: Robert W. Krause <robert.w.krause@mailbox.org>
Diff between int3ract versions 1.0.7 dated 2026-05-05 and 2.0.0 dated 2026-09-01
int3ract-1.0.7/int3ract/R/JNK_bayes.R |only int3ract-1.0.7/int3ract/R/JNK_freq.R |only int3ract-2.0.0/int3ract/DESCRIPTION | 31 int3ract-2.0.0/int3ract/MD5 | 54 + int3ract-2.0.0/int3ract/NAMESPACE | 91 ++ int3ract-2.0.0/int3ract/NEWS.md | 145 +++- int3ract-2.0.0/int3ract/R/JN.R |only int3ract-2.0.0/int3ract/R/deprecated.R |only int3ract-2.0.0/int3ract/R/engine.R |only int3ract-2.0.0/int3ract/R/int3ract-package.R |only int3ract-2.0.0/int3ract/R/jn_input.R |only int3ract-2.0.0/int3ract/R/methods.R |only int3ract-2.0.0/int3ract/R/plot.R |only int3ract-2.0.0/int3ract/R/regions.R |only int3ract-2.0.0/int3ract/R/siena.R |only int3ract-2.0.0/int3ract/R/utils.R | 794 ------------------------ int3ract-2.0.0/int3ract/README.md | 158 +++- int3ract-2.0.0/int3ract/build |only int3ract-2.0.0/int3ract/inst/doc |only int3ract-2.0.0/int3ract/man/JN.Rd |only int3ract-2.0.0/int3ract/man/JNK_bayes.Rd | 139 ---- int3ract-2.0.0/int3ract/man/JNK_freq.Rd | 148 +--- int3ract-2.0.0/int3ract/man/as.data.frame.JN.Rd |only int3ract-2.0.0/int3ract/man/int3ract-package.Rd |only int3ract-2.0.0/int3ract/man/jn_input.Rd |only int3ract-2.0.0/int3ract/man/jn_plots.Rd |only int3ract-2.0.0/int3ract/man/jn_regions.Rd |only int3ract-2.0.0/int3ract/man/jn_save.Rd |only int3ract-2.0.0/int3ract/man/jn_style.Rd |only int3ract-2.0.0/int3ract/man/plot.JN.Rd |only int3ract-2.0.0/int3ract/man/print.JN.Rd |only int3ract-2.0.0/int3ract/man/print.JN_list.Rd |only int3ract-2.0.0/int3ract/man/reexports.Rd |only int3ract-2.0.0/int3ract/man/summary.JN.Rd |only int3ract-2.0.0/int3ract/tests |only int3ract-2.0.0/int3ract/vignettes |only 36 files changed, 477 insertions(+), 1083 deletions(-)
Title: Tools for Working with URLs and HTTP
Description: Useful tools for working with HTTP organised by HTTP verbs
(GET(), POST(), etc). Configuration functions make it easy to control
additional request components (authenticate(), add_headers() and so
on).
Author: Hadley Wickham [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between httr versions 1.4.8 dated 2026-02-13 and 1.4.9 dated 2026-09-01
DESCRIPTION | 8 ++--- MD5 | 68 ++++++++++++++++++++++----------------------- NEWS.md | 4 ++ R/http-verb.R | 4 +- build/vignette.rds |binary man/BROWSE.Rd | 16 +++++----- man/DELETE.Rd | 16 +++++----- man/GET.Rd | 16 +++++----- man/HEAD.Rd | 16 +++++----- man/PATCH.Rd | 16 +++++----- man/POST.Rd | 16 +++++----- man/PUT.Rd | 16 +++++----- man/VERB.Rd | 18 +++++------ man/add_headers.Rd | 16 +++++----- man/authenticate.Rd | 16 +++++----- man/config.Rd | 22 +++++++------- man/content.Rd | 16 +++++----- man/handle_pool.Rd | 1 man/http_error.Rd | 10 +++--- man/http_status.Rd | 10 +++--- man/httr-package.Rd | 5 +++ man/oauth1.0_token.Rd | 10 +++--- man/oauth2.0_token.Rd | 10 +++--- man/oauth_app.Rd | 10 +++--- man/oauth_endpoint.Rd | 10 +++--- man/oauth_service_token.Rd | 10 +++--- man/response.Rd | 10 +++--- man/set_config.Rd | 6 +-- man/set_cookies.Rd | 16 +++++----- man/stop_for_status.Rd | 10 +++--- man/timeout.Rd | 18 +++++------ man/use_proxy.Rd | 16 +++++----- man/user_agent.Rd | 16 +++++----- man/verbose.Rd | 16 +++++----- man/with_config.Rd | 6 +-- 35 files changed, 241 insertions(+), 233 deletions(-)
Title: Grammar of Graphics and Plot Helpers for Time Series
Visualization
Description: Extends the capabilities of 'ggplot2' by providing grammatical
elements and plot helpers designed for visualizing temporal patterns. The
package implements a grammar of temporal graphics, which leverages calendar
structures to highlight changes over time. The package also provides plot
helper functions to quickly produce commonly used time series graphics,
including time plots, season plots, and seasonal sub-series plots.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Cynthia A. Huang [aut] ,
Matthew Kay [aut] ,
Rob Hyndman [aut] ,
Earo Wang [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between ggtime versions 0.2.0 dated 2026-02-09 and 1.0.0 dated 2026-09-01
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Title: The Greatest Mathematician Since Antiquity
Description: Display a random fact about Carl Friedrich Gauss based on the
collection curated by Mike Cavers via the <https://web.archive.org/web/*/gaussfacts.com> site.
Author: Dirk Eddelbuettel [aut, cre] ,
Mike Cavers [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between gaussfacts versions 0.0.3 dated 2026-08-23 and 0.0.4 dated 2026-09-01
ChangeLog | 15 +++++++++++++++ DESCRIPTION | 10 +++++----- MD5 | 12 ++++++------ R/gaussfacts.R | 5 ++++- README.md | 4 ++-- inst/NEWS.Rd | 11 +++++++++-- man/gaussfact.Rd | 3 ++- 7 files changed, 43 insertions(+), 17 deletions(-)
Title: Import and Analysis of OMR Data from FormScanner
Description: Import data of tests and questionnaires from FormScanner. FormScanner is an open source software that converts scanned images to data using optical mark recognition (OMR) and it can be downloaded from <https://sourceforge.net/projects/formscanner/>. The spreadsheet file created by FormScanner is imported in a convenient format to perform the analyses provided by the package. These analyses include the conversion of multiple responses to binary (correct/incorrect) data, the computation of the number of corrected responses for each subject or item, scoring using weights,the computation and the graphical representation of the frequencies of the responses to each item and the report of the responses of a few subjects.
Author: Michela Battauz [aut, cre]
Maintainer: Michela Battauz <michela.battauz@uniud.it>
Diff between fsia versions 1.1.1 dated 2017-06-23 and 1.1.2 dated 2026-09-01
DESCRIPTION | 16 ++++++++++------ MD5 | 8 ++++---- inst/NEWS | 5 ++--- man/fsia-package.Rd | 4 ++-- man/report.Rd | 2 +- 5 files changed, 19 insertions(+), 16 deletions(-)
Title: Visualize and Improve Connectedness of Factors in Tables
Description: Visualize the connectedness of factors in two-way tables.
Perform two-way filtering to improve the degree of connectedness.
See Weeks & Williams (1964) <doi:10.1080/00401706.1964.10490188>.
Author: Kevin Wright [aut, cre]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between connected versions 1.1 dated 2025-03-05 and 1.2 dated 2026-09-01
DESCRIPTION | 13 LICENSE |only MD5 | 30 NAMESPACE | 16 NEWS.md | 16 R/data_documentation.R | 41 - R/functions.R | 712 ++++++++++++-------- build/vignette.rds |binary inst/doc/introduction_to_the_connected_package.R | 25 inst/doc/introduction_to_the_connected_package.Rmd | 37 - inst/doc/introduction_to_the_connected_package.html | 110 +-- man/con_concur.Rd | 7 man/con_filter.Rd | 2 man/con_view.Rd | 12 man/connected.Rd |only tests/testthat/test-functions.R | 136 +++ vignettes/introduction_to_the_connected_package.Rmd | 37 - 17 files changed, 739 insertions(+), 455 deletions(-)
Title: Time Series Methods Based on Growth Curves
Description: Provides tools for modelling and forecasting epidemic trajectories
using a dynamic Gompertz model within a state space framework, with the
Kalman filter for robust estimation of non-linear growth. Includes a
reinitialization feature to adapt to new waves, and a leading-indicator
extension that uses a related series moving ahead of the variable of
interest (e.g. cases ahead of hospitalisations) to improve short-horizon
forecasts, with model and lag selection via rolling-origin
cross-validation. Applicable to data at daily, monthly, quarterly, or
annual frequency, and to non-epidemic trajectories with similar dynamics,
such as innovation diffusion and product adoption. Includes functions for
data preprocessing, model fitting, forecast visualization, and accuracy
evaluation using standard error measures. Methods are described in Harvey
and Kattuman (2020) <doi:10.1162/99608f92.828f40de>, Harvey and Kattuman
(2021) <doi:10.1098/rsif.2021.0179>, and Ashby, Harvey, Kattuman, Tang [...truncated...]
Author: Michael Ashby [aut, cre],
Paul Kattuman [aut],
Andrew Harvey [aut],
Edwin Tang [aut],
Craig Thamotheram [aut],
Guglielmo Secchi [aut],
Cambridge Centre for Health Leadership & Enterprise, Cambridge Judge
Business School, University of Cambridge [fnd] [...truncated...]
Maintainer: Michael Ashby <mwa22@cam.ac.uk>
Diff between tsgc versions 0.0 dated 2024-08-26 and 2.0.0 dated 2026-09-01
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tsgc-2.0.0/tsgc/man/reinitialise_dataframe.Rd | 55 tsgc-2.0.0/tsgc/man/seasonalComp.Rd |only tsgc-2.0.0/tsgc/man/sub-.idx_series.Rd |only tsgc-2.0.0/tsgc/man/summary.FilterResults.Rd |only tsgc-2.0.0/tsgc/man/summary.FilterResultsLI.Rd |only tsgc-2.0.0/tsgc/man/summary.SSModelDynamicGompertz.Rd |only tsgc-2.0.0/tsgc/man/summary.SSModelLeadingIndicator.Rd |only tsgc-2.0.0/tsgc/man/tail.idx_series.Rd |only tsgc-2.0.0/tsgc/man/ukitaly.Rd |only tsgc-2.0.0/tsgc/man/write_results.Rd | 98 tsgc-2.0.0/tsgc/man/xts_to_idx.Rd |only tsgc-2.0.0/tsgc/tests/testthat.R | 8 tsgc-2.0.0/tsgc/tests/testthat/test-accessorFns.R |only tsgc-2.0.0/tsgc/tests/testthat/test-boundary-conditions.R |only tsgc-2.0.0/tsgc/tests/testthat/test-data.R | 43 tsgc-2.0.0/tsgc/tests/testthat/test-filterResults.R | 696 + tsgc-2.0.0/tsgc/tests/testthat/test-filterResultsLI.R |only tsgc-2.0.0/tsgc/tests/testthat/test-idx_calendar.R |only tsgc-2.0.0/tsgc/tests/testthat/test-idx_series.R |only tsgc-2.0.0/tsgc/tests/testthat/test-plotting.R | 429 - tsgc-2.0.0/tsgc/tests/testthat/test-ss_model_dyn_gompertz.R |only tsgc-2.0.0/tsgc/tests/testthat/test-ss_model_leading_indicator.R |only tsgc-2.0.0/tsgc/tests/testthat/test-utils.R | 433 + tsgc-2.0.0/tsgc/vignettes/book.bib | 238 tsgc-2.0.0/tsgc/vignettes/tsgc_replication_script.R |only tsgc-2.0.0/tsgc/vignettes/tsgc_vignette.Rmd | 2791 +++++-- 137 files changed, 13297 insertions(+), 5618 deletions(-)
Title: Spatial Concentration and Radius-Based Risk Calculations
Description: Provides computational building blocks for fixed-radius spatial
aggregation, weighted circle-placement problems, hotspot detection, and
polygon-based spatial summaries. The package focuses on efficient
determination of the sum of observations within a given radius, identifying
areas of high local concentration, and aggregating point data to polygon
geometries. These methods are useful for applications such as insurance,
urban analytics, environmental exposure analysis, and other spatial point
pattern workflows. The fixed-radius circle placement problem is discussed
by Chazelle and Lee (1986) <doi:10.1007/BF02238188>, and
related maximum covering problems are described by Church (1974)
<doi:10.1007/BF01942293>.
Author: Martin Haringa [aut, cre]
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between spatialrisk versions 0.8.1 dated 2026-06-16 and 0.8.2 dated 2026-09-01
spatialrisk-0.8.1/spatialrisk/man/plot.Rd |only spatialrisk-0.8.2/spatialrisk/DESCRIPTION | 23 spatialrisk-0.8.2/spatialrisk/MD5 | 85 spatialrisk-0.8.2/spatialrisk/NAMESPACE | 3 spatialrisk-0.8.2/spatialrisk/NEWS.md | 64 spatialrisk-0.8.2/spatialrisk/R/RcppExports.R | 16 spatialrisk-0.8.2/spatialrisk/R/choropleth.R | 10 spatialrisk-0.8.2/spatialrisk/R/concentration_hotspot_indexed.R | 24 spatialrisk-0.8.2/spatialrisk/R/concentration_hotspot_pair_refine.R | 435 +++ spatialrisk-0.8.2/spatialrisk/R/deprecated-aliases.R | 4 spatialrisk-0.8.2/spatialrisk/R/deprecated_highest_concentration.R | 210 - spatialrisk-0.8.2/spatialrisk/R/highest_concentration_terra.R | 199 + spatialrisk-0.8.2/spatialrisk/R/hotspot-workflow.R | 342 ++ spatialrisk-0.8.2/spatialrisk/R/points_within_radius.R | 14 spatialrisk-0.8.2/spatialrisk/R/summarise_points_by_polygon.R | 4 spatialrisk-0.8.2/spatialrisk/R/utils.R | 102 spatialrisk-0.8.2/spatialrisk/build/partial.rdb |only spatialrisk-0.8.2/spatialrisk/build/vignette.rds |binary spatialrisk-0.8.2/spatialrisk/inst/benchmarks/benchmark-hotspot-500k.R | 2 spatialrisk-0.8.2/spatialrisk/inst/benchmarks/benchmark-hotspot-indexed.R | 2 spatialrisk-0.8.2/spatialrisk/inst/doc/fixed-radius-concentration.R | 111 spatialrisk-0.8.2/spatialrisk/inst/doc/fixed-radius-concentration.Rmd | 409 ++- spatialrisk-0.8.2/spatialrisk/inst/doc/fixed-radius-concentration.html | 905 +++++-- spatialrisk-0.8.2/spatialrisk/inst/doc/visualisation.R | 33 spatialrisk-0.8.2/spatialrisk/inst/doc/visualisation.Rmd | 123 - spatialrisk-0.8.2/spatialrisk/inst/doc/visualisation.html | 212 + spatialrisk-0.8.2/spatialrisk/man/choropleth.Rd | 10 spatialrisk-0.8.2/spatialrisk/man/concentration_hotspot.Rd | 127 - spatialrisk-0.8.2/spatialrisk/man/figures/README-unnamed-chunk-10-1.png |only spatialrisk-0.8.2/spatialrisk/man/highest_concentration.Rd | 87 spatialrisk-0.8.2/spatialrisk/man/mw_create.Rd | 10 spatialrisk-0.8.2/spatialrisk/man/neighborhood_gh_search.Rd | 44 spatialrisk-0.8.2/spatialrisk/man/plot.conc.Rd | 26 spatialrisk-0.8.2/spatialrisk/man/plot.neighborhood.Rd |only spatialrisk-0.8.2/spatialrisk/man/points_within_radius.Rd | 14 spatialrisk-0.8.2/spatialrisk/man/prepare_spatialrisk.Rd | 96 spatialrisk-0.8.2/spatialrisk/man/summarise_points_by_polygon.Rd | 4 spatialrisk-0.8.2/spatialrisk/src/RcppExports.cpp | 77 spatialrisk-0.8.2/spatialrisk/src/concentration_hotspot_indexed.cpp | 1196 +++++++++- spatialrisk-0.8.2/spatialrisk/tests/testthat/test-concentration-hotspot-indexed.R | 8 spatialrisk-0.8.2/spatialrisk/tests/testthat/test-concentration-hotspot-pair-refine.R | 315 ++ spatialrisk-0.8.2/spatialrisk/tests/testthat/test-hotspot-point-cell-bounds.R |only spatialrisk-0.8.2/spatialrisk/tests/testthat/test-hotspot-screening-bounds.R |only spatialrisk-0.8.2/spatialrisk/tests/testthat/test-hotspot-workflow-search-state.R |only spatialrisk-0.8.2/spatialrisk/tests/testthat/test_concentration_hotspot.R | 82 spatialrisk-0.8.2/spatialrisk/vignettes/fixed-radius-concentration.Rmd | 409 ++- spatialrisk-0.8.2/spatialrisk/vignettes/visualisation.Rmd | 123 - 47 files changed, 4540 insertions(+), 1420 deletions(-)
Title: Model Visualisation Toolbox for 'easystats' and 'ggplot2'
Description: Provides plotting utilities supporting packages in the 'easystats'
ecosystem (<https://github.com/easystats/easystats>) and some extra themes,
geoms, and scales for 'ggplot2'. Color scales are based on
<https://materialui.co/>.
References: Lüdecke et al. (2021) <doi:10.21105/joss.03393>.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, inv] ,
Indrajeet Patil [aut] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Remi Theriault [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Jeffrey R. Stevens [ctb] ,
Julius Bogomolo [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between see versions 0.14.1 dated 2026-06-29 and 0.14.2 dated 2026-09-01
DESCRIPTION | 20 ++- MD5 | 104 ++++++++++---------- NEWS.md | 29 ++++- R/geom_from_list.R | 1 R/plot.bayesfactor_models.R | 46 +++++--- R/plot.binned_residuals.R | 13 +- R/plot.check_collinearity.R | 14 +- R/plot.check_heteroscedasticity.R | 45 ++++++-- R/plot.check_homogeneity.R | 4 R/plot.check_model.R | 14 +- R/plot.check_normality.R | 45 +++++--- R/plot.check_outliers.R | 10 + R/plot.check_outliers.dots.R | 10 - R/plot.check_overdisp.R | 16 ++- R/plot.check_predictions.R | 46 +++++--- R/plot.compare_parameters.R | 2 R/plot.compare_performance.R | 10 + R/plot.estimate_density.R | 16 ++- R/plot.means_by_group.R | 14 ++ R/plot.p_function.R | 18 ++- R/plot.parameters_brms_meta.R | 10 + R/plot.parameters_model.R | 9 + R/plot.parameters_simulate.R | 11 +- R/plot.performance_simres.R | 14 +- R/plots.R | 2 man/plot.see_bayesfactor_models.Rd | 8 - man/plot.see_check_collinearity.Rd | 5 man/plot.see_check_heteroscedasticity.Rd | 5 man/plot.see_check_normality.Rd | 5 man/plot.see_check_outliers.Rd | 5 man/plot.see_compare_performance.Rd | 5 man/plot.see_dw_groupmeans.Rd | 2 man/plot.see_estimate_density.Rd | 5 man/plot.see_p_function.Rd | 5 man/plot.see_parameters_brms_meta.Rd | 5 man/plot.see_parameters_simulate.Rd | 5 man/plot.see_performance_simres.Rd | 5 man/print.see_performance_pp_check.Rd | 7 - man/see-package.Rd | 1 tests/testthat/test-plot.binned_residuals.R |only tests/testthat/test-plot.check_heteroscedasticity.R | 51 +++++++++ tests/testthat/test-plot.cluster_analysis.R | 14 ++ tests/testthat/test-plot.compare_performance.R | 15 ++ tests/testthat/test-plot.describe_distribution.R | 14 ++ tests/testthat/test-plot.dw_data_tabulate.R | 13 ++ tests/testthat/test-plot.easycormatrix.R | 14 ++ tests/testthat/test-plot.equivalence_test.R | 15 ++ tests/testthat/test-plot.p_function.R |only tests/testthat/test-plot.parameters_pca.R | 16 +++ tests/testthat/test-plot.parameters_simulate.R | 15 ++ tests/testthat/test-plot.point_estimates.R | 32 ++++++ tests/testthat/test-plot.rope.R | 32 ++++++ tests/testthat/test-vdiffr_check_model.R | 22 ++++ tests/testthat/test-vdiffr_check_predictions.R | 10 + 54 files changed, 642 insertions(+), 212 deletions(-)
Title: Hierarchical Bayesian Modeling of Decision-Making Tasks
Description: Fit an array of decision-making tasks with computational models in
a hierarchical Bayesian framework. Can perform hierarchical Bayesian analysis of
various computational models with a single line of coding
(Ahn et al., 2017) <doi:10.1162/CPSY_a_00002>.
Author: CCS Lab [cre],
Woo-Young Ahn [aut],
Nate Haines [aut],
Lei Zhang [aut],
Jinwoo Jeong [ctb],
Harhim Park [ctb],
Jaeyeong Yang [ctb],
Jethro Lee [ctb]
Maintainer: CCS Lab <ccsl.snu@gmail.com>
This is a re-admission after prior archival of version 1.2.1 dated 2022-09-23
Diff between hBayesDM versions 1.2.1 dated 2022-09-23 and 2.0.0 dated 2026-09-01
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hBayesDM-2.0.0/hBayesDM/inst/stan_files/prl_ewa.stan | 149 +- hBayesDM-2.0.0/hBayesDM/inst/stan_files/prl_fictitious.stan | 181 +- hBayesDM-2.0.0/hBayesDM/inst/stan_files/prl_fictitious_multipleB.stan | 201 +- hBayesDM-2.0.0/hBayesDM/inst/stan_files/prl_fictitious_rp.stan | 209 +-- hBayesDM-2.0.0/hBayesDM/inst/stan_files/prl_fictitious_rp_woa.stan | 197 +- hBayesDM-2.0.0/hBayesDM/inst/stan_files/prl_fictitious_woa.stan | 179 +- hBayesDM-2.0.0/hBayesDM/inst/stan_files/prl_rp.stan | 155 +- hBayesDM-2.0.0/hBayesDM/inst/stan_files/prl_rp_multipleB.stan | 163 +- hBayesDM-2.0.0/hBayesDM/inst/stan_files/pstRT_ddm.stan | 136 -- hBayesDM-2.0.0/hBayesDM/inst/stan_files/pstRT_rlddm1.stan | 192 +- hBayesDM-2.0.0/hBayesDM/inst/stan_files/pstRT_rlddm6.stan | 229 +-- hBayesDM-2.0.0/hBayesDM/inst/stan_files/pst_Q.stan | 112 - hBayesDM-2.0.0/hBayesDM/inst/stan_files/pst_gainloss_Q.stan | 112 - hBayesDM-2.0.0/hBayesDM/inst/stan_files/ra_noLA.stan | 93 - hBayesDM-2.0.0/hBayesDM/inst/stan_files/ra_noRA.stan | 97 - hBayesDM-2.0.0/hBayesDM/inst/stan_files/ra_prospect.stan | 115 - hBayesDM-2.0.0/hBayesDM/inst/stan_files/rdt_happiness.stan | 159 +- hBayesDM-2.0.0/hBayesDM/inst/stan_files/task2AFC_sdt.stan | 67 hBayesDM-2.0.0/hBayesDM/inst/stan_files/ts_par4.stan | 327 ++-- hBayesDM-2.0.0/hBayesDM/inst/stan_files/ts_par6.stan | 341 ++--- hBayesDM-2.0.0/hBayesDM/inst/stan_files/ts_par7.stan | 347 ++--- hBayesDM-2.0.0/hBayesDM/inst/stan_files/ug_bayes.stan | 185 +- hBayesDM-2.0.0/hBayesDM/inst/stan_files/ug_delta.stan | 126 - hBayesDM-2.0.0/hBayesDM/inst/stan_files/wcs_sql.stan | 201 +- hBayesDM-2.0.0/hBayesDM/man/alt_delta.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/alt_gamma.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/bandit2arm_delta.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/bandit4arm2_kalman_filter.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/bandit4arm_2par_lapse.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/bandit4arm_4par.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/bandit4arm_lapse.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/bandit4arm_lapse_decay.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/bandit4arm_singleA_lapse.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/banditNarm_2par_lapse.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/banditNarm_4par.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/banditNarm_delta.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/banditNarm_kalman_filter.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/banditNarm_lapse.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/banditNarm_lapse_decay.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/banditNarm_singleA_lapse.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/bart_ewmv.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/bart_par4.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/cgt_cm.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/choiceRT_ddm.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/choiceRT_ddm_single.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/choiceRT_lba.Rd | 30 hBayesDM-2.0.0/hBayesDM/man/choiceRT_lba_single.Rd | 30 hBayesDM-2.0.0/hBayesDM/man/cra_exp.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/cra_linear.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/dbdm_prob_weight.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/dd_cs.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/dd_cs_single.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/dd_exp.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/dd_hyperbolic.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/dd_hyperbolic_single.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/dot-hbayesdm_compile.Rd |only hBayesDM-2.0.0/hBayesDM/man/dot-hbayesdm_extract.Rd |only hBayesDM-2.0.0/hBayesDM/man/dot-hbayesdm_fit.Rd |only hBayesDM-2.0.0/hBayesDM/man/dot-hbayesdm_resolve_inits.Rd |only hBayesDM-2.0.0/hBayesDM/man/dot-hbayesdm_stan_file.Rd |only hBayesDM-2.0.0/hBayesDM/man/extract_ic.Rd | 3 hBayesDM-2.0.0/hBayesDM/man/gng_m1.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/gng_m2.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/gng_m3.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/gng_m4.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/hBayesDM_model.Rd | 9 hBayesDM-2.0.0/hBayesDM/man/hbayesdm-cmdstan.Rd |only hBayesDM-2.0.0/hBayesDM/man/hdi.Rd |only hBayesDM-2.0.0/hBayesDM/man/hgf_ibrb.Rd |only hBayesDM-2.0.0/hBayesDM/man/hgf_ibrb_single.Rd |only hBayesDM-2.0.0/hBayesDM/man/igt_orl.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/igt_pvl_decay.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/igt_pvl_delta.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/igt_vpp.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/peer_ocu.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/plot.hBayesDM.Rd | 8 hBayesDM-2.0.0/hBayesDM/man/plot_dist.Rd |only hBayesDM-2.0.0/hBayesDM/man/plot_hdi.Rd |only hBayesDM-2.0.0/hBayesDM/man/plot_ind.Rd |only hBayesDM-2.0.0/hBayesDM/man/print_fit.Rd |only hBayesDM-2.0.0/hBayesDM/man/prl_ewa.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/prl_fictitious.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/prl_fictitious_multipleB.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/prl_fictitious_rp.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/prl_fictitious_rp_woa.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/prl_fictitious_woa.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/prl_rp.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/prl_rp_multipleB.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/pstRT_ddm.Rd | 44 hBayesDM-2.0.0/hBayesDM/man/pstRT_rlddm1.Rd | 46 hBayesDM-2.0.0/hBayesDM/man/pstRT_rlddm6.Rd | 46 hBayesDM-2.0.0/hBayesDM/man/pst_Q.Rd | 44 hBayesDM-2.0.0/hBayesDM/man/pst_gainloss_Q.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/ra_noLA.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/ra_noRA.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/ra_prospect.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/rdt_happiness.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/task2AFC_sdt.Rd | 44 hBayesDM-2.0.0/hBayesDM/man/ts_par4.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/ts_par6.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/ts_par7.Rd | 42 hBayesDM-2.0.0/hBayesDM/man/ug_bayes.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/ug_delta.Rd | 41 hBayesDM-2.0.0/hBayesDM/man/wcs_sql.Rd | 42 hBayesDM-2.0.0/hBayesDM/tests/testthat/test_hgf_ibrb.R |only hBayesDM-2.0.0/hBayesDM/tests/testthat/test_hgf_ibrb_single.R |only hBayesDM-2.0.0/hBayesDM/tests/testthat/test_user_facing.R |only 251 files changed, 8571 insertions(+), 6836 deletions(-)
Title: Experimental Design and Randomization Methods for Biomedical and
Veterinary Research
Description: Provides reproducible methods for experimental design and
treatment allocation in biomedical, veterinary, agricultural, and clinical
research. Includes simple, fixed-block, variable-block, stratified,
stratified-block, cluster, matched-pair, restricted, minimization, and
covariate-adaptive randomization, together with completely randomized,
randomized-block, factorial, split-plot, Latin square, and crossover
designs. Also provides allocation summaries, balance diagnostics,
schedule export, and visualization. The methods are based on established
principles of randomization and experimental design; see Rosenberger and
Lachin (2015, ISBN:9781118742242) and Jones and Kenward (2014,
ISBN:9781439861424).
Author: Vinodhkumar Obli Rajendran [aut, cre],
Keerthi Aaradhana [aut]
Maintainer: Vinodhkumar Obli Rajendran <vinodhkumar.rajendran@gmail.com>
Diff between ExpDesignR versions 0.1.0 dated 2026-08-27 and 1.0.0 dated 2026-09-01
DESCRIPTION | 31 +- MD5 | 62 +++- NAMESPACE | 80 +++--- NEWS.md | 47 ++- R/block_randomization.R | 163 ++++++++---- R/cluster_randomization.R | 73 +---- R/covariate_adaptive_randomization.R |only R/designs_additional.R |only R/matched_pair_randomization.R |only R/minimization_randomization.R |only R/randomization_diagnostics.R |only R/randomization_utils.R |only R/restricted_randomization.R |only R/simple_randomization.R | 62 +--- R/stratified_block_randomization.R |only R/stratified_randomization.R | 107 ++------ R/variable_block_randomization.R |only R/zzz.R |only README.md | 53 +++- inst/doc/getting-started.R | 31 ++ inst/doc/getting-started.Rmd | 68 ++++- inst/doc/getting-started.html | 295 ++++++++++++++++++++++- man/balance_check.Rd |only man/block_randomization.Rd | 21 - man/cluster_randomization.Rd | 18 - man/completely_randomized_design.Rd |only man/covariate_adaptive_randomization.Rd |only man/export_schedule.Rd | 4 man/factorial_design.Rd |only man/matched_pair_randomization.Rd |only man/minimization_randomization.Rd |only man/randomization_diagnostics.Rd |only man/randomized_block_design.Rd |only man/restricted_randomization.Rd |only man/simple_randomization.Rd | 10 man/split_plot_design.Rd |only man/stratified_block_randomization.Rd |only man/stratified_randomization.Rd | 30 -- man/variable_block_randomization.Rd |only tests/testthat/test-block-randomization.R |only tests/testthat/test-core_randomization.R | 8 tests/testthat/test-matched-pair-randomization.R |only tests/testthat/test-phase1.R |only tests/testthat/test-randomization-diagnostics.R |only vignettes/getting-started.Rmd | 68 ++++- 45 files changed, 825 insertions(+), 406 deletions(-)
Title: Bayesian Adaptive Trial Simulator Software (BATSS) for
Generalised Linear Models
Description: Defines operating characteristics of Bayesian Adaptive Trials considering a generalised linear model response via Monte Carlo simulations of Bayesian GLM fitted via integrated Laplace approximations (INLA).
Author: Dominique-Laurent Couturier [aut, cre] ,
Liz Ryan [aut] ,
Rainer Puhr [aut],
Thomas Jaki [aut] ,
Stephane Heritier [aut]
Maintainer: Dominique-Laurent Couturier <dominique.couturier@mrc-bsu.cam.ac.uk>
Diff between BATSS versions 1.2.0 dated 2026-05-28 and 1.2.1 dated 2026-09-01
DESCRIPTION | 6 +++--- MD5 | 4 ++-- R/glm.R | 2 +- 3 files changed, 6 insertions(+), 6 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-04-16 2.4.6
2019-11-03 2.4.5
2019-10-16 2.4.4
2019-08-20 2.4.3
2019-05-27 2.4.2
2019-01-10 2.4.1
2018-08-08 2.4
2018-06-08 2.3
2018-03-03 2.2
2018-01-03 2.1
2017-12-05 2.0
2017-07-23 1.9
2017-06-12 1.8
2017-01-09 1.7
2016-11-23 1.5
2016-10-03 1.4
2016-09-16 1.3.2
2016-09-12 1.3.1
2016-08-23 1.3.0
2016-07-05 1.2.1
2016-06-20 1.2.0
2016-06-13 1.0.3
2016-05-24 1.0.1
2016-05-19 1.0
Title: Import 'OpenStreetMap' Data as Simple Features or Spatial
Objects
Description: Download and import of 'OpenStreetMap' ('OSM') data as 'sf'
or 'sp' objects. 'OSM' data are extracted from the 'Overpass' web
server (<https://overpass-api.de/>) and processed with very fast 'C++'
routines for return to 'R'.
Author: Joan Maspons [aut, cre] ,
Mark Padgham [aut],
Bob Rudis [aut],
Robin Lovelace [aut],
Maelle Salmon [aut],
Andrew Smith [ctb],
James Smith [ctb],
Andrea Gilardi [ctb],
Enrico Spinielli [ctb],
Anthony North [ctb],
Martin Machyna [ctb],
Marcin Kalicinsk [...truncated...]
Maintainer: Joan Maspons <joanmaspons@gmail.com>
Diff between osmdata versions 0.4.0 dated 2026-06-15 and 0.4.1 dated 2026-09-01
DESCRIPTION | 17 ++++---- MD5 | 63 ++++++++++++++++-------------- NAMESPACE | 1 NEWS.md | 13 ++++++ R/elevation.R | 18 +++----- R/features.R | 2 R/get-osmdata-sf.R | 20 ++++++--- R/getbb.R | 3 + R/opq.R | 2 R/overpass-query.R | 52 +++++++++++++++++++------ R/zzz.R | 79 ++++++++++++++++++++++++-------------- README.md | 19 ++++++++- build/vignette.rds |binary inst/doc/osm-sf-translation.html | 4 - inst/doc/osmdata-sc.R | 7 --- inst/doc/osmdata-sc.Rmd | 16 ++----- inst/doc/osmdata-sc.html | 12 ++--- inst/doc/osmdata.R | 2 inst/doc/osmdata.Rmd | 2 inst/doc/osmdata.html | 11 ++--- inst/doc/query-split.html | 4 - man/add_osm_feature.Rd | 2 man/add_osm_features.Rd | 2 man/get_overpass_url.Rd | 3 - man/list_overpass_urls.Rd |only man/osm_elevation.Rd | 13 +++--- man/set_overpass_url.Rd | 26 ++++-------- tests/testthat/mock_no_user_agent |only tests/testthat/mock_user_agent |only tests/testthat/setup.R | 1 tests/testthat/test-osmdata.R | 17 ++++++++ vignettes/osmdata-sc.Rmd | 16 ++----- vignettes/osmdata.Rmd | 2 33 files changed, 261 insertions(+), 168 deletions(-)
Title: Cell Type Annotation Using Large Language Models
Description: Automated cell type annotation for single-cell RNA sequencing data
using consensus predictions from multiple large language models. Integrates
with Seurat objects and provides uncertainty quantification for annotations.
Supports various LLM providers including OpenAI, Anthropic, and Google.
For details see Yang et al. (2026) <doi:10.1038/s42003-026-10420-8>.
Author: Chen Yang [aut, cre, cph]
Maintainer: Chen Yang <cafferychen777@tamu.edu>
Diff between mLLMCelltype versions 2.0.7 dated 2026-07-21 and 2.0.8 dated 2026-09-01
DESCRIPTION | 6 +- MD5 | 42 +++++++------- NEWS.md | 17 +++++ R/anthropic_processor.R | 2 R/base_api_processor.R | 2 R/deepseek_processor.R | 3 - R/gemini_processor.R | 2 R/kimi_processor.R | 2 R/prompt_templates.R | 89 ++++++++++++++++++++---------- R/response_validation_utils.R | 15 +++++ inst/doc/advanced-features.html | 4 - inst/doc/consensus-principles.html | 4 - inst/doc/contributing-guide.html | 4 - inst/doc/faq.html | 4 - inst/doc/getting-started.html | 4 - inst/doc/installation.html | 4 - inst/doc/introduction.html | 4 - inst/doc/usage-tutorial.html | 4 - inst/doc/version-history.html | 4 - man/create_reasoning_annotation_prompt.Rd | 7 ++ tests/testthat/test-annotate-reasoning.R | 34 +++++++++++ tests/testthat/test-api-timeout.R |only tests/testthat/test-provider-deepseek.R |only 23 files changed, 183 insertions(+), 74 deletions(-)
Title: Knock Errors Off Nice Guesses
Description: Miscellaneous functions and data used in psychological research and teaching. Keng
currently has four built-in datasets, and could (1) scale a vector;
(2) divide a vector into three groups,
(3) compute the cut-off values of Pearson's r with known sample size;
(4) test the significance and compute the post-hoc power for Pearson's r with known sample size;
(5) conduct a priori power analysis and plan the sample size for Pearson's r;
(6) compare lm()'s fitted outputs using R-squared, f_squared, post-hoc power,
and PRE (Proportional Reduction in Error, also called partial R-squared or
partial Eta-squared); (7) calculate PRE from partial correlation, Cohen's f, or f_squared;
(8) conduct a priori power analysis and plan the sample size for one or a set of predictors in
regression analysis; (9) conduct post-hoc power analysis for one or a set of predictors in
regression analysis with known sample size; (10) randomly pick numbers for Chinese Super Lotto
and Double Color Balls; (11) assess cour [...truncated...]
Author: Qingyao Zhang [aut, cre]
Maintainer: Qingyao Zhang <qingyaozhang@outlook.com>
Diff between Keng versions 2026.3.19 dated 2026-03-19 and 2026.9.0 dated 2026-09-01
Keng-2026.3.19/Keng/R/data.R |only Keng-2026.9.0/Keng/DESCRIPTION | 10 - Keng-2026.9.0/Keng/MD5 | 67 ++++--- Keng-2026.9.0/Keng/NEWS.md | 4 Keng-2026.9.0/Keng/R/depress.R |only Keng-2026.9.0/Keng/R/depress1.R |only Keng-2026.9.0/Keng/R/depress2.R |only Keng-2026.9.0/Keng/R/depress3.R |only Keng-2026.9.0/Keng/R/pick_dcb.R | 5 Keng-2026.9.0/Keng/R/pick_sl.R | 120 ++++++------- Keng-2026.9.0/Keng/R/well.R |only Keng-2026.9.0/Keng/R/well1.R |only Keng-2026.9.0/Keng/R/well2.R |only Keng-2026.9.0/Keng/R/well3.R |only Keng-2026.9.0/Keng/README.md | 7 Keng-2026.9.0/Keng/build/vignette.rds |binary Keng-2026.9.0/Keng/data/depress.rda |binary Keng-2026.9.0/Keng/data/depress1.rda |only Keng-2026.9.0/Keng/data/depress2.rda |only Keng-2026.9.0/Keng/data/depress3.rda |only Keng-2026.9.0/Keng/data/well.rda |only Keng-2026.9.0/Keng/data/well1.rda |only Keng-2026.9.0/Keng/data/well2.rda |only Keng-2026.9.0/Keng/data/well3.rda |only Keng-2026.9.0/Keng/inst/doc/PRE.R | 22 +- Keng-2026.9.0/Keng/inst/doc/PRE.Rmd | 22 +- Keng-2026.9.0/Keng/inst/doc/PRE.html | 116 ++++++------- Keng-2026.9.0/Keng/inst/doc/assessCOA.html | 18 +- Keng-2026.9.0/Keng/inst/doc/partialRegression.R | 8 Keng-2026.9.0/Keng/inst/doc/partialRegression.Rmd | 34 +-- Keng-2026.9.0/Keng/inst/doc/partialRegression.html | 187 ++++++++++----------- Keng-2026.9.0/Keng/inst/doc/planSampleSize.R | 8 Keng-2026.9.0/Keng/inst/doc/planSampleSize.Rmd | 8 Keng-2026.9.0/Keng/inst/doc/planSampleSize.html | 35 ++- Keng-2026.9.0/Keng/man/depress.Rd | 79 ++++++-- Keng-2026.9.0/Keng/man/depress1.Rd |only Keng-2026.9.0/Keng/man/depress2.Rd |only Keng-2026.9.0/Keng/man/depress3.Rd |only Keng-2026.9.0/Keng/man/well.Rd |only Keng-2026.9.0/Keng/man/well1.Rd |only Keng-2026.9.0/Keng/man/well2.Rd |only Keng-2026.9.0/Keng/man/well3.Rd |only Keng-2026.9.0/Keng/tests/testthat/test-power_lm.R | 5 Keng-2026.9.0/Keng/vignettes/PRE.Rmd | 22 +- Keng-2026.9.0/Keng/vignettes/partialRegression.Rmd | 34 +-- Keng-2026.9.0/Keng/vignettes/planSampleSize.Rmd | 8 46 files changed, 444 insertions(+), 375 deletions(-)
Title: Actuarial Tools for Insurance Pricing Models
Description: Provides actuarial tools and building blocks for analysing,
modelling, refining, and validating insurance rating models. Designed to
support common GLM-based pricing tasks and the translation of statistical
model output into practical tariff structures. The package supports the
construction of insurance tariff classes using a data-driven approach, based
on the methodology of Antonio and Valdez
(2012) <doi:10.1007/s10182-011-0152-7>.
Author: Martin Haringa [aut, cre]
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between insurancerating versions 0.8.1 dated 2026-07-30 and 0.8.2 dated 2026-09-01
insurancerating-0.8.1/insurancerating/man/autoplot.riskfactor_gam.Rd |only insurancerating-0.8.1/insurancerating/man/autoplot.tariff_segments.Rd |only insurancerating-0.8.1/insurancerating/man/relativities.Rd |only insurancerating-0.8.1/insurancerating/man/split_level.Rd |only insurancerating-0.8.2/insurancerating/DESCRIPTION | 14 insurancerating-0.8.2/insurancerating/MD5 | 232 insurancerating-0.8.2/insurancerating/NAMESPACE | 23 insurancerating-0.8.2/insurancerating/NEWS.md | 256 insurancerating-0.8.2/insurancerating/R/data_MTPL.R | 4 insurancerating-0.8.2/insurancerating/R/excess_loss.R | 7 insurancerating-0.8.2/insurancerating/R/gam_construct_tariff_classes.R | 686 + insurancerating-0.8.2/insurancerating/R/gam_riskfactor.R | 459 - insurancerating-0.8.2/insurancerating/R/model_add_prediction.R | 47 insurancerating-0.8.2/insurancerating/R/model_calibration.R |only insurancerating-0.8.2/insurancerating/R/model_get_data.R | 354 insurancerating-0.8.2/insurancerating/R/model_performance.R 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insurancerating-0.8.2/insurancerating/inst/doc/large-portfolios.html |only insurancerating-0.8.2/insurancerating/inst/doc/model-validation.R | 112 insurancerating-0.8.2/insurancerating/inst/doc/model-validation.Rmd | 470 - insurancerating-0.8.2/insurancerating/inst/doc/model-validation.html | 606 + insurancerating-0.8.2/insurancerating/inst/doc/pricing-workflow-building-blocks.R | 167 insurancerating-0.8.2/insurancerating/inst/doc/pricing-workflow-building-blocks.Rmd | 555 - insurancerating-0.8.2/insurancerating/inst/doc/pricing-workflow-building-blocks.html | 810 +- insurancerating-0.8.2/insurancerating/inst/doc/refinement-workflow.R | 340 insurancerating-0.8.2/insurancerating/inst/doc/refinement-workflow.Rmd | 965 +- insurancerating-0.8.2/insurancerating/inst/doc/refinement-workflow.html | 1421 ++- insurancerating-0.8.2/insurancerating/man/MTPL.Rd | 2 insurancerating-0.8.2/insurancerating/man/MTPL2.Rd | 2 insurancerating-0.8.2/insurancerating/man/active_rows_by_date.Rd | 116 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changed, 18161 insertions(+), 5813 deletions(-)
More information about insurancerating at CRAN
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Title: Probability Distributions with Certain or Uncertain Parameters
Description: Represents probability distributions with fixed or potentially
uncertain parameters, with tools to discretise, convolve, sample from and
summarise them.
Author: Sebastian Funk [aut, cre] ,
James M. Azam [aut] ,
Sam Abbott [aut]
Maintainer: Sebastian Funk <sebastian.funk@lshtm.ac.uk>
Diff between distspec versions 0.1.0 dated 2026-08-07 and 0.2.0 dated 2026-09-01
DESCRIPTION | 9 +- MD5 | 63 +++++++++-------- NAMESPACE | 8 ++ NEWS.md | 30 ++++++++ R/accessors.R | 1 R/as_dist_spec.R |only R/check.R | 16 ++-- R/constructors.R | 10 ++ R/discretise.R | 130 ++++++++++++++++++++++++++---------- R/dist_spec.R | 20 ++--- R/fixed.R | 24 ++++++ R/nonparametric.R | 6 + README.md | 11 +-- inst/design.md | 2 inst/doc/distspec.Rmd | 2 inst/doc/distspec.html | 2 man/NonParametric.Rd | 7 + man/as_dist_spec.Rd |only man/bound_dist.Rd | 20 +++-- man/discrete_pmf.Rd | 6 - man/discretise.Rd | 4 - man/distspec-package.Rd | 3 man/figures/logo.png |only man/figures/logo.svg |only man/has_uncertainty.Rd | 1 man/new_dist_spec.Rd | 20 ++++- man/plot.dist_spec.Rd | 2 man/validate_dist_spec.Rd | 2 tests/testthat/test-as_dist_spec.R |only tests/testthat/test-deprecation.R | 36 ++++++++- tests/testthat/test-dist_spec.R | 24 +++--- tests/testthat/test-fixed.R | 16 ++++ tests/testthat/test-nonparametric.R | 10 +- tests/testthat/test-validate.R | 8 +- vignettes/distspec.Rmd | 2 35 files changed, 350 insertions(+), 145 deletions(-)
Title: Extra Functionality for the 'xpose' Package
Description: Adding some at-present missing functionality, or functions
unlikely to be added to the base 'xpose' package. This includes some
diagnostic plots that have been missing in translation from 'xpose4',
but also some useful features that truly extend the capabilities of what
can be done with 'xpose'. These extensions include the concept of a set of
'xpose' objects, and diagnostics for likelihood-based models.
Author: John Prybylski [aut, cre, cph]
Maintainer: John Prybylski <jprybylski@gmail.com>
Diff between xpose.xtras versions 0.2.0 dated 2026-07-26 and 0.2.2 dated 2026-09-01
DESCRIPTION | 22 MD5 | 106 +-- NAMESPACE | 15 NEWS.md | 74 ++ R/bbr.R | 14 R/categorical.R | 2 R/colinearity.R | 13 R/covariates.R | 954 +++++++++++++++++++++++------- R/fixes.R | 239 ++++++- R/nlmixr2.R | 35 - R/nlmixr_examples.R | 128 ++-- R/utils.R | 380 +++++++++++ R/xp_xtras.R | 115 +++ R/xtra_pars.R | 27 R/xtra_plots.R | 119 +++ R/zzz.R | 105 ++- README.md | 12 data/pheno_base.rda |binary data/pheno_final.rda |binary data/pheno_saem.rda |binary data/pheno_set.rda |binary data/pkpd_m3.rda |binary data/vismo_dtmm.rda |binary data/vismo_pomod.rda |binary data/xpdb_set.rda |binary data/xpdb_x.rda |binary inst/WORDLIST | 4 inst/doc/a01-the-xp_xtra-object.html | 8 inst/doc/a02-xpose-sets.html | 49 - inst/doc/a03-useful_plots.html | 38 - inst/doc/a04-plot-output-and-options.html | 32 - man/derive_shk.Rd |only man/eta_vs_catcov.Rd | 23 man/eta_vs_contcov.Rd | 23 man/figures/README-m3_roc-1.png |binary man/get_cov_matrix.Rd | 13 man/grid_plots.Rd | 5 man/irep.Rd | 10 man/levelers.Rd | 19 man/nlmixr2_as_xtra.Rd | 10 man/normalize_etas.Rd |only man/patch_condn.Rd | 7 man/print.xpose_data.Rd |only man/recalc_shk.Rd |only man/shk_grid_plots.Rd |only man/shk_vs_catcov.Rd |only man/shk_vs_contcov.Rd |only man/xp_from_bbr.Rd | 11 man/xtras_data.Rd |only tests/testthat/helper-bbr.R | 13 tests/testthat/helper-nlmixr2_examples.R | 32 - tests/testthat/test-bbr.R | 22 tests/testthat/test-colinearity.R | 15 tests/testthat/test-covariates.R | 322 +++++++++- tests/testthat/test-fixes.R | 172 ++++- tests/testthat/test-utils.R | 184 +++++ tests/testthat/test-xp_xtras.R | 80 ++ tests/testthat/test-zzz.R | 124 +++ 58 files changed, 3019 insertions(+), 557 deletions(-)
Title: Text Extraction, Rendering and Converting of PDF Documents
Description: Utilities based on 'libpoppler' <https://poppler.freedesktop.org> for extracting
text, fonts, attachments and metadata from a PDF file. Also supports high quality rendering
of PDF documents into PNG, JPEG, TIFF format, or into raw bitmap vectors for further
processing in R.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between pdftools versions 3.9.0 dated 2026-05-14 and 3.9.1 dated 2026-09-01
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS | 3 +++ tools/winlibs.R | 9 +++++---- 4 files changed, 14 insertions(+), 10 deletions(-)
Title: A Flexible Class for Messy Dates
Description: Contains a set of tools for constructing and coercing
into and from the "mdate" class.
This date class implements ISO 8601-2:2019(E) and
allows regular dates and times to be annotated
to express unspecified date or time components,
approximate or uncertain components,
ranges, and sets of dates.
The package therefore retains, represents, and reasons about data and time imprecision,
resolving to a single data/time only on demand.
This is useful for describing and analysing temporal information,
whether historical or recent, where date or time precision may vary.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Nathan Werth [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between messydates versions 1.1.0 dated 2026-07-27 and 1.1.1 dated 2026-09-01
DESCRIPTION | 8 - MD5 | 21 ++-- NAMESPACE | 44 +++++---- NEWS.md | 23 ++++ R/coerce_to_messydate.R | 175 +++++++++++++++++++++++++++++++++++-- R/validate_input.R | 14 +- README.md | 15 ++- man/coerce_to.Rd | 19 ++++ man/figures/messydates_hexlogo.png |binary man/figures/messydates_v2c.png |only tests/testthat/test-coerce_from.R | 8 + tests/testthat/test-coerce_to.R | 77 +++++++++++++++- 12 files changed, 348 insertions(+), 56 deletions(-)
Title: Tree-Style Console Logger for Nested Processes
Description: Render nested process execution as a live, colored tree in the console, with tree connectors, status glyphs, and elapsed time per step. Nesting depth is tracked via frame exit handlers so it never desynchronizes, even when a step errors. Builds on the 'cli' package for console rendering.
Author: Ivan Sortino [aut, cre, cph]
Maintainer: Ivan Sortino <ivan.sortino97@gmail.com>
Diff between logtree versions 0.1.0 dated 2026-08-06 and 0.2.0 dated 2026-09-01
DESCRIPTION | 12 MD5 | 111 +- NAMESPACE | 7 NEWS.md | 171 +++ R/appenders.R | 316 +++++-- R/glyphs.R | 155 +++ R/leaves.R | 103 ++ R/logger-integration.R | 56 - R/run.R | 170 +++ R/sinks.R |only R/state.R | 139 +++ R/step.R | 629 +++++++++++++ R/summary.R | 176 +++ R/theme.R | 443 +++++++++ R/trace.R |only R/zzz.R | 12 README.md | 364 +------- build/vignette.rds |binary inst/doc/logtree.R | 255 ++++- inst/doc/logtree.Rmd | 892 ++++++++++++++++--- inst/doc/logtree.html | 1399 +++++++++++++++++++++++-------- man/figures/README-tree-color.svg | 120 +- man/figures/logo.png |binary man/layout_logtree.Rd | 19 man/logtree_logger.Rd | 7 man/logtree_mute.Rd |only man/logtree_reset.Rd | 5 man/logtree_sink.Rd |only man/logtree_sink_file.Rd | 62 + man/logtree_sink_memory.Rd |only man/logtree_sink_memory_events.Rd |only man/logtree_sink_remove.Rd |only man/logtree_sinks.Rd |only man/logtree_summary.Rd | 59 + man/logtree_theme.Rd | 251 +++++ man/logtree_threshold.Rd | 16 man/with_logging.Rd | 37 tests/testthat/_snaps/close-text.md |only tests/testthat/_snaps/connector-gap.md |only tests/testthat/_snaps/elapsed-slot.md |only tests/testthat/_snaps/glyph-gap.md |only tests/testthat/_snaps/preset-ci.md |only tests/testthat/_snaps/preset-minimal.md |only tests/testthat/_snaps/wrap.md |only tests/testthat/helper-clock.R | 16 tests/testthat/helper-mute.R |only tests/testthat/helper-sinks.R | 16 tests/testthat/helper-theme.R | 5 tests/testthat/helper-trace.R |only tests/testthat/test-appenders.R | 3 tests/testthat/test-close-text.R |only tests/testthat/test-connector-gap.R |only tests/testthat/test-elapsed-slot.R |only tests/testthat/test-glyph-gap.R |only tests/testthat/test-logger-integration.R | 12 tests/testthat/test-mute.R |only tests/testthat/test-onload.R | 8 tests/testthat/test-preset-ci.R |only tests/testthat/test-preset-minimal.R |only tests/testthat/test-sink-memory.R |only tests/testthat/test-sink-threshold.R |only tests/testthat/test-sinks.R |only tests/testthat/test-summary.R | 202 ++++ tests/testthat/test-theme.R | 136 +++ tests/testthat/test-timestamp.R |only tests/testthat/test-trace.R |only tests/testthat/test-warnings.R |only tests/testthat/test-wrap.R |only vignettes/concept-anatomy.svg |only vignettes/concept-elevation.svg |only vignettes/concept-frames.svg |only vignettes/concept-grouping.svg |only vignettes/logtree.Rmd | 892 ++++++++++++++++--- vignettes/routed-conditions.svg |only vignettes/timestamp-silver.svg |only 75 files changed, 5996 insertions(+), 1280 deletions(-)
Title: Track User-Defined Environment Names
Description: Set of functions to keep track and find objects in user-defined environments
by identifying environments by name --which cannot be retrieved with the built-in function environmentName().
The package also provides functionality to obtain simplified information about function calling chains
and to get an object's memory address.
Author: Daniel Mastropietro [aut, cre]
Maintainer: Daniel Mastropietro <mastropi@uwalumni.com>
Diff between envnames versions 0.4.1 dated 2020-12-08 and 0.4.2 dated 2026-09-01
DESCRIPTION | 19 MD5 | 37 - R/get_obj_address.r | 45 - R/get_obj_name.r | 60 +- R/obj_find.r | 2 build/vignette.rds |binary inst/doc/envnames.Rmd | 831 ++++++++++++++++++++++++---------- inst/doc/envnames.pdf |binary man/envnames-package.Rd | 19 man/get_obj_name.Rd | 18 man/testenv.Rd | 3 tests/testthat/_problems |only tests/testthat/test-get_env_names.r | 50 -- tests/testthat/test-get_obj_address.r | 7 tests/testthat/test-get_obj_name.r | 37 - tests/testthat/test-obj_find.r | 59 -- vignettes/envnames.Rmd | 831 ++++++++++++++++++++++++---------- 17 files changed, 1357 insertions(+), 661 deletions(-)
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages.
These include e.g. measures like r-squared, intraclass correlation
coefficient (Nakagawa, Johnson & Schielzeth (2017)
<doi:10.1098/rsif.2017.0213>), root mean squared error or functions to
check models for overdispersion, singularity or zero-inflation and
more. Functions apply to a large variety of regression models,
including generalized linear models, mixed effects models and Bayesian
models. References: Lüdecke et al. (2021) <doi:10.21105/joss.03139>.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb] ,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Remi Theriault [aut, ctb] ,
Vincent Arel-Bundock [ctb] ,
Martin J [...truncated...]
Maintainer: Daniel Luedecke <officialeasystats@gmail.com>
Diff between performance versions 0.18.0 dated 2026-08-28 and 0.18.1 dated 2026-09-01
DESCRIPTION | 6 ++--- MD5 | 12 +++++----- NEWS.md | 10 ++++++++ R/binned_residuals.R | 32 ++++++++++++++++++++-------- man/binned_residuals.Rd | 9 ++++--- tests/testthat/test-binned_residuals.R | 15 +++++++++++++ tests/testthat/test-check_group_variation.R | 32 ++++++++++++++-------------- 7 files changed, 79 insertions(+), 37 deletions(-)
Title: Linear and Nonlinear Mixed Effects Models
Description: Fit and compare Gaussian linear and nonlinear mixed-effects models.
Author: Jose Pinheiro [aut] ,
Douglas Bates [aut] ,
Saikat DebRoy [ctb] ,
Deepayan Sarkar [ctb] ,
EISPACK authors [ctb] ,
Siem Heisterkamp [ctb] ,
Bert Van Willigen [ctb] ,
Johannes Ranke [ctb] ),
R Core Team [aut, cre]
Maintainer: R Core Team <R-core@R-project.org>
Diff between nlme versions 3.1-170 dated 2026-07-15 and 3.1-171 dated 2026-09-01
ChangeLog | 5 ++ DESCRIPTION | 8 ++-- MD5 | 92 ++++++++++++++++++++++++------------------------- build/partial.rdb |binary data/Alfalfa.rda |binary data/Assay.rda |binary data/BodyWeight.rda |binary data/Cefamandole.rda |binary data/Dialyzer.rda |binary data/Earthquake.rda |binary data/Fatigue.rda |binary data/Gasoline.rda |binary data/Glucose.rda |binary data/Glucose2.rda |binary data/Gun.rda |binary data/IGF.rda |binary data/Machines.rda |binary data/MathAchSchool.rda |binary data/MathAchieve.rda |binary data/Meat.rda |binary data/Milk.rda |binary data/Muscle.rda |binary data/Nitrendipene.rda |binary data/Oats.rda |binary data/Orthodont.rda |binary data/Ovary.rda |binary data/Oxboys.rda |binary data/Oxide.rda |binary data/PBG.rda |binary data/Phenobarb.rda |binary data/Pixel.rda |binary data/Quinidine.rda |binary data/Rail.rda |binary data/RatPupWeight.rda |binary data/Relaxin.rda |binary data/Remifentanil.rda |binary data/Soybean.rda |binary data/Spruce.rda |binary data/Tetracycline1.rda |binary data/Tetracycline2.rda |binary data/Wafer.rda |binary data/Wheat.rda |binary data/Wheat2.rda |binary data/bdf.rda |binary data/ergoStool.rda |binary tests/lme.R | 3 + tests/lme.Rout.save | 11 +++-- 47 files changed, 63 insertions(+), 56 deletions(-)
Title: Create Layout Plots of Biological Culture Plates and Microplates
Description: Enables users to create simple plots of biological culture plates as well as microplates. Both continuous and discrete values can be plotted onto the plate layout.
Author: Jan-Philipp Quast [aut, cre]
Maintainer: Jan-Philipp Quast <jpquast.software@gmail.com>
Diff between ggplate versions 0.3.1 dated 2026-05-11 and 0.4.0 dated 2026-09-01
DESCRIPTION | 10 MD5 | 101 +- NAMESPACE | 1 NEWS.md | 13 R/data.R | 50 + R/plate_plot.R | 188 ++++- README.md | 131 +++ data/border_colours.rda |only data/data_continuous_12.rda |binary data/data_continuous_1536.rda |binary data/data_continuous_1536_Aa.rda |binary data/data_continuous_24.rda |binary data/data_continuous_384.rda |binary data/data_continuous_48.rda |binary data/data_continuous_48_incomplete.rda |binary data/data_continuous_6.rda |binary data/data_continuous_96.rda |binary data/data_discrete_24.rda |binary data/data_discrete_6.rda |binary data/data_discrete_96.rda |binary man/border_colours.Rd |only man/data_continuous_12.Rd | 3 man/data_continuous_1536.Rd | 3 man/data_continuous_1536_Aa.Rd | 3 man/data_continuous_24.Rd | 3 man/data_continuous_384.Rd | 3 man/data_continuous_48.Rd | 3 man/data_continuous_48_incomplete.Rd | 4 man/data_continuous_6.Rd | 3 man/data_continuous_96.Rd | 3 man/data_discrete_24.Rd | 3 man/data_discrete_6.Rd | 3 man/data_discrete_96.Rd | 6 man/figures/README-24_well_plate_legend_n_row-1.png |binary man/figures/README-6_well_plot_new_colours-1.png |binary man/figures/README-6_well_plot_new_colours_no_legend-1.png |binary man/figures/README-discrete_96_well_plate-1.png |binary man/figures/README-discrete_96_well_plate_label-1.png |binary man/figures/README-resize_plot-1.png |binary man/figures/README-return_device_size-1.png |binary man/figures/README-standard_plot-1.png |binary man/figures/README-standard_plot_384_well_new_gradient-1.png |binary man/figures/README-standard_plot_384_well_new_limits-1.png |binary man/figures/README-standard_plot_384_well_new_limits_outlier-1.png |binary man/figures/README-standard_plot_48_empty_wells-1.png |binary man/figures/README-standard_plot_48_empty_wells_keep_na-1.png |binary man/figures/README-standard_plot_6_well-1.png |binary man/figures/README-standard_plot_labels-1.png |binary man/figures/README-standard_plot_labels_wells-1.png |binary man/figures/README-well_borders-1.png |only man/figures/README-well_borders_colour-1.png |only man/figures/README-well_borders_only-1.png |only man/plate_plot.Rd | 36 - tests/testthat/test-my-test.R | 347 ++++++++++ 54 files changed, 788 insertions(+), 129 deletions(-)
Title: Calculating Likelihoods by Pedigree Paring
Description: A fast and general implementation of the Elston-Stewart algorithm
that can calculate the likelihoods of large and complex pedigrees.
References for the Elston-Stewart algorithm are
Elston & Stewart (1971) <doi:10.1159/000152448>,
Lange & Elston (1975) <doi:10.1159/000152714> and
Cannings et al. (1978) <doi:10.2307/1426718>.
Author: James Dowty [aut, cre],
Kevin Wong [aut]
Maintainer: James Dowty <jgdowty@gmail.com>
Diff between clipp versions 1.1.1 dated 2022-07-12 and 1.2.0 dated 2026-09-01
DESCRIPTION | 8 MD5 | 18 - R/pedigree_loglikelihood.R | 2 R/pedigree_loglikelihood_g.R | 87 +++------ build/vignette.rds |binary inst/doc/using_clipp.R | 94 ++++----- inst/doc/using_clipp.Rmd | 2 inst/doc/using_clipp.html | 405 +++++++++++++++++++++---------------------- man/clipp-package.Rd | 1 vignettes/using_clipp.Rmd | 2 10 files changed, 305 insertions(+), 314 deletions(-)
Title: A S3 Class for Vectors of 64bit Integers
Description: Package 'bit64' provides serializable S3 atomic 64bit (signed) integers.
These are useful for handling database keys and exact counting in +-2^63.
WARNING: do not use them as replacement for 32bit integers, integer64 are not
supported for subscripting by R-core and they have different semantics when
combined with double, e.g. integer64 + double => integer64.
Class integer64 can be used in vectors, matrices, arrays and data.frames.
Methods are available for coercion from and to logicals, integers, doubles,
characters and factors as well as many elementwise and summary functions.
Many fast algorithmic operations such as 'match' and 'order' support inter-
active data exploration and manipulation and optionally leverage caching.
Author: Michael Chirico [aut, cre],
Jens Oehlschlaegel [aut],
Leonardo Silvestri [ctb],
Ofek Shilon [ctb],
Christian Ullerich [ctb]
Maintainer: Michael Chirico <michaelchirico4@gmail.com>
Diff between bit64 versions 4.8.4 dated 2026-08-20 and 4.8.6 dated 2026-09-01
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 6 ++++++ src/integer64.h | 6 +++++- 4 files changed, 17 insertions(+), 7 deletions(-)
Title: 'React Router' for 'shiny' Apps and 'Quarto'
Description: Provides a wrapper around the 'react-router-dom' 'React' library for use in
'Shiny' applications and 'Quarto' documents. Enables client-side routing with hash,
memory, and browser history strategies, nested routes, dynamic segments, data loaders,
actions, and navigation hooks.
Author: Felix Luginbuhl [aut, cre, cph] ,
Andryas Waurzenczak [ctb]
Maintainer: Felix Luginbuhl <felix.luginbuhl@protonmail.ch>
Diff between reactRouter versions 0.2.0 dated 2026-05-10 and 0.2.1 dated 2026-09-01
DESCRIPTION | 6 +-- MD5 | 10 ++--- NEWS.md | 11 ++++++ README.md | 2 - inst/reactRouter/react-router-dom.js | 4 +- inst/reactRouter/react-router-dom.js.LICENSE.txt | 42 +++++++++++------------ 6 files changed, 43 insertions(+), 32 deletions(-)
Title: Adding Progress Bar to '*apply' Functions
Description: A lightweight package that adds
progress bar to vectorized R functions
('*apply'). The implementation can easily be added
to functions where showing the progress is
useful (e.g. bootstrap). The type and style of the
progress bar (with percentages or remaining time)
can be set through options.
Supports several parallel processing backends including mirai and future.
Author: Peter Solymos [aut, cre] ,
Zygmunt Zawadzki [aut],
Henrik Bengtsson [ctb],
R Core Team [cph, ctb]
Maintainer: Peter Solymos <psolymos@gmail.com>
Diff between pbapply versions 1.7-4 dated 2025-07-20 and 1.7-5 dated 2026-09-01
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 4 ++++ inst/WORDLIST | 1 - man/pbapply.Rd | 4 ++-- 5 files changed, 14 insertions(+), 11 deletions(-)
Title: Dense Neural Networks for Tabular Regression, Classification and
Survival
Description: Dense feed-forward neural networks (multilayer perceptrons)
for tabular regression, classification and survival analysis, with a
formula or x/y interface. Supports residual and gated hidden blocks,
batch normalization, per-layer dropout, learned cross-feature
interactions, exponential moving-average weights, learning-rate
schedules, internal bootstrap ensembles and Adam optimization. Survival
outcomes are trained with either a batch-wise Breslow-tie Cox partial
likelihood or a discrete-time inverse-probability-of-censoring-weighted
integrated Brier score. The numerical kernels are implemented natively
in C++ via 'RcppArmadillo', with no external deep learning framework
dependency (no 'torch' / 'libtorch'). Companion helpers provide k-fold
cross-validation, hyperparameter search and task-aware evaluation
metrics.
Author: Imad El Badisy [aut, cre]
Maintainer: Imad El Badisy <elbadisyimad@gmail.com>
Diff between densemlp versions 0.6.0 dated 2026-08-21 and 0.7.1 dated 2026-09-01
densemlp-0.6.0/densemlp/R/logging.R |only densemlp-0.6.0/densemlp/R/model_torch.R |only densemlp-0.6.0/densemlp/R/print.R |only densemlp-0.6.0/densemlp/R/training.R |only densemlp-0.6.0/densemlp/R/zzz.R |only densemlp-0.6.0/densemlp/inst/doc/getting-started.R |only densemlp-0.6.0/densemlp/inst/doc/getting-started.Rmd |only densemlp-0.6.0/densemlp/inst/doc/getting-started.pdf |only densemlp-0.6.0/densemlp/man/autoplot.densemlp_fit.Rd |only densemlp-0.6.0/densemlp/man/predict.densemlp_fit.Rd |only densemlp-0.6.0/densemlp/man/print.densemlp_fit.Rd |only densemlp-0.6.0/densemlp/tests/testthat/helper-torch.R |only densemlp-0.6.0/densemlp/tests/testthat/test-training-logging.R |only densemlp-0.6.0/densemlp/vignettes/getting-started.Rmd |only densemlp-0.7.1/densemlp/DESCRIPTION | 38 densemlp-0.7.1/densemlp/MD5 | 82 - densemlp-0.7.1/densemlp/NAMESPACE | 17 densemlp-0.7.1/densemlp/NEWS.md | 73 + densemlp-0.7.1/densemlp/R/RcppExports.R |only densemlp-0.7.1/densemlp/R/cv.R | 149 -- densemlp-0.7.1/densemlp/R/densemlp-package.R | 15 densemlp-0.7.1/densemlp/R/densemlp.R | 579 +++++++--- densemlp-0.7.1/densemlp/R/importance.R | 124 +- densemlp-0.7.1/densemlp/R/metrics.R | 142 +- densemlp-0.7.1/densemlp/R/plots.R | 52 densemlp-0.7.1/densemlp/R/predict.R | 204 ++- densemlp-0.7.1/densemlp/R/preprocess.R | 253 +--- densemlp-0.7.1/densemlp/R/tuning.R | 335 +---- densemlp-0.7.1/densemlp/R/utils.R | 168 -- densemlp-0.7.1/densemlp/README.md | 303 +---- densemlp-0.7.1/densemlp/build/vignette.rds |binary densemlp-0.7.1/densemlp/inst/WORDLIST |only densemlp-0.7.1/densemlp/inst/doc/densemlp-intro.R |only densemlp-0.7.1/densemlp/inst/doc/densemlp-intro.Rmd |only densemlp-0.7.1/densemlp/inst/doc/densemlp-intro.html |only densemlp-0.7.1/densemlp/man/cv_densemlp.Rd | 52 densemlp-0.7.1/densemlp/man/densemlp-package.Rd | 14 densemlp-0.7.1/densemlp/man/densemlp.Rd | 244 +++- densemlp-0.7.1/densemlp/man/densemlp_integrated_brier_score.Rd |only densemlp-0.7.1/densemlp/man/densemlp_metrics.Rd | 24 densemlp-0.7.1/densemlp/man/perm_importance.Rd | 41 densemlp-0.7.1/densemlp/man/plot.densemlp.Rd |only densemlp-0.7.1/densemlp/man/plot.densemlp_importance.Rd | 8 densemlp-0.7.1/densemlp/man/plot_history.Rd | 20 densemlp-0.7.1/densemlp/man/predict.densemlp.Rd |only densemlp-0.7.1/densemlp/man/tune_densemlp.Rd | 76 - densemlp-0.7.1/densemlp/src |only densemlp-0.7.1/densemlp/tests/testthat/test-cv.R | 70 - densemlp-0.7.1/densemlp/tests/testthat/test-densemlp.R | 350 ++++-- densemlp-0.7.1/densemlp/tests/testthat/test-features.R |only densemlp-0.7.1/densemlp/tests/testthat/test-metrics.R |only densemlp-0.7.1/densemlp/tests/testthat/test-plot-ncores.R |only densemlp-0.7.1/densemlp/tests/testthat/test-tuning.R | 54 densemlp-0.7.1/densemlp/vignettes/densemlp-intro.Rmd |only 54 files changed, 1854 insertions(+), 1633 deletions(-)
More information about BsplineQuantRegGui at CRAN
Permanent link
Title: An 'Shiny' App for Exploring scRNA-seq Data Processed in
'Seurat'
Description: A simple, one-command package which runs an interactive dashboard capable of common visualizations for single cell RNA-seq. 'SeuratExplorer' requires a processed 'Seurat' object, which is saved as 'rds' or 'qs2' file.
Author: Yongchao Zhang [aut, cre]
Maintainer: Yongchao Zhang <zhangyongchao@nibs.ac.cn>
Diff between SeuratExplorer versions 0.1.6 dated 2026-06-17 and 0.1.8 dated 2026-09-01
DESCRIPTION | 6 MD5 | 15 NAMESPACE | 3 R/functions.R | 76 +++ R/launch.R | 5 R/server.R | 841 +++++++++++++++++++++++++++++++++++++++----- R/ui.R | 440 +++++++++++++++-------- man/launchSeuratExplorer.Rd | 2 man/param_group_collapse.Rd |only 9 files changed, 1154 insertions(+), 234 deletions(-)
More information about SeuratExplorer at CRAN
Permanent link
Title: Poisson Fixed Effects Robust
Description: Computation of robust standard errors of Poisson fixed effects
models, following Wooldridge (1999).
Author: Evan Wright [aut, cre]
Maintainer: Evan Wright <enwright@umich.edu>
Diff between poisFErobust versions 2.0.0 dated 2020-02-17 and 2.0.1 dated 2026-09-01
DESCRIPTION | 9 ++++----- LICENSE | 2 +- MD5 | 10 +++++----- NEWS.md | 4 ++++ build/partial.rdb |binary man/pois.fe.robust.Rd | 29 +++++++++++------------------ 6 files changed, 25 insertions(+), 29 deletions(-)
Title: Contrast and Separation Metrics for Phonological Categories
Description: Computes and compares multiple measures of separation and overlap
between phonological categories (for example vowels or consonants) in
arbitrary multi-dimensional acoustic spaces such as formant values,
mel-frequency cepstral coefficients (MFCCs), duration, or learned
embeddings. The main entry point, phontrast(), reports several contrast
metrics in one call -- Jensen-Shannon divergence and distance (Lin, 1991)
<doi:10.1109/18.61115>, the Pillai-Bartlett trace, Bhattacharyya distance
and affinity, Mahalanobis distance, and proportional overlap -- globally or
by group on a common separation-oriented scale, with bootstrap confidence
intervals. Also provides utilities for preparing estimates for downstream
modelling such as generalized additive models and mixed-effects models.
Formerly released as 'phonJSD'.
Author: Grant M. Berry [aut, cre]
Maintainer: Grant M. Berry <berry.grant@gmail.com>
Diff between phontrast versions 2.4.0 dated 2026-08-21 and 2.4.1 dated 2026-09-01
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 16 ++++++++++++++++ R/pillai_bhatt.R | 20 ++++++++++++++------ tests/testthat/test-pillai-standardized.R | 17 +++++++++++++++++ 5 files changed, 54 insertions(+), 13 deletions(-)
Title: AAPOR Survey Outcome Rates
Description: Standardized survey outcome rate functions, including the response rate, contact rate, cooperation rate, and refusal rate. These outcome rates allow survey researchers to measure the quality of survey data using definitions published by the American Association for Public Opinion Research (AAPOR). For details on these standards, see AAPOR (2023) <https://aapor.org/wp-content/uploads/2024/03/Standards-Definitions-10th-edition.pdf>.
Author: Rafael Pilliard Hellwig [aut, cre] ,
Carl Ganz [rev],
Neal Richardson [rev]
Maintainer: Rafael Pilliard Hellwig <rafael.taph@gmail.com>
Diff between outcomerate versions 1.0.1 dated 2018-10-06 and 1.1.0 dated 2026-09-01
DESCRIPTION | 18 MD5 | 56 +-- NEWS.md | 25 + R/asserters.R | 144 ++++++- R/datasets.R | 37 +- R/eligibility_rate.R | 66 ++- R/helpers.R | 33 + R/outcomerate.R | 188 +++++++--- R/sysdata.rda |binary README.md | 134 ++++--- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 18 inst/REFERENCES.bib | 18 inst/WORDLIST | 28 - inst/doc/intro-to-outcomerate.R | 62 ++- inst/doc/intro-to-outcomerate.Rmd | 67 ++- inst/doc/intro-to-outcomerate.html | 532 +++++++++++++++++++---------- man/eligibility_rate.Rd | 46 +- man/fmat.Rd | 27 - man/middleearth.Rd | 9 man/outcomerate.Rd | 137 +++++-- tests/testthat/_snaps |only tests/testthat/spelling.R | 4 tests/testthat/test-aggregate-boundaries.R |only tests/testthat/test-e.R |only tests/testthat/test-helpers.R | 38 +- tests/testthat/test-params.R | 44 +- tests/testthat/test-rate.R | 15 tests/testthat/test-ur.R |only vignettes/intro-to-outcomerate.Rmd | 67 ++- 31 files changed, 1236 insertions(+), 577 deletions(-)
Title: Data from the US National Health and Nutrition Examination Study
Description: Body Shape and related measurements from the US National Health
and Nutrition Examination Survey (NHANES, 1999-2004). See
<https://www.cdc.gov/nchs/nhanes/index.html> for details.
Author: Randall Pruim [aut, cre]
Maintainer: Randall Pruim <rpruim@gmail.com>
Diff between NHANES versions 2.1.0 dated 2015-07-02 and 2.1.4 dated 2026-09-01
NHANES-2.1.0/NHANES/data/datalist |only NHANES-2.1.4/NHANES/DESCRIPTION | 19 +- NHANES-2.1.4/NHANES/MD5 | 15 - NHANES-2.1.4/NHANES/NAMESPACE | 3 NHANES-2.1.4/NHANES/R/datasets.R | 62 +++----- NHANES-2.1.4/NHANES/README.md | 3 NHANES-2.1.4/NHANES/data/NHANES.rda |binary NHANES-2.1.4/NHANES/data/NHANESraw.rda |binary NHANES-2.1.4/NHANES/man/NHANES.Rd | 253 ++++++++++++++++----------------- 9 files changed, 177 insertions(+), 178 deletions(-)
Title: Analyzing Wildlife Data with Detection Error
Description: Models for analyzing site occupancy and count data models
with detection error, including
single-visit based models (Lele et al. 2012 <doi:10.1093/jpe/rtr042>,
Moreno et al. 2010 <doi:10.1890/09-1073.1>,
Solymos et al. 2012 <doi:10.1002/env.1149>,
Denes et al. 2016 <doi:10.1111/1365-2664.12818>),
conditional distance sampling and time-removal models (QPAD)
(Solymos et al. 2013 <doi:10.1111/2041-210X.12106>,
Solymos et al. 2018 <doi:10.1650/CONDOR-18-32.1>),
and single bin QPAD (SQPAD) models
(Lele & Solymos 2025 <doi:10.1093/ornithapp/duaf078>).
Package development was supported by the
Alberta Biodiversity Monitoring Institute
and the Boreal Avian Modelling Project.
Author: Peter Solymos [aut, cre] ,
Monica Moreno [aut],
Subhash R. Lele [aut],
Steven L. Van Wilgenburg [ctb]
Maintainer: Peter Solymos <psolymos@gmail.com>
Diff between detect versions 0.5-1 dated 2026-01-08 and 0.5-2 dated 2026-09-01
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 1 + R/coef.svabu.R | 48 ++++++++++++++++++++++++++++-------------------- R/coef.svocc.R | 30 +++++++++++++++++------------- R/sqpad.R | 28 ++++++++++++++++++++++++++-- inst/WORDLIST | 3 +++ man/sqpad.Rd | 27 +++++++++++++++++++++------ 8 files changed, 107 insertions(+), 52 deletions(-)
Title: Highly Customizable, Parallelized Simulations of Frequentist
Confidence Clinical Trials
Description: Simulate one or many frequentist confidence clinical trials
based on a specified set of parameters. From a two-arm, single-stage
trial to a perpetually run Adaptive Platform Trial, this package
offers vast flexibility to customize your trial and observe
operational characteristics over thousands of instances.
Author: Freda Werdiger [aut, cre]
Maintainer: Freda Werdiger <freda.werdiger@unimelb.edu.au>
This is a re-admission after prior archival of version 0.1.0 dated 2025-10-25
Diff between confidenceSim versions 0.1.0 dated 2025-10-25 and 0.1.1 dated 2026-09-01
DESCRIPTION | 10 ++++---- MD5 | 15 ++++++------- NEWS.md |only R/trialDesignFns.R | 8 +++--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/running-simulations-in-parallel.html | 30 +++++++++++++------------- man/getConfidenceFromBounds.Rd | 2 - man/getGSDesign.Rd | 6 ++--- 9 files changed, 36 insertions(+), 35 deletions(-)
Title: Make, Update, and Query Binary Causal Models
Description: Users can declare causal models over binary nodes, update beliefs about causal types given data, and calculate arbitrary queries. Updating is implemented in 'stan'. See Tietz, Medina, Syunyaev and Humphreys (2026) <doi:10.18637/jss.v117.i01>, Humphreys and Jacobs (2023) <doi:10.1017/9781316718636> and Pearl (2009) <doi:10.1017/CBO9780511803161>.
Author: Clara Bicalho [ctb],
Jasper Cooper [ctb],
Macartan Humphreys [aut] ,
Till Tietz [aut, cre] ,
Alan Jacobs [aut],
Merlin Heidemanns [ctb],
Lily Medina [aut] ,
Julio Solis [ctb],
Georgiy Syunyaev [aut] ,
Moritz Marbach [ctb]
Maintainer: Till Tietz <ttietz2014@gmail.com>
Diff between CausalQueries versions 1.4.5 dated 2026-01-29 and 1.4.6 dated 2026-09-01
DESCRIPTION | 10 +++---- MD5 | 42 +++++++++++++++++---------------- NEWS.md | 7 ++++- R/CausalQueries-package.R | 6 ++++ R/make_models.R | 5 +++ R/query_model.R | 5 +++ R/realise_outcomes.R | 4 ++- R/update_model.R | 8 +++++- build/partial.rdb |only inst/CITATION |only man/CausalQueries-package.Rd | 7 +++++ man/data_helpers.Rd | 13 +++------- man/get_all_data_types.Rd | 6 ++-- man/make_data_single.Rd | 6 ++-- man/make_model.Rd | 6 ++++ man/observe_data.Rd | 6 ++-- man/parents_to_int.Rd | 5 --- man/query_model.Rd | 6 ++++ man/set_confound.Rd | 6 ++-- man/set_prior_distribution.Rd | 6 ++-- man/set_restrictions.Rd | 6 ++-- man/update_model.Rd | 6 ++++ tests/testthat/test_update_model.R | 47 +++++++++++++++++++++++++++++++++++++ 23 files changed, 154 insertions(+), 59 deletions(-)