Title: Tempered Stable Subordinators and Related Distributions
Description: Contains methods for the simulation of tempered stable subordinators and related distributions. Including classical tempered stable (both finite and infinite variation), rapidly deceasing tempered stable, truncated stable, truncated tempered stable, generalized Dickman, truncated gamma, generalized gamma, and p-gamma. For details, see Dassios et al (2019) <doi:10.1017/jpr.2019.6>, Dassios et al (2020) <doi:10.1145/3368088>, Grabchak (2021) <doi:10.1016/j.spl.2020.109015>, Grabchak (2026) <doi:10.48550/arXiv.2604.17732>.
Author: Michael Grabchak [aut, cre],
Lijuan Cao [aut]
Maintainer: Michael Grabchak <mgrabcha@charlotte.edu>
Diff between SubTS versions 1.0 dated 2023-02-17 and 2.0 dated 2026-09-13
DESCRIPTION | 21 +- MD5 | 18 + NAMESPACE | 9 R/SubTS.R | 36 +++ build/partial.rdb |binary man/SubTS-package.Rd | 7 man/rCTSM.Rd |only man/rCTSP.Rd |only man/rSubCTS.Rd | 4 src/SubTS.c | 480 +++++++++++++++++++++++++++++++++++++-------------- src/init.c | 28 +- 11 files changed, 431 insertions(+), 172 deletions(-)
Title: Fast Multi-Page PDF Report Layout on the Graphics Device
Description: A lightweight, dependency-free engine to build multi-page PDF
reports quickly on top of R's built-in graphics device ('pdf'/'cairo_pdf').
Content is placed by a measured flow layout: every text block reports its
real width and height via 'strwidth'/'strheight', the vertical cursor
advances by measured height, and pages break automatically. This eliminates
the text-overlap of dead-reckoned coordinate reports (such as the 'nmw'
NONMEM diagnostic reports) and replaces slow '.Rmd'/'knitr'/'LaTeX'
pipelines for fixed report generation: no external toolchain is started and
the document is written in a single pass. Interactive AcroForm CRFs are out
of scope.
Author: Kyun-Seop Bae [aut, cre]
Maintainer: Kyun-Seop Bae <k@acr.kr>
Diff between simPDF versions 0.1.1 dated 2026-07-30 and 0.1.2 dated 2026-09-13
DESCRIPTION | 13 ++++++----- MD5 | 18 ++++++++-------- NEWS.md | 18 ++++++++++++++++ R/block_table.R | 3 +- R/flow.R | 6 ++++- README.md | 51 +++++++++++++++++++++++++++++++++------------- inst/doc/simPDF.Rmd | 22 ++++++++++++++----- inst/doc/simPDF.html | 26 +++++++++++++++-------- inst/tinytest/test_flow.R | 24 +++++++++++++++++++++ vignettes/simPDF.Rmd | 22 ++++++++++++++----- 10 files changed, 151 insertions(+), 52 deletions(-)
Title: Helper Functions for Bayesian Kernel Machine Regression
Description: Provides a suite of helper functions to support Bayesian Kernel
Machine Regression (BKMR) analyses in environmental health research. It
enables the simulation of realistic multivariate exposure data using
Multivariate Skewed Gamma distributions, estimation of distributional
parameters by subgroup, and application of adaptive, data-driven thresholds
for feature selection via Posterior Inclusion Probabilities (PIPs). It is
especially suited for handling skewed exposure data and enhancing the
interpretability of BKMR results through principled variable selection. The
methodology is described in Hasan et al. (2025) <doi:10.1080/00949655.2025.2608780>
and <doi:10.1101/2025.04.14.25325822>.
Author: Kazi Tanvir Hasan [aut, cre] ,
Ibrahimou Boubakari [aut] ,
Guerini Cristian [aut] ,
Bursac Zoran [aut] ,
Roberto Lucchini [aut] ,
Gabriel Odom [aut]
Maintainer: Kazi Tanvir Hasan <khasa006@fiu.edu>
Diff between simBKMRdata versions 0.2.1 dated 2025-05-14 and 0.2.2 dated 2026-09-13
simBKMRdata-0.2.1/simBKMRdata/inst/tests |only simBKMRdata-0.2.2/simBKMRdata/DESCRIPTION | 11 simBKMRdata-0.2.2/simBKMRdata/MD5 | 41 simBKMRdata-0.2.2/simBKMRdata/NEWS.md | 38 simBKMRdata-0.2.2/simBKMRdata/R/CalculatePipThreshold.R | 2 simBKMRdata-0.2.2/simBKMRdata/R/SimulateGroupData.R | 5 simBKMRdata-0.2.2/simBKMRdata/R/SimulateGroupGaussian.R | 6 simBKMRdata-0.2.2/simBKMRdata/inst/doc/bkmr_threshold.html | 78 simBKMRdata-0.2.2/simBKMRdata/inst/doc/estimation_and_simulation.html | 60 simBKMRdata-0.2.2/simBKMRdata/inst/doc/packageOverview.html | 878 +++++----- simBKMRdata-0.2.2/simBKMRdata/inst/doc/packageOverview.qmd | 39 simBKMRdata-0.2.2/simBKMRdata/man/calculate_pip_threshold.Rd | 2 simBKMRdata-0.2.2/simBKMRdata/man/simulate_group_data.Rd | 5 simBKMRdata-0.2.2/simBKMRdata/man/simulate_group_gaussian.Rd | 6 simBKMRdata-0.2.2/simBKMRdata/tests |only simBKMRdata-0.2.2/simBKMRdata/vignettes/packageOverview.qmd | 39 simBKMRdata-0.2.2/simBKMRdata/vignettes/references.bib | 15 17 files changed, 618 insertions(+), 607 deletions(-)
Title: Render 'LimeSurvey' '.lss' Questionnaires as Word and PDF
Documents
Description: Render 'LimeSurvey' '.lss' survey exports as
questionnaire documents in Word ('.docx') or PDF, displaying one to
four languages side by side with localized chrome in English, French,
German, Spanish and Italian. Includes a rule-based automated audit
that flags missing translations, forward filter references, duplicate
codes, array-scale inconsistencies and orphan structural references.
Designed for anyone working with a 'LimeSurvey' survey: researchers,
methodologists, ethics committees, translators and reviewers.
Processing is fully
local: the source file is the only input and no questionnaire content
is uploaded to a third-party service.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between lssdoc versions 0.1.1 dated 2026-06-18 and 0.2.0 dated 2026-09-13
DESCRIPTION | 18 +++--- MD5 | 67 +++++++++++++++----------- NAMESPACE | 22 +++++--- NEWS.md | 24 +++++++++ R/chrome_strings.R | 2 R/lss_defaults.R |only R/lss_pdf.R | 7 ++ R/lss_spec.R |only R/lssdoc-package.R | 1 R/read_lss.R | 20 +++++-- R/render_item.R | 2 R/render_layout.R | 4 - R/render_lss_audit_docx.R | 4 - R/render_lss_docx.R | 12 ++-- R/render_meta_table.R | 2 R/render_questionnaire.R | 4 - R/render_table_template.R | 67 +++++++++++++++----------- R/render_utils.R | 2 R/write_lss.R |only README.md | 33 ++++++------ build/vignette.rds |binary inst/CITATION | 2 inst/WORDLIST | 14 +++-- inst/doc/lssdoc.R | 2 inst/doc/lssdoc.Rmd | 4 - inst/doc/lssdoc.html | 12 ++-- man/figures/lifecycle-deprecated.svg |only man/figures/lifecycle-experimental.svg |only man/figures/lifecycle-stable.svg |only man/figures/lifecycle-superseded.svg |only man/figures/template_table.png |binary man/lss_spec.Rd |only man/lssdoc-package.Rd | 4 - man/render_questionnaire.Rd | 4 - man/write_lss.Rd |only tests/testthat/test-coverage-full.R |only tests/testthat/test-coverage-full2.R |only tests/testthat/test-coverage-full3.R |only tests/testthat/test-coverage-full4.R |only tests/testthat/test-coverage-table-template.R |only tests/testthat/test-write_lss.R |only vignettes/lssdoc.Rmd | 4 - 42 files changed, 206 insertions(+), 131 deletions(-)
Title: Simple, Multiple and Joint Correspondence Analysis
Description: Computation and visualization of simple, multiple and joint correspondence analysis.
Author: Michael Greenacre [aut],
Oleg Nenadic [aut, cre],
Michael Friendly [ctb]
Maintainer: Oleg Nenadic <oleg.nenadic@nord.no>
Diff between ca versions 0.71.1 dated 2020-01-24 and 0.72 dated 2026-09-13
DESCRIPTION | 12 ++++++------ MD5 | 26 +++++++++++++------------- NAMESPACE | 2 ++ NEWS | 4 +++- R/print.ca.r | 4 ++-- R/print.mjca.r | 2 +- data/author.rda |binary data/smoke.rda |binary data/wg93.rda |binary inst/CITATION | 8 ++++---- man/ca.rd | 2 +- man/mjca.rd | 2 +- man/plot.ca.rd | 8 ++++---- man/plot.mjca.rd | 8 ++++---- 14 files changed, 41 insertions(+), 37 deletions(-)
Title: Anomaly Scoring for Multivariate Time Series
Description: Compute an anomaly score for multivariate time series based on the k-nearest neighbors algorithm. Different computations of distances between time series are provided.
Author: Guillermo Granados [aut, cre]
Maintainer: Guillermo Granados <guillermo.granadosgarcia@outlook.com>
This is a re-admission after prior archival of version 0.1 dated 2024-11-21
Diff between AnomalyScore versions 0.1 dated 2024-11-21 and 0.1.3 dated 2026-09-13
DESCRIPTION | 15 +++++--- MD5 | 8 ++-- R/PDCmatrix.R | 95 +++++++++++++++++++++++++++++++++++++++++++++++++++--- README.md | 12 +++++- build/partial.rdb |binary 5 files changed, 113 insertions(+), 17 deletions(-)
Title: Area-Proportional Euler and Venn Diagrams
Description: Generate area-proportional Euler diagrams using numerical
optimization. A Euler diagram is a generalization of a Venn diagram,
relaxing the criterion that all interactions need to be represented.
Diagrams may be fit with circles, ellipses, squares, and rectangles via a
wide range of inputs and can be visualized in numerous ways.
Author: Johan Larsson [aut, cre, cph] ,
A. Jonathan R. Godfrey [ctb],
Peter Gustafsson [ctb],
David H. Eberly [ctb] ,
Emanuel Huber [ctb] ,
Florian Prive [ctb]
Maintainer: Johan Larsson <johan@jolars.co>
Diff between eulerr versions 8.3.0 dated 2026-08-21 and 8.3.1 dated 2026-09-13
DESCRIPTION | 6 ++-- MD5 | 22 ++++++++-------- NEWS.md | 6 ++++ R/plot.euler.R | 28 +++++++++++--------- inst/doc/comparison.html | 4 +- inst/doc/gallery.html | 14 +++++----- inst/doc/introduction.html | 4 +- inst/doc/loss-functions.html | 2 - inst/doc/under-the-hood.html | 4 +- inst/doc/venn-diagrams.html | 4 +- inst/doc/visualization.html | 4 +- tests/testthat/test-plotting.R | 55 ++++++++++++++++++++++++++++++++++++----- 12 files changed, 103 insertions(+), 50 deletions(-)
Title: Agent-Based Model for Taenia_solium Transmission and Control
Description: The cystiSim package provides an agent-based model for Taenia solium transmission and control. cystiSim was developed within the framework of CYSTINET, the European Network on taeniosis/cysticercosis, COST ACTION TD1302.
Author: Brecht Devleesschauwer [aut, cre],
Uffe Christian Braae [aut]
Maintainer: Brecht Devleesschauwer <brechtdv@gmail.com>
Diff between cystiSim versions 0.1.0 dated 2016-05-15 and 0.2.1 dated 2026-09-13
cystiSim-0.1.0/cystiSim/README.md |only cystiSim-0.2.1/cystiSim/DESCRIPTION | 13 ++++---- cystiSim-0.2.1/cystiSim/MD5 | 17 +++++----- cystiSim-0.2.1/cystiSim/NEWS | 22 +++++++++++++ cystiSim-0.2.1/cystiSim/R/baseline.R | 38 +++++++++++++----------- cystiSim-0.2.1/cystiSim/R/fit.R | 5 ++- cystiSim-0.2.1/cystiSim/R/model.R | 25 +++++++++------ cystiSim-0.2.1/cystiSim/man/baseline.Rd | 4 +- cystiSim-0.2.1/cystiSim/man/cystiSim-package.Rd | 8 ++--- cystiSim-0.2.1/cystiSim/man/fit.Rd | 2 - 10 files changed, 85 insertions(+), 49 deletions(-)
Title: Composite Index Builder & Analytics 'shiny' App
Description: Provides an interactive 'shiny' application for constructing,
analysing, comparing, and visualising composite indices from tabular
multidimensional data. Supports multi-sheet 'Excel' workbooks with
active-sheet selection, refresh controls, per-sheet and workbook-wide
exports, automatic reshaping of wide indicator-year columns such as
'IN1-2019' into panel form, configurable missing-value code handling,
indicator direction and normalisation controls, equal and custom weighting,
entity-level ranking, time-series
analysis and forecasting, entity comparisons, pillar-based sub-indices
with equal, custom, correlation-based, or principal-component weights, and
diagnostic tools including internal-consistency reliability assessment,
coefficient of variation, principal component analysis, sensitivity analysis,
correlation heatmaps, and weighted flow visualizations.
Author: Hossein Hassani [aut],
Steve Macfeely [aut],
Petra Kynclova [aut],
Nour Barnat [aut],
Leila Marvian Mashhad [aut, cre],
Fernando CANTU BAZALDUA [aut]
Maintainer: Leila Marvian Mashhad <leila.marveian@gmail.com>
Diff between compIndexBuilder versions 2.0.0 dated 2026-08-19 and 2.1.0 dated 2026-09-13
DESCRIPTION | 12 + MD5 | 16 +- NEWS.md | 25 +++ R/compIndexBuilder.R | 5 README.md | 53 +++++++- inst/shiny-app/app.R | 235 ++++++++++++++++++++++++------------- inst/shiny-app/data_prep_helpers.R |only man/compIndexBuilder-package.Rd | 9 - man/compIndexBuilder.Rd | 5 tests/testthat/test-data-prep.R |only 10 files changed, 257 insertions(+), 103 deletions(-)
More information about compIndexBuilder at CRAN
Permanent link
Title: 'DEXi' Decision Tree Analysis and Visualization
Description: Provides a versatile toolkit for analyzing and visualizing 'DEXi' (Decision EXpert for education)
decision trees, facilitating multi-criteria decision analysis directly within R. Users can
read .dxi files, manipulate decision trees, and evaluate various scenarios. It supports sensitivity
analysis through Monte Carlo simulations, one-at-a-time approaches, and variance-based
methods, helping to discern the impact of input variations. Additionally, it includes functionalities
for generating sampling plans and an array of visualization options for decision trees and
analysis results. A distinctive feature is the synoptic table plot, aiding in the efficient
comparison of scenarios. Whether for in-depth decision modeling or sensitivity analysis, this
package stands as a comprehensive solution. Definition of sensitivity analyses available in
Carpani, Bergez and Monod (2012) <doi:10.1016/j.envsoft.2011.10.002> and detailed description of the package available in
Alaphilippe et al. (2025) [...truncated...]
Author: Roland Allart [aut],
Jacques-Eric Bergez [aut] ,
Marta Carpani [aut],
Herve Monod [aut] ,
Aude Alaphilippe [ctb] ,
Nicolas Cavan [ctb, cre],
INRAE [cph] )
Maintainer: Nicolas Cavan <nicolas.cavan@inrae.fr>
Diff between dexisensitivity versions 1.0.3 dated 2026-08-30 and 1.0.4 dated 2026-09-13
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/option.R | 2 +- tests/testthat/test-monte_carlo.R | 1 + tests/testthat/test-node.R | 2 +- tests/testthat/test-oat.R | 1 + tests/testthat/test-option.R | 2 +- 8 files changed, 19 insertions(+), 13 deletions(-)
More information about dexisensitivity at CRAN
Permanent link
Title: Longitudinal Bayesian Historical Borrowing Models
Description: Historical borrowing in clinical trials can improve
precision and operating characteristics. This package supports
a longitudinal hierarchical model to borrow historical
control data from other studies to better characterize the
control response of the current study. It also quantifies
the amount of borrowing through longitudinal benchmark models (independent
and pooled). The hierarchical model approach to historical borrowing
is discussed by Viele et al. (2013) <doi:10.1002/pst.1589>.
Author: William Michael Landau [aut, cre] ,
Albert Man [rev],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau.oss@gmail.com>
Diff between historicalborrowlong versions 0.1.0 dated 2024-09-25 and 0.1.1 dated 2026-09-13
DESCRIPTION | 12 MD5 | 88 NAMESPACE | 110 NEWS.md | 4 R/hbl_convergence.R | 12 R/hbl_data.R | 38 R/hbl_ess.R | 2 R/hbl_plot_borrow.R | 4 R/hbl_plot_group.R | 2 R/hbl_summary.R | 111 R/utils_assert.R | 2 R/utils_matrix.R | 6 R/utils_sim.R | 32 R/utils_stan.R | 17 build/vignette.rds |binary inst/doc/methods.html | 693 +++- man/hbl_convergence.Rd | 10 man/hbl_ess.Rd | 4 man/hbl_mcmc_hierarchical.Rd | 10 man/hbl_mcmc_independent.Rd | 10 man/hbl_mcmc_pool.Rd | 10 man/hbl_mcmc_sge.Rd | 10 man/hbl_plot_borrow.Rd | 6 man/hbl_plot_group.Rd | 6 man/hbl_plot_tau.Rd | 6 man/hbl_sim_hierarchical.Rd | 6 man/hbl_sim_independent.Rd | 6 man/hbl_sim_pool.Rd | 6 man/hbl_summary.Rd | 4 src/stanExports_historicalborrowlong.cc | 34 src/stanExports_historicalborrowlong.h | 4523 ++++++++++++++-------------- tests/testthat/test-hbl_convergence.R | 4 tests/testthat/test-hbl_data.R | 2 tests/testthat/test-hbl_ess.R | 40 tests/testthat/test-hbl_mcmc_hierarchical.R | 4 tests/testthat/test-hbl_mcmc_independent.R | 4 tests/testthat/test-hbl_mcmc_pool.R | 4 tests/testthat/test-hbl_mcmc_sge.R | 4 tests/testthat/test-hbl_plot_borrow.R | 12 tests/testthat/test-hbl_plot_group.R | 12 tests/testthat/test-hbl_plot_tau.R | 4 tests/testthat/test-hbl_summary.R | 224 - tests/testthat/test-utils_sim.R | 8 tests/testthat/test-utils_stan.R | 4 vignettes/bibliography.bib | 12 45 files changed, 3379 insertions(+), 2743 deletions(-)
More information about historicalborrowlong at CRAN
Permanent link
Title: Visualizing Hypothesis Tests in Multivariate Linear Models
Description: Provides HE plot and other functions for visualizing hypothesis
tests in multivariate linear models. HE plots represent sums-of-squares-and-products
matrices for linear hypotheses and for error using ellipses (in two
dimensions) and ellipsoids (in three dimensions). It also provides other tools for analysis and graphical display of the models
such as robust methods and homogeneity of variance covariance matrices.
The related 'candisc' package provides visualizations in a reduced-rank canonical discriminant space when
there are more than a few response variables.
Author: Michael Friendly [aut, cre] ,
John Fox [aut] ,
Georges Monette [aut] ,
Phil Chalmers [ctb] ,
Duncan Murdoch [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between heplots versions 1.8.4 dated 2026-08-23 and 1.8.5 dated 2026-09-13
heplots-1.8.4/heplots/R/zzz.R |only heplots-1.8.4/heplots/vignettes/fig |only heplots-1.8.4/heplots/vignettes/grades-HE3D.png |only heplots-1.8.4/heplots/vignettes/plastic1-HE3D.jpg |only heplots-1.8.4/heplots/vignettes/plot-plastic1.pdf |only heplots-1.8.4/heplots/vignettes/rohwer-HE3D.png |only heplots-1.8.5/heplots/DESCRIPTION | 26 heplots-1.8.5/heplots/MD5 | 419 ++-- heplots-1.8.5/heplots/NAMESPACE | 10 heplots-1.8.5/heplots/NEWS.md | 82 heplots-1.8.5/heplots/R/Ellipsoid.R | 2 heplots-1.8.5/heplots/R/Mahalanobis.R | 12 heplots-1.8.5/heplots/R/arrow3d.R | 4 heplots-1.8.5/heplots/R/bartlettTests.R | 6 heplots-1.8.5/heplots/R/bbox3d.R | 2 heplots-1.8.5/heplots/R/boxM.R | 36 heplots-1.8.5/heplots/R/coefplot.mlm.R | 57 heplots-1.8.5/heplots/R/colDevs.R | 8 heplots-1.8.5/heplots/R/covEllipses.R | 6 heplots-1.8.5/heplots/R/cqplot.R | 16 heplots-1.8.5/heplots/R/cross3d.R | 4 heplots-1.8.5/heplots/R/datasets.R | 182 + heplots-1.8.5/heplots/R/distancePlot.R | 6 heplots-1.8.5/heplots/R/eigstatCI.R | 4 heplots-1.8.5/heplots/R/ellipse.axes.R | 6 heplots-1.8.5/heplots/R/ellipse.box.R | 4 heplots-1.8.5/heplots/R/ellipse3d.axes.R | 4 heplots-1.8.5/heplots/R/etasq.R | 8 heplots-1.8.5/heplots/R/glance.mlm.R | 11 heplots-1.8.5/heplots/R/gsorth.R | 4 heplots-1.8.5/heplots/R/heplot.R | 40 heplots-1.8.5/heplots/R/heplot1d.R | 18 heplots-1.8.5/heplots/R/heplot3d.R | 96 - heplots-1.8.5/heplots/R/heplots-internal.R | 11 heplots-1.8.5/heplots/R/heplots-package.R | 22 heplots-1.8.5/heplots/R/interpPlot.R | 8 heplots-1.8.5/heplots/R/label.ellipse.R | 40 heplots-1.8.5/heplots/R/leveneTests.R | 6 heplots-1.8.5/heplots/R/logdetCI.R | 6 heplots-1.8.5/heplots/R/mark.H0.R | 4 heplots-1.8.5/heplots/R/noteworthy.R | 6 heplots-1.8.5/heplots/R/pairs.mlm.R | 12 heplots-1.8.5/heplots/R/plot.boxM.R | 12 heplots-1.8.5/heplots/R/plot.robmlm.R | 6 heplots-1.8.5/heplots/R/pvPlot.R | 40 heplots-1.8.5/heplots/R/reexports.R |only heplots-1.8.5/heplots/R/rel_diff.R | 2 heplots-1.8.5/heplots/R/robmlm.R | 32 heplots-1.8.5/heplots/R/schoolsites.R | 4 heplots-1.8.5/heplots/R/standardize.R |only heplots-1.8.5/heplots/R/statList.R | 2 heplots-1.8.5/heplots/R/termMeans.R | 4 heplots-1.8.5/heplots/R/text_usr.R | 6 heplots-1.8.5/heplots/R/traceCI.R |only heplots-1.8.5/heplots/R/trans.colors.R | 6 heplots-1.8.5/heplots/R/uniStats.R | 4 heplots-1.8.5/heplots/R/utility-car.R | 2 heplots-1.8.5/heplots/data/LearnDis.RData |only heplots-1.8.5/heplots/data/ReadingDisability.RData |only heplots-1.8.5/heplots/inst/WORDLIST | 37 heplots-1.8.5/heplots/inst/doc/HE_manova.R | 15 heplots-1.8.5/heplots/inst/doc/HE_manova.Rmd | 1800 +++++++++---------- heplots-1.8.5/heplots/inst/doc/HE_manova.html | 300 +-- heplots-1.8.5/heplots/inst/doc/HE_mmra.R | 6 heplots-1.8.5/heplots/inst/doc/HE_mmra.Rmd | 1448 +++++++-------- heplots-1.8.5/heplots/inst/doc/HE_mmra.html | 12 heplots-1.8.5/heplots/inst/doc/Robust.R | 8 heplots-1.8.5/heplots/inst/doc/Robust.Rmd | 909 ++++----- heplots-1.8.5/heplots/inst/doc/Robust.html | 60 heplots-1.8.5/heplots/inst/doc/datasets.R | 2 heplots-1.8.5/heplots/inst/doc/datasets.Rmd | 380 ++-- heplots-1.8.5/heplots/inst/doc/datasets.html | 298 +-- heplots-1.8.5/heplots/man/Adopted.Rd | 4 heplots-1.8.5/heplots/man/Ellipsoid.Rd | 2 heplots-1.8.5/heplots/man/LearnDis.Rd |only heplots-1.8.5/heplots/man/Mahalanobis.Rd | 12 heplots-1.8.5/heplots/man/Oslo.Rd | 6 heplots-1.8.5/heplots/man/Pottery2.Rd | 8 heplots-1.8.5/heplots/man/ReadingDisability.Rd |only heplots-1.8.5/heplots/man/arrow3d.Rd | 4 heplots-1.8.5/heplots/man/bartlettTests.Rd | 6 heplots-1.8.5/heplots/man/bbox3d.Rd | 2 heplots-1.8.5/heplots/man/boxM.Rd | 13 heplots-1.8.5/heplots/man/coefplot.Rd | 40 heplots-1.8.5/heplots/man/colDevs.Rd | 8 heplots-1.8.5/heplots/man/covEllipses.Rd | 6 heplots-1.8.5/heplots/man/cqplot.Rd | 16 heplots-1.8.5/heplots/man/cross3d.Rd | 4 heplots-1.8.5/heplots/man/df.terms.Rd | 2 heplots-1.8.5/heplots/man/distancePlot.Rd | 6 heplots-1.8.5/heplots/man/eigstatCI.Rd | 2 heplots-1.8.5/heplots/man/ellipse.axes.Rd | 6 heplots-1.8.5/heplots/man/ellipse.box.Rd | 4 heplots-1.8.5/heplots/man/ellipse3d.axes.Rd | 4 heplots-1.8.5/heplots/man/etasq.Rd | 8 heplots-1.8.5/heplots/man/figures/README-iris4-1.png |binary heplots-1.8.5/heplots/man/glance.mlm.Rd | 14 heplots-1.8.5/heplots/man/gsorth.Rd | 4 heplots-1.8.5/heplots/man/heplot.Rd | 40 heplots-1.8.5/heplots/man/heplot1d.Rd | 18 heplots-1.8.5/heplots/man/heplot3d.Rd | 86 heplots-1.8.5/heplots/man/heplots-internal.Rd | 5 heplots-1.8.5/heplots/man/heplots-package.Rd | 20 heplots-1.8.5/heplots/man/interpPlot.Rd | 8 heplots-1.8.5/heplots/man/label.ellipse.Rd | 16 heplots-1.8.5/heplots/man/leveneTests.Rd | 6 heplots-1.8.5/heplots/man/logdetCI.Rd | 6 heplots-1.8.5/heplots/man/mark.H0.Rd | 4 heplots-1.8.5/heplots/man/noteworthy.Rd | 6 heplots-1.8.5/heplots/man/pairs.mlm.Rd | 12 heplots-1.8.5/heplots/man/plot.boxM.Rd | 12 heplots-1.8.5/heplots/man/plot.robmlm.Rd | 6 heplots-1.8.5/heplots/man/pvPlot.Rd | 10 heplots-1.8.5/heplots/man/reexports.Rd |only heplots-1.8.5/heplots/man/rel_diff.Rd | 2 heplots-1.8.5/heplots/man/robmlm.Rd | 32 heplots-1.8.5/heplots/man/statList.Rd | 2 heplots-1.8.5/heplots/man/stdcoef.Rd |only heplots-1.8.5/heplots/man/stdmodel.Rd |only heplots-1.8.5/heplots/man/termMeans.Rd | 4 heplots-1.8.5/heplots/man/text_usr.Rd | 6 heplots-1.8.5/heplots/man/traceCI.Rd |only heplots-1.8.5/heplots/man/trans.colors.Rd | 6 heplots-1.8.5/heplots/man/uniStats.Rd | 4 heplots-1.8.5/heplots/vignettes/HE_manova.Rmd | 1800 +++++++++---------- heplots-1.8.5/heplots/vignettes/HE_mmra.Rmd | 1448 +++++++-------- heplots-1.8.5/heplots/vignettes/Robust.Rmd | 909 ++++----- heplots-1.8.5/heplots/vignettes/datasets.Rmd | 380 ++-- heplots-1.8.5/heplots/vignettes/images |only 129 files changed, 6118 insertions(+), 5494 deletions(-)
Title: Generalized Linear Models with Truncated Lasso Penalty
Description: Extremely efficient procedures for fitting regularization path with l0, l1, and truncated lasso penalty for linear regression and logistic regression models. This version is a completely new version compared with our previous version, which was mainly based on R. New core algorithms are developed and are now written in C++ and highly optimized.
Author: Chunlin Li [aut, cph] ,
Yu Yang [aut, cre, cph] ,
Chong Wu [aut, cph] ,
Xiaotong Shen [ths, cph],
Wei Pan [ths, cph]
Maintainer: Yu Yang <yuyang.stat@gmail.com>
Diff between glmtlp versions 2.0.2 dated 2024-10-02 and 2.0.3 dated 2026-09-13
DESCRIPTION | 15 ++++++++------- MD5 | 22 +++++++++++----------- NEWS.md | 8 ++++++++ build/vignette.rds |binary inst/doc/glmtlp.R | 2 +- inst/doc/glmtlp.html | 43 ++++++++++++++++++++++++++----------------- src/linreg_l0.cc | 1 + src/linreg_l1.cc | 2 +- src/linreg_tlp.cc | 2 +- src/logistic_l0.cc | 1 + src/logistic_l1.cc | 2 +- src/logistic_tlp.cc | 2 +- 12 files changed, 60 insertions(+), 40 deletions(-)
Title: Bayesian Calibration of Complex Computer Codes
Description: Performs Bayesian calibration of computer models as per
Kennedy and O'Hagan 2001. The package includes routines to find the
hyperparameters and parameters; see the help page for stage1() for a
worked example using the toy dataset. A tutorial is provided in the
calex.Rnw vignette; and a suite of especially simple one dimensional
examples appears in inst/doc/one.dim/.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between calibrator versions 1.2-8 dated 2019-03-07 and 1.2-9 dated 2026-09-13
DESCRIPTION | 13 +++++++------ MD5 | 23 ++++++++++++----------- R/calibrator.R | 3 --- build/partial.rdb |binary build/vignette.rds |binary data/toys.rda |binary inst/CITATION | 9 ++++----- inst/doc/calex.R | 2 -- inst/doc/calex.pdf |binary inst/toys.R |only man/H.fun.Rd | 1 - man/phi.fun.toy.Rd | 4 ++-- man/toys.Rd | 10 ++-------- 13 files changed, 27 insertions(+), 38 deletions(-)
Title: Image Processing for Simulated Cameras
Description: Uses convolution-based techniques to generate simulated camera bokeh, depth of field, and other camera effects, using an image and an optional depth map. Accepts both filename inputs and in-memory array representations of images and matrices, including common raster formats such as 'JPEG', 'PNG', 'TIFF', 'TGA', 'BMP', 'PSD', 'GIF', 'HDR', 'PIC', 'PNM', 'DNG', and 'EXR'. Includes functions to perform 2D convolutions, color correction, colorspace conversion, image/matrix reorientation and resizing, image and text overlays, exposure adjustment, camera vignette effects, and image titles.
Author: Tyler Morgan-Wall [aut, cph, cre]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between rayimage versions 0.26.1 dated 2026-06-12 and 0.27.1 dated 2026-09-13
DESCRIPTION | 8 MD5 | 58 +- NAMESPACE | 2 R/cli_helpers.R | 17 R/colorspace_helpers.R | 196 +++---- R/exr_metadata.R |only R/plot_image_grid.R | 7 R/print.R | 33 - R/ray_read_image.R | 62 +- R/ray_write_image.R | 20 R/rayimg.R | 306 ++++++----- R/render_alpha_outline.R | 4 R/render_color_correction.R | 68 +- R/render_environment_white_balance.R |only R/render_gamma_linear.R | 286 +++++------ R/render_to_display.R | 64 +- R/render_white_balance.R | 148 ++--- R/rotate_image_array.R | 20 man/colorspace_from_exr_metadata.Rd |only man/colorspace_to_exr_chromaticities.Rd |only man/estimate_environment_white.Rd |only man/exr_metadata_from_rayimg.Rd |only man/libopenexr_supports_metadata.Rd |only man/normalize_exr_chromaticities.Rd |only man/preserved_exr_metadata.Rd |only man/render_alpha_outline.Rd | 2 man/render_environment_white_balance.Rd |only man/white_current_from_exr_metadata.Rd |only man/xy_to_xyz.Rd |only man/xyz_to_xy.Rd |only tests/testthat/test-dng-io.R | 26 - tests/testthat/test-dng-read-transforms.R | 8 tests/testthat/test-ray_write_image_exr.R | 154 ++++++ tests/testthat/test-rayimg-camera-settings.R | 168 +++--- tests/testthat/test-render_environment_white_balance.R |only tests/testthat/test-render_gamma_linear.R | 436 ++++++++--------- tests/testthat/test-render_text_image-trim.R | 3 37 files changed, 1190 insertions(+), 906 deletions(-)
Title: Copula-Based Mixed Regression Models
Description: Estimation of 2-level factor copula-based regression models for clustered data where the response variable can be either discrete or continuous.
Author: Pavel Krupskii [aut, ctb, cph],
Bouchra R. Nasri [aut, ctb, cph],
Bruno N Remillard [aut, cre, cph]
Maintainer: Bruno N Remillard <bruno.remillard@hec.ca>
Diff between CopulaGAMM versions 0.6.5 dated 2025-04-24 and 0.7.4 dated 2026-09-13
DESCRIPTION | 8 ++++---- MD5 | 37 +++++++++++++++++++++---------------- NAMESPACE | 5 +++-- R/EstContinuous.R | 20 ++++++++++++-------- R/EstDiscrete.R | 16 ++++++++++------ R/cop2param.R |only R/coplik.R | 8 +++++--- R/dcop.R | 18 +++++++++--------- R/linkCop.R | 19 ++++++++++++++++--- R/margins.R | 39 +++++++++++++++++++++++++++++++++------ R/pcond.R | 46 +++++++++++++++++++++++++++++++--------------- R/predictContinuous.R | 3 ++- R/qcond.R | 9 ++++----- man/coplik.Rd | 2 +- man/cpar2param.Rd |only man/dcop.Rd | 2 +- man/dlap.Rd |only man/expcpdf.Rd | 2 +- man/linkCop.Rd | 2 +- man/plap.Rd |only man/qcond.Rd | 2 -- man/qlap.Rd |only 22 files changed, 154 insertions(+), 84 deletions(-)
Title: Design of Experiments and Factorial Plans Utilities
Description: A number of functions to create and analyze factorial plans according to the Design of Experiments (DoE) approach, with the addition of some utility function to perform some statistical analyses. DoE approach follows the approach in "Design and Analysis of Experiments" by Douglas C. Montgomery (2019, ISBN:978-1-119-49244-3). The package also provides utilities used in the course "Analysis of Data and Statistics" at the University of Trento, Italy.
Author: Paolo Bosetti [aut, cre]
Maintainer: Paolo Bosetti <paolo.bosetti@unitn.it>
Diff between adas.utils versions 1.4.0 dated 2026-02-27 and 1.4.1 dated 2026-09-13
DESCRIPTION | 8 - MD5 | 26 ++-- NAMESPACE | 162 ++++++++++++++++--------------- NEWS.md | 4 R/utils.R | 2 README.md | 12 +- build/vignette.rds |binary inst/doc/adas.utils.html | 148 ++++++++++++++-------------- man/adas.utils-package.Rd | 5 man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-6-2.png |binary man/scale_y_pareto.Rd | 2 tests/testthat/test-stats.R | 6 - tests/testthat/test-utils.R | 2 14 files changed, 206 insertions(+), 171 deletions(-)
Title: Access to the 'twelvedata' Financial Data API
Description: The 'twelvedata' REST service offers access to current and historical
data on stocks, standard as well as digital 'crypto' currencies, and other financial
assets covering a wide variety of course and time spans. See <https://twelvedata.com/>
for details, to create an account, and to request an API key for free-but-capped access
to the data.
Author: Dirk Eddelbuettel [aut, cre] ,
Kenneth Rose [ctb]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between td versions 0.0.6 dated 2022-01-26 and 0.0.7 dated 2026-09-13
ChangeLog | 46 ++++++++++++++++++++++++++++++++++++++++++++++ DESCRIPTION | 17 +++++++++++------ MD5 | 14 +++++++++----- R/fun_profile.R |only R/fun_statistics.R |only README.md | 5 +++-- build/partial.rdb |binary inst/NEWS.Rd | 11 ++++++++++- man/fun_profile.Rd |only man/fun_statistics.Rd |only 10 files changed, 79 insertions(+), 14 deletions(-)
Title: Models and Diagnostics for Rasch Measurement Theory
Description: Fits models for Rasch Measurement Theory, whose defining
measurement properties include sufficiency and invariance. Available
models include the dichotomous Rasch, partial credit, rating scale,
many-facet, extended frame of reference and explanatory models.
Explanatory modelling supports predictors at the item and threshold
levels. Comparative judgement models are available for dichotomous and
ordered pairwise responses, with support for extended frames of reference
and explanatory predictors. Functions support estimation and examination
of model fit, targeting, reliability, dimensionality, local dependence,
differential item functioning, equating and simulation. A graphical
interface for fitting models and examining results is provided through an
interactive 'shiny' application.
Author: Joshua A. McGrane [aut, cre]
Maintainer: Joshua A. McGrane <drjoshmcgrane@gmail.com>
Diff between rasch versions 1.12.0 dated 2026-08-24 and 1.12.1 dated 2026-09-13
DESCRIPTION | 47 LICENSE | 2 MD5 | 515 - NAMESPACE | 12 NEWS.md | 1701 +++++ R/RcppExports.R | 1 R/app-project.R | 1360 ++++ R/app.R | 13 R/btl-efrm.R | 994 ++- R/btl-equating.R | 610 + R/btl-independence.R | 672 +- R/btl-targeting.R | 163 R/btl.R | 1113 ++- R/compare.R | 390 - R/ctt.R | 160 R/dependence.R | 148 R/dif-bootstrap.R |only R/dif.R | 1629 +++- R/dimensionality.R | 999 ++- R/drop-items.R | 267 R/efrm.R | 1737 ++++- R/equating.R | 434 + R/estimation.R | 880 ++ R/explanatory.R | 681 +- R/export.R | 886 ++ R/fit-bootstrap.R |only R/fit.R | 334 - R/format.R | 139 R/frame-invariance.R | 533 + R/guttman.R | 11 R/mc.R | 252 R/mfrm.R | 388 - R/person.R | 667 +- R/plots.R | 789 ++ R/rasch-package.R | 17 R/rasch.R | 656 +- R/refuse.R | 102 R/resolve-frames.R | 23 R/simulate.R | 1889 +++++ R/subtests.R | 404 + R/summary-tables.R | 107 R/tailored.R | 366 - R/wright-map.R | 68 README.md | 37 build/vignette.rds |binary inst/CITATION | 2 inst/casestudies/wording_units_selfesteem.R | 18 inst/doc/data-structures.R |only inst/doc/data-structures.Rmd |only inst/doc/data-structures.html |only inst/doc/dif-repeated-measures.R | 9 inst/doc/dif-repeated-measures.Rmd | 54 inst/doc/dif-repeated-measures.html | 134 inst/doc/explanatory-models.R | 10 inst/doc/explanatory-models.Rmd | 40 inst/doc/explanatory-models.html | 122 inst/doc/extended-frame-reference.R | 37 inst/doc/extended-frame-reference.Rmd | 124 inst/doc/extended-frame-reference.html | 338 - inst/doc/many-facet.R | 9 inst/doc/many-facet.Rmd | 19 inst/doc/many-facet.html | 100 inst/doc/paired-comparisons.R | 93 inst/doc/paired-comparisons.Rmd | 269 inst/doc/paired-comparisons.html | 469 + inst/doc/plant-and-detect.Rmd | 97 inst/doc/plant-and-detect.html | 453 + inst/doc/precomputed |only inst/doc/precomputed.R |only inst/doc/rasch-workflow.R | 104 inst/doc/rasch-workflow.Rmd | 297 inst/doc/rasch-workflow.html | 412 - inst/rmarkdown/rasch-report.Rmd | 376 + inst/shiny/app.R | 4264 ++++++++++--- inst/shiny/examples.R | 125 inst/shiny/help.R | 198 man/btl.Rd | 62 man/btl_dif.Rd | 43 man/btl_dimensionality.Rd | 61 man/btl_efrm.Rd | 89 man/btl_equate.Rd | 92 man/btl_explanatory.Rd | 31 man/btl_information.Rd | 2 man/btl_next_pairs.Rd | 13 man/btl_transitivity.Rd | 4 man/chisq_detail.Rd | 11 man/combine_items.Rd | 14 man/compare_fits.Rd | 45 man/ctt_table.Rd | 11 man/dependence_magnitude.Rd | 13 man/dif_anova.Rd | 36 man/dif_bootstrap.Rd |only man/dif_contrasts.Rd | 49 man/dif_posthoc.Rd | 14 man/dif_size.Rd | 55 man/dimensionality_magnitude.Rd | 10 man/dimensionality_test.Rd | 127 man/distractor_analysis.Rd | 19 man/distractor_rescore.Rd | 11 man/drop_items.Rd | 12 man/equate_tests.Rd | 53 man/explanatory_diagnostics.Rd | 15 man/explanatory_test.Rd | 4 man/figures/app-items.png |binary man/fit_bootstrap.Rd |only man/fit_summary_table.Rd | 8 man/frame_invariance.Rd | 57 man/judge_pair_surprise.Rd | 27 man/judge_surprise.Rd | 25 man/lr_test.Rd | 3 man/pcml.Rd | 30 man/pcml_pc.Rd | 31 man/person_extrapolated.Rd | 9 man/person_wle.Rd | 6 man/plot_btl.Rd | 8 man/plot_btl_categories.Rd | 6 man/plot_btl_dim_map.Rd | 8 man/plot_btl_equate.Rd | 4 man/plot_btl_icc.Rd | 5 man/plot_btl_judge_map.Rd | 12 man/plot_btl_scree.Rd | 5 man/plot_btl_targeting.Rd | 8 man/plot_btl_units.Rd | 5 man/plot_ccc.Rd | 12 man/plot_distractors.Rd | 12 man/plot_equate.Rd | 3 man/plot_frames.Rd | 3 man/plot_icc.Rd | 2 man/plot_icc_frames.Rd | 12 man/plot_item_map.Rd | 16 man/plot_kidmap.Rd | 4 man/plot_pcc.Rd | 24 man/plot_person_fit.Rd | 16 man/plot_pimap.Rd | 25 man/plot_scree.Rd | 61 man/plot_tcc.Rd | 5 man/plot_threshold_prob.Rd | 12 man/plot_tif.Rd | 2 man/plot_wright.Rd | 3 man/rack_data.Rd | 3 man/rasch-package.Rd | 26 man/rasch.Rd | 95 man/rasch_efrm.Rd | 149 man/rasch_explanatory.Rd | 29 man/rasch_mfrm.Rd | 39 man/rasch_rng.Rd |only man/relax_explanatory.Rd | 10 man/report_document.Rd | 39 man/report_html.Rd | 54 man/residual_correlations.Rd | 2 man/residual_pca.Rd | 2 man/resolve_dif.Rd | 41 man/resolve_frames.Rd | 7 man/run_app.Rd | 13 man/save_item_plots.Rd | 7 man/save_outputs.Rd | 58 man/sim_recovery.Rd | 46 man/sim_replicate.Rd | 5 man/simulate_btl.Rd | 26 man/simulate_btl_efrm.Rd | 17 man/simulate_efrm.Rd | 39 man/simulate_mfrm.Rd | 23 man/simulate_rasch.Rd | 55 man/split_items.Rd | 8 man/spread_test.Rd | 25 man/tailored_analysis.Rd | 38 man/targeting_table.Rd | 5 man/test_information.Rd | 24 man/weighted_person_estimates.Rd |only man/wright_map.Rd | 12 src/efrm_npml.cpp | 124 tests/testthat.R | 15 tests/testthat/setup-plot-device.R |only tests/testthat/test-anchor-equating-audit.R |only tests/testthat/test-app-bootstrap-code.R |only tests/testthat/test-app-btl-dif-role-freeze.R |only tests/testthat/test-app-cj-dif-code.R |only tests/testthat/test-app-dif-project-migration.R |only tests/testthat/test-app-export-selected-dif.R |only tests/testthat/test-app-project.R | 1266 +++ tests/testthat/test-app-simulation-bundle.R |only tests/testthat/test-app-source-invalidation.R |only tests/testthat/test-btl-dimensionality-availability.R |only tests/testthat/test-btl-dimensionality-export-scope.R |only tests/testthat/test-btl-dimensionality-project-migration.R |only tests/testthat/test-btl-dimensionality-residuals.R |only tests/testthat/test-btl-efrm-separation.R |only tests/testthat/test-btl-efrm-unit-boundary.R |only tests/testthat/test-btl-efrm-within-separation.R |only tests/testthat/test-btl-efrm.R | 430 + tests/testthat/test-btl-equating-conditional-errors.R |only tests/testthat/test-btl-equating.R | 139 tests/testthat/test-btl-information-tails.R |only tests/testthat/test-btl-pair-tie-invariance.R |only tests/testthat/test-btl-targeting.R | 100 tests/testthat/test-btl.R | 483 + tests/testthat/test-column-selectors.R |only tests/testthat/test-combine-model-request.R |only tests/testthat/test-compare-btl-pairwise-identity.R |only tests/testthat/test-compare-ic.R | 262 tests/testthat/test-cran-core.R |only tests/testthat/test-diagnostics.R | 521 + tests/testthat/test-dif-bootstrap.R |only tests/testthat/test-dif-contrast-project-migration.R |only tests/testthat/test-dif-contrast-support.R |only tests/testthat/test-dif-contrasts.R | 145 tests/testthat/test-dif-efrm-factor-roles.R |only tests/testthat/test-dif-factor-handoff.R |only tests/testthat/test-dif-joint-bootstrap.R |only tests/testthat/test-dif-joint-incomplete.R |only tests/testthat/test-dif-procedure.R | 151 tests/testthat/test-dif-within-estimability.R |only tests/testthat/test-dimensionality-sample.R |only tests/testthat/test-distractor-report-refusal.R |only tests/testthat/test-efrm-full-bootstrap-identification.R |only tests/testthat/test-efrm-inference-availability.R |only tests/testthat/test-efrm-link-graph.R |only tests/testthat/test-efrm.R | 379 + tests/testthat/test-equating-shift-uncertainty.R |only tests/testthat/test-explanatory-candidate-stability.R |only tests/testthat/test-explanatory-coefficient-labels.R |only tests/testthat/test-explanatory-formula-offsets.R |only tests/testthat/test-explanatory-item-names.R |only tests/testthat/test-explanatory-mc-refits.R |only tests/testthat/test-explanatory-offsets.R |only tests/testthat/test-explanatory-units.R |only tests/testthat/test-explanatory-unused-predictors.R |only tests/testthat/test-explanatory.R | 291 tests/testthat/test-export-safety-and-external-dif.R |only tests/testthat/test-extensions.R | 153 tests/testthat/test-fable-regressions.R |only tests/testthat/test-factor-cell-identity.R |only tests/testthat/test-factor-item-name-disambiguation.R |only tests/testthat/test-fit-bootstrap.R |only tests/testthat/test-fit-residual.R | 3 tests/testthat/test-format.R | 43 tests/testthat/test-frame-invariance-support.R |only tests/testthat/test-frame-likelihood-curvature.R |only tests/testthat/test-frame-refits.R | 275 tests/testthat/test-gaps.R | 2704 ++++++++ tests/testthat/test-inference-audit-round.R |only tests/testthat/test-information-patterns.R |only tests/testthat/test-input-validation.R | 388 + tests/testthat/test-interval-policy.R |only tests/testthat/test-item-disc.R | 34 tests/testthat/test-legacy-refit-restrictions.R |only tests/testthat/test-lr-fitted-restrictions.R |only tests/testthat/test-lr-refit-provenance.R |only tests/testthat/test-magnitudes.R | 240 tests/testthat/test-mc-scoring.R | 177 tests/testthat/test-mfrm-factor-collapse.R |only tests/testthat/test-missing.R | 91 tests/testthat/test-model-coherence.R |only tests/testthat/test-output-tables.R | 511 + tests/testthat/test-parallel-rng.R |only tests/testthat/test-pcml-pc.R | 39 tests/testthat/test-person-scoring-units.R |only tests/testthat/test-person-weights.R |only tests/testthat/test-plots.R | 399 + tests/testthat/test-project-frame-calibration.R |only tests/testthat/test-project-person-scoring.R |only tests/testthat/test-recovery-estimands.R |only tests/testthat/test-relax-structure.R |only tests/testthat/test-report-probability-format.R |only tests/testthat/test-resolve-factor-model.R |only tests/testthat/test-resolve-frames.R | 4 tests/testthat/test-rng-stream-restoration.R |only tests/testthat/test-scored-missing-codes.R |only tests/testthat/test-shiny-help.R | 161 tests/testthat/test-sim-recovery-boundaries.R |only tests/testthat/test-simulate.R | 913 ++ tests/testthat/test-statistical-validity.R | 473 + tests/testthat/test-structural-factor-roles.R |only tests/testthat/test-structural-score-audit.R |only tests/testthat/test-subtests.R | 23 tests/testthat/test-summary-total-probability.R |only tests/testthat/test-sweep-app.R |only tests/testthat/test-sweep-simval.R |only tests/testthat/test-tailored-fixed-calibration.R |only tests/testthat/test-tailored-provenance.R |only tests/testthat/test-tailored-scoring-records.R |only tests/testthat/test-validation-regressions.R |only tests/testthat/test-varying-person-units.R |only tests/testthat/test-vignette-records.R |only tests/testthat/test-weighted-project-migration.R |only tests/testthat/test-wle-multiple-maxima.R |only tests/testthat/test-wright-map.R | 51 tools/screenshots.R |only vignettes/.install_extras |only vignettes/data-structures.Rmd |only vignettes/dif-repeated-measures.Rmd | 54 vignettes/explanatory-models.Rmd | 40 vignettes/extended-frame-reference.Rmd | 124 vignettes/figures |only vignettes/many-facet.Rmd | 19 vignettes/paired-comparisons.Rmd | 269 vignettes/plant-and-detect.Rmd | 97 vignettes/precomputed |only vignettes/precomputed.R |only vignettes/rasch-workflow.Rmd | 297 300 files changed, 38703 insertions(+), 5816 deletions(-)
Title: Checks Session Status
Description: Provides tools for checking whether an R session is in a clean state,
including the global environment, attached packages, loaded namespaces,
attached environments, session run time, R options, locale settings, and
system environment variables. Intended as a safer replacement for the
common 'rm(list = ls())' idiom: rather than silently wiping the global
environment, sessioncheck() surfaces problems so the user can make an
informed decision. The package also supplies tools for documenting the
session state, to aid in the overall process.
Author: Danielle Navarro [aut, cre, cph] ,
Meghan Harris [ctb]
Maintainer: Danielle Navarro <djnavarro@protonmail.com>
Diff between sessioncheck versions 0.1.1 dated 2026-07-28 and 0.2.0 dated 2026-09-13
sessioncheck-0.1.1/sessioncheck/R/api.R |only sessioncheck-0.1.1/sessioncheck/R/internal.R |only sessioncheck-0.2.0/sessioncheck/DESCRIPTION | 13 sessioncheck-0.2.0/sessioncheck/MD5 | 60 - sessioncheck-0.2.0/sessioncheck/NAMESPACE | 9 sessioncheck-0.2.0/sessioncheck/NEWS.md | 43 sessioncheck-0.2.0/sessioncheck/R/class.R | 249 ++++ sessioncheck-0.2.0/sessioncheck/R/display.R |only sessioncheck-0.2.0/sessioncheck/R/sessioncheck.R |only sessioncheck-0.2.0/sessioncheck/R/sessionstate-format.R |only sessioncheck-0.2.0/sessioncheck/R/sessionstate.R |only sessioncheck-0.2.0/sessioncheck/R/sessionstatediff-format.R |only sessioncheck-0.2.0/sessioncheck/R/sessionstatediff.R |only sessioncheck-0.2.0/sessioncheck/R/utils.R | 92 - sessioncheck-0.2.0/sessioncheck/R/validators.R |only sessioncheck-0.2.0/sessioncheck/README.md | 31 sessioncheck-0.2.0/sessioncheck/inst/WORDLIST | 19 sessioncheck-0.2.0/sessioncheck/man/check_attached_environments.Rd | 25 sessioncheck-0.2.0/sessioncheck/man/check_attached_packages.Rd | 27 sessioncheck-0.2.0/sessioncheck/man/check_globalenv_objects.Rd | 33 sessioncheck-0.2.0/sessioncheck/man/check_loaded_namespaces.Rd | 27 sessioncheck-0.2.0/sessioncheck/man/check_required_locale.Rd | 36 sessioncheck-0.2.0/sessioncheck/man/check_required_options.Rd | 55 - sessioncheck-0.2.0/sessioncheck/man/check_required_sysenv.Rd | 38 sessioncheck-0.2.0/sessioncheck/man/check_sessiontime.Rd | 25 sessioncheck-0.2.0/sessioncheck/man/check_working_directory.Rd |only sessioncheck-0.2.0/sessioncheck/man/coercion_methods.Rd | 57 - sessioncheck-0.2.0/sessioncheck/man/compare_sessionstates.Rd |only sessioncheck-0.2.0/sessioncheck/man/display_methods.Rd | 194 +++ sessioncheck-0.2.0/sessioncheck/man/sessioncheck.Rd | 60 - sessioncheck-0.2.0/sessioncheck/man/sessionstate.Rd |only sessioncheck-0.2.0/sessioncheck/tests/testthat/test-api.R | 173 +++ sessioncheck-0.2.0/sessioncheck/tests/testthat/test-class.R | 51 sessioncheck-0.2.0/sessioncheck/tests/testthat/test-other.R | 549 +++++++++- sessioncheck-0.2.0/sessioncheck/tests/testthat/test-sessioncheckers.R | 66 - sessioncheck-0.2.0/sessioncheck/tests/testthat/test-sessionstate.R |only sessioncheck-0.2.0/sessioncheck/tests/testthat/test-sessionstatediff.R |only sessioncheck-0.2.0/sessioncheck/tests/testthat/test-validators.R | 47 38 files changed, 1754 insertions(+), 225 deletions(-)
Title: 1d Goodness of Fit Tests
Description: Routines that allow the user to run a large number of goodness-of-fit tests.
It allows for data to be continuous or discrete. It includes routines to estimate
the power of the tests and display them as a power graph.
The routine run.studies allows a user to quickly study the power of a new method and
how it compares to some of the standard ones.
Author: Wolfgang Rolke [aut, cre]
Maintainer: Wolfgang Rolke <wolfgang.rolke@upr.edu>
Diff between Rgof versions 3.3.0 dated 2025-06-16 and 4.0.0 dated 2026-09-13
Rgof-3.3.0/Rgof/R/case.studies.R |only Rgof-3.3.0/Rgof/R/signif.digits.R |only Rgof-3.3.0/Rgof/data/power_studies_results.rda |only Rgof-3.3.0/Rgof/man/case.studies.Rd |only Rgof-3.3.0/Rgof/man/power_studies_results.Rd |only Rgof-3.3.0/Rgof/man/signif.digits.Rd |only Rgof-4.0.0/Rgof/DESCRIPTION | 11 Rgof-4.0.0/Rgof/MD5 | 95 + Rgof-4.0.0/Rgof/NAMESPACE | 28 Rgof-4.0.0/Rgof/NEWS.md | 4 Rgof-4.0.0/Rgof/R/case_studies.R |only Rgof-4.0.0/Rgof/R/chi_power_disc.R | 2 Rgof-4.0.0/Rgof/R/data.R | 27 Rgof-4.0.0/Rgof/R/extra.R | 6 Rgof-4.0.0/Rgof/R/gof_power.R | 233 ++- Rgof-4.0.0/Rgof/R/gof_power_adaptive.R |only Rgof-4.0.0/Rgof/R/gof_test.R | 522 +++++--- Rgof-4.0.0/Rgof/R/gof_test_adjusted_pvalue.R | 93 - Rgof-4.0.0/Rgof/R/helper_functions.R |only Rgof-4.0.0/Rgof/R/make_bins_cont.R | 2 Rgof-4.0.0/Rgof/R/mle.R |only Rgof-4.0.0/Rgof/R/myTS.R |only Rgof-4.0.0/Rgof/R/plot_power.R | 81 - Rgof-4.0.0/Rgof/R/power_newtest.R | 7 Rgof-4.0.0/Rgof/R/run.studies.R | 310 +---- Rgof-4.0.0/Rgof/R/signif_digits.R |only Rgof-4.0.0/Rgof/R/test_methods.R | 2 Rgof-4.0.0/Rgof/build/vignette.rds |binary Rgof-4.0.0/Rgof/data/case_studies_sample_sizes.rda |only Rgof-4.0.0/Rgof/data/funs_list.rda |only Rgof-4.0.0/Rgof/data/power.uniform.linear.rda |only Rgof-4.0.0/Rgof/data/power_study.rda |only Rgof-4.0.0/Rgof/inst/doc/Rgof.R | 79 - Rgof-4.0.0/Rgof/inst/doc/Rgof.Rmd | 274 +++- Rgof-4.0.0/Rgof/inst/doc/Rgof.html | 893 +++++++++------ Rgof-4.0.0/Rgof/man/Rgof-package.Rd | 5 Rgof-4.0.0/Rgof/man/as.data.frame.Rgof_power_adaptive.Rd |only Rgof-4.0.0/Rgof/man/as.data.frame.Rgof_test.Rd |only Rgof-4.0.0/Rgof/man/case_studies.Rd |only Rgof-4.0.0/Rgof/man/case_studies_sample_sizes.Rd |only Rgof-4.0.0/Rgof/man/funs_list.Rd |only Rgof-4.0.0/Rgof/man/gof_power.Rd | 21 Rgof-4.0.0/Rgof/man/gof_power_adaptive.Rd |only Rgof-4.0.0/Rgof/man/gof_test.Rd | 88 - Rgof-4.0.0/Rgof/man/gof_test_adjusted_pvalue.Rd | 4 Rgof-4.0.0/Rgof/man/makeTSextra.Rd |only Rgof-4.0.0/Rgof/man/maketypeTS.Rd |only Rgof-4.0.0/Rgof/man/mledexp.Rd |only Rgof-4.0.0/Rgof/man/mlemix.Rd |only Rgof-4.0.0/Rgof/man/mletexp.Rd |only Rgof-4.0.0/Rgof/man/myTS_cont.Rd |only Rgof-4.0.0/Rgof/man/myTS_disc.Rd |only Rgof-4.0.0/Rgof/man/power.uniform.linear.Rd |only Rgof-4.0.0/Rgof/man/power_study.Rd |only Rgof-4.0.0/Rgof/man/print.Rgof_power_adaptive.Rd |only Rgof-4.0.0/Rgof/man/print.Rgof_test.Rd |only Rgof-4.0.0/Rgof/man/run.studies.Rd | 62 - Rgof-4.0.0/Rgof/man/signif_digits.Rd |only Rgof-4.0.0/Rgof/man/summary.Rgof_test.Rd |only Rgof-4.0.0/Rgof/src/TS_cont.cpp | 5 Rgof-4.0.0/Rgof/src/calcTS.cpp | 17 Rgof-4.0.0/Rgof/tests |only Rgof-4.0.0/Rgof/vignettes/Rgof.Rmd | 274 +++- 63 files changed, 1885 insertions(+), 1260 deletions(-)
Title: Interventional Prediction Evaluation
Description: Provides methods to evaluate predictive performance of models that
estimate risks under hypothetical intervention scenarios
(interventional/causal/counterfactual predictions) with observational data
subject to treatment-outcome confounding. Inverse probability of treatment
weighting (IPTW) is used to construct a pseudopopulation in which all
individuals receive a specified intervention, enabling assessment of
agreement between predicted risks under the intervention and observed
outcomes in the pseudo-population corresponding to that intervention.
Supports interventions with binary or categorical treatment levels, applied
at a single time point. Performance measures supported are AUC (Area
Under the receiving operating characteristic Curve), Brier score,
observed-expected ratio, and calibration plots. Methods implemented in this
package are based on work by Keogh and Van Geloven (2024)
<DOI:10.1097/EDE.0000000000001713>.
Author: Jasper van Egeraat [aut, cre],
Nan van Geloven [aut, cph],
Ruth Keogh [aut, cph],
Leiden University Medical Center [fnd]
Maintainer: Jasper van Egeraat <j.w.a.van_egeraat@lumc.nl>
Diff between ipeval versions 0.1.1 dated 2026-08-29 and 0.1.2 dated 2026-09-13
DESCRIPTION | 6 ++-- MD5 | 16 ++++++------ NEWS.md | 4 +++ R/bootstrap.R | 9 ++++++- R/helpers.R | 8 ++++++ R/ip_score.R | 10 ++++---- inst/doc/time-to-event.html | 12 ++++----- man/ip_score.Rd | 9 ++++--- tests/testthat/test-ip_score.R | 51 ++++++++++++++++++++++++++++++++++------- 9 files changed, 91 insertions(+), 34 deletions(-)
Title: A Text Mining Workflow Tool
Description: Provides a text mining and natural language processing
workflow for documents. Includes preprocessing
via 'quanteda', lexical analysis (term frequency-inverse document
frequency, log-odds ratios, lexical diversity) via 'tidytext',
topic modeling via 'stm' and the 'BERTopic' approach, semantic
similarity and document clustering on transformer representations,
an interactive 'Shiny' interface with 'ggplot2' visualization,
optional 'spaCy' preprocessing, and local 'sentence-transformers'
or web-based ('OpenAI', 'Gemini') model
providers for retrieval-augmented generation, as described in
Shin et al. (2026) <doi:10.1177/07319487251412879>.
Author: Mikyung Shin [aut, cre]
Maintainer: Mikyung Shin <shin.mikyung@gmail.com>
Diff between TextAnalysisR versions 0.1.4 dated 2026-07-27 and 0.1.5 dated 2026-09-13
DESCRIPTION | 27 MD5 | 179 NAMESPACE | 17 NEWS.md | 78 R/analytic_memos.R |only R/coding_rounds.R |only R/lexical_analysis.R | 4 R/pattern_confirmation.R |only R/preprocessing.R | 3054 - R/qualitative_coding.R |only R/semantic_analysis.R | 39 R/topic_modeling.R | 319 R/utils.R | 6660 +- README.md | 157 build/partial.rdb |binary build/vignette.rds |binary inst/TextAnalysisR.app/global.R | 721 inst/TextAnalysisR.app/markdown/about.md | 116 inst/TextAnalysisR.app/markdown/ai_integration.md | 106 inst/TextAnalysisR.app/markdown/cybersecurity.md | 54 inst/TextAnalysisR.app/markdown/features.md | 58 inst/TextAnalysisR.app/markdown/guides/stm_guide.html | 1 inst/TextAnalysisR.app/markdown/installation_lexical.md | 58 inst/TextAnalysisR.app/markdown/installation_semantic.md | 66 inst/TextAnalysisR.app/markdown/language.md |only inst/TextAnalysisR.app/markdown/links.md | 42 inst/TextAnalysisR.app/markdown/logo.png |only inst/TextAnalysisR.app/markdown/support.md | 38 inst/TextAnalysisR.app/markdown/web_accessibility.md | 54 inst/TextAnalysisR.app/server.R |43034 +++++++-------- inst/TextAnalysisR.app/ui.R | 69 inst/TextAnalysisR.app/www/script.js | 154 inst/TextAnalysisR.app/www/styles.css | 75 inst/doc/ai_integration.html | 2 inst/doc/cybersecurity.Rmd | 10 inst/doc/cybersecurity.html | 12 inst/doc/installation.R | 6 inst/doc/installation.Rmd | 13 inst/doc/installation.html | 14 inst/doc/lexical_analysis.Rmd | 4 inst/doc/lexical_analysis.html | 15 inst/doc/multimodal_analysis.Rmd | 4 inst/doc/multimodal_analysis.html | 7 inst/doc/preprocessing.Rmd | 36 inst/doc/preprocessing.html | 59 inst/doc/python_environment.Rmd | 4 inst/doc/python_environment.html | 6 inst/doc/qualitative_coding.R |only inst/doc/qualitative_coding.Rmd |only inst/doc/qualitative_coding.html |only inst/doc/quickstart.R | 3 inst/doc/quickstart.Rmd | 7 inst/doc/quickstart.html | 9 inst/doc/semantic_analysis.Rmd | 2 inst/doc/semantic_analysis.html | 20 inst/doc/topic_modeling.R | 20 inst/doc/topic_modeling.Rmd | 382 inst/doc/topic_modeling.html | 193 man/add_memo.Rd |only man/align_categories.Rd |only man/apply_codes.Rd |only man/assign_noise.Rd |only man/call_llm_api.Rd | 4 man/cluster_embedding_topics.Rd |only man/cluster_embeddings.Rd | 2 man/code_agreement.Rd |only man/code_retest.Rd |only man/detect_language.Rd |only man/detect_language_llm.Rd |only man/estimate_topic_effects.Rd |only man/find_optimal_k.Rd | 5 man/fit_embedding_model.Rd | 4 man/fit_embedding_topics.Rd | 4 man/fit_semantic_model.Rd | 2 man/get_memos.Rd |only man/lexical_frequency_analysis.Rd | 2 man/log_round.Rd |only man/merge_codes.Rd |only man/plot_cluster_terms.Rd | 2 man/plot_topic_effects_categorical.Rd | 2 man/plot_topic_effects_continuous.Rd | 2 man/prep_texts.Rd | 246 man/round_summary.Rd |only man/run_neural_topics_internal.Rd | 15 man/semantic_similarity_analysis.Rd | 2 man/sentiment_embedding_analysis.Rd | 4 man/split_texts.Rd |only man/uncoded_units.Rd |only man/validate_categories.Rd |only tests/testthat/test-coding-trail.R |only tests/testthat/test-detect-language.R |only tests/testthat/test-math-mode.R |only tests/testthat/test-pattern-confirmation.R |only tests/testthat/test-prevalence-formula.R |only tests/testthat/test-qualitative-coding.R |only tests/testthat/test-sentiment-sign.R |only tests/testthat/test-statistical-methods.R | 2 tests/testthat/test-topic-effects.R |only vignettes/cybersecurity.Rmd | 10 vignettes/installation.Rmd | 13 vignettes/lexical_analysis.Rmd | 4 vignettes/multimodal_analysis.Rmd | 4 vignettes/preprocessing.Rmd | 36 vignettes/python_environment.Rmd | 4 vignettes/qualitative_coding.Rmd |only vignettes/quickstart.Rmd | 7 vignettes/semantic_analysis.Rmd | 2 vignettes/topic_modeling.Rmd | 382 108 files changed, 29089 insertions(+), 27679 deletions(-)
Title: Cluster Gauss-Newton Method
Description: Find multiple solutions of a nonlinear least squares problem. Cluster Gauss-Newton method does not assume uniqueness of the solution of the nonlinear least squares problem and compute multiple minimizers. Please cite the following paper when this software is used in your research: Aoki et al. (2020) <doi:10.1007/s11081-020-09571-2>. Cluster Gauss–Newton method. Optimization and Engineering, 1-31. Please cite the following paper when profile likelihood plot is drawn with this software and used in your research: Aoki and Sugiyama (2024) <doi:10.1002/psp4.13055>. Cluster Gauss-Newton method for a quick approximation of profile likelihood: With application to physiologically-based pharmacokinetic models. CPT Pharmacometrics Syst Pharmacol.13(1):54-67. GPT based helper bot available at <https://chatgpt.com/g/g-684936db9e748191a2796debb00cd755-cluster-gauss-newton-method-helper-bot> .
Author: Yasunori Aoki [aut, cre]
Maintainer: Yasunori Aoki <yaoki@uwaterloo.ca>
Diff between CGNM versions 0.9.3 dated 2026-01-08 and 0.10.0 dated 2026-09-13
DESCRIPTION | 15 LICENSE | 4 MD5 | 98 NAMESPACE | 78 R/CGNM-package.R |only R/CGNM_result-class.R |only R/Cluster_Gauss_Newton_method.R | 134 R/PostProcess.R | 6028 +++++----- R/generateCGNM_script.R |only R/shinyCGNM_related.R | 282 README.md |only build/partial.rdb |only inst/doc/CGNM-vignette.Rmd | 490 inst/doc/CGNM-vignette.html | 282 inst/shinyCGNM/CodeGenerationRelatedFunctions.R | 1510 +- inst/shinyCGNM/rsconnect/shinyapps.io/bluetreeme/shinyCGNM.dcf | 24 inst/shinyCGNM/server.R | 5338 ++++---- inst/shinyCGNM/ui.R | 544 man/CGNM-package.Rd |only man/CGNM_result-class.Rd |only man/Cluster_Gauss_Newton_Bootstrap_method.Rd | 145 man/Cluster_Gauss_Newton_EBE_method.Rd | 149 man/Cluster_Gauss_Newton_method.Rd | 326 man/acceptedApproximateMinimizers.Rd | 130 man/acceptedIndices.Rd | 118 man/acceptedIndices_binary.Rd | 118 man/acceptedMaxSSR.Rd | 118 man/as_CGNM_result_S4.Rd |only man/bestApproximateMinimizers.Rd | 112 man/compare_profileLikelihood.Rd | 132 man/generateCGNM_script.Rd |only man/make_ShinyCGNM_doseData.Rd | 89 man/make_ShinyCGNM_initialCondition.Rd |only man/make_ShinyCGNM_observationData.Rd | 96 man/make_ShinyCGNM_parameterInfo.Rd |only man/make_ShinyCGNM_simulationTimepoints.Rd |only man/plot_2DprofileLikelihood.Rd | 180 man/plot_Rank_SSR.Rd | 94 man/plot_SSR_parameterValue.Rd | 118 man/plot_SSRsurface.Rd | 150 man/plot_goodnessOfFit.Rd | 140 man/plot_paraDistribution_byHistogram.Rd | 132 man/plot_paraDistribution_byViolinPlots.Rd | 126 man/plot_parameterValue_scatterPlots.Rd | 94 man/plot_profileLikelihood.Rd | 132 man/plot_simulationMatrixWithCI.Rd | 148 man/plot_simulationWithCI.Rd | 152 man/table_parameterSummary.Rd | 128 man/table_profileLikelihoodConfidenceInterval.Rd | 138 man/topIndices.Rd | 100 tests |only vignettes/CGNM-vignette.Rmd | 490 52 files changed, 9551 insertions(+), 9131 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-27 1.0.2
Title: Static Library and Headers for 'OpenEXR' Image I/O
Description: Provides the 'OpenEXR' static library and 'C++' headers
for high-dynamic-range image I/O (see <https://openexr.com/>)
needed to link R packages against the 'OpenEXR' library, along
with a basic R interface to load 'EXR' images.
Author: Tyler Morgan-Wall [aut, cre] ,
Aaron Demolder [ctb, cph],
Abe Fettig [ctb, cph],
Aloys Baillet [ctb, cph],
Andre Mazzone [ctb, cph],
Andrew Kunz [ctb, cph],
Anton Dukhovnikov [ctb, cph],
Antonio Rojas [ctb, cph],
Aras Pranckevicius [ctb, cph],
Arkady [...truncated...]
Maintainer: Tyler Morgan-Wall <tylermw@gmail.com>
Diff between libopenexr versions 3.4.12-4 dated 2026-05-31 and 3.4.12-6 dated 2026-09-13
DESCRIPTION | 6 MD5 | 19 - R/read_write_exr.R | 274 +++++++++++++++--- man/read_exr.Rd | 12 man/write_exr.Rd | 20 + src/OpenEXR/src/lib/IlmThread/IlmThreadProcessGroup.h | 2 src/r-api.cpp | 200 ++++++++++++- tests |only tools/config.R | 259 +++++++++-------- tools/remove_stderr.R | 49 +-- tools/search-replace.R | 102 +++--- 11 files changed, 689 insertions(+), 254 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-03 1.3-1
2023-07-15 1.3
2022-05-25 1.2-6
2019-07-27 1.2-5
2019-01-22 1.2-4
2018-07-25 1.2
2018-04-09 1.1
2016-09-03 1.0
2015-05-03 0.7-5
2014-12-10 0.7-4
2013-12-12 0.7-0
2013-03-11 0.6-2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-05-05 0.6.0
2024-09-16 0.5.0
2023-03-08 0.4.0
2022-06-09 0.3.4
2022-01-05 0.3.3
2022-01-04 0.3.2
2021-04-03 0.3.1
2021-04-01 0.3.0
2020-01-29 0.2.0
2020-01-08 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-12-06 0.1.3
2025-10-28 0.1.2
Title: Language Server Protocol
Description: An implementation of the Language Server Protocol
for R. The Language Server protocol is used by an editor client to
integrate features like auto completion. See
<https://microsoft.github.io/language-server-protocol/> for details.
Author: Randy Lai [aut, cre],
Kun Ren [ctb]
Maintainer: Randy Lai <randy.cs.lai@gmail.com>
Diff between languageserver versions 0.3.18 dated 2026-05-02 and 0.3.19 dated 2026-09-13
DESCRIPTION | 10 MD5 | 175 +++-- NEWS.md | 94 +++ R/call_hierarchy.R | 682 ++++++++++++++++------- R/capabilities.R | 33 - R/code_action.R | 590 ++++++++++++++++--- R/code_lens.R |only R/completion.R | 569 +++++++++++++++---- R/definition.R | 18 R/diagnostics.R | 57 + R/document.R | 336 +++++++++-- R/folding.R | 86 +- R/formatting.R | 364 ++++++++++-- R/handlers-general.R | 21 R/handlers-langfeatures.R | 141 ++++ R/handlers-textsync.R | 65 ++ R/handlers-workspace.R | 101 ++- R/highlight.R | 30 - R/hover.R | 108 +-- R/index.R |only R/inlay_hint.R |only R/inline_value.R |only R/interfaces.R | 2 R/languagebase.R | 4 R/languageserver.R | 221 ++++++- R/link.R | 64 +- R/linked_editing.R |only R/literate.R |only R/namespace.R | 228 ++++--- R/protocol.R | 17 R/provider_index.R |only R/refactor.R |only R/references.R | 255 ++++++++ R/rename.R | 12 R/section.R | 84 -- R/selection.R | 1 R/semantic.R | 288 +++++++++ R/settings.R | 27 R/signature.R | 395 ++----------- R/symbol.R | 16 R/task.R | 446 ++++++++++++--- R/type_hierarchy.R | 124 ++-- R/utils.R | 232 +++++-- R/workspace.R | 398 ++++++++++++- README.md | 49 + inst/benchmarks |only man/document_code_action_reply.Rd | 10 man/languageserver-package.Rd | 5 src/call_hierarchy.c |only src/call_hierarchy.h |only src/completion.c |only src/completion.h |only src/index.c |only src/index.h |only src/json.c |only src/json.h |only src/languageserver.c | 22 src/navigation.c |only src/navigation.h |only src/provider_index.c |only src/search.c | 94 +++ src/search.h | 3 src/semantic.c | 132 ++++ src/semantic.h | 5 src/signature.c |only src/signature.h |only tests/testthat/helper-provider.R |only tests/testthat/helper-utils.R | 13 tests/testthat/test-cache.R |only tests/testthat/test-call-hierarchy-performance.R |only tests/testthat/test-call-hierarchy.R | 94 +++ tests/testthat/test-call-scan-cache.R |only tests/testthat/test-code-action.R | 318 ++++++++++ tests/testthat/test-code-lens.R |only tests/testthat/test-color.R | 21 tests/testthat/test-completion-typing.R |only tests/testthat/test-completion.R | 346 +++++++++++ tests/testthat/test-document-core.R |only tests/testthat/test-formatting.R | 227 +++++++ tests/testthat/test-handlers-langfeatures.R |only tests/testthat/test-handlers-textsync.R |only tests/testthat/test-hover.R | 109 +++ tests/testthat/test-index.R |only tests/testthat/test-inlay-hint.R |only tests/testthat/test-inline-value.R |only tests/testthat/test-intelligence-performance.R |only tests/testthat/test-interfaces.R |only tests/testthat/test-langauagecilent.R | 15 tests/testthat/test-languagebase.R |only tests/testthat/test-languageserver-core.R |only tests/testthat/test-link-core.R |only tests/testthat/test-linked-editing.R |only tests/testthat/test-lintr.R | 122 ++++ tests/testthat/test-literate.R |only tests/testthat/test-lsp-3-18.R |only tests/testthat/test-native-utilities.R |only tests/testthat/test-navigation-index.R |only tests/testthat/test-performance-index.R |only tests/testthat/test-range-index.R |only tests/testthat/test-refactor.R |only tests/testthat/test-references.R | 77 ++ tests/testthat/test-response-json.R |only tests/testthat/test-selection.R | 18 tests/testthat/test-semantic-tokens.R | 425 ++++++++++++++ tests/testthat/test-settings-log.R |only tests/testthat/test-signature.R | 112 +++ tests/testthat/test-symbol.R | 68 ++ tests/testthat/test-task-supersession.R |only tests/testthat/test-task.R | 339 +++++++++++ tests/testthat/test-type-hierarchy-parsing.R |only tests/testthat/test-type-hierarchy.R | 88 ++ tests/testthat/test-utils.R |only tests/testthat/test-workspace-core.R |only 113 files changed, 7430 insertions(+), 1576 deletions(-)
More information about languageserver at CRAN
Permanent link