Title: Fast Compact Multilayer Perceptrons
Description: A small multilayer perceptron implementation for
'R'. It supports regression and classification, multiple hidden layers,
mini-batch training, Adam, SGD, momentum, Nesterov, RPROP, GRPROP and
L-BFGS optimizers, dropout, L2 regularization, early stopping, convergence
thresholds, gradient clipping, sample and class weights, callback hooks,
target scaling and robust Huber loss for regression, 'Rcpp' forward-pass
kernels, formula interfaces, model evaluation with balanced classification
metrics, cross-validation, compact tuning, permutation importance, model
persistence helpers, and 'S3' prediction methods. Methods follow
Rumelhart, Hinton and Williams (1986) <doi:10.1038/323533a0>, with
optimizers including Riedmiller and Braun (1993)
<doi:10.1109/ICNN.1993.298623>, Nocedal (1980)
<doi:10.1090/S0025-5718-1980-0572855-7>, and Kingma and Ba (2014)
<doi:10.48550/arXiv.1412.6980>.
Author: Feng Ji [aut, cre]
Maintainer: Feng Ji <f.ji@utoronto.ca>
Diff between neuralnetwork versions 0.1.0 dated 2026-06-20 and 0.1.1 dated 2026-09-06
DESCRIPTION | 6 MD5 | 42 ++-- NEWS.md | 33 +++ R/neuralnetwork.R | 368 ++++++++++++++++++++++++++++++++++----- README.md | 65 +++--- build/vignette.rds |binary inst/doc/neuralnetwork.Rmd | 88 ++++----- inst/doc/neuralnetwork.html | 112 ++++++----- man/compat.Rd | 17 + man/neuralnetwork-callbacks.Rd | 4 man/neuralnetwork-objects.Rd | 4 man/neuralnetwork-package.Rd | 25 +- man/nn_cv.Rd | 15 - man/nn_evaluate.Rd | 5 man/nn_fit.Rd | 69 ++++--- man/nn_permutation_importance.Rd | 9 man/nn_tune.Rd | 33 ++- man/predict.neuralnetwork.Rd | 3 man/print.neuralnetwork.Rd | 4 man/summary.neuralnetwork.Rd | 8 tests/test-basic.R | 189 ++++++++++++++++++++ vignettes/neuralnetwork.Rmd | 88 ++++----- 22 files changed, 880 insertions(+), 307 deletions(-)
Title: Knowledge Space Theory Input/Output
Description: Knowledge space theory by Doignon and Falmagne (1999)
<doi:10.1007/978-3-642-58625-5> is a set- and order-theoretical
framework which proposes mathematical formalisms to operationalize
knowledge structures in a particular domain. The 'kstIO' package
provides basic functionalities to read and write KST data from/to
files to be used together with the 'kst', 'kstMatrix', 'pks', or
'DAKS' packages.
Author: Cord Hockemeyer [aut, cre]
Maintainer: Cord Hockemeyer <cord.hockemeyer@uni-graz.at>
Diff between kstIO versions 0.5-1 dated 2026-04-11 and 0.6-0 dated 2026-09-06
kstIO-0.5-1/kstIO/inst/doc/kstIO.Rnw |only kstIO-0.5-1/kstIO/inst/doc/kstIO.pdf |only kstIO-0.5-1/kstIO/man/kstIO-package.Rd |only kstIO-0.5-1/kstIO/vignettes/a4wide.sty |only kstIO-0.5-1/kstIO/vignettes/abbrvnat.bst |only kstIO-0.5-1/kstIO/vignettes/kst.bib |only kstIO-0.5-1/kstIO/vignettes/kstIO.Rnw |only kstIO-0.6-0/kstIO/Changelog | 101 ++-- kstIO-0.6-0/kstIO/DESCRIPTION | 13 kstIO-0.6-0/kstIO/MD5 | 87 ++-- kstIO-0.6-0/kstIO/NAMESPACE | 72 ++- kstIO-0.6-0/kstIO/R/as.binaryMatrix.R | 28 - kstIO-0.6-0/kstIO/R/as.famset.R | 35 + kstIO-0.6-0/kstIO/R/read_kbase.R | 318 ++++++++------- kstIO-0.6-0/kstIO/R/read_kdata.R | 302 +++++++------- kstIO-0.6-0/kstIO/R/read_kfamset.R | 238 ++++++----- kstIO-0.6-0/kstIO/R/read_kspace.R | 316 ++++++++------- kstIO-0.6-0/kstIO/R/read_kstructure.R | 315 ++++++++------- kstIO-0.6-0/kstIO/R/read_surmisefunction.R | 99 +++- kstIO-0.6-0/kstIO/R/read_surmiserelation.R | 388 +++++++++++++------ kstIO-0.6-0/kstIO/R/write_kbase.R | 195 +++++---- kstIO-0.6-0/kstIO/R/write_kdata.R | 174 ++++---- kstIO-0.6-0/kstIO/R/write_kfamset.R | 195 +++++---- kstIO-0.6-0/kstIO/R/write_kspace.R | 209 +++++----- kstIO-0.6-0/kstIO/R/write_kstructure.R | 191 +++++---- kstIO-0.6-0/kstIO/R/write_surmisefunction.R | 144 +++++-- kstIO-0.6-0/kstIO/R/write_surmiserelation.R | 265 +++++++++--- kstIO-0.6-0/kstIO/build/vignette.rds |binary kstIO-0.6-0/kstIO/inst/doc/kstIO.R | 79 --- kstIO-0.6-0/kstIO/inst/doc/kstIO.Rmd |only kstIO-0.6-0/kstIO/inst/doc/kstIO.html |only kstIO-0.6-0/kstIO/man/as.binaryMatrix.Rd |only kstIO-0.6-0/kstIO/man/as.famset.Rd |only kstIO-0.6-0/kstIO/man/read_kbase.Rd | 139 ++---- kstIO-0.6-0/kstIO/man/read_kdata.Rd | 134 ++---- kstIO-0.6-0/kstIO/man/read_kfamset.Rd | 138 ++---- kstIO-0.6-0/kstIO/man/read_kspace.Rd | 142 ++---- kstIO-0.6-0/kstIO/man/read_kstructure.Rd | 138 ++---- kstIO-0.6-0/kstIO/man/read_surmisefunction.Rd | 91 ++-- kstIO-0.6-0/kstIO/man/read_surmiserelation.Rd | 135 +++--- kstIO-0.6-0/kstIO/man/write_kbase.Rd | 99 ++-- kstIO-0.6-0/kstIO/man/write_kdata.Rd | 96 ++-- kstIO-0.6-0/kstIO/man/write_kfamset.Rd | 108 ++--- kstIO-0.6-0/kstIO/man/write_kspace.Rd | 116 ++--- kstIO-0.6-0/kstIO/man/write_kstructure.Rd | 115 ++--- kstIO-0.6-0/kstIO/man/write_surmisefunction.Rd | 74 ++- kstIO-0.6-0/kstIO/man/write_surmiserelation.Rd | 100 ++-- kstIO-0.6-0/kstIO/vignettes/Screenshot_ODS.jpeg |only kstIO-0.6-0/kstIO/vignettes/kstClasses.jpeg |only kstIO-0.6-0/kstIO/vignettes/kstIO.Rmd |only kstIO-0.6-0/kstIO/vignettes/kstMatrixClasses_v2.jpeg |only kstIO-0.6-0/kstIO/vignettes/xpl_bas.csv |only kstIO-0.6-0/kstIO/vignettes/xpl_bas.ods |only 53 files changed, 2931 insertions(+), 2458 deletions(-)
Title: Companion Package for 'Reproducible Research Using R'
Description: Provides teaching datasets and helper functions to support the open
educational resource Martinez (2026) "Reproducible Research Using R"
<doi:10.5281/zenodo.19136755>. The package includes datasets used throughout
the book and utilities to list and copy chapter scripts shipped with the package.
Author: Christian Martinez [aut, cre]
Maintainer: Christian Martinez <c.martinez0@outlook.com>
Diff between reproresearchR versions 0.1.1 dated 2026-03-25 and 0.1.2 dated 2026-09-06
DESCRIPTION | 22 +++++---- MD5 | 33 ++++++++++---- NAMESPACE | 1 NEWS.md | 18 +++++++ R/chapter_materials.R |only R/chapter_script.R | 63 ++++++++++++++++++++++---- R/list_chapters.R | 94 ++++++++++++++++++++++++++++------------ README.md | 110 ++++++++++++++++++++++++++++++++++++++--------- inst/chapters |only man/chapter_materials.Rd |only man/chapter_script.Rd | 11 ++-- man/list_chapters.Rd | 9 ++- 12 files changed, 279 insertions(+), 82 deletions(-)
More information about reproresearchR at CRAN
Permanent link
Title: Estimation for some Reliability Distributions
Description: Parameters estimation and linear regression models for Reliability
distributions families reviewed by Almalki & Nadarajah (2014)
<doi:10.1016/j.ress.2013.11.010> using Generalized Additive
Models for Location, Scale and Shape, GAMLSS by Rigby & Stasinopoulos
(2005) <doi:10.1111/j.1467-9876.2005.00510.x>.
Author: Freddy Hernandez-Barajas [aut, cre] ,
Olga Usuga [aut] ,
Carmen Patino [aut],
Jaime Mosquera [aut]
Maintainer: Freddy Hernandez-Barajas <fhernanb@unal.edu.co>
Diff between RelDists versions 1.0.1 dated 2026-02-24 and 1.0.2 dated 2026-09-06
RelDists-1.0.1/RelDists/man/estim_mu_sigma_CJ2.Rd |only RelDists-1.0.1/RelDists/man/logLik_CJ2.Rd |only RelDists-1.0.2/RelDists/DESCRIPTION | 10 RelDists-1.0.2/RelDists/MD5 | 170 + RelDists-1.0.2/RelDists/NAMESPACE | 162 + RelDists-1.0.2/RelDists/R/AddW.R | 403 ++-- RelDists-1.0.2/RelDists/R/BGE.R | 443 ++-- RelDists-1.0.2/RelDists/R/BS.R | 189 - RelDists-1.0.2/RelDists/R/BS10.R |only RelDists-1.0.2/RelDists/R/BS11.R |only RelDists-1.0.2/RelDists/R/BS12.R |only RelDists-1.0.2/RelDists/R/BS13.R |only RelDists-1.0.2/RelDists/R/BS2.R | 259 +- RelDists-1.0.2/RelDists/R/BS3.R | 263 +- RelDists-1.0.2/RelDists/R/BS4.R |only RelDists-1.0.2/RelDists/R/BS5.R |only RelDists-1.0.2/RelDists/R/BS6.R |only RelDists-1.0.2/RelDists/R/BS7.R |only RelDists-1.0.2/RelDists/R/BS8.R |only RelDists-1.0.2/RelDists/R/CJ2.R | 311 +-- RelDists-1.0.2/RelDists/R/EEG.R | 231 +- RelDists-1.0.2/RelDists/R/EGG.R | 547 ++--- RelDists-1.0.2/RelDists/R/EMWEx.R | 405 ++-- RelDists-1.0.2/RelDists/R/EOFNH.R | 593 ++--- RelDists-1.0.2/RelDists/R/EW.R | 287 +- RelDists-1.0.2/RelDists/R/EXL.R | 253 +- RelDists-1.0.2/RelDists/R/ExW.R | 323 +-- RelDists-1.0.2/RelDists/R/ExWALD.R | 609 +++--- RelDists-1.0.2/RelDists/R/FWE.R | 223 +- RelDists-1.0.2/RelDists/R/GAo.R |only RelDists-1.0.2/RelDists/R/GGD.R | 323 +-- RelDists-1.0.2/RelDists/R/GIW.R | 291 +- RelDists-1.0.2/RelDists/R/GLIN.R |only RelDists-1.0.2/RelDists/R/GMW.R | 373 +-- RelDists-1.0.2/RelDists/R/GammaW.R | 275 +- RelDists-1.0.2/RelDists/R/IPXLIN.R |only RelDists-1.0.2/RelDists/R/IW.R | 203 +- RelDists-1.0.2/RelDists/R/KumIW.R | 329 +-- RelDists-1.0.2/RelDists/R/LIN.R | 111 - RelDists-1.0.2/RelDists/R/LW.R | 217 +- RelDists-1.0.2/RelDists/R/MOEIW.R | 315 +-- RelDists-1.0.2/RelDists/R/MOEW.R | 339 +-- RelDists-1.0.2/RelDists/R/MOK.R | 509 ++--- RelDists-1.0.2/RelDists/R/MW.R | 285 +- RelDists-1.0.2/RelDists/R/NEE.R | 349 +-- RelDists-1.0.2/RelDists/R/OW.R | 383 +-- RelDists-1.0.2/RelDists/R/PL.R | 215 +- RelDists-1.0.2/RelDists/R/QXGP.R | 317 +-- RelDists-1.0.2/RelDists/R/RW.R | 205 +- RelDists-1.0.2/RelDists/R/SZMW.R | 285 +- RelDists-1.0.2/RelDists/R/WALD.R | 261 +- RelDists-1.0.2/RelDists/R/WG.R | 309 +-- RelDists-1.0.2/RelDists/R/WGEE.R | 337 +-- RelDists-1.0.2/RelDists/R/WP.R | 281 +- RelDists-1.0.2/RelDists/R/checklink.R |only RelDists-1.0.2/RelDists/R/dBS.R | 366 +-- RelDists-1.0.2/RelDists/R/dBS10.R |only RelDists-1.0.2/RelDists/R/dBS11.R |only RelDists-1.0.2/RelDists/R/dBS12.R |only RelDists-1.0.2/RelDists/R/dBS13.R |only RelDists-1.0.2/RelDists/R/dBS4.R |only RelDists-1.0.2/RelDists/R/dBS5.R |only RelDists-1.0.2/RelDists/R/dBS6.R |only RelDists-1.0.2/RelDists/R/dBS7.R |only RelDists-1.0.2/RelDists/R/dBS8.R |only RelDists-1.0.2/RelDists/R/dGAo.R |only RelDists-1.0.2/RelDists/R/dGLIN.R |only RelDists-1.0.2/RelDists/R/dGammaW.R | 283 +- RelDists-1.0.2/RelDists/R/dIPXLIN.R |only RelDists-1.0.2/RelDists/R/dMCWEI.R |only RelDists-1.0.2/RelDists/R/make.link.gamlss.R |only RelDists-1.0.2/RelDists/README.md | 80 RelDists-1.0.2/RelDists/build/vignette.rds |binary RelDists-1.0.2/RelDists/inst/doc/FWE_distribution.R | 110 - RelDists-1.0.2/RelDists/inst/doc/FWE_distribution.html | 833 ++++---- RelDists-1.0.2/RelDists/inst/doc/OW_distribution.R | 432 ++-- RelDists-1.0.2/RelDists/inst/doc/OW_distribution.html | 1699 ++++++++--------- RelDists-1.0.2/RelDists/man/BS.Rd | 2 RelDists-1.0.2/RelDists/man/BS10.Rd |only RelDists-1.0.2/RelDists/man/BS11.Rd |only RelDists-1.0.2/RelDists/man/BS12.Rd |only RelDists-1.0.2/RelDists/man/BS13.Rd |only RelDists-1.0.2/RelDists/man/BS2.Rd | 2 RelDists-1.0.2/RelDists/man/BS3.Rd | 2 RelDists-1.0.2/RelDists/man/BS4.Rd |only RelDists-1.0.2/RelDists/man/BS5.Rd |only RelDists-1.0.2/RelDists/man/BS6.Rd |only RelDists-1.0.2/RelDists/man/BS7.Rd |only RelDists-1.0.2/RelDists/man/BS8.Rd |only RelDists-1.0.2/RelDists/man/GAo.Rd |only RelDists-1.0.2/RelDists/man/GLIN.Rd |only RelDists-1.0.2/RelDists/man/GammaW.Rd | 10 RelDists-1.0.2/RelDists/man/IPXLIN.Rd |only RelDists-1.0.2/RelDists/man/checklink.Rd |only RelDists-1.0.2/RelDists/man/dBS.Rd | 27 RelDists-1.0.2/RelDists/man/dBS10.Rd |only RelDists-1.0.2/RelDists/man/dBS11.Rd |only RelDists-1.0.2/RelDists/man/dBS12.Rd |only RelDists-1.0.2/RelDists/man/dBS13.Rd |only RelDists-1.0.2/RelDists/man/dBS2.Rd | 2 RelDists-1.0.2/RelDists/man/dBS3.Rd | 2 RelDists-1.0.2/RelDists/man/dBS4.Rd |only RelDists-1.0.2/RelDists/man/dBS5.Rd |only RelDists-1.0.2/RelDists/man/dBS6.Rd |only RelDists-1.0.2/RelDists/man/dBS7.Rd |only RelDists-1.0.2/RelDists/man/dBS8.Rd |only RelDists-1.0.2/RelDists/man/dGAo.Rd |only RelDists-1.0.2/RelDists/man/dGLIN.Rd |only RelDists-1.0.2/RelDists/man/dGammaW.Rd | 79 RelDists-1.0.2/RelDists/man/dIPXLIN.Rd |only RelDists-1.0.2/RelDists/man/dMCWEI.Rd |only RelDists-1.0.2/RelDists/man/estim_mu_sigma_GLIN.Rd |only RelDists-1.0.2/RelDists/man/initValuesFWE.Rd | 38 RelDists-1.0.2/RelDists/man/logLik_GLIN.Rd |only RelDists-1.0.2/RelDists/man/make.link.gamlss.Rd |only 115 files changed, 8146 insertions(+), 8014 deletions(-)
Title: Pre- And Post-Processing in Bayesian Evolutionary Analyses
Description: Functions are provided for prior specification in divergence time
estimation using fossils as well as other kinds of data. It
provides tools for interacting with the input and output of Bayesian
platforms in evolutionary biology such as 'BEAST2', 'MrBayes', 'RevBayes',
or 'MCMCTree'.
It Implements a simple measure similarity between probability
density functions for comparing prior and
posterior Bayesian densities, as well as code for calculating the
combination of distributions using conflation of Hill (2008). Functions for estimating the
origination time in collections of distributions using the x-intercept (e.g., Draper and Smith, 1998) and
stratigraphic intervals (Marshall 2010) are also available.
Hill, T. 2008. "Conflations of probability distributions". Transactions of the American Mathematical Society, 363:3351-3372. <doi:10.48550/arXiv.0808.1808>,
Draper, N. R. and Smith, H. 1998. "Applied Regression Analysis". 1--706. Wiley Interscience, New York. <DOI:10.1002/978111 [...truncated...]
Author: Gustavo A. Ballen [aut, cre],
Sandra Reinales [aut]
Maintainer: Gustavo A. Ballen <gustavo.a.ballen@gmail.com>
Diff between tbea versions 1.7.0 dated 2025-08-19 and 1.8.0 dated 2026-09-06
DESCRIPTION | 8 +- MD5 | 41 +++++++------- NAMESPACE | 71 ++++++++++++++---------- R/topoFreq.R | 87 ++++++++++++++++++++++-------- README.md | 33 ++++++----- build/partial.rdb |binary build/vignette.rds |binary inst/doc/concatenation.html | 4 - inst/doc/conflation.html | 8 +- inst/doc/intro.html | 8 +- inst/doc/l_calibration_mcmctree.html | 4 - inst/doc/node_calibration_density.html | 8 +- inst/doc/posterior_tree_distribution.html | 6 +- inst/doc/prior_posterior_comparisons.html | 10 +-- inst/doc/starting_tree.html | 50 ++++++++--------- inst/doc/stratigraphic_intervals.html | 6 +- inst/doc/whyInitVals.html | 20 +++--- inst/doc/x_intercept.html | 6 +- man/figures |only man/tbea-package.Rd | 3 + man/topoFreq.Rd | 8 ++ tests/testthat/test-topoFreq.R | 53 ++++++++++++++++++ 22 files changed, 276 insertions(+), 158 deletions(-)
Title: Discrete Statistical Distributions
Description: Implementation of new discrete statistical distributions. Each distribution includes the traditional functions as well as an additional function called the family function, which can be used to estimate parameters within the 'gamlss' framework.
Author: Freddy Hernandez-Barajas [aut, cre] ,
Fernando Marmolejo-Ramos [aut] ,
Olga Usuga-Manco [aut] ,
Jamiu Olumoh [aut] ,
Osho Ajayi [aut]
Maintainer: Freddy Hernandez-Barajas <fhernanb@unal.edu.co>
Diff between DiscreteDists versions 1.1.2 dated 2026-02-19 and 1.1.3 dated 2026-09-06
DESCRIPTION | 10 +- MD5 | 71 ++++++++++++++------- NAMESPACE | 63 +++++++++++++++--- NEWS.md | 2 R/BerG.R | 1 R/COMPO.R | 1 R/COMPO2.R | 1 R/DBH.R | 1 R/DGEII.R | 1 R/DIKUM.R | 1 R/DLD.R | 1 R/DMOLBE.R | 1 R/DPERKS.R | 1 R/DsPA.R | 1 R/GGEO.R | 1 R/HYPERPO.R | 1 R/HYPERPO2.R | 1 R/NMES1988.R |only R/NPGL.R |only R/NPGL2.R |only R/POISXL.R | 1 R/PTRTE.R |only R/RcppExports.R | 142 +++++++++++++++++++++--------------------- R/azpro.R |only R/checklink.R |only R/dDMOLBE.R | 9 ++ R/dNPGL.R |only R/dNPGL2.R |only R/dPTRTE.R |only R/make.link.gamlss.R |only README.md | 2 data/NMES1988.rda |only data/azpro.rda |only man/NMES1988.Rd |only man/NPGL.Rd |only man/NPGL2.Rd |only man/PTRTE.Rd |only man/azpro.Rd |only man/checklink.Rd |only man/dNPGL.Rd |only man/dNPGL2.Rd |only man/dPTRTE.Rd |only man/estim_mu_sigma_NPGL.Rd |only man/estim_mu_sigma_NPGL2.Rd |only man/estim_mu_sigma_NPGL_MM.Rd |only man/estim_mu_sigma_PTRTE.Rd |only man/figures |only man/logLik_NPGL.Rd |only man/logLik_NPGL2.Rd |only man/make.link.gamlss.Rd |only src/RcppExports.cpp | 2 51 files changed, 189 insertions(+), 126 deletions(-)
Title: Regularized PQL for Joint Selection in GLMMs
Description: Performs joint selection in Generalized Linear Mixed Models (GLMMs) using penalized likelihood methods. Specifically, the Penalized Quasi-Likelihood (PQL) is used as a loss function, and penalties are then augmented to perform simultaneous fixed and random effects selection. Regularized PQL avoids the need for integration (or approximations such as the Laplace's method) during the estimation process, and so the full solution path for model selection can be constructed relatively quickly.
Author: Francis K.C. Hui [aut, cre]
Maintainer: Francis K.C. Hui <fhui28@gmail.com>
Diff between rpql versions 0.8.3 dated 2025-12-17 and 0.8.4 dated 2026-09-06
DESCRIPTION | 10 +++---- MD5 | 21 ++++++++------- NAMESPACE | 4 +-- R/auxilaryfunctions.R | 66 +++++++++++++++++++++++++++++++++++++------------- R/hiddenfunctions.R | 42 ++++++++++++++++++++++++++++--- R/rpql-main.R | 59 ++++++++++++++++++++++++-------------------- R/summaryfunctions.R | 4 +-- build/partial.rdb |binary man/ZIP.Rd |only man/calc.marglogL.Rd | 2 - man/gendat.glmm.Rd | 6 ++-- man/rpql.Rd | 44 +-------------------------------- 12 files changed, 144 insertions(+), 114 deletions(-)
Title: A General Framework for Latent Class and Profile Analysis
Description: Provides a unified framework for finite-mixture latent variable
models, including latent class analysis (LCA), latent profile analysis (LPA),
latent class/profile analysis with covariates, and latent transition analysis
(LTA), within one consistent interface. Estimation methods include the
expectation-maximization (EM) algorithm; neural network estimation, which
requires 'Python' and its dependent libraries; integration with 'Mplus',
which requires an installed copy of 'Mplus'; and stochastic EM (SEM) through
the optional 'flexmix', 'Rmixmod', and 'RMixtComp' backends. 'flexmix' and the
default 'Rmixmod' path perform configurable warm-up trajectories and promote
the best candidates to full SEM replications. 'Rmixmod' additionally exposes
its native strategy interface, including chained SEM-to-EM estimation,
whereas 'RMixtComp' exposes its native SEM and Gibbs controls without the
external warm-up stage. Model assessment includes the Akaike information
criterion (AIC), Bayesian informat [...truncated...]
Author: Haijiang Qin [aut, cre, cph] ,
Lei Guo [aut, cph]
Maintainer: Haijiang Qin <haijiang133@outlook.com>
Diff between LCPA versions 1.0.2 dated 2026-04-10 and 1.0.4 dated 2026-09-06
LCPA-1.0.2/LCPA/R/logpdf_component.R |only LCPA-1.0.2/LCPA/inst/python/simulation.py |only LCPA-1.0.4/LCPA/DESCRIPTION | 70 LCPA-1.0.4/LCPA/MD5 | 205 - LCPA-1.0.4/LCPA/NAMESPACE | 131 LCPA-1.0.4/LCPA/NEWS.md | 53 LCPA-1.0.4/LCPA/R/BCH.XZ.LCPA.R |only LCPA-1.0.4/LCPA/R/BCH.XZ.LTA.R |only LCPA-1.0.4/LCPA/R/BCH.XZ.utils.R |only LCPA-1.0.4/LCPA/R/BCH.ZY.LCPA.R |only LCPA-1.0.4/LCPA/R/BCH.ZY.LTA.R |only LCPA-1.0.4/LCPA/R/EM.LCA.R | 343 +- LCPA-1.0.4/LCPA/R/EM.LPA.R | 1042 ++----- LCPA-1.0.4/LCPA/R/Kmeans.LCA.R | 81 LCPA-1.0.4/LCPA/R/Kmeans.LPA.R |only LCPA-1.0.4/LCPA/R/LCA.R | 1211 +++++--- LCPA-1.0.4/LCPA/R/LCPA.R | 1377 ++++----- LCPA-1.0.4/LCPA/R/LPA.R | 1313 +++++---- LCPA-1.0.4/LCPA/R/LRT.test.Bootstrap.R | 260 + LCPA-1.0.4/LCPA/R/LRT.test.R | 85 LCPA-1.0.4/LCPA/R/LRT.test.VLMR.R | 395 ++ LCPA-1.0.4/LCPA/R/LTA.R | 1805 ++++++------ LCPA-1.0.4/LCPA/R/ML.XZ.LCPA.R |only LCPA-1.0.4/LCPA/R/ML.XZ.LTA.R |only LCPA-1.0.4/LCPA/R/ML.ZY.LCPA.R |only LCPA-1.0.4/LCPA/R/ML.ZY.LTA.R |only LCPA-1.0.4/LCPA/R/ML.ZY.utils.R |only LCPA-1.0.4/LCPA/R/Mplus.LCA.R | 112 LCPA-1.0.4/LCPA/R/Mplus.LPA.R | 264 - LCPA-1.0.4/LCPA/R/RMixtComp.LCA.R |only LCPA-1.0.4/LCPA/R/RMixtComp.LPA.R |only LCPA-1.0.4/LCPA/R/RMixtComp.utils.R |only LCPA-1.0.4/LCPA/R/RcppExports.R | 52 LCPA-1.0.4/LCPA/R/Rmixmod.LCA.R |only LCPA-1.0.4/LCPA/R/Rmixmod.LPA.R |only LCPA-1.0.4/LCPA/R/Rmixmod.utils.R |only LCPA-1.0.4/LCPA/R/S3extract.R | 254 + LCPA-1.0.4/LCPA/R/S3plot.R | 69 LCPA-1.0.4/LCPA/R/S3print.R | 2887 +++++++++++-------- LCPA-1.0.4/LCPA/R/S3summary.R | 3037 +++++++++++---------- LCPA-1.0.4/LCPA/R/S3update.R | 393 +- LCPA-1.0.4/LCPA/R/XZ.LCPA.R |only LCPA-1.0.4/LCPA/R/XZ.LTA.R |only LCPA-1.0.4/LCPA/R/ZY.LCPA.R |only LCPA-1.0.4/LCPA/R/ZY.LTA.R |only LCPA-1.0.4/LCPA/R/ZY.utils.R |only LCPA-1.0.4/LCPA/R/adjust.model.R | 23 LCPA-1.0.4/LCPA/R/compare.model.R | 57 LCPA-1.0.4/LCPA/R/flexmix.LCA.R |only LCPA-1.0.4/LCPA/R/flexmix.LPA.R |only LCPA-1.0.4/LCPA/R/flexmix.utils.R |only LCPA-1.0.4/LCPA/R/get.AvePP.R | 39 LCPA-1.0.4/LCPA/R/get.CEP.R | 290 +- LCPA-1.0.4/LCPA/R/get.Log.Lik.LCA.R | 79 LCPA-1.0.4/LCPA/R/get.Log.Lik.LPA.R | 463 ++- LCPA-1.0.4/LCPA/R/get.Log.Lik.LTA.R | 214 - LCPA-1.0.4/LCPA/R/get.P.Z.Xn.LCA.R | 144 LCPA-1.0.4/LCPA/R/get.P.Z.Xn.LPA.R | 102 LCPA-1.0.4/LCPA/R/get.SE.R | 1314 +++++---- LCPA-1.0.4/LCPA/R/get.entropy.R | 29 LCPA-1.0.4/LCPA/R/get.fit.index.R | 55 LCPA-1.0.4/LCPA/R/get.npar.LCA.R | 32 LCPA-1.0.4/LCPA/R/get.npar.LTA.R | 54 LCPA-1.0.4/LCPA/R/install_python_dependencies.R | 4 LCPA-1.0.4/LCPA/R/logit.R | 6 LCPA-1.0.4/LCPA/R/rdirichlet.R | 29 LCPA-1.0.4/LCPA/R/sim.LCA.R | 138 LCPA-1.0.4/LCPA/R/sim.LPA.R | 219 - LCPA-1.0.4/LCPA/R/sim.LTA.R | 438 +-- LCPA-1.0.4/LCPA/R/sim.correlation.R | 65 LCPA-1.0.4/LCPA/R/simulation.utils.R |only LCPA-1.0.4/LCPA/R/three.step.utils.R |only LCPA-1.0.4/LCPA/R/tools.R | 44 LCPA-1.0.4/LCPA/R/utils.R | 183 + LCPA-1.0.4/LCPA/build |only LCPA-1.0.4/LCPA/inst/python/Net_LCA.py | 308 +- LCPA-1.0.4/LCPA/inst/python/Net_LPA.py | 468 +-- LCPA-1.0.4/LCPA/inst/python/__pycache__ |only LCPA-1.0.4/LCPA/man/Kmeans.LCA.Rd | 25 LCPA-1.0.4/LCPA/man/Kmeans.LPA.Rd |only LCPA-1.0.4/LCPA/man/LCA.Rd | 408 ++ LCPA-1.0.4/LCPA/man/LCPA.Rd | 914 +++--- LCPA-1.0.4/LCPA/man/LPA.Rd | 492 ++- LCPA-1.0.4/LCPA/man/LRT.test.Bootstrap.Rd | 64 LCPA-1.0.4/LCPA/man/LRT.test.Rd | 20 LCPA-1.0.4/LCPA/man/LRT.test.VLMR.Rd | 137 LCPA-1.0.4/LCPA/man/LTA.Rd | 1265 ++++++-- LCPA-1.0.4/LCPA/man/adjust.model.Rd | 2 LCPA-1.0.4/LCPA/man/compare.model.Rd | 33 LCPA-1.0.4/LCPA/man/extract.Rd | 70 LCPA-1.0.4/LCPA/man/get.AvePP.Rd | 20 LCPA-1.0.4/LCPA/man/get.CEP.Rd | 234 + LCPA-1.0.4/LCPA/man/get.Log.Lik.LCA.Rd | 55 LCPA-1.0.4/LCPA/man/get.Log.Lik.LPA.Rd | 84 LCPA-1.0.4/LCPA/man/get.Log.Lik.LTA.Rd | 114 LCPA-1.0.4/LCPA/man/get.P.Z.Xn.LCA.Rd | 29 LCPA-1.0.4/LCPA/man/get.P.Z.Xn.LPA.Rd | 13 LCPA-1.0.4/LCPA/man/get.SE.Rd | 109 LCPA-1.0.4/LCPA/man/get.entropy.Rd | 19 LCPA-1.0.4/LCPA/man/get.fit.index.Rd | 21 LCPA-1.0.4/LCPA/man/get.npar.LCA.Rd | 24 LCPA-1.0.4/LCPA/man/get.npar.LTA.Rd | 50 LCPA-1.0.4/LCPA/man/install_python_dependencies.Rd | 4 LCPA-1.0.4/LCPA/man/logit.Rd | 4 LCPA-1.0.4/LCPA/man/plot.Rd | 10 LCPA-1.0.4/LCPA/man/print.Rd | 78 LCPA-1.0.4/LCPA/man/rdirichlet.Rd | 29 LCPA-1.0.4/LCPA/man/sim.LCA.Rd | 42 LCPA-1.0.4/LCPA/man/sim.LPA.Rd | 51 LCPA-1.0.4/LCPA/man/sim.LTA.Rd | 129 LCPA-1.0.4/LCPA/man/sim.correlation.Rd | 22 LCPA-1.0.4/LCPA/man/summary.Rd | 240 - LCPA-1.0.4/LCPA/man/update.Rd | 94 LCPA-1.0.4/LCPA/src/LCA.cpp | 174 - LCPA-1.0.4/LCPA/src/LCA_derivatives.cpp |only LCPA-1.0.4/LCPA/src/LPA.cpp |only LCPA-1.0.4/LCPA/src/LTA.cpp | 440 +-- LCPA-1.0.4/LCPA/src/LTA_simulation.cpp |only LCPA-1.0.4/LCPA/src/RcppExports.cpp | 206 + LCPA-1.0.4/LCPA/src/classification.cpp |only LCPA-1.0.4/LCPA/src/three_step.cpp |only LCPA-1.0.4/LCPA/tests/demo.R | 78 122 files changed, 15014 insertions(+), 11025 deletions(-)
Title: Panels and Interactive Versions of Diagnostic Plots using
'ggplot2'
Description: An R package for creating diagnostic plots for models. The package allows for the
creation of panels of plots and interactive plots.
Author: Katherine Goode [aut, cre],
Kathleen Rey [aut],
Mark Greenwood [aut]
Maintainer: Katherine Goode <katherine.j.goode@gmail.com>
Diff between ggResidpanel versions 0.4.0 dated 2026-09-05 and 0.4.1 dated 2026-09-06
DESCRIPTION | 19 ++- MD5 | 41 +++++-- NEWS.md | 9 + README.md | 150 +++++++++++++++++++++++------ inst/doc/introduction.R | 35 ++++++ inst/doc/introduction.Rmd | 61 +++++++++++ inst/doc/introduction.html | 129 ++++++++++++++++++++---- inst/figures/readme-unnamed-chunk-10-1.png |only inst/figures/readme-unnamed-chunk-5-1.png |only inst/figures/readme-unnamed-chunk-5-2.png |only inst/figures/readme-unnamed-chunk-5-3.png |only inst/figures/readme-unnamed-chunk-6-1.png |binary inst/figures/readme-unnamed-chunk-6-2.png |binary inst/figures/readme-unnamed-chunk-7-2.png |only inst/figures/readme-unnamed-chunk-9-1.png |binary man/figures |only vignettes/introduction.Rmd | 61 +++++++++++ 17 files changed, 433 insertions(+), 72 deletions(-)
Title: Spatial Modeling of Infectious Disease with Reinfection
Description: Geographically Dependent Individual Level Models (GDILMs) within the Susceptible-Exposed-Infectious-Recovered-Susceptible (SEIRS) framework are applied to model infectious disease transmission, incorporating reinfection dynamics. This package employs a likelihood based Monte Carlo Expectation Conditional Maximization (MCECM) algorithm for estimating model parameters. It also provides tools for GDILM fitting, parameter estimation, AIC calculation on real pandemic data, and simulation studies customized to user-defined model settings. The methods are
described in Abed, Torabi and Mashreghi (2025) <doi:10.1016/j.sste.2025.100780>.
Author: Amin Abed [aut, cre, cph] ,
Mahmoud Torabi [ths],
Zeinab Mashreghi [ths]
Maintainer: Amin Abed <abeda@myumanitoba.ca>
This is a re-admission after prior archival of version 0.0.6 dated 2026-02-13
Diff between GDILM.SEIRS versions 0.0.6 dated 2026-02-13 and 0.0.7 dated 2026-09-06
DESCRIPTION | 13 - MD5 | 16 - R/GDILM_SEIRS_Par_Est.R | 214 +++++++++++++++++------- R/GDILM_SEIRS_Sim_Par_Est.R | 223 ++++++++++++++++++-------- inst/CITATION | 30 +-- man/GDILM_SEIRS_Par_Est.Rd | 8 man/GDILM_SEIRS_Sim_Par_Est.Rd | 10 + tests/testthat/test-GDILM_SEIRS_Par_Est.R | 27 +++ tests/testthat/test-GDILM_SEIRS_Sim_Par_Est.R | 29 +++ 9 files changed, 410 insertions(+), 160 deletions(-)
Title: Parametric Distribution Fitting and Analysis
Description: Provides a unified, user-friendly interface for fitting parametric
probability distributions to continuous univariate data. 'FitVerse' supports
52 distribution families spanning symmetric, right-skewed, heavy-tailed,
bounded, and extreme-value shapes, and three estimation methods: Maximum
Likelihood Estimation (MLE), Method of Moments (MOM), and L-Moments (L-MOM).
Automatic best-fit selection is performed using AIC, BIC, and goodness-of-fit
tests (Kolmogorov-Smirnov, Anderson-Darling, Cramer-von Mises (CvM)). Every
fitted model produces a publication-quality diagnostic plot: a histogram
overlaid with the fitted density curve and the estimated PDF formula annotated
directly on the figure. An optional interactive version is produced via
'plotly'. Additional tools include bootstrap confidence intervals for parameter
estimates and return levels, batch fitting across multiple columns for
automated workflows and web-upload use cases, JSON serialisation for
integration with 'Shiny' web applic [...truncated...]
Author: Karuna G. Reddy [aut, cre] ,
M. G. M. Khan [aut]
Maintainer: Karuna G. Reddy <karuna.reddy@auckland.ac.nz>
Diff between FitVerse versions 1.0-1 dated 2026-09-01 and 1.0-2 dated 2026-09-06
DESCRIPTION | 8 MD5 | 20 R/report.R | 3 build/partial.rdb |binary build/vignette.rds |binary inst/app/app.R | 10 inst/app/global.R | 2 inst/doc/fitverse-introduction.Rmd | 16 inst/doc/fitverse-introduction.html | 1949 ++++++++++++++++++------------------ man/fitverse.Rd | 3 vignettes/fitverse-introduction.Rmd | 16 11 files changed, 1035 insertions(+), 992 deletions(-)
Title: Analysis and Visualization of Circular Data
Description: Circumplex models, which organize constructs in a circle around two
underlying dimensions, are popular for studying interpersonal functioning,
mood/affect, and vocational preferences/environments. This package provides
tools for analyzing and visualizing circular data, including scoring
functions for relevant instruments and a generalization of the bootstrapped
structural summary method from Zimmermann & Wright (2017)
<doi:10.1177/1073191115621795> and functions for creating publication-ready
tables and figures from the results.
Author: Jeffrey Girard [aut, cre] ,
Johannes Zimmermann [aut] ,
Aidan Wright [aut]
Maintainer: Jeffrey Girard <me@jmgirard.com>
Diff between circumplex versions 2.0.0 dated 2026-09-02 and 2.0.1 dated 2026-09-06
DESCRIPTION | 6 MD5 | 108 +- NEWS.md | 35 inst/doc/advanced-visualization.html | 26 inst/doc/evaluating-circumplex-structure.html | 6 inst/doc/growth-ssm-analysis.html | 4 inst/doc/intermediate-ssm-analysis.html | 22 inst/doc/introduction-to-ssm-analysis.html | 20 inst/doc/sem-based-ssm-analysis.html | 4 tests/testthat/Rplots.pdf |binary tests/testthat/test-axes-certificate-refusal.R | 71 + tests/testthat/test-axes-certificate.R | 521 ++++++++-- tests/testthat/test-ssm_draws.R | 80 + tests/testthat/test-ssm_sem_syntax.R | 55 - vignettes/figures/advanced-visualization-canvas-default-1.png |binary vignettes/figures/advanced-visualization-canvas-descriptive-1.png |binary vignettes/figures/advanced-visualization-canvas-labels-1.png |binary vignettes/figures/advanced-visualization-coord-built-1.png |binary vignettes/figures/advanced-visualization-coord-center-1.png |binary vignettes/figures/advanced-visualization-coord-r-axis-1.png |binary vignettes/figures/advanced-visualization-curve-axis-1.png |binary vignettes/figures/advanced-visualization-individuals-1.png |binary vignettes/figures/advanced-visualization-occasions-path-1.png |binary vignettes/figures/advanced-visualization-occasions-path-wrapper-1.png |binary vignettes/figures/advanced-visualization-occasions-plot-1.png |binary vignettes/figures/advanced-visualization-results-plot-1.png |binary vignettes/figures/advanced-visualization-theming-1.png |binary vignettes/figures/evaluating-circumplex-structure-accuracy_plot-1.png |binary vignettes/figures/evaluating-circumplex-structure-cpm_plot-1.png |binary vignettes/figures/evaluating-circumplex-structure-fit_structure_plot-1.png |binary vignettes/figures/growth-ssm-analysis-lowamp-plot-1.png |binary vignettes/figures/growth-ssm-analysis-plot-1.png |binary vignettes/figures/intermediate-ssm-analysis-general_plot-1.png |binary vignettes/figures/intermediate-ssm-analysis-general_plot2-1.png |binary vignettes/figures/intermediate-ssm-analysis-general_plot3-1.png |binary vignettes/figures/intermediate-ssm-analysis-general_plot4-1.png |binary vignettes/figures/intermediate-ssm-analysis-group_contrast_plot-1.png |binary vignettes/figures/intermediate-ssm-analysis-group_plot-1.png |binary vignettes/figures/intermediate-ssm-analysis-group_plot2-1.png |binary vignettes/figures/intermediate-ssm-analysis-measure_contrast_plot-1.png |binary vignettes/figures/intermediate-ssm-analysis-measures_plot-1.png |binary vignettes/figures/intermediate-ssm-analysis-measures_plot2-1.png |binary vignettes/figures/intermediate-ssm-analysis-model_plot-1.png |binary vignettes/figures/introduction-to-ssm-analysis-column-1.png |binary vignettes/figures/introduction-to-ssm-analysis-curve-1.png |binary vignettes/figures/introduction-to-ssm-analysis-iipsc-1.png |binary vignettes/figures/introduction-to-ssm-analysis-model-1.png |binary vignettes/figures/introduction-to-ssm-analysis-path-1.png |binary vignettes/figures/introduction-to-ssm-analysis-plot1-1.png |binary vignettes/figures/introduction-to-ssm-analysis-plot2-1.png |binary vignettes/figures/introduction-to-ssm-analysis-plot3-1.png |binary vignettes/figures/introduction-to-ssm-analysis-plot4-1.png |binary vignettes/figures/introduction-to-ssm-analysis-residuals-1.png |binary vignettes/figures/sem-based-ssm-analysis-contrast-plot-1.png |binary vignettes/figures/sem-based-ssm-analysis-latent-plot-1.png |binary 55 files changed, 754 insertions(+), 204 deletions(-)
Title: A General-Purpose Package for Dynamic Report Generation in R
Description: Provides a general-purpose tool for dynamic report generation in R
using Literate Programming techniques.
Author: Yihui Xie [aut, cre] ,
Abhraneel Sarma [ctb],
Adam Vogt [ctb],
Alastair Andrew [ctb],
Alex Zvoleff [ctb],
Amar Al-Zubaidi [ctb],
Andre Simon [ctb] ,
Aron Atkins [ctb],
Aaron Wolen [ctb],
Ashley Manton [ctb],
Atsushi Yasumoto [ctb] ,
Ben Baumer [ctb], [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between knitr versions 1.51 dated 2025-12-20 and 1.52 dated 2026-09-06
DESCRIPTION | 24 +-- MD5 | 256 +++++++++++++++++------------------ NAMESPACE | 34 ++-- R/block.R | 89 ++++++------ R/cache.R | 62 ++++---- R/citation.R | 4 R/defaults.R | 43 +++-- R/engine.R | 70 +++++---- R/header.R | 20 +- R/hooks-extra.R | 62 ++++---- R/hooks-html.R | 37 +++-- R/hooks-latex.R | 133 +++++++++++------- R/hooks-md.R | 50 ++++-- R/hooks-typst.R |only R/hooks.R | 16 +- R/output.R | 193 +++++++++++++------------- R/package.R | 18 +- R/pandoc.R | 34 ++-- R/params.R | 48 +++--- R/parser.R | 160 +++++++++++---------- R/pattern.R | 27 ++- R/plot.R | 109 +++++++++----- R/rocco.R | 6 R/spin.R | 60 ++++---- R/table.R | 86 ++++++----- R/template.R | 28 +-- R/themes.R | 12 - R/utils-conversion.R | 190 +++++++++++++++---------- R/utils-rd2html.R | 16 +- R/utils-sweave.R | 60 ++++---- R/utils-upload.R | 6 R/utils-vignettes.R | 29 ++- R/utils.R | 144 +++++++++---------- build/vignette.rds |binary inst/doc/datatables.html | 14 - inst/doc/docco-classic.html | 26 +-- inst/doc/docco-linear.Rmd | 2 inst/doc/docco-linear.html | 18 +- inst/doc/knit_expand.html | 14 - inst/doc/knit_print.html | 18 +- inst/doc/knitr-html.html | 2 inst/doc/knitr-intro.Rmd | 2 inst/doc/knitr-intro.html | 30 ++-- inst/doc/knitr-markdown.html | 18 +- inst/doc/knitr-refcard.html | 10 - inst/misc/vignette.css | 4 man/Sweave2knitr.Rd | 27 +-- man/all_labels.Rd | 6 man/all_patterns.Rd | 5 man/asis_output.Rd | 8 - man/cache_engines.Rd | 7 man/chunk_hook.Rd | 23 +-- man/clean_cache.Rd | 16 +- man/combine_words.Rd | 2 man/convert_chunk_header.Rd | 35 ++-- man/current_input.Rd | 8 - man/dep_auto.Rd | 12 - man/dep_prev.Rd | 4 man/download_image.Rd | 6 man/engine_output.Rd | 4 man/fig_chunk.Rd | 12 - man/fig_path.Rd | 8 - man/hook_animation.Rd | 5 man/hook_document.Rd | 8 - man/hook_plot.Rd | 24 ++- man/image_uri.Rd | 2 man/imgur_upload.Rd | 2 man/include_graphics.Rd | 18 +- man/include_url.Rd | 6 man/inline_expr.Rd | 13 - man/is_low_change.Rd | 2 man/kable.Rd | 34 ++-- man/knit.Rd | 111 +++++++-------- man/knit2html.Rd | 34 ++-- man/knit2pandoc.Rd | 14 - man/knit2pdf.Rd | 23 +-- man/knit2wp.Rd | 24 +-- man/knit_child.Rd | 16 +- man/knit_code.Rd | 13 - man/knit_engines.Rd | 17 -- man/knit_exit.Rd | 10 - man/knit_expand.Rd | 4 man/knit_filter.Rd | 4 man/knit_global.Rd | 2 man/knit_hooks.Rd | 5 man/knit_meta.Rd | 2 man/knit_params.Rd | 30 ++-- man/knit_params_yaml.Rd | 12 - man/knit_patterns.Rd | 11 - man/knit_print.Rd | 14 - man/knit_rd.Rd | 15 -- man/knit_theme.Rd | 13 - man/knit_watch.Rd | 8 - man/knitr-package.Rd | 12 - man/load_cache.Rd | 20 +- man/opts_chunk.Rd | 15 -- man/opts_hooks.Rd | 5 man/opts_knit.Rd | 11 - man/opts_template.Rd | 5 man/output_hooks.Rd | 37 +++-- man/output_type.Rd | 9 - man/pandoc.Rd | 20 +- man/partition_chunk.Rd | 2 man/pat_fun.Rd | 5 man/plot_crop.Rd | 8 - man/rand_seed.Rd | 2 man/raw_block.Rd | 2 man/raw_output.Rd | 10 - man/read_chunk.Rd | 24 +-- man/rnw2pdf.Rd | 26 +-- man/rocco.Rd | 4 man/rst2pdf.Rd | 6 man/set_header.Rd | 8 - man/set_parent.Rd | 10 - man/sew.Rd | 2 man/spin.Rd | 50 +++--- man/spin_child.Rd | 10 - man/stitch.Rd | 16 +- man/vignette_engines.Rd | 22 +-- man/wrap_rmd.Rd | 6 man/write_bib.Rd | 2 tests/testit/test-hooks-latex.R | 76 ++++++++++ tests/testit/test-hooks-md.R | 25 +++ tests/testit/test-output.R | 6 tests/testit/test-plot.R | 56 +++++++ tests/testit/test-table.R | 22 +++ tests/testit/test-utils-conversion.R |only tests/testit/test-utils.R | 12 + vignettes/docco-linear.Rmd | 2 vignettes/knitr-intro.Rmd | 2 130 files changed, 1937 insertions(+), 1576 deletions(-)
Title: Model-Based Boosting
Description: Functional gradient descent algorithm
(boosting) for optimizing general risk functions utilizing
component-wise (penalised) least squares estimates or regression
trees as base-learners for fitting generalized linear, additive
and interaction models to potentially high-dimensional data.
Models and algorithms are described in <doi:10.1214/07-STS242>,
a hands-on tutorial is available from <doi:10.1007/s00180-012-0382-5>.
The package allows user-specified loss functions and base-learners.
Author: Torsten Hothorn [cre, aut] ,
Peter Buehlmann [aut] ,
Thomas Kneib [aut] ,
Matthias Schmid [aut] ,
Benjamin Hofner [aut] ,
Fabian Otto-Sobotka [ctb] ,
Fabian Scheipl [ctb] ,
Andreas Mayr [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mboost versions 2.9-13 dated 2026-07-17 and 2.9-14 dated 2026-09-06
DESCRIPTION | 6 +- MD5 | 66 +++++++++++++++--------------- NAMESPACE | 2 R/bkernel.R | 3 - R/bl.R | 49 +++++----------------- R/bmono.R | 14 +----- R/bmrf.R | 5 -- R/brad.R | 5 -- R/buser.R | 5 -- R/mboost.R | 6 -- R/methods.R | 5 -- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 8 +++ inst/REFERENCES.bib | 4 - inst/doc/SurvivalEnsembles.pdf |binary inst/doc/mboost.pdf |binary inst/doc/mboost_illustrations.pdf |binary inst/doc/mboost_tutorial.pdf |binary man/baselearners.Rd | 10 ---- man/cvrisk.Rd | 5 +- man/glmboost.Rd | 1 man/methods.Rd | 4 + man/survFit.Rd | 1 man/varimp.Rd | 1 tests/birds_Biometrics.Rout.save | 4 - tests/bugfixes.Rout.save | 37 +++++++---------- tests/regtest-baselearner.Rout.save | 78 ++++++++++++++---------------------- tests/regtest-blackboost.Rout.save | 4 - tests/regtest-family.Rout.save | 4 - tests/regtest-gamboost.Rout.save | 7 +-- tests/regtest-glmboost.Rout.save | 4 - tests/regtest-hatmatrix.Rout.save | 4 - tests/regtest-varimp.Rout.save | 4 - 34 files changed, 144 insertions(+), 202 deletions(-)
Title: Sample Size Calculation Tools
Description: Functions for sample size estimation and simulation in clinical
trials. Includes methods for selecting the best group using the
Indifference-zone approach, as well as designs for non-inferiority,
equivalence, and negative binomial models. For the sample size calculation
for non-inferiority of vaccines, the approach is based on Fleming, Powers,
and Huang (2021) <doi:10.1177/1740774520988244>. The Indifference-zone
approach is based on Sobel and Huyett (1957) <doi:10.1002/j.1538-7305.1957.tb02411.x> and
Bechhofer, Santner, and Goldsman (1995, ISBN:978-0-471-57427-9).
Author: John J. Aponte [aut, cre] ,
Chris Gast [ctb]
Maintainer: John J. Aponte <john.j.aponte@gmail.com>
Diff between ssutil versions 1.0.0 dated 2025-06-12 and 1.1.0 dated 2026-09-06
ssutil-1.0.0/ssutil/inst/doc/power_single_rate.R |only ssutil-1.0.0/ssutil/inst/doc/power_single_rate.Rmd |only ssutil-1.0.0/ssutil/inst/doc/power_single_rate.html |only ssutil-1.0.0/ssutil/vignettes/power_single_rate.Rmd |only ssutil-1.1.0/ssutil/DESCRIPTION | 8 - ssutil-1.1.0/ssutil/MD5 | 59 ++++++------ ssutil-1.1.0/ssutil/NAMESPACE | 35 ++++--- ssutil-1.1.0/ssutil/NEWS.md | 10 ++ ssutil-1.1.0/ssutil/R/power_events_rate.R |only ssutil-1.1.0/ssutil/README.md | 10 +- ssutil-1.1.0/ssutil/build/partial.rdb |binary ssutil-1.1.0/ssutil/build/vignette.rds |binary ssutil-1.1.0/ssutil/inst/doc/equivalence.Rmd | 18 +-- ssutil-1.1.0/ssutil/inst/doc/equivalence.html | 12 +- ssutil-1.1.0/ssutil/inst/doc/iz_binomial.Rmd | 30 +++--- ssutil-1.1.0/ssutil/inst/doc/iz_binomial.html | 36 +++---- ssutil-1.1.0/ssutil/inst/doc/iz_normal.Rmd | 50 +++++----- ssutil-1.1.0/ssutil/inst/doc/iz_normal.html | 54 +++++----- ssutil-1.1.0/ssutil/inst/doc/negative_binomial.Rmd | 15 +-- ssutil-1.1.0/ssutil/inst/doc/negative_binomial.html | 12 +- ssutil-1.1.0/ssutil/inst/doc/non_inferiority.R | 3 ssutil-1.1.0/ssutil/inst/doc/non_inferiority.Rmd | 4 ssutil-1.1.0/ssutil/inst/doc/non_inferiority.html | 1 ssutil-1.1.0/ssutil/inst/doc/power_rare_events.R |only ssutil-1.1.0/ssutil/inst/doc/power_rare_events.Rmd |only ssutil-1.1.0/ssutil/inst/doc/power_rare_events.html |only ssutil-1.1.0/ssutil/man/format.power_events_rate.Rd |only ssutil-1.1.0/ssutil/man/power_events_rate.Rd |only ssutil-1.1.0/ssutil/man/print.power_events_rate.Rd |only ssutil-1.1.0/ssutil/man/ssutil-package.Rd | 5 + ssutil-1.1.0/ssutil/tests/testthat/test-power_events_rate.R |only ssutil-1.1.0/ssutil/vignettes/equivalence.Rmd | 18 +-- ssutil-1.1.0/ssutil/vignettes/iz_binomial.Rmd | 30 +++--- ssutil-1.1.0/ssutil/vignettes/iz_normal.Rmd | 50 +++++----- ssutil-1.1.0/ssutil/vignettes/negative_binomial.Rmd | 15 +-- ssutil-1.1.0/ssutil/vignettes/non_inferiority.Rmd | 4 ssutil-1.1.0/ssutil/vignettes/power_rare_events.Rmd |only 37 files changed, 249 insertions(+), 230 deletions(-)
Title: Spatial Dynamic Panel Data Modeling
Description: Spatial model calculation for static and dynamic panel data models, weights matrix creation and Bayesian model comparison.
Bayesian model comparison methods were described by 'LeSage' (2014) <doi:10.1016/j.spasta.2014.02.002>.
The 'Lee'-'Yu' transformation approach is described in 'Yu', 'De Jong' and 'Lee' (2008) <doi:10.1016/j.jeconom.2008.08.002>, 'Lee' and 'Yu' (2010) <doi:10.1016/j.jeconom.2009.08.001> and 'Lee' and 'Yu' (2010) <doi:10.1017/S0266466609100099>.
Author: Rozeta Simonovska [aut, cre]
Maintainer: Rozeta Simonovska <simonovska.r@gmail.com>
Diff between SDPDmod versions 0.0.7 dated 2025-11-17 and 0.0.8 dated 2026-09-06
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NAMESPACE | 17 ++++++++++------- NEWS.md | 4 ++++ R/coef.SDPDm.R | 1 + R/isrownor.R | 6 +++++- build/vignette.rds |binary inst/doc/spatial_model.html | 14 +++++++------- 8 files changed, 38 insertions(+), 26 deletions(-)
Title: Self-Validated Ensemble Models with Lasso and Relaxed Elastic
Net Regression
Description: Implements the self-validated elastic-net and relaxed elastic-net ensemble modeling and multi-response optimization workflow described in Karl (2026) <doi:10.1016/j.chemolab.2026.105660>. Self-validated ensemble models (SVEM; Lemkus et al. (2021) <doi:10.1016/j.chemolab.2021.104439>) are fitted for small-sample design-of-experiments and related workflows using 'glmnet' (Friedman et al. (2010) <doi:10.18637/jss.v033.i01>). Fractional random-weight bootstraps with anti-correlated validation copies are used to tune penalty paths by validation-weighted AIC/BIC. Supports Gaussian and binomial responses, deterministic expansion helpers for shared factor spaces, prediction with bootstrap uncertainty, and a random-search optimizer that respects mixture constraints and combines multiple responses via desirability functions. Also includes a permutation-based whole-model test for Gaussian SVEM fits (Karl (2024) <doi:10.1016/j.chemolab.2024.105122>). Package code was drafte [...truncated...]
Author: Andrew T. Karl [cre, aut] ,
Robert Rigby [ctb] ,
Mikis Stasinopoulos [ctb, cph] ,
Fiona McElduff [ctb]
Maintainer: Andrew T. Karl <akarl@asu.edu>
Diff between SVEMnet versions 3.5.0 dated 2026-08-20 and 3.6.0 dated 2026-09-06
DESCRIPTION | 32 +++- MD5 | 81 ++++++------ NAMESPACE | 4 NEWS | 18 ++ R/SVEMnet-package.R | 42 +++++- R/SVEMnet.R | 9 + R/bigexp.R | 166 ++++++++++++++++++++----- R/forward_selection.R | 48 ++++--- R/glmnet_with_cv.R | 18 -- R/globals.R | 9 - R/predict.svem_lasso.R | 14 +- R/shasho_fit.R |only R/spec_limit_utility.R | 2 R/svem_random_table_multi.R | 58 ++++++-- R/svem_significance_test_parallel.R | 67 ++++++---- R/svem_thompson_batch.R | 13 + inst/CITATION | 6 inst/COPYRIGHTS |only man/SVEMnet-package.Rd | 46 ++++++ man/SVEMnet.Rd | 9 + man/bigexp_terms.Rd | 55 +++++++- man/forward_aicc.Rd | 5 man/glmnet_with_cv.Rd | 15 +- man/lipid_screen.Rd | 4 man/predict.svem_model.Rd | 10 + man/svem_forward.Rd | 5 man/svem_random_table_multi.Rd | 14 +- man/svem_score_random.Rd | 4 man/svem_significance_test_parallel.Rd | 23 ++- man/svem_thompson_batch.Rd | 17 +- man/svem_wmt_multi.Rd | 4 tests/testthat/fixtures |only tests/testthat/helper-data.R | 3 tests/testthat/test-bigexp-centering.R |only tests/testthat/test-cran-smoke.R |only tests/testthat/test-fit-and-predict.R | 27 ++-- tests/testthat/test-forward-selection.R | 53 +++++++ tests/testthat/test-mixture-boundaries.R |only tests/testthat/test-predict-ci.R | 2 tests/testthat/test-random-table-multi-basic.R | 44 +----- tests/testthat/test-random-table-multi.R | 22 +-- tests/testthat/test-release-hardening-3.4.0.R | 2 tests/testthat/test-shasho-fit.R |only tests/testthat/test-wmt-hardening-3.4.0.R | 4 tests/testthat/test_scoring.R | 26 --- 45 files changed, 667 insertions(+), 314 deletions(-)
Title: Distributions Compatible with Automatic Differentiation by
'RTMB'
Description: Extends the functionality of the 'RTMB' <https://kaskr.r-universe.dev/RTMB> package by providing a collection of non-standard probability distributions compatible with automatic differentiation (AD). While 'RTMB' enables flexible and efficient modelling, including random effects, its built-in support is limited to standard distributions. The package adds additional AD-compatible distributions, broadening the range of models that can be implemented and estimated using 'RTMB'. Automatic differentiation and Laplace approximation are described in Kristensen et al. (2016) <doi:10.18637/jss.v070.i05>.
Author: Jan-Ole Fischer [aut, cre]
Maintainer: Jan-Ole Fischer <jan-ole.fischer@mailbox.org>
Diff between RTMBdist versions 1.0.6 dated 2026-08-21 and 1.1.0 dated 2026-09-06
RTMBdist-1.0.6/RTMBdist/LICENSE |only RTMBdist-1.1.0/RTMBdist/DESCRIPTION | 10 - RTMBdist-1.1.0/RTMBdist/MD5 | 75 +++++++----- RTMBdist-1.1.0/RTMBdist/NAMESPACE | 34 ++--- RTMBdist-1.1.0/RTMBdist/NEWS.md | 26 ++++ RTMBdist-1.1.0/RTMBdist/R/aaa_utils.R | 96 ++++++++++++++++ RTMBdist-1.1.0/RTMBdist/R/bccg.R | 43 ++++++- RTMBdist-1.1.0/RTMBdist/R/bcpe.R | 52 +++++++- RTMBdist-1.1.0/RTMBdist/R/bct.R | 45 +++++-- RTMBdist-1.1.0/RTMBdist/R/bell.R |only RTMBdist-1.1.0/RTMBdist/R/bell2.R |only RTMBdist-1.1.0/RTMBdist/R/betaprime.R | 9 + RTMBdist-1.1.0/RTMBdist/R/exgauss.R | 53 ++++++++ RTMBdist-1.1.0/RTMBdist/R/gengamma.R | 4 RTMBdist-1.1.0/RTMBdist/R/genpois.R | 87 +++++++++++--- RTMBdist-1.1.0/RTMBdist/R/jsu.R |only RTMBdist-1.1.0/RTMBdist/R/pareto.R | 27 +++- RTMBdist-1.1.0/RTMBdist/R/powerexp.R | 64 ++++++++-- RTMBdist-1.1.0/RTMBdist/R/skewt.R | 2 RTMBdist-1.1.0/RTMBdist/R/skewt2.R | 2 RTMBdist-1.1.0/RTMBdist/inst/doc/Examples.html | 2 RTMBdist-1.1.0/RTMBdist/inst/doc/distlist.Rmd | 8 + RTMBdist-1.1.0/RTMBdist/inst/doc/distlist.html | 13 ++ RTMBdist-1.1.0/RTMBdist/man/bccg.Rd | 10 + RTMBdist-1.1.0/RTMBdist/man/bcpe.Rd | 10 + RTMBdist-1.1.0/RTMBdist/man/bct.Rd | 10 + RTMBdist-1.1.0/RTMBdist/man/bell.Rd |only RTMBdist-1.1.0/RTMBdist/man/bell2.Rd |only RTMBdist-1.1.0/RTMBdist/man/exgauss.Rd | 11 + RTMBdist-1.1.0/RTMBdist/man/gengamma.Rd | 5 RTMBdist-1.1.0/RTMBdist/man/genpois.Rd | 9 + RTMBdist-1.1.0/RTMBdist/man/jsu.Rd |only RTMBdist-1.1.0/RTMBdist/man/lambertW.Rd |only RTMBdist-1.1.0/RTMBdist/man/pareto.Rd | 7 - RTMBdist-1.1.0/RTMBdist/man/powerexp.Rd | 10 + RTMBdist-1.1.0/RTMBdist/man/skewt.Rd | 2 RTMBdist-1.1.0/RTMBdist/man/skewt2.Rd | 2 RTMBdist-1.1.0/RTMBdist/tests/testthat/test-bct.R | 9 + RTMBdist-1.1.0/RTMBdist/tests/testthat/test-bell.R |only RTMBdist-1.1.0/RTMBdist/tests/testthat/test-bell2.R |only RTMBdist-1.1.0/RTMBdist/tests/testthat/test-genpois.R | 14 ++ RTMBdist-1.1.0/RTMBdist/tests/testthat/test-jsu.R |only RTMBdist-1.1.0/RTMBdist/tests/testthat/test-pareto.R |only RTMBdist-1.1.0/RTMBdist/tests/testthat/test-recycling.R |only RTMBdist-1.1.0/RTMBdist/vignettes/distlist.Rmd | 8 + 45 files changed, 620 insertions(+), 139 deletions(-)
Title: Various Methods for the Two Sample Problem
Description: The routine twosample_test() in this package runs the
two sample test using various test statistic. The p values are
found via permutation or large sample theory. The routine twosample_power() allows the
calculation of the power in various cases, and plot_power() draws the corresponding power graphs.
The routine run.studies allows a user to quickly study the power of a new method and
how it compares to some of the standard ones.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between R2sample versions 4.1.0 dated 2025-06-16 and 5.0.0 dated 2026-09-06
R2sample-4.1.0/R2sample/R/signif.digits.R |only R2sample-4.1.0/R2sample/data/power_studies_results.rda |only R2sample-4.1.0/R2sample/man/case.studies.Rd |only R2sample-4.1.0/R2sample/man/power_studies_results.Rd |only R2sample-4.1.0/R2sample/man/signif.digits.Rd |only R2sample-5.0.0/R2sample/DESCRIPTION | 11 R2sample-5.0.0/R2sample/MD5 | 73 - R2sample-5.0.0/R2sample/NAMESPACE | 8 R2sample-5.0.0/R2sample/NEWS.md | 8 R2sample-5.0.0/R2sample/R/RcppExports.R | 4 R2sample-5.0.0/R2sample/R/case.studies.R | 974 +++++++---------- R2sample-5.0.0/R2sample/R/data.R | 20 R2sample-5.0.0/R2sample/R/extra.R | 3 R2sample-5.0.0/R2sample/R/myTS.R |only R2sample-5.0.0/R2sample/R/powerR.R | 39 R2sample-5.0.0/R2sample/R/power_newtest.R | 29 R2sample-5.0.0/R2sample/R/run.studies.R | 199 +-- R2sample-5.0.0/R2sample/R/signif_digits.R |only R2sample-5.0.0/R2sample/R/twosample_power.R | 55 R2sample-5.0.0/R2sample/R/twosample_test.R | 23 R2sample-5.0.0/R2sample/R/use_parallel.R |only R2sample-5.0.0/R2sample/build/vignette.rds |binary R2sample-5.0.0/R2sample/data/funs_list.rda |only R2sample-5.0.0/R2sample/data/param.rda |only R2sample-5.0.0/R2sample/data/power_study.rda |only R2sample-5.0.0/R2sample/inst/doc/R2sample.R | 44 R2sample-5.0.0/R2sample/inst/doc/R2sample.Rmd | 147 +- R2sample-5.0.0/R2sample/inst/doc/R2sample.html | 239 ++-- R2sample-5.0.0/R2sample/inst/legacy-tests |only R2sample-5.0.0/R2sample/man/R2sample-package.Rd | 5 R2sample-5.0.0/R2sample/man/case_studies.Rd |only R2sample-5.0.0/R2sample/man/funs_list.Rd |only R2sample-5.0.0/R2sample/man/myTS_cont.Rd |only R2sample-5.0.0/R2sample/man/myTS_disc.Rd |only R2sample-5.0.0/R2sample/man/param.Rd |only R2sample-5.0.0/R2sample/man/powerC.Rd | 4 R2sample-5.0.0/R2sample/man/power_newtest.Rd | 6 R2sample-5.0.0/R2sample/man/power_study.Rd |only R2sample-5.0.0/R2sample/man/run.studies.Rd | 54 R2sample-5.0.0/R2sample/man/signif_digits.Rd |only R2sample-5.0.0/R2sample/man/twosample_power.Rd | 6 R2sample-5.0.0/R2sample/man/use_parallel.Rd |only R2sample-5.0.0/R2sample/src/powerC.cpp | 21 R2sample-5.0.0/R2sample/tests |only R2sample-5.0.0/R2sample/vignettes/R2sample.Rmd | 147 +- 45 files changed, 1084 insertions(+), 1035 deletions(-)
Title: Miscellaneous Time Series Filters
Description: The mFilter package implements several time series filters useful
for smoothing and extracting trend and cyclical components of a
time series. The routines are commonly used in economics and
finance, however they should also be interest to other areas.
Currently, Christiano-Fitzgerald, Baxter-King,
Hodrick-Prescott, Butterworth, and trigonometric regression
filters are included in the package.
Author: Mehmet Balcilar [aut, cre]
Maintainer: Mehmet Balcilar <mehmet@mbalcilar.net>
Diff between mFilter versions 0.1-5 dated 2019-06-04 and 0.1-8 dated 2026-09-06
mFilter-0.1-5/mFilter/data/unemp.R |only mFilter-0.1-8/mFilter/DESCRIPTION | 18 + mFilter-0.1-8/mFilter/MD5 | 16 - mFilter-0.1-8/mFilter/NAMESPACE | 2 mFilter-0.1-8/mFilter/NEWS.md | 13 + mFilter-0.1-8/mFilter/R/bnfilter.R |only mFilter-0.1-8/mFilter/R/mFilter.R | 287 +++++++++++++-------------- mFilter-0.1-8/mFilter/data/unemp.rda |only mFilter-0.1-8/mFilter/man/bnfilter.Rd |only mFilter-0.1-8/mFilter/man/mFilter-package.Rd | 26 ++ mFilter-0.1-8/mFilter/man/mFilter.Rd | 13 - 11 files changed, 208 insertions(+), 167 deletions(-)
Title: Fitting Joint Mean and Dispersion Effects Models
Description: Joint mean and dispersion effects models fit the mean and dispersion parameters of a response variable by two separate linear models, the mean and dispersion submodels, simultaneously. It also allows the users to choose either the deviance or the Pearson residuals as the response variable of the dispersion submodel. Furthermore, the package provides the possibility to nest the submodels in one another, if one of the parameters has significant explanatory power on the other. Wu & Li (2016) <doi:10.1016/j.csda.2016.04.015>.
Author: Ka Yui Karl Wu [aut, cre]
Maintainer: Ka Yui Karl Wu <karlwuky@suss.edu.sg>
Diff between jmdem versions 1.0.1 dated 2020-03-04 and 1.0.2 dated 2026-09-06
jmdem-1.0.1/jmdem/R/jmdem_1.0.1.R |only jmdem-1.0.2/jmdem/DESCRIPTION | 22 +++++++++++++++++----- jmdem-1.0.2/jmdem/MD5 | 28 ++++++++++++++-------------- jmdem-1.0.2/jmdem/R/jmdem_1.0.2.R |only jmdem-1.0.2/jmdem/man/anova.jmdem.Rd | 2 +- jmdem-1.0.2/jmdem/man/jmdem.Rd | 2 +- jmdem-1.0.2/jmdem/man/jmdem.control.Rd | 4 ++-- jmdem-1.0.2/jmdem/man/jmdem.sim.Rd | 2 +- jmdem-1.0.2/jmdem/man/jmdem.summaries.Rd | 2 +- jmdem-1.0.2/jmdem/man/model.matrix.jmdem.Rd | 2 +- jmdem-1.0.2/jmdem/man/predict.jmdem.Rd | 2 +- jmdem-1.0.2/jmdem/man/score.jmdem.Rd | 2 +- jmdem-1.0.2/jmdem/man/stat.anova.jmdem.Rd | 2 +- jmdem-1.0.2/jmdem/man/summary.jmdem.Rd | 2 +- jmdem-1.0.2/jmdem/man/summary.jmdem.sim.Rd | 2 +- jmdem-1.0.2/jmdem/man/update.jmdem.Rd | 2 +- 16 files changed, 44 insertions(+), 32 deletions(-)
Title: Interface to the Google 'FarmHash' Family of Hash Functions
Description: The Google 'FarmHash' family of hash functions is used by
the Google 'BigQuery' data warehouse via the 'FARM_FINGERPRINT'
function. This package permits to calculate these hash digest
fingerprints directly from R, and uses the included 'FarmHash'
files written by G. Pike and copyrighted by Google, Inc.
Author: Dirk Eddelbuettel [aut, cre] ,
Geoff Pike [aut] ,
Google, Inc. [cph]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppFarmHash versions 0.0.3 dated 2023-09-09 and 0.0.4 dated 2026-09-06
ChangeLog | 30 ++++++++++++++++++++++++++++++ DESCRIPTION | 19 +++++++++++++------ MD5 | 10 +++++----- README.md | 7 ++++--- build/partial.rdb |binary inst/NEWS.Rd | 6 ++++++ 6 files changed, 58 insertions(+), 14 deletions(-)
Title: Harrell Miscellaneous
Description: Contains many functions useful for data
analysis, high-level graphics, utility operations, functions for
computing sample size and power, simulation, importing and annotating datasets,
imputing missing values, advanced table making, variable clustering,
character string manipulation, conversion of R objects to Typst, LaTeX, and html code,
recoding variables, caching, simplified parallel computing, encrypting and decrypting data using a safe workflow, general moving window statistical estimation, and assistance in interpreting principal component analysis.
Author: Frank E Harrell Jr [aut, cre] ,
Cole Beck [ctb],
Charles Dupont [ctb]
Maintainer: Frank E Harrell Jr <fh@fharrell.com>
Diff between Hmisc versions 5.2-6 dated 2026-06-19 and 5.3-0 dated 2026-09-06
DESCRIPTION | 12 - MD5 | 41 ++- NAMESPACE | 9 NEWS | 15 + R/Misc.s | 437 ++++++++------------------------------ R/describe.s | 552 ++++++++++++++++++++++++++++++++++++++---------- R/html.s | 278 +++++++++++++++++++++--- R/knitrSet.r |only R/latex.s | 256 +++++++++++----------- R/mChoice.s | 142 +++++++++++- R/pMedian.r | 12 - R/plotly.r |only R/rcspline.restate.s | 89 +++++-- R/typst.r |only R/typstDotchart.r |only man/Misc.Rd | 41 +-- man/describe.Rd | 44 ++- man/knitrSet.Rd | 231 ++++++++++++-------- man/pMedian.Rd | 2 man/plotlyParm.Rd |only man/plotlySave.Rd |only man/plotp.Rd |only man/rcspline.restate.Rd | 6 man/typstAsis.Rd |only man/typstDotchart.Rd |only man/typstFunctions.Rd |only man/typstTranslate.Rd |only 27 files changed, 1362 insertions(+), 805 deletions(-)
Title: Data Visualization Tools for Statistical Analysis Results
Description: Unified plotting tools for statistics commonly used, such as GLM,
time series, PCA families, clustering and survival analysis. The package offers
a single plotting interface for these analysis results and plots in a unified
style using 'ggplot2'.
Author: Masaaki Horikoshi [aut],
Yuan Tang [aut, cre] ,
Austin Dickey [ctb],
Matthias Grenie [ctb],
Ryan Thompson [ctb],
Luciano Selzer [ctb],
Dario Strbenac [ctb],
Kirill Voronin [ctb],
Damir Pulatov [ctb],
Emik Lin [ctb]
Maintainer: Yuan Tang <terrytangyuan@gmail.com>
Diff between ggfortify versions 0.4.22 dated 2026-08-24 and 0.4.23 dated 2026-09-06
DESCRIPTION | 14 +++--- MD5 | 20 ++++---- NEWS.md | 7 +++ R/fortify_stats_density.R | 22 +++++++-- R/fortify_surv.R | 36 ++++++++++++++- R/tslib.R | 14 ++++-- man/autoplot.survfit.Rd | 8 +++ man/ggfreqplot.Rd | 5 +- tests/testthat/test-stats-density.R | 31 +++++++++++++ tests/testthat/test-surv.R | 84 ++++++++++++++++++++++++++++++++++++ tests/testthat/test-tslib.R | 22 +++++++++ 11 files changed, 233 insertions(+), 30 deletions(-)
Title: Data Augmentation for Private Posterior Estimation
Description: A data augmentation based sampler for conducting privacy-aware Bayesian inference. The dapper_sample()
function takes an existing sampler as input and automatically constructs
a privacy-aware sampler. The process of constructing a sampler is simplified
through the specification of four independent modules, allowing for
easy comparison between different privacy mechanisms by only swapping
out the relevant modules. Probability mass functions
for the discrete Gaussian and discrete Laplacian are provided to facilitate
analyses dealing with privatized count data. The output of dapper_sample()
can be analyzed using many of the same tools from the 'rstan' ecosystem. For methodological details
on the sampler see Ju et al. (2022) <doi:10.48550/arXiv.2206.00710>,
and for details on the discrete Gaussian and discrete Laplacian distributions see
Canonne et al. (2020) <doi:10.48550/arXiv.2004.00010>.
Author: Kevin Eng [aut, cre, cph]
Maintainer: Kevin Eng <kevine1221@gmail.com>
Diff between dapper versions 1.1.0 dated 2026-02-02 and 1.1.1 dated 2026-09-06
DESCRIPTION | 9 ++++---- MD5 | 34 ++++++++++++++++++-------------- NEWS.md | 12 +++++++++++ R/dapper_sample.R | 15 +++++++------- R/discrete_gaussian.R | 10 ++++----- R/discrete_laplace.R | 7 +++--- R/privacy_class.R | 26 ++++++++++++++++++------ README.md | 14 +++++++++++-- build/partial.rdb |binary build/vignette.rds |only inst |only man/dapper_sample.Rd | 15 +++++++------- man/ddlaplace.Rd | 5 ++-- man/ddnorm.Rd | 6 ++--- man/new_privacy.Rd | 25 +++++++++++++++++------ tests/testthat/test-discrete_gaussian.R | 15 ++++++++++++++ tests/testthat/test-discrete_laplace.R | 17 ++++++++++++++++ vignettes |only 18 files changed, 151 insertions(+), 59 deletions(-)
Title: Interface R to MPFR - Multiple Precision Floating-Point Reliable
Description: Arithmetic (via S4 classes and methods) for
arbitrary precision floating point numbers, including transcendental
("special") functions. To this end, the package interfaces to
the 'LGPL' licensed 'MPFR' (Multiple Precision Floating-Point Reliable) Library
which itself is based on the 'GMP' (GNU Multiple Precision) Library.
Author: Martin Maechler [aut, cre] ,
Richard M. Heiberger [ctb] , *Bin, *Dec),
John C. Nash [ctb] , origin of unirootR),
Hans W. Borchers [ctb] ; origin of
hjkMpfr),
Mikael Jagan [ctb]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between Rmpfr versions 1.1-2 dated 2025-10-27 and 1.1-3 dated 2026-09-06
DESCRIPTION | 12 ++++----- MD5 | 40 ++++++++++++++++----------------- build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 10 +++++++- inst/doc/Maechler_useR_2011-abstr.R | 2 - inst/doc/Maechler_useR_2011-abstr.Rnw | 6 ++-- inst/doc/Maechler_useR_2011-abstr.pdf |binary inst/doc/Rmpfr-pkg.R | 4 --- inst/doc/Rmpfr-pkg.Rnw | 20 ++++++++-------- inst/doc/Rmpfr-pkg.pdf |binary inst/doc/log1mexp-note.R | 2 - inst/doc/log1mexp-note.Rnw | 8 +++--- inst/doc/log1mexp-note.pdf |binary man/mpfr-utils.Rd | 4 +-- man/utils.Rd | 11 ++++----- vignettes/Maechler_useR_2011-abstr.Rnw | 6 ++-- vignettes/Rmpfr-pkg.Rnw | 20 ++++++++-------- vignettes/Rmpfr.bib | 19 +++++++-------- vignettes/log1mexp-note.Rnw | 8 +++--- vignettes/log1mexp.bib | 8 +++--- 21 files changed, 90 insertions(+), 90 deletions(-)
Title: Fast Algorithms to Bootstrap Receiver Operating Characteristics
Curves
Description: Implements a very fast C++ algorithm to quickly bootstrap receiver
operating characteristics (ROC) curves and derived performance metrics,
including the area under the curve (AUC) and the partial area under the curve as well as
the true and false positive rate. The analysis of paired receiver operating curves is supported as well,
so that a comparison of two predictors is possible. You can also plot the
results and calculate confidence intervals. On a typical desktop computer the time needed for
the calculation of 100000 bootstrap replicates given 500 observations requires time on the
order of magnitude of one second.
Author: Erik Peter [aut, cre]
Maintainer: Erik Peter <jerikpeter@googlemail.com>
Diff between fbroc versions 0.4.1 dated 2019-03-24 and 0.5.0 dated 2026-09-06
DESCRIPTION | 16 ++++++------ MD5 | 53 +++++++++++++++++++++--------------------- NAMESPACE | 1 NEWS.md | 10 ++++++- R/fbroc.R | 4 ++- R/fbroc.helper.functions.R | 17 +++++++------ R/fbroc.methods.R | 10 +++---- R/fbroc.paired.R | 14 +++++------ R/fbroc.paired.methods.R | 10 +++---- R/fbroc.perf.R | 2 - R/fbroc.roc.R | 13 +++------- R/perf.paired.roc.R | 2 - man/boot.paired.roc.Rd | 11 +++++++- man/boot.roc.Rd | 10 ++++++- man/conf.fbroc.paired.roc.Rd | 3 -- man/conf.fbroc.roc.Rd | 3 -- man/fbroc-package.Rd |only man/fbroc.Rd | 2 - man/perf.fbroc.paired.roc.Rd | 13 +++++++--- man/perf.fbroc.roc.Rd | 13 +++++++--- man/plot.fbroc.conf.Rd | 5 +-- man/plot.fbroc.conf.paired.Rd | 3 -- man/plot.fbroc.paired.roc.Rd | 20 +++++++++++---- man/plot.fbroc.perf.Rd | 13 +++++++--- man/plot.fbroc.perf.paired.Rd | 13 +++++++--- man/plot.fbroc.roc.Rd | 17 ++++++++++--- man/roc.examples.Rd | 6 +++- src/RcppExports.cpp | 5 +++ 28 files changed, 178 insertions(+), 111 deletions(-)
Title: R Interface to PXWEB APIs
Description: Generic interface for the PX-Web/PC-Axis API. The
PX-Web/PC-Axis API is used by organizations such as Statistics Sweden
and Statistics Finland to disseminate data. The R package can interact
with all PX-Web/PC-Axis APIs to fetch information about the data
hierarchy, extract metadata and extract and parse statistics to R
data.frame format. PX-Web is a solution to disseminate PC-Axis data
files in dynamic tables on the web. Since 2013 PX-Web contains an API
to disseminate PC-Axis files.
Author: Mans Magnusson [aut, cre] ,
Markus Kainu [aut],
Janne Huovari [aut],
Leo Lahti [aut] ,
Love Hansson [ctb],
Eydun Nielsen [ctb],
Bo Werth [ctb],
Thomas Runarsson [ctb],
Torbjoern Lindquist [ctb],
Palmar Thorsteinsson [ctb],
Pyry Kantanen [ctb],
Sebasti [...truncated...]
Maintainer: Mans Magnusson <mons.magnusson@gmail.com>
Diff between pxweb versions 0.17.0 dated 2024-01-29 and 0.19.2 dated 2026-09-06
DESCRIPTION | 17 MD5 | 233 ++++- NAMESPACE | 19 NEWS.md | 25 R/onAttach.R | 2 R/pxweb-package.R | 3 R/pxweb.R | 7 R/pxweb_add_api_subpath.R | 32 R/pxweb_add_call.R | 4 R/pxweb_add_config.R | 40 R/pxweb_api_catalogue.R | 13 R/pxweb_as_data_frame.R | 91 ++ R/pxweb_as_json.R | 7 R/pxweb_build_pxweb_urls.R | 40 R/pxweb_c.R | 80 + R/pxweb_cite.R | 27 R/pxweb_codelists.R |only R/pxweb_data.R | 39 R/pxweb_data_comments.R | 238 +++++ R/pxweb_data_jsonstat.R | 80 + R/pxweb_get.R | 136 +++ R/pxweb_interactive.R | 14 R/pxweb_metadata.R | 121 ++ R/pxweb_parse_response.R | 71 + R/pxweb_query.R | 229 +++++ R/pxweb_query_v2_helpers.R |only R/pxweb_search.R |only R/pxweb_split_query.R | 1 R/pxweb_table_response_v2.R |only R/pxweb_test_api_endpoint.R | 157 +++ R/pxweb_version.R |only build/vignette.rds |binary inst/CITATION | 30 inst/doc/pxweb.R | 306 ++++--- inst/doc/pxweb.Rmd | 172 +++- inst/doc/pxweb.html | 267 ++++-- inst/extdata/api.json | 422 ++++++---- inst/extdata/examples/json_big_query_example.json | 103 -- inst/extdata/examples/statfin_vaenn_139e_query.json |only inst/extdata/test_files/json_queries/json_full_test_query.json | 8 man/assert_pxweb_data_jsonstat2.Rd |only man/assert_pxweb_metadata_response_v2.Rd |only man/assert_pxweb_query_v2.Rd |only man/assert_pxweb_table_response_v2.Rd |only man/build_pxweb_v2_api_subpath.Rd |only man/http_was_redirected.Rd | 2 man/is_pxweb_config_response.Rd | 4 man/is_pxweb_query_selection.Rd |only man/pxweb-package.Rd | 33 man/pxweb_advanced_get.Rd | 4 man/pxweb_as_data_frame.Rd | 39 man/pxweb_as_json.Rd | 3 man/pxweb_audit_api_catalogue_config.Rd |only man/pxweb_cite.Rd | 2 man/pxweb_codelists.Rd |only man/pxweb_data_colnames.Rd | 6 man/pxweb_data_comments.Rd | 3 man/pxweb_data_dim.Rd | 6 man/pxweb_data_jsonstat2.Rd |only man/pxweb_data_v2.Rd |only man/pxweb_data_v2_c.Rd |only man/pxweb_data_v2_column_comment.Rd |only man/pxweb_data_v2_dataset_note_comment.Rd |only man/pxweb_data_v2_note_text.Rd |only man/pxweb_data_v2_obs_comment.Rd |only man/pxweb_data_v2_status_comments.Rd |only man/pxweb_data_v2_value_comment.Rd |only man/pxweb_detect_version.Rd |only man/pxweb_get.Rd | 23 man/pxweb_get_data.Rd | 6 man/pxweb_interactive.Rd | 13 man/pxweb_metadata_v2.Rd |only man/pxweb_metadata_v2_value_texts.Rd |only man/pxweb_metadata_v2_values.Rd |only man/pxweb_query_as_v2.Rd |only man/pxweb_query_dim.Rd | 4 man/pxweb_query_helpers.Rd |only man/pxweb_query_list_as_v2.Rd |only man/pxweb_query_selection.Rd |only man/pxweb_query_selection_extra_query.Rd |only man/pxweb_query_v2.Rd |only man/pxweb_query_v2_extra_query.Rd |only man/pxweb_query_v2_has_codelist.Rd |only man/pxweb_query_v2_request.Rd |only man/pxweb_query_v2_selection_type.Rd |only man/pxweb_query_value_as_v2.Rd |only man/pxweb_response_v2_output_format.Rd |only man/pxweb_search.Rd |only man/pxweb_search_api_version.Rd |only man/pxweb_search_chr.Rd |only man/pxweb_search_empty_v1.Rd |only man/pxweb_search_link.Rd |only man/pxweb_search_num.Rd |only man/pxweb_search_parse_v1.Rd |only man/pxweb_search_parse_v2.Rd |only man/pxweb_search_path_parts.Rd |only man/pxweb_search_request.Rd |only man/pxweb_search_response.Rd |only man/pxweb_search_trim_slash.Rd |only man/pxweb_search_url.Rd |only man/pxweb_search_v1_table_url.Rd |only man/pxweb_selection.Rd |only man/pxweb_table_response_v2.Rd |only man/pxweb_v2_data_query_params.Rd |only man/pxweb_v2_data_request.Rd |only man/pxweb_v2_data_value_codes_query.Rd |only man/pxweb_v2_output_file_extension.Rd |only man/pxweb_v2_table_id.Rd |only man/pxweb_v2_table_metadata_url.Rd |only tests/mock |only tests/testthat/api.scb.se |only tests/testthat/log_pxweb_api_http_calls.txt | 220 +---- tests/testthat/raw.githubusercontent.com/rOpenGov/pxweb/master/inst/extdata/api.json.txt | 420 +++++---- tests/testthat/setup.R | 55 + tests/testthat/statistikdatabasen.scb.se |only tests/testthat/test-pxweb_add_call.R |only tests/testthat/test-pxweb_api_catalogue.R | 54 + tests/testthat/test-pxweb_api_paths.R | 15 tests/testthat/test-pxweb_as_dataframe.R | 8 tests/testthat/test-pxweb_comments_codelists_unit.R |only tests/testthat/test-pxweb_config_helpers.R |only tests/testthat/test-pxweb_constructor.R | 12 tests/testthat/test-pxweb_data_comments.R | 14 tests/testthat/test-pxweb_data_jsonstat2.R |only tests/testthat/test-pxweb_get.R | 170 ++-- tests/testthat/test-pxweb_interactive.R | 37 tests/testthat/test-pxweb_live_scb.R |only tests/testthat/test-pxweb_metadata_response_v2.R |only tests/testthat/test-pxweb_query.R | 88 +- tests/testthat/test-pxweb_query_v2_helpers.R |only tests/testthat/test-pxweb_search.R |only tests/testthat/test-pxweb_table_response_v2.R |only tests/testthat/test-pxweb_test_api.R | 93 ++ tests/testthat/test-pxweb_test_api_endpoint_unit.R |only tests/testthat/test-pxweb_v2.R |only tests/testthat/test_data/pxweb_metadata_response_v2.rds |only tests/testthat/test_data/pxweb_table_response_v2.rds |only vignettes/pxweb.Rmd | 172 +++- 138 files changed, 3416 insertions(+), 1124 deletions(-)
Title: Density, Probability, Quantile ('DPQ') Computations
Description: Computations for approximations and alternatives for the 'DPQ'
(Density (pdf), Probability (cdf) and Quantile) functions for probability
distributions in R.
Primary focus is on (central and non-central) beta, gamma and related
distributions such as the chi-squared, F, and t.
--
For several distribution functions, provide functions implementing formulas from
Johnson, Kotz, and Kemp (1992) <doi:10.1002/bimj.4710360207> and
Johnson, Kotz, and Balakrishnan (1995) for discrete or continuous
distributions respectively.
This is for the use of researchers in these numerical approximation
implementations, notably for my own use in order to improve standard
R pbeta(), qgamma(), ..., etc: {'"dpq"'-functions}.
Author: Martin Maechler [aut, cre] ,
Morten Welinder [ctb] ),
Wolfgang Viechtbauer [ctb] , 2002),
Ross Ihaka [ctb] ,
Marius Hofert [ctb] , lssum),
R-core [ctb] ,
R Foundation [cph]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between DPQ versions 0.6-1 dated 2025-10-13 and 0.6-2 dated 2026-09-06
DESCRIPTION | 12 ++-- MD5 | 61 ++++++++++++------------ NAMESPACE | 8 +-- R/beta-fns.R | 49 +++++++++++++------ R/qgamma-fn.R | 4 - build/partial.rdb |binary build/vignette.rds |binary inst/NEWS.Rd | 29 +++++++++++ inst/doc/Noncentral-Chisq.R | 2 inst/doc/Noncentral-Chisq.pdf |binary inst/doc/comp-beta.pdf |binary inst/doc/log1pmx-etc.R | 2 inst/doc/log1pmx-etc.pdf |binary inst/doc/qnorm-asymp.R | 62 ++++++++++++++---------- inst/doc/qnorm-asymp.Rnw | 30 ++++++++--- inst/doc/qnorm-asymp.pdf |binary man/b_chi.Rd | 5 + man/dnt.Rd | 26 +++++----- man/laBeta.Rd |only man/pnbeta.Rd | 3 - man/pnchisqAppr.Rd | 6 +- man/pnchisqWienergerm.Rd | 16 +++--- man/pnt.Rd | 4 - man/qgammaAppr.Rd | 20 ++++--- src/DPQpkg.h | 8 +-- src/pnchisq-it.c | 2 src/ppois-direct.c | 55 ++++++++++++--------- tests/ppois-ex.R | 106 ++++++++++++++++++++++++++++++------------ tests/wienergerm_nchisq.R | 9 +++ vignettes/R-numerics.bib | 12 ++++ vignettes/qnorm-asymp.Rnw | 30 ++++++++--- vignettes/qnorm-litt.bib | 14 ++--- 32 files changed, 369 insertions(+), 206 deletions(-)
Title: EM by the Method of Weights for Incomplete Categorical Data in
Generlized Linear Models
Description: Provides an estimator for generalized linear models with incomplete
data for discrete covariates. The estimation is based on the EM algorithm by the
method of weights by Ibrahim (1990) <DOI:10.2307/2290013>.
Author: Lorenz Brachtendorf [aut],
Stephan Dlugosz [aut, cre]
Maintainer: Stephan Dlugosz <stephan.dlugosz@googlemail.com>
Diff between icdGLM versions 1.0.0 dated 2016-07-21 and 1.0.2 dated 2026-09-06
DESCRIPTION | 23 +++++-- MD5 | 23 +++---- R/expand_data.R | 14 ++-- R/icdglm.R | 2 R/icdglm.fit.R | 20 +++--- R/summary.icdglm.R | 2 README.md |only man/Leukemia.data.Rd | 47 +++++++------- man/TLI.data.Rd | 49 +++++++-------- man/expand_data.Rd | 81 ++++++++++++------------- man/icdglm.Rd | 155 ++++++++++++++++++++++++------------------------- man/icdglm.fit.Rd | 157 ++++++++++++++++++++++++-------------------------- man/summary.icdglm.Rd | 103 ++++++++++++++++---------------- 13 files changed, 342 insertions(+), 334 deletions(-)
Title: Simulation and Estimation of Multi-State Discrete-Time
Semi-Markov and Markov Models
Description: Performs parametric and non-parametric estimation and simulation for multi-state discrete-time semi-Markov processes.
For the parametric estimation, several discrete distributions are considered for the sojourn times: Uniform, Geometric, Poisson, Discrete Weibull and Negative Binomial. The non-parametric estimation concerns the sojourn time distributions, where no assumptions are done on the shape of distributions.
Moreover, the estimation can be done on the basis of one or several sample paths, with or without censoring at the beginning or/and at the end of the sample paths. The implemented methods are described in Barbu, V.S., Limnios, N. (2008) <doi:10.1007/978-0-387-73173-5>, Barbu, V.S., Limnios, N. (2008) <doi:10.1080/10485250701261913> and
Trevezas, S., Limnios, N. (2011) <doi:10.1080/10485252.2011.555543>.
Estimation and simulation of discrete-time k-th order Markov chains are also considered.
Author: Vlad Stefan Barbu [aut],
Caroline Berard [aut],
Dominique Cellier [aut],
Mathilde Sautreuil [aut],
Nicolas Vergne [aut, cre]
Maintainer: Nicolas Vergne <nicolas.vergne@univ-rouen.fr>
Diff between SMM versions 1.0.2 dated 2020-01-31 and 1.0.3 dated 2026-09-06
SMM-1.0.2/SMM/inst/doc/SMM-manual.pdf |only SMM-1.0.3/SMM/DESCRIPTION | 27 ++++++++++++++++++++------- SMM-1.0.3/SMM/MD5 | 20 ++++++++++---------- SMM-1.0.3/SMM/NEWS | 2 +- SMM-1.0.3/SMM/build/vignette.rds |binary SMM-1.0.3/SMM/inst/doc/smm.Rnw | 16 ++++++++-------- SMM-1.0.3/SMM/inst/doc/smm.pdf |binary SMM-1.0.3/SMM/man/estimMk.Rd | 2 +- SMM-1.0.3/SMM/man/estimSM.Rd | 2 +- SMM-1.0.3/SMM/vignettes/auto |only SMM-1.0.3/SMM/vignettes/smm.Rnw | 16 ++++++++-------- SMM-1.0.3/SMM/vignettes/smm.bib | 8 ++++---- 12 files changed, 53 insertions(+), 40 deletions(-)
Title: Efficient Rolling / Windowed Operations
Description: Provides fast and efficient routines for
common rolling / windowed operations. Routines for the
efficient computation of windowed mean, median,
sum, product, minimum, maximum, standard deviation
and variance are provided.
Author: Kevin Ushey [aut, cre]
Maintainer: Kevin Ushey <kevinushey@gmail.com>
Diff between RcppRoll versions 0.3.2 dated 2026-03-28 and 0.4.0 dated 2026-09-06
RcppRoll-0.3.2/RcppRoll/R/RcppExports.R |only RcppRoll-0.3.2/RcppRoll/man/RcppRoll.Rd |only RcppRoll-0.3.2/RcppRoll/src/RcppExports.cpp |only RcppRoll-0.4.0/RcppRoll/DESCRIPTION | 19 RcppRoll-0.4.0/RcppRoll/MD5 | 37 RcppRoll-0.4.0/RcppRoll/NAMESPACE | 4 RcppRoll-0.4.0/RcppRoll/NEWS.md | 109 RcppRoll-0.4.0/RcppRoll/R/RcppRoll-package.R | 24 RcppRoll-0.4.0/RcppRoll/R/RcppRoll.R | 285 - RcppRoll-0.4.0/RcppRoll/R/threads.R |only RcppRoll-0.4.0/RcppRoll/R/utils.R |only RcppRoll-0.4.0/RcppRoll/R/zzz.R |only RcppRoll-0.4.0/RcppRoll/README.md | 33 RcppRoll-0.4.0/RcppRoll/man/RcppRoll-exports.Rd | 372 +- RcppRoll-0.4.0/RcppRoll/man/RcppRoll-package.Rd |only RcppRoll-0.4.0/RcppRoll/man/roll_threads.Rd |only RcppRoll-0.4.0/RcppRoll/src/Makevars |only RcppRoll-0.4.0/RcppRoll/src/Makevars.win |only RcppRoll-0.4.0/RcppRoll/src/RcppRoll.cpp | 2695 ++++++++++++--- RcppRoll-0.4.0/RcppRoll/src/init.c |only RcppRoll-0.4.0/RcppRoll/tests/testthat/test-accuracy.R |only RcppRoll-0.4.0/RcppRoll/tests/testthat/test-conditions.R |only RcppRoll-0.4.0/RcppRoll/tests/testthat/test-degenerate.R |only RcppRoll-0.4.0/RcppRoll/tests/testthat/test-matrix.R |only RcppRoll-0.4.0/RcppRoll/tests/testthat/test-n-weights.R |only RcppRoll-0.4.0/RcppRoll/tests/testthat/test-partial.R |only RcppRoll-0.4.0/RcppRoll/tests/testthat/test-threads.R |only RcppRoll-0.4.0/RcppRoll/tests/testthat/test-var-sd.R |only RcppRoll-0.4.0/RcppRoll/tests/testthat/test-weights.R | 243 + 29 files changed, 3038 insertions(+), 783 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-01-30 6.0-1
2020-11-18 6.0-0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-17 1.5.0
2023-09-18 1.4.0
2022-08-09 1.3.0
2021-11-18 1.2.0
2020-06-26 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-09-25 2.3.15
2023-09-19 2.3.14
2022-01-24 2.2.2
2021-10-26 2.1.11
2021-09-17 2.1.9
2020-08-25 2.1.8
2019-12-12 2.1.6
2019-10-17 2.1.5
2017-10-30 1.0.79
2017-09-25 1.0.76
2017-07-12 1.0.70
2017-05-24 1.0.63
2016-11-22 1.0.61
2016-11-20 1.0.60
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-05 1.1.4
2021-11-07 1.1.3
2021-10-21 1.1.2
2021-09-22 1.1.1
2021-08-13 1.1.0
2021-04-20 0.1.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-12-01 1.1.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-06-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-05-06 1.2.0
2026-01-12 0.1.0
Title: Tools and Statistical Procedures in Plant Science
Description: The 'inti' package is part of the 'inkaverse' project for developing
different procedures and tools used in plant science and experimental designs.
The mean aim of the package is to support researchers during the planning of
experiments and data collection (tarpuy()), data analysis and graphics (yupana())
, and scientific writing.
Learn more about the 'inkaverse' project at <https://inkaverse.com/>.
Author: Flavio Lozano-Isla [aut, cre] ,
Yoel Diaz-Saucedo [aut] ,
Victor-Hugo Baldera-Chaponan [aut] ,
Maria Belen Kistner [ctb] ,
QuipoLab [ctb],
Inkaverse [cph]
Maintainer: Flavio Lozano-Isla <flozanoisla@gmail.com>
Diff between inti versions 0.7.3 dated 2026-08-20 and 0.7.4 dated 2026-09-06
DESCRIPTION | 10 MD5 | 67 NEWS.md | 22 R/web_table.R | 83 - R/yupana_analysis.R | 8 build/vignette.rds |binary inst/doc/DoE-1_DCA.R |only inst/doc/DoE-1_DCA.html |only inst/doc/DoE-1_DCA.qmd |only inst/doc/DoE-1_RCBD.R |only inst/doc/DoE-1_RCBD.html |only inst/doc/DoE-1_RCBD.qmd |only inst/doc/DoE-2_AUG.R |only inst/doc/DoE-2_AUG.html |only inst/doc/DoE-2_AUG.qmd |only inst/doc/DoE-2_DCA.R |only inst/doc/DoE-2_DCA.html |only inst/doc/DoE-2_DCA.qmd |only inst/doc/DoE-2_RCBD.R |only inst/doc/DoE-2_RCBD.html |only inst/doc/DoE-2_RCBD.qmd |only inst/doc/DoE-2_SPLIT.R |only inst/doc/DoE-2_SPLIT.html |only inst/doc/DoE-2_SPLIT.qmd |only inst/doc/DoE-3_DCA.R |only inst/doc/DoE-3_DCA.html |only inst/doc/DoE-3_DCA.qmd |only inst/doc/DoE-3_RCBD.R |only inst/doc/DoE-3_RCBD.html |only inst/doc/DoE-3_RCBD.qmd |only inst/doc/apps.html | 19 inst/doc/apps.qmd | 20 inst/extdata/_extensions/scihub/article.qmd | 35 inst/extdata/_extensions/scihub/files/render2rticle.qmd |only inst/extdata/_extensions/scihub/files/render2rticle_V1.qmd |only inst/tarpuy/_dependencies.R |only inst/tarpuy/rsconnect/shinyapps.io/inkaverse/tarpuy.dcf | 2 inst/tarpuy/server.R | 1059 ++++++------- inst/tarpuy/setup.R |only inst/yupana/rsconnect/shinyapps.io/inkaverse/yupana.dcf | 2 inst/yupana/server.R | 227 +- inst/yupana/setup.R |only inst/yupana/ui.R | 250 ++- man/web_table.Rd | 2 vignettes/DoE-1_DCA.qmd |only vignettes/DoE-1_RCBD.qmd |only vignettes/DoE-2_AUG.qmd |only vignettes/DoE-2_DCA.qmd |only vignettes/DoE-2_RCBD.qmd |only vignettes/DoE-2_SPLIT.qmd |only vignettes/DoE-3_DCA.qmd |only vignettes/DoE-3_RCBD.qmd |only vignettes/apps.qmd | 20 53 files changed, 1177 insertions(+), 649 deletions(-)