Title: Panel Unit Root Test Based on Recursive Detrending
Description: Implements the recursively detrended panel unit root tests proposed
by Westerlund (2015) <doi:10.1016/j.jeconom.2014.06.015>. Two variants are
provided: the basic t-REC test assuming iid errors, and the robust t-RREC
test that accounts for serial correlation, cross-sectional dependence, and
heteroskedasticity via defactoring and BIC-selected lag augmentation. Both
tests have a standard normal null distribution requiring no mean or variance
correction. The panel must be strongly balanced.
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between xtrec versions 1.0.0 dated 2026-03-29 and 1.0.1 dated 2026-09-30
DESCRIPTION | 8 ++++---- MD5 | 9 +++++---- NEWS.md | 6 +++++- R/xtrec.R | 2 +- build |only man/xtrec.Rd | 2 +- 6 files changed, 16 insertions(+), 11 deletions(-)
Title: Panel Cointegration Tests with Structural Breaks
Description: Implements panel cointegration tests allowing for structural breaks
and cross-section dependence following the methodology of Banerjee and
Carrion-i-Silvestre (2015) <doi:10.1002/jae.2348>. The package provides
iterative factor-break estimation, individual ADF tests on defactored
residuals, standardized panel test statistics, and the Bai and Ng (2004)
<doi:10.1111/j.1468-0262.2004.00528.x> MQ test for identifying common
stochastic trends. Supports five model specifications with varying
deterministic components and break structures.
Author: Muhammad Alkhalaf [aut, cre, cph] ,
Anindya Banerjee [ctb] ,
Josep Lluis Carrion-i-Silvestre [ctb]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between xtbreakcoint versions 1.0.4 dated 2026-03-16 and 1.0.6 dated 2026-09-30
xtbreakcoint-1.0.4/xtbreakcoint/R/adf_tests.R |only xtbreakcoint-1.0.4/xtbreakcoint/R/factor_estimation.R |only xtbreakcoint-1.0.4/xtbreakcoint/R/mq_test.R |only xtbreakcoint-1.0.6/xtbreakcoint/DESCRIPTION | 10 xtbreakcoint-1.0.6/xtbreakcoint/MD5 | 21 xtbreakcoint-1.0.6/xtbreakcoint/NAMESPACE | 20 xtbreakcoint-1.0.6/xtbreakcoint/NEWS.md | 15 xtbreakcoint-1.0.6/xtbreakcoint/R/bcs_engine.R |only xtbreakcoint-1.0.6/xtbreakcoint/R/xtbreakcoint.R | 138 ++--- xtbreakcoint-1.0.6/xtbreakcoint/README.md | 198 +++---- xtbreakcoint-1.0.6/xtbreakcoint/build/partial.rdb |binary xtbreakcoint-1.0.6/xtbreakcoint/inst |only xtbreakcoint-1.0.6/xtbreakcoint/man/xtbreakcoint-package.Rd | 98 +-- xtbreakcoint-1.0.6/xtbreakcoint/man/xtbreakcoint.Rd | 302 ++++++------ 14 files changed, 397 insertions(+), 405 deletions(-)
Title: Weighting for Covariate Balance in Observational Studies
Description: Generates balancing weights for causal effect estimation in observational studies with
binary, multi-category, or continuous point or longitudinal treatments by easing and
extending the functionality of several R packages and providing in-house estimation methods.
Available methods include those that rely on parametric modeling, optimization, and machine learning. Also
allows for assessment of weights and checking of covariate balance by interfacing directly
with the 'cobalt' package. Methods for estimating weighted regression models that take into account
uncertainty in the estimation of the weights via M-estimation or bootstrapping are available. See the vignette "Installing Supporting Packages" for instructions on how
to install any optional package 'WeightIt' uses, including those that may not be on CRAN.
Author: Noah Greifer [aut, cre, cph]
Maintainer: Noah Greifer <noah.greifer@gmail.com>
Diff between WeightIt versions 2.0.0 dated 2026-08-03 and 2.1.0 dated 2026-09-30
DESCRIPTION | 18 - MD5 | 194 ++++++------- NAMESPACE | 20 - NEWS.md | 62 ++++ R/ESS.R | 5 R/anova.glm_weightit.R | 4 R/as.weightit.R | 5 R/calibrate.R | 9 R/cens.R | 40 +- R/coxph_weightit.R | 2 R/dist_functions.R | 2 R/functions_for_processing.R | 100 ++++--- R/get_w_from_ps.R | 19 - R/glm_weightit-methods.R | 2 R/glm_weightit.R | 2 R/glm_weightit_helpers.R | 2 R/make_full_rank.R | 6 R/msmdata.R | 4 R/ordinal_weightit.R | 5 R/plot.weightit.R | 2 R/predict.glm_weightit.R | 2 R/sbps.R | 11 R/summary.weightit.R | 356 +++++++++++++++++++++---- R/treat.R | 36 +- R/trim.R | 20 - R/utils.R | 112 ++++--- R/weightit.R | 184 ++++++++---- R/weightit.fit.R | 6 R/weightit2bart.R | 87 +++++- R/weightit2cbps.R | 15 - R/weightit2cfd.R | 27 + R/weightit2ebal.R | 46 ++- R/weightit2energy.R | 42 +- R/weightit2gbm.R | 61 +++- R/weightit2glm.R | 75 +++-- R/weightit2ipt.R | 9 R/weightit2npcbps.R | 11 R/weightit2optweight.R | 16 - R/weightit2ps.R | 127 ++++++++ R/weightit2super.R | 9 R/weightit2user.R | 8 R/weightitMSM.R | 335 ++++++++++++----------- R/weightit_methods.R | 7 README.md | 44 +-- build/stage23.rdb |binary inst/doc/WeightIt.Rmd | 31 +- inst/doc/WeightIt.html | 253 +++++++++-------- inst/doc/estimating-effects.Rmd | 38 +- inst/doc/estimating-effects.html | 115 ++++---- inst/doc/installing-packages.Rmd | 20 + inst/doc/installing-packages.html | 38 +- man/ESS.Rd | 5 man/WeightIt-package.Rd | 4 man/anova.glm_weightit.Rd | 2 man/as.weightit.Rd | 5 man/calibrate.Rd | 4 man/dot-cens.Rd | 14 man/dot-weightit_methods.Rd | 3 man/get_w_from_ps.Rd | 4 man/glm_weightit.Rd | 2 man/make_full_rank.Rd | 6 man/method_bart.Rd | 26 + man/method_cbps.Rd | 8 man/method_cfd.Rd | 22 - man/method_ebal.Rd | 19 - man/method_energy.Rd | 37 +- man/method_gbm.Rd | 21 + man/method_glm.Rd | 47 ++- man/method_ipt.Rd | 4 man/method_npcbps.Rd | 9 man/method_optweight.Rd | 16 - man/method_ps.Rd |only man/method_super.Rd | 4 man/method_user.Rd | 8 man/msmdata.Rd | 4 man/plot.weightit.Rd | 2 man/predict.glm_weightit.Rd | 2 man/sbps.Rd | 2 man/summary.weightit.Rd | 42 ++ man/trim.Rd | 13 man/weightit.Rd | 72 ++--- man/weightit.fit.Rd | 4 man/weightitMSM.Rd | 48 +-- tests/testthat/test-calibrate.R | 12 tests/testthat/test-censoring.R | 330 ++++++++++++++++++++--- tests/testthat/test-get_w_from_ps.R | 32 ++ tests/testthat/test-internal_helpers.R |only tests/testthat/test-method_bart.R | 33 ++ tests/testthat/test-method_ebal.R | 65 ++++ tests/testthat/test-method_gbm.R | 16 + tests/testthat/test-method_glm.R | 33 ++ tests/testthat/test-sbps.R | 12 tests/testthat/test-stabilize.R |only tests/testthat/test-summary_plot_as_weightit.R | 180 ++++++++++++ tests/testthat/test-trim_ESS_full_rank.R | 28 + tests/testthat/test-weightitMSM.R | 47 +++ tests/testthat/test-weightitMSM_re.R |only vignettes/WeightIt.Rmd | 31 +- vignettes/estimating-effects.Rmd | 38 +- vignettes/installing-packages.Rmd | 20 + 100 files changed, 2787 insertions(+), 1193 deletions(-)
Title: Vehicle Routing Problem Solver Built on 'PyVRP'
Description: A 'tidyverse'-style interface to high-performance vehicle routing
problem (VRP) solving. Vendors the C++ core of the 'PyVRP' solver
(<https://github.com/PyVRP/PyVRP>) and rewires it through 'cpp11', with no
'Python' runtime dependency. Supports the capacitated VRP, time windows,
multiple depots, heterogeneous fleets, prize-collecting and multi-trip
variants, driven by an iterated local search metaheuristic.
Author: Andre Leite [aut, cre] ,
Marcos Wasiliew [aut] ,
Hugo Vasconcelos [aut] ,
Carlos Amorim [aut] ,
Diogo Bezerra [aut] ,
Julia Nascimento Barreto [aut] ,
Niels Wouda [ctb, cph] ,
Thibaut Vidal [cph] ,
ORTEC [cph]
Maintainer: Andre Leite <leite@castlab.org>
Diff between vrpr versions 0.2.0 dated 2026-09-28 and 0.2.1 dated 2026-09-30
DESCRIPTION | 37 +++++++++++++++++++------------- MD5 | 12 +++++----- NEWS.md | 9 +++++++ inst/CITATION | 4 +-- inst/COPYRIGHTS | 2 - man/vrpr-package.Rd | 13 ++++++----- src/vendor/pyvrp/search/SearchSpace.cpp | 3 +- 7 files changed, 50 insertions(+), 30 deletions(-)
Title: Diagnostics and Models for Underdispersed Count Data
Description: Tools for detecting and modeling underdispersion in count data
(conditional variance below the conditional mean), the case the Poisson and
negative binomial defaults cannot represent. Provides a screening diagnostic
that benchmarks at-risk dispersion against a zero-truncated Poisson,
regression-adjusted tests of equidispersion, and a dispersion profile that
compares the variance-to-mean curves of competing families against the data;
the continuous parameter binomial (CPB) and generalized event count (Katz)
regressions with zero-truncated, hurdle, and zero-inflated forms and
high-dimensional fixed effects with a split-panel jackknife bias correction;
matched Poisson, negative binomial, COM-Poisson (rate- and mean-parameterized),
generalized Poisson, gamma-count, and double Poisson regressions through the
same interface, with frequency weights, offsets, and analytic, robust, and
cluster-robust standard errors; bootstrap and profile-likelihood inference;
proper scoring rules, rootograms, [...truncated...]
Author: Benjamin E. Bagozzi [aut, cre]
Maintainer: Benjamin E. Bagozzi <bagozzib@udel.edu>
Diff between underdisp versions 0.1.1 dated 2026-09-28 and 0.1.2 dated 2026-09-30
DESCRIPTION | 6 +++--- MD5 | 12 +++++++----- NEWS.md | 21 +++++++++++++++++++++ src/cpb_fe.cpp | 10 ++++++---- src/cpb_pmf.h | 3 ++- src/gec_fe.cpp | 3 ++- src/support_cap.h |only tests/testthat/test-support-cap.R |only 8 files changed, 41 insertions(+), 14 deletions(-)
Title: Offline Taxonomic Name Matching Against Darwin Core Backbones
Description: Match taxonomic names against locally stored Darwin Core backbone
databases ('WFO', 'COL', 'GBIF', 'ITIS', 'NCBI Taxonomy', 'Open Tree of Life',
'WoRMS', 'Euro+Med', 'Species Fungorum', 'AlgaeBase', 'FishBase',
'SeaLifeBase', 'Reptile Database', 'LCVP', 'WCVP',
'Mammal Diversity Database', 'AviList', 'LPSN'). Provides offline fuzzy and
exact matching with synonym resolution, hybrid name detection, and a unified
output schema across all sources. All heavy computation runs in the 'vectra'
C11 columnar engine.
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between taxify versions 0.5.5 dated 2026-09-18 and 0.6.0 dated 2026-09-30
taxify-0.5.5/taxify/man/taxify_candidates.Rd |only taxify-0.6.0/taxify/DESCRIPTION | 10 taxify-0.6.0/taxify/MD5 | 232 taxify-0.6.0/taxify/NAMESPACE | 8 taxify-0.6.0/taxify/NEWS.md | 4552 +++++----- taxify-0.6.0/taxify/R/add-animaltraits.R | 4 taxify-0.6.0/taxify/R/add-common-names.R | 116 taxify-0.6.0/taxify/R/add-diaz-traits.R | 96 taxify-0.6.0/taxify/R/add-euromed-distribution.R |only taxify-0.6.0/taxify/R/add-glonaf.R | 123 taxify-0.6.0/taxify/R/add-wcvp.R | 133 taxify-0.6.0/taxify/R/backbones.R | 34 taxify-0.6.0/taxify/R/backend.R | 52 taxify-0.6.0/taxify/R/basionym.R | 3 taxify-0.6.0/taxify/R/browse.R | 189 taxify-0.6.0/taxify/R/cache.R | 36 taxify-0.6.0/taxify/R/cite.R | 73 taxify-0.6.0/taxify/R/disambiguate-authorship.R | 8 taxify-0.6.0/taxify/R/enrichment-meta.R | 11 taxify-0.6.0/taxify/R/enrichment.R | 1236 ++ taxify-0.6.0/taxify/R/gbif-request.R |only taxify-0.6.0/taxify/R/inspect.R | 9 taxify-0.6.0/taxify/R/pick.R | 354 taxify-0.6.0/taxify/R/reconcile.R | 16 taxify-0.6.0/taxify/R/taxify-package.R | 2 taxify-0.6.0/taxify/R/taxify-result.R | 26 taxify-0.6.0/taxify/R/taxify.R | 237 taxify-0.6.0/taxify/README.md | 21 taxify-0.6.0/taxify/build/vignette.rds |binary taxify-0.6.0/taxify/inst/doc/backbones.R | 5 taxify-0.6.0/taxify/inst/doc/backbones.Rmd | 1112 +- taxify-0.6.0/taxify/inst/doc/backbones.html | 1403 +-- taxify-0.6.0/taxify/inst/doc/custom-data.R | 16 taxify-0.6.0/taxify/inst/doc/custom-data.Rmd | 876 - taxify-0.6.0/taxify/inst/doc/custom-data.html | 695 - taxify-0.6.0/taxify/inst/doc/enrichments.R | 153 taxify-0.6.0/taxify/inst/doc/enrichments.Rmd | 1459 +-- taxify-0.6.0/taxify/inst/doc/enrichments.html | 2733 +++--- taxify-0.6.0/taxify/inst/doc/fuzzy-matching.R | 138 taxify-0.6.0/taxify/inst/doc/fuzzy-matching.Rmd | 1118 +- taxify-0.6.0/taxify/inst/doc/fuzzy-matching.html | 1027 +- taxify-0.6.0/taxify/inst/doc/gbif-requests.R |only taxify-0.6.0/taxify/inst/doc/gbif-requests.Rmd |only taxify-0.6.0/taxify/inst/doc/gbif-requests.html |only taxify-0.6.0/taxify/inst/doc/hybrids-and-aggregates.R | 22 taxify-0.6.0/taxify/inst/doc/hybrids-and-aggregates.Rmd | 882 - taxify-0.6.0/taxify/inst/doc/hybrids-and-aggregates.html | 695 - taxify-0.6.0/taxify/inst/doc/inspecting-names.R | 12 taxify-0.6.0/taxify/inst/doc/inspecting-names.Rmd | 549 - taxify-0.6.0/taxify/inst/doc/inspecting-names.html | 310 taxify-0.6.0/taxify/inst/doc/large-scale.R | 87 taxify-0.6.0/taxify/inst/doc/large-scale.Rmd | 876 - taxify-0.6.0/taxify/inst/doc/large-scale.html | 1003 +- taxify-0.6.0/taxify/inst/doc/migration.R | 4 taxify-0.6.0/taxify/inst/doc/migration.Rmd | 486 - taxify-0.6.0/taxify/inst/doc/migration.html | 636 - taxify-0.6.0/taxify/inst/doc/quickstart.R | 176 taxify-0.6.0/taxify/inst/doc/quickstart.Rmd | 369 taxify-0.6.0/taxify/inst/doc/quickstart.html | 481 - taxify-0.6.0/taxify/inst/doc/regions.R | 31 taxify-0.6.0/taxify/inst/doc/regions.Rmd | 283 taxify-0.6.0/taxify/inst/doc/regions.html | 372 taxify-0.6.0/taxify/inst/exampledb/enrichment/animaltraits/latest/meta.json | 2 taxify-0.6.0/taxify/inst/exampledb/enrichment/euromed_distribution |only taxify-0.6.0/taxify/inst/exampledb/enrichment/glonaf/latest/glonaf.vtr |binary taxify-0.6.0/taxify/inst/exampledb/enrichment/glonaf/latest/meta.json | 53 taxify-0.6.0/taxify/inst/exampledb/enrichment/wcvp/latest/meta.json | 42 taxify-0.6.0/taxify/inst/exampledb/enrichment/wcvp/latest/wcvp.vtr |binary taxify-0.6.0/taxify/inst/manifest.json | 639 - taxify-0.6.0/taxify/man/add_animaltraits.Rd | 4 taxify-0.6.0/taxify/man/add_common_names.Rd | 6 taxify-0.6.0/taxify/man/add_diaz_traits.Rd | 10 taxify-0.6.0/taxify/man/add_euromed_distribution.Rd |only taxify-0.6.0/taxify/man/add_glonaf.Rd | 17 taxify-0.6.0/taxify/man/add_wcvp.Rd | 17 taxify-0.6.0/taxify/man/candidate_order.Rd | 7 taxify-0.6.0/taxify/man/enrichment_authorship_col.Rd |only taxify-0.6.0/taxify/man/euromed_areas.Rd |only taxify-0.6.0/taxify/man/gbif_backmatch.Rd |only taxify-0.6.0/taxify/man/gbif_fetch.Rd |only taxify-0.6.0/taxify/man/gbif_request.Rd |only taxify-0.6.0/taxify/man/inspect.Rd | 4 taxify-0.6.0/taxify/man/list_backbones.Rd | 5 taxify-0.6.0/taxify/man/reconcile.Rd | 11 taxify-0.6.0/taxify/man/score_candidates.Rd | 21 taxify-0.6.0/taxify/man/sub-.taxify_result.Rd | 2 taxify-0.6.0/taxify/man/taxify.Rd | 47 taxify-0.6.0/taxify/man/taxify_ids.Rd |only taxify-0.6.0/taxify/tests/e2e/README.md | 2 taxify-0.6.0/taxify/tests/e2e/test-asaas-validation.R | 434 taxify-0.6.0/taxify/tests/testthat/setup.R | 65 taxify-0.6.0/taxify/tests/testthat/test-abbrev.R | 17 taxify-0.6.0/taxify/tests/testthat/test-add-euromed-distribution.R |only taxify-0.6.0/taxify/tests/testthat/test-author-citations.R |only taxify-0.6.0/taxify/tests/testthat/test-basionym.R | 21 taxify-0.6.0/taxify/tests/testthat/test-browse.R | 369 taxify-0.6.0/taxify/tests/testthat/test-cache-scope.R |only taxify-0.6.0/taxify/tests/testthat/test-cite.R | 482 - taxify-0.6.0/taxify/tests/testthat/test-cross-backbone-recovery.R | 16 taxify-0.6.0/taxify/tests/testthat/test-cross-backbone-within.R |only taxify-0.6.0/taxify/tests/testthat/test-enrich-by-group-authorship.R | 120 taxify-0.6.0/taxify/tests/testthat/test-enrich-group-prefer.R |only taxify-0.6.0/taxify/tests/testthat/test-enrichment-side-paths.R | 4 taxify-0.6.0/taxify/tests/testthat/test-exports-direct.R | 6 taxify-0.6.0/taxify/tests/testthat/test-extensions.R | 391 taxify-0.6.0/taxify/tests/testthat/test-fungalroot.R | 165 taxify-0.6.0/taxify/tests/testthat/test-fuzzy-boundary.R | 19 taxify-0.6.0/taxify/tests/testthat/test-gap-verbs.R | 23 taxify-0.6.0/taxify/tests/testthat/test-gbif-request.R |only taxify-0.6.0/taxify/tests/testthat/test-inspect.R | 32 taxify-0.6.0/taxify/tests/testthat/test-match.R | 30 taxify-0.6.0/taxify/tests/testthat/test-multiple-ids.R |only taxify-0.6.0/taxify/tests/testthat/test-region.R | 7 taxify-0.6.0/taxify/tests/testthat/test-register.R | 34 taxify-0.6.0/taxify/tests/testthat/test-source-date.R | 23 taxify-0.6.0/taxify/tests/testthat/test-untested-verbs.R | 32 taxify-0.6.0/taxify/vignettes/backbones.Rmd | 1112 +- taxify-0.6.0/taxify/vignettes/custom-data.Rmd | 876 - taxify-0.6.0/taxify/vignettes/enrichments.Rmd | 1459 +-- taxify-0.6.0/taxify/vignettes/fuzzy-matching.Rmd | 1118 +- taxify-0.6.0/taxify/vignettes/gbif-requests.Rmd |only taxify-0.6.0/taxify/vignettes/hybrids-and-aggregates.Rmd | 882 - taxify-0.6.0/taxify/vignettes/inspecting-names.Rmd | 549 - taxify-0.6.0/taxify/vignettes/large-scale.Rmd | 876 - taxify-0.6.0/taxify/vignettes/migration.Rmd | 486 - taxify-0.6.0/taxify/vignettes/quickstart.Rmd | 369 taxify-0.6.0/taxify/vignettes/regions.Rmd | 283 127 files changed, 19413 insertions(+), 17366 deletions(-)
Title: Study Indicators Based on Dutch Higher Education Data (1CHO)
Description: Calculates enrolment, graduation, dropout, and programme-switch
indicators from the Dutch higher education registration data (1CHO)
supplied by DUO. Includes an interactive 'Shiny' dashboard for exploring
results.
Author: Aslam Tanjung [aut, cre],
Veerle van Son [aut],
Damiette Bakx-van den Brink [aut]
Maintainer: Aslam Tanjung <aslam.tanjung@surf.nl>
Diff between staat1cho versions 0.1.0 dated 2026-05-18 and 0.2.0 dated 2026-09-30
DESCRIPTION | 10 MD5 | 83 +- NAMESPACE | 34 NEWS.md |only R/bekostiging.R |only R/combineer.R | 167 +++- R/dashboard.R | 49 - R/definities.R |only R/instroom.R | 203 ++-- R/pseudonimisering.R |only R/rapportage.R |only R/rendement.R | 302 ++++--- R/staat1cho-package.R | 40 R/studiewissel.R | 593 +++++++------- R/synthetisch.R |only R/uitval.R | 254 +++--- R/utils.R |only R/vakhawv.R |only inst/app/app.R | 1342 ++++++++++++++++++++++++++++----- inst/doc/staat1cho.R | 86 -- inst/doc/staat1cho.Rmd | 159 ++- inst/doc/staat1cho.html | 356 ++++++-- inst/extdata/voorbeeld_1cho.csv | 14 inst/extdata/voorbeeld_vakhawv.csv |only inst/extdata/voorbeeld_vlpbek.csv |only man/BEKOSTIGINGSTATUS_CODES.Rd |only man/DEFINITIES.Rd |only man/bereken_rendement.Rd | 87 +- man/bereken_studiewissel.Rd | 132 +-- man/bereken_uitval.Rd | 112 +- man/combineer_indicatoren.Rd | 191 ++-- man/is_gepseudonimiseerd.Rd |only man/lees_bekostiging.Rd |only man/lees_vakhawv.Rd |only man/maak_basisbestand.Rd | 52 - man/maak_benchmarkrapport.Rd |only man/maak_diploma_behaald.Rd | 71 - man/maak_instroom_cohort.Rd | 80 + man/maak_synthetische_1cho.Rd |only man/schrijf_benchmarkrapport.Rd |only man/start_dashboard.Rd | 40 man/verrijk_met_bekostiging.Rd |only man/verrijk_met_vakhawv.Rd |only tests/testthat/test-bekostiging.R |only tests/testthat/test-combineer.R | 534 +++++++------ tests/testthat/test-definities.R |only tests/testthat/test-e2e.R |only tests/testthat/test-instroom.R | 335 ++++---- tests/testthat/test-pseudonimisering.R |only tests/testthat/test-rapportage.R |only tests/testthat/test-rendement.R | 603 ++++++++------ tests/testthat/test-studiewissel.R | 533 +++++++------ tests/testthat/test-uitval.R | 531 +++++++------ tests/testthat/test-vakhawv.R |only tests/testthat/test-vooropleiding.R |only vignettes/staat1cho.Rmd | 159 ++- 56 files changed, 4464 insertions(+), 2688 deletions(-)
Title: Standardized Economic Reporting and Automated Dynamic Writing /
Synthèse d'Écrits Avec des Règles Automatisées et Dynamiques
Description: Provides tools for generating dynamic and standardized
economic narratives in R Markdown documents. The package is primarily
designed for French-language statistical and economic publications.
It includes functions to describe changes in levels, percentages,
trends, accelerations and short-term economic developments using
consistent linguistic rules. The package supports automated reporting
workflows and reproducible economic writing.
Fournit des outils permettant de générer des textes économiques
dynamiques et standardisés dans des documents R Markdown. Le package
est principalement conçu pour les publications statistiques et
économiques en français. Il propose des fonctions permettant de
décrire les évolutions de niveaux, de pourcentages, de tendances,
d'accélérations et les évolutions conjoncturelles à l'aide de règles
linguistiques homogènes. Le package facilite l'automatisation de la
rédaction et la reproductibilité des publications économiques.
Author: Alexandre Cazenave-Lacroutz [aut] ,
Jules Lejas [cre],
Direction de l'animation de la recherche, des etudes et des
statistiques [cph]
Maintainer: Jules Lejas <jules.lejas@gmail.com>
Diff between serad versions 0.2.4 dated 2026-09-03 and 0.2.5 dated 2026-09-30
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Title: Quantile Autoregressive Distributed Lag Unit Root Test
Description: Implements the Quantile Autoregressive Distributed Lag (QADF)
unit root test proposed by Koenker and Xiao (2004)
<doi:10.1198/016214504000001114>. The test examines unit root behaviour
across the conditional distribution of a time series using quantile
regression, providing a richer characterisation of persistence than
standard ADF tests. Critical values follow Hansen (1995)
<doi:10.1017/S0266466600009993>. Lag order selection is supported via
AIC, BIC, or the t-statistic sequential testing approach.
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between qadf versions 1.0.0 dated 2026-03-20 and 1.0.2 dated 2026-09-30
DESCRIPTION | 8 MD5 | 16 - NAMESPACE | 13 - NEWS.md | 13 + R/qadf.R | 415 ++++++++++++++++++--------------------------- README.md | 2 build/partial.rdb |binary man/qadf.Rd | 34 ++- tests/testthat/test-qadf.R | 22 ++ 9 files changed, 241 insertions(+), 282 deletions(-)
Title: Parallel Bayesian Optimization of Hyperparameters
Description: Fast, flexible framework for implementing Bayesian optimization of model
hyperparameters according to the methods described in Snoek et al. (2012)
<doi:10.48550/arXiv.1206.2944>.
The package allows the user to run scoring function in parallel, save intermediary
results, and tweak other aspects of the process to fully utilize the computing resources
available to the user.
Author: Novica Nakov [cre],
Samuel Wilson [aut]
Maintainer: Novica Nakov <nnovica@gmail.com>
This is a re-admission after prior archival of version 1.2.6 dated 2022-10-18
Diff between ParBayesianOptimization versions 1.2.6 dated 2022-10-18 and 1.3.0 dated 2026-09-30
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More information about ParBayesianOptimization at CRAN
Permanent link
Title: Tools and Statistical Procedures in Plant Science
Description: The 'inti' package is part of the 'inkaverse' project for developing
different procedures and tools used in plant science and experimental designs.
The mean aim of the package is to support researchers during the planning of
experiments and data collection (tarpuy()), data analysis and graphics (yupana())
, and scientific writing.
Learn more about the 'inkaverse' project at <https://inkaverse.com/>.
Author: Flavio Lozano-Isla [aut, cre] ,
Yoel Diaz-Saucedo [aut] ,
Victor-Hugo Baldera-Chaponan [aut] ,
Maria Belen Kistner [ctb] ,
QuipoLab [ctb],
Inkaverse [cph]
Maintainer: Flavio Lozano-Isla <flozanoisla@gmail.com>
Diff between inti versions 0.7.4 dated 2026-09-06 and 0.7.5 dated 2026-09-30
inti-0.7.4/inti/inst/extdata/_extensions/scihub/files/render2rticle.qmd |only inti-0.7.4/inti/inst/extdata/_extensions/scihub/files/render2rticle_V1.qmd |only inti-0.7.4/inti/inst/extdata/_extensions/scihub/index.qmd |only inti-0.7.4/inti/inst/extdata/_extensions/scihub/labels.qmd |only inti-0.7.4/inti/inst/extdata/_extensions/scihub/manuscript/Figure-1.jpg |only inti-0.7.5/inti/DESCRIPTION | 6 inti-0.7.5/inti/MD5 | 88 - inti-0.7.5/inti/NAMESPACE | 10 inti-0.7.5/inti/NEWS.md | 7 inti-0.7.5/inti/R/H2cal.R | 645 +++++-- inti-0.7.5/inti/inst/doc/DoE-1_DCA.R | 24 inti-0.7.5/inti/inst/doc/DoE-1_DCA.html | 258 ++- inti-0.7.5/inti/inst/doc/DoE-1_DCA.qmd | 24 inti-0.7.5/inti/inst/doc/DoE-1_RCBD.R | 30 inti-0.7.5/inti/inst/doc/DoE-1_RCBD.html | 157 + inti-0.7.5/inti/inst/doc/DoE-1_RCBD.qmd | 30 inti-0.7.5/inti/inst/doc/DoE-2_AUG.R | 23 inti-0.7.5/inti/inst/doc/DoE-2_AUG.html | 822 ++++++++-- inti-0.7.5/inti/inst/doc/DoE-2_AUG.qmd | 25 inti-0.7.5/inti/inst/doc/DoE-2_DCA.R | 28 inti-0.7.5/inti/inst/doc/DoE-2_DCA.html | 289 ++- inti-0.7.5/inti/inst/doc/DoE-2_DCA.qmd | 30 inti-0.7.5/inti/inst/doc/DoE-2_RCBD.R | 63 inti-0.7.5/inti/inst/doc/DoE-2_RCBD.html | 476 ++++- inti-0.7.5/inti/inst/doc/DoE-2_RCBD.qmd | 65 inti-0.7.5/inti/inst/doc/DoE-2_SPLIT.R | 26 inti-0.7.5/inti/inst/doc/DoE-2_SPLIT.html | 379 +++- inti-0.7.5/inti/inst/doc/DoE-2_SPLIT.qmd | 28 inti-0.7.5/inti/inst/doc/DoE-3_DCA.R | 24 inti-0.7.5/inti/inst/doc/DoE-3_DCA.html | 461 ++++- inti-0.7.5/inti/inst/doc/DoE-3_DCA.qmd | 24 inti-0.7.5/inti/inst/doc/DoE-3_RCBD.R | 26 inti-0.7.5/inti/inst/doc/DoE-3_RCBD.html | 411 ++++- inti-0.7.5/inti/inst/doc/DoE-3_RCBD.qmd | 26 inti-0.7.5/inti/inst/doc/apps.html | 2 inti-0.7.5/inti/inst/extdata/_extensions/scihub/ReadMe.qmd |only inti-0.7.5/inti/inst/extdata/_extensions/scihub/analysis.qmd | 117 + inti-0.7.5/inti/inst/extdata/_extensions/scihub/article.qmd | 33 inti-0.7.5/inti/inst/extdata/_extensions/scihub/files/labels.qmd |only inti-0.7.5/inti/inst/extdata/_extensions/scihub/manuscript/cover-letter.pdf |only inti-0.7.5/inti/man/H2cal.Rd | 49 inti-0.7.5/inti/vignettes/DoE-1_DCA.qmd | 24 inti-0.7.5/inti/vignettes/DoE-1_RCBD.qmd | 30 inti-0.7.5/inti/vignettes/DoE-2_AUG.qmd | 25 inti-0.7.5/inti/vignettes/DoE-2_DCA.qmd | 30 inti-0.7.5/inti/vignettes/DoE-2_RCBD.qmd | 65 inti-0.7.5/inti/vignettes/DoE-2_SPLIT.qmd | 28 inti-0.7.5/inti/vignettes/DoE-3_DCA.qmd | 24 inti-0.7.5/inti/vignettes/DoE-3_RCBD.qmd | 26 49 files changed, 3616 insertions(+), 1342 deletions(-)
Title: Reproducible and Flexible Label Design
Description: An open-source R package to deploys reproducible and flexible labels using layers.
The 'huito' package is part of the 'inkaverse' project for developing different procedures and
tools used in plant science and experimental designs.
Learn more about the 'inkaverse' project at <https://inkaverse.com/>.
Author: Flavio Lozano-Isla [aut, cre] ,
Victor-Hugo Baldera-Chaponan [aut] ,
Inkaverse [cph]
Maintainer: Flavio Lozano-Isla <flozanoisla@gmail.com>
Diff between huito versions 0.2.7 dated 2026-08-21 and 0.2.8 dated 2026-09-30
DESCRIPTION | 10 ++--- MD5 | 34 ++++++++++++------ NEWS.md | 4 ++ build/vignette.rds |binary inst/doc/GerminaR.R | 2 - inst/doc/GerminaR.html | 2 - inst/doc/GerminaR.qmd | 2 - inst/doc/horizontal.R | 3 + inst/doc/horizontal.html | 61 +++++++++++++++++----------------- inst/doc/horizontal.qmd | 3 + inst/doc/tocapu.R |only inst/doc/tocapu.html |only inst/doc/tocapu.qmd |only inst/doc/vertical.html | 8 ++-- vignettes/GerminaR.qmd | 2 - vignettes/horizontal.qmd | 3 + vignettes/tocapu-1.png |only vignettes/tocapu.qmd |only vignettes/tocapu_design_logo.jpeg |only vignettes/tocapu_design_qr.jpeg |only vignettes/tocapu_download_a4.jpeg |only vignettes/tocapu_download_hexbin.jpeg |only vignettes/tocapu_intro.jpeg |only 23 files changed, 76 insertions(+), 58 deletions(-)
Title: Generalized Covariate Field
Description: Generates generalized covariate field (GCF) variables from
spatial covariates observed at projected coordinates, and selects a
stable subset of them for geospatial prediction. For each input
covariate the method builds spatial-pattern features (local indicator
of spatial association, local Geary's c, log local variance, rank
quantile entropy, geocomplexity, log scale variance, local variogram
exponent, and signed z-score and median absolute deviation outlier
strengths over a series of buffer radii) and neighbourhood-distribution
features (buffer-wise quantiles of the covariate values surrounding
each location), reduces the buffer and quantile sweeps to a compact set
of interpretable functional summaries, and selects variables by random
forest importance combined with spatial-block stability resampling and
group voting. The GCF method is positioned as prediction-oriented
feature construction: its output feeds any downstream regression
learner. Methods are described in Song (2026)
<do [...truncated...]
Author: Yongze Song [aut, cre, cph]
Maintainer: Yongze Song <yongze.song@outlook.com>
Diff between gcf versions 0.1.0 dated 2026-09-26 and 0.1.1 dated 2026-09-30
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS.md | 16 ++++++++++++++++ R/psi.R | 10 ++++++++-- tests/testthat/test-features.R | 16 ++++++++++++++++ 5 files changed, 48 insertions(+), 10 deletions(-)
Title: Fourier ARDL Methods: Quantile, Nonlinear, Multi-Threshold &
Unit Root Tests
Description: Comprehensive implementation of advanced ARDL methodologies for
cointegration analysis with structural breaks and asymmetric effects.
Includes: (1) Fourier Quantile ARDL (FQARDL) - quantile regression with
Fourier approximation for analyzing relationships across the conditional
distribution; (2) Fourier Nonlinear ARDL (FNARDL) - asymmetric cointegration
with partial sum decomposition following Shin, Yu & Greenwood-Nimmo (2014)
<doi:10.1007/978-1-4899-8008-3_9>; (3) Multi-Threshold NARDL (MTNARDL) -
multiple regime asymmetry analysis; (4) Fourier Unit Root Tests - ADF and
KPSS tests with Fourier terms following Enders & Lee (2012)
<doi:10.1016/j.econlet.2012.04.081> and Becker, Enders & Lee (2006)
<doi:10.1111/j.1467-9892.2006.00478.x>. Features automatic lag and frequency
selection, PSS bounds testing following Pesaran, Shin & Smith (2001)
<doi:10.1002/jae.616>, bootstrap cointegration tests, Wald tests for
asymmetry, dynamic multiplier computati [...truncated...]
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between fqardl versions 1.0.5 dated 2026-09-28 and 1.0.6 dated 2026-09-30
fqardl-1.0.5/fqardl/man/fadf_pvalue.Rd |only fqardl-1.0.6/fqardl/DESCRIPTION | 6 fqardl-1.0.6/fqardl/MD5 | 16 - fqardl-1.0.6/fqardl/NEWS.md | 8 fqardl-1.0.6/fqardl/R/fourier.R | 112 +---------- fqardl-1.0.6/fqardl/R/funitroot.R | 162 ++++++++--------- fqardl-1.0.6/fqardl/man/fadf_f_test.Rd | 3 fqardl-1.0.6/fqardl/man/fourier_adf.Rd | 3 fqardl-1.0.6/fqardl/man/get_fkpss_critical_values.Rd | 2 fqardl-1.0.6/fqardl/tests/testthat/test-funitroot-cv.R |only 10 files changed, 113 insertions(+), 199 deletions(-)
Title: Fourier Bootstrap ARDL Cointegration Test
Description: Implements the Fourier Bootstrap Autoregressive Distributed Lag
(FBARDL) bounds testing approach for cointegration analysis. Combines the
Pesaran, Shin & Smith (2001) <doi:10.1002/jae.616> ARDL bounds testing
framework with Fourier terms to capture structural breaks following
Yilanci, Bozoklu & Gorus (2020) <doi:10.1016/j.scs.2020.102035>,
and bootstrap critical values based on McNown, Sam & Goh (2018)
<doi:10.1080/00036846.2017.1366643> and Bertelli, Vacca & Zoia (2022)
<doi:10.1016/j.econmod.2022.105987>, with finite-sample bounds test critical
values from Kripfganz and Schneider (2020) <doi:10.1111/obes.12377>. Features include automatic lag
selection via AIC/BIC, optimal Fourier frequency selection by minimum
SSR, long-run and short-run coefficient estimation, diagnostic tests,
and dynamic multiplier analysis.
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between fbardl versions 1.0.2 dated 2026-03-12 and 1.1.0 dated 2026-09-30
DESCRIPTION | 20 - MD5 | 20 + NEWS.md |only R/fbardl.R | 135 +++++++--- R/helpers.R | 644 +++++++++++++++++++++----------------------------- R/ks_bounds.R |only R/sysdata.rda |only README.md | 2 build/partial.rdb |binary inst/CITATION |only man/fbardl-package.Rd | 6 man/fbardl.Rd | 35 ++ tests |only 13 files changed, 424 insertions(+), 438 deletions(-)
Title: Factor Analysis for All
Description: Provides a comprehensive Shiny-based graphical user interface
for conducting a wide range of factor analysis procedures. 'FAfA'
(Factor Analysis for All) guides users through data uploading,
assumption checking (descriptives, collinearity, multivariate
normality, outliers), data wrangling (variable exclusion, data
splitting), factor retention analysis (e.g., Parallel Analysis, Hull
method, EGA), Exploratory Factor Analysis (EFA) with various rotation
and extraction methods, internal split-sample EFA replication analysis,
Confirmatory Factor Analysis (CFA) for model
testing, Reliability Analysis (e.g., Cronbach's Alpha, McDonald's
Omega), Measurement Invariance testing across groups, and item
weighting techniques. The application leverages established R packages
such as 'lavaan' and 'psych' to perform these analyses, offering an
accessible platform for researchers and students. Results are
presented in user-friendly tables and plots, with options for
downloading outputs. Analysis projec [...truncated...]
Author: Abdullah Faruk KILIC [aut, cre, cph],
Ahmet Caliskan [aut, cph],
Melissa G. Wolf [ctb, cph] ,
Daniel McNeish [ctb, cph] ,
Brian P. O'Connor [ctb, cph]
Maintainer: Abdullah Faruk KILIC <afarukkilic@trakya.edu.tr>
This is a re-admission after prior archival of version 1.2 dated 2026-08-02
Diff between FAfA versions 1.2 dated 2026-08-02 and 1.4 dated 2026-09-30
FAfA-1.2/FAfA/tests/testthat/testthat-problems.rds |only FAfA-1.4/FAfA/DESCRIPTION | 30 ++-- FAfA-1.4/FAfA/MD5 | 46 +++--- FAfA-1.4/FAfA/NAMESPACE | 69 ++++----- FAfA-1.4/FAfA/NEWS.md | 10 + FAfA-1.4/FAfA/R/app_server.R | 6 FAfA-1.4/FAfA/R/app_ui.R | 1 FAfA-1.4/FAfA/R/efa_replication_utils.R |only FAfA-1.4/FAfA/R/mod_about_server.r | 8 - FAfA-1.4/FAfA/R/mod_about_ui.r | 2 FAfA-1.4/FAfA/R/mod_efa_replication_server.R |only FAfA-1.4/FAfA/R/mod_efa_replication_ui.R |only FAfA-1.4/FAfA/R/mod_efa_ui.r | 3 FAfA-1.4/FAfA/R/mod_ega_server.r | 1 FAfA-1.4/FAfA/R/mod_missing_server.r | 2 FAfA-1.4/FAfA/R/mod_project_server.R | 24 +++ FAfA-1.4/FAfA/R/project_utils.R | 33 ++++ FAfA-1.4/FAfA/R/utils.r | 132 ++++++++++++++++--- FAfA-1.4/FAfA/README.md | 13 + FAfA-1.4/FAfA/inst/COPYRIGHTS | 22 +++ FAfA-1.4/FAfA/inst/WORDLIST | 64 ++++----- FAfA-1.4/FAfA/inst/app/www/fafa-project.js | 23 +++ FAfA-1.4/FAfA/man/efa_replication_analysis.Rd |only FAfA-1.4/FAfA/man/efa_replication_server.Rd |only FAfA-1.4/FAfA/tests/testthat/test-about.R | 3 FAfA-1.4/FAfA/tests/testthat/test-efa-replication.R |only FAfA-1.4/FAfA/tests/testthat/test-project-reports.R | 15 ++ FAfA-1.4/FAfA/tests/testthat/test-removed-efatools.R |only 28 files changed, 373 insertions(+), 134 deletions(-)
Title: Methods to Enrich R Objects with Extra Components
Description: Provides the "enrich()" method for augmenting list-like R objects with additional, model-specific components. Methods are currently available for objects of class "family", "link-glm", "lm", "glm", and "betareg". Enriched objects retain their original class and remain compatible with existing methods. For example, enriching a "glm" object produces an "enriched_glm" object that also inherits from "glm". In addition to the standard components, the "enriched_glm" object includes methods for simulation and functions to compute scores, observed and expected information matrices, first-order bias, and other model quantities such as densities, probabilities, and quantiles, which can be evaluated at use-supplied parameter values. The package also provides tools for generating customizable source code templates for the structured implementation of methods to compute new components and enrich arbitrary objects.
Author: Ioannis Kosmidis [aut, cre]
Maintainer: Ioannis Kosmidis <ioannis.kosmidis@warwick.ac.uk>
Diff between enrichwith versions 0.5.0 dated 2026-04-29 and 0.6 dated 2026-09-30
enrichwith-0.5.0/enrichwith/inst/dev_resids.R |only enrichwith-0.6/enrichwith/DESCRIPTION | 10 enrichwith-0.6/enrichwith/MD5 | 68 - enrichwith-0.6/enrichwith/NAMESPACE | 32 enrichwith-0.6/enrichwith/NEWS.md | 43 - enrichwith-0.6/enrichwith/R/create_enrichwith_skeleton.R | 3 enrichwith-0.6/enrichwith/R/enrich.betareg.R | 340 ++++++-- enrichwith-0.6/enrichwith/R/enrich.family.R | 23 enrichwith-0.6/enrichwith/R/enrich.glm.R | 410 +++------- enrichwith-0.6/enrichwith/R/enrich.link-glm.R | 3 enrichwith-0.6/enrichwith/R/enrich.lm.R | 37 enrichwith-0.6/enrichwith/R/enriched_glm.R | 15 enrichwith-0.6/enrichwith/build/partial.rdb |binary enrichwith-0.6/enrichwith/build/vignette.rds |binary enrichwith-0.6/enrichwith/inst/doc/GLMs.R | 31 enrichwith-0.6/enrichwith/inst/doc/GLMs.Rmd | 47 - enrichwith-0.6/enrichwith/inst/doc/GLMs.html | 117 -- enrichwith-0.6/enrichwith/inst/doc/bias.Rmd | 2 enrichwith-0.6/enrichwith/inst/doc/exponential_family.Rmd | 2 enrichwith-0.6/enrichwith/inst/doc/exponential_family.html | 16 enrichwith-0.6/enrichwith/man/enrich.betareg.Rd | 12 enrichwith-0.6/enrichwith/man/enrich.glm.Rd | 10 enrichwith-0.6/enrichwith/man/enriched_glm.Rd | 14 enrichwith-0.6/enrichwith/man/enrichwith.Rd | 5 enrichwith-0.6/enrichwith/man/get_dmodel_function.betareg.Rd |only enrichwith-0.6/enrichwith/man/get_dmodel_function.glm.Rd | 8 enrichwith-0.6/enrichwith/man/get_information_function.betareg.Rd | 4 enrichwith-0.6/enrichwith/man/get_information_function.glm.Rd | 5 enrichwith-0.6/enrichwith/man/get_pmodel_function.betareg.Rd |only enrichwith-0.6/enrichwith/man/get_pmodel_function.glm.Rd | 9 enrichwith-0.6/enrichwith/man/get_qmodel_function.betareg.Rd |only enrichwith-0.6/enrichwith/man/get_qmodel_function.glm.Rd | 8 enrichwith-0.6/enrichwith/man/get_score_function.betareg.Rd | 4 enrichwith-0.6/enrichwith/man/get_score_function.glm.Rd | 5 enrichwith-0.6/enrichwith/vignettes/GLMs.Rmd | 47 - enrichwith-0.6/enrichwith/vignettes/bias.Rmd | 2 enrichwith-0.6/enrichwith/vignettes/exponential_family.Rmd | 2 37 files changed, 703 insertions(+), 631 deletions(-)
Title: Extracting and Visualizing Bayesian Graphical Models
Description: Fit and visualize the results of a Bayesian analysis of networks commonly found in psychology.
The package supports cross-sectional network models for ordinal, binary, continuous, and mixed data,
fitted using the packages 'bgms' (default), 'BDgraph', and 'BGGM',
as well as network comparison tests fitted using the packages 'bgms' and 'BGGM'.
The package provides the parameter estimates, posterior inclusion probabilities, inclusion Bayes factor, and the
posterior density of the parameters. In addition, for 'BDgraph' and 'bgms' it allows to assess the posterior
structure space. Furthermore, the package comes with an extensive suite for visualizing results.
Author: Karoline Huth [aut, cre] ,
Sara Keetelaar [ctb],
Nikola Sekulovski [ctb],
Gali Geller [ctb]
Maintainer: Karoline Huth <k.huth@uva.nl>
Diff between easybgm versions 0.5.0 dated 2026-09-10 and 0.5.1 dated 2026-09-30
DESCRIPTION | 6 MD5 | 32 ++-- NEWS.md | 64 ++++++++ R/AuxiliaryFunctions.R | 40 ++++- R/easybgm.R | 2 R/easybgm_compare.R | 39 +++-- R/functions.bgms.R | 58 ++++++- R/functions.bgmscompare.R | 65 +++++--- R/plottingfunctions.bgmCompare.R | 180 +++++++++++++---------- R/plottingfunctions.bgms.R | 176 ++++++++++++---------- R/plottingfunctions.easybgm.R | 205 +++++++++++++++----------- R/summary.easybgm.R | 14 + R/summary.easybgm_compare.R | 32 +++- man/easybgm.Rd | 2 man/easybgm_compare.Rd | 19 ++ tests/testthat/Rplots.pdf |binary tests/testthat/test-easybgm.R | 304 ++++++++++++++++++++++++++++++--------- 17 files changed, 861 insertions(+), 377 deletions(-)
Title: Tidy Interface for Reproducible Web Crawling
Description: A tidy, pipe-friendly toolkit for reproducible web crawling
and structured data collection, inspired by the architecture of the
'Crawlee' library. Provides a unified crawler with a deduplicating,
resumable request queue, content-type aware handlers, structured
storage backends and rich console logging via 'cli'. Supports crawling
HTML pages, sitemaps, RSS and Atom feeds and PDF documents, with optional
headless-browser rendering and helpers for retrieval-augmented generation.
Author: Andre Leite [aut, cre],
Marcos Wasiliew [aut] ,
Hugo Vasconcelos [aut],
Carlos Amorim [aut],
Diogo Bezerra [aut],
Julia Nascimento Barreto [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between crawlee versions 0.1.0 dated 2026-07-03 and 0.1.1 dated 2026-09-30
DESCRIPTION | 27 ++++++++++++++++----------- MD5 | 9 +++++---- NEWS.md | 7 +++++++ inst/WORDLIST | 3 +++ man/crawlee-package.Rd | 5 +++-- man/figures/crawlee-rpkg.svg |only 6 files changed, 34 insertions(+), 17 deletions(-)
Title: Optimal Pairing and Matching via Linear Assignment
Description: Solves optimal pairing and matching problems using linear assignment
algorithms. Provides implementations of the Hungarian method (Kuhn 1955)
<doi:10.1002/nav.3800020109>, Jonker-Volgenant shortest path algorithm
(Jonker and Volgenant 1987) <doi:10.1007/BF02278710>, Auction algorithm
(Bertsekas 1988) <doi:10.1007/BF02186476>, cost-scaling
(Goldberg and Kennedy 1995) <doi:10.1007/BF01585996>, scaling algorithms
(Gabow and Tarjan 1989) <doi:10.1137/0218069>, push-relabel (Goldberg and
Tarjan 1988) <doi:10.1145/48014.61051>, and Sinkhorn entropy-regularized
transport (Cuturi 2013) <doi:10.48550/arxiv.1306.0895>. Designed for
matching plots, sites, samples, or any pairwise optimization problem.
Supports rectangular matrices, forbidden assignments, data frame inputs,
batch solving, k-best solutions, and pixel-level image morphing for
visualization. Includes automatic preprocessing with variable health
checks, multiple scaling methods (standardized, [...truncated...]
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between couplr versions 1.7.1 dated 2026-09-16 and 1.8.0 dated 2026-09-30
couplr-1.7.1/couplr/src/solvers/solve_hungarian_rcpp.cpp |only couplr-1.7.1/couplr/src/solvers/solve_jv_lazy_rcpp.cpp |only couplr-1.7.1/couplr/src/solvers/solve_jv_rcpp.cpp |only couplr-1.8.0/couplr/DESCRIPTION | 8 couplr-1.8.0/couplr/LICENSE | 4 couplr-1.8.0/couplr/MD5 | 301 - couplr-1.8.0/couplr/NEWS.md | 148 couplr-1.8.0/couplr/R/RcppExports.R | 614 +-- couplr-1.8.0/couplr/R/couplr-package.R | 78 couplr-1.8.0/couplr/R/data.R | 606 +-- couplr-1.8.0/couplr/R/flow_model.R | 71 couplr-1.8.0/couplr/R/lap_certify.R | 101 couplr-1.8.0/couplr/R/lap_dispatch.R | 4 couplr-1.8.0/couplr/R/lap_implicit.R | 14 couplr-1.8.0/couplr/R/lap_solve.R | 101 couplr-1.8.0/couplr/R/matching_cardinality.R | 34 couplr-1.8.0/couplr/R/matching_cardinality_exact.R | 468 +- couplr-1.8.0/couplr/R/matching_core.R | 140 couplr-1.8.0/couplr/R/matching_distance_cache.R | 5 couplr-1.8.0/couplr/R/matching_full.R | 6 couplr-1.8.0/couplr/R/matching_memory.R | 17 couplr-1.8.0/couplr/R/matching_parallel.R | 4 couplr-1.8.0/couplr/R/matching_plots.R | 466 +- couplr-1.8.0/couplr/R/matching_preprocessing.R | 1024 +++--- couplr-1.8.0/couplr/R/matching_propensity.R | 304 - couplr-1.8.0/couplr/R/morph_pixel.R | 1678 +++++----- couplr-1.8.0/couplr/R/trace_aliases.R | 5 couplr-1.8.0/couplr/README.md | 31 couplr-1.8.0/couplr/inst/CITATION | 16 couplr-1.8.0/couplr/inst/NOTICE | 4 couplr-1.8.0/couplr/inst/WORDLIST | 234 - couplr-1.8.0/couplr/inst/doc/algorithms.R | 108 couplr-1.8.0/couplr/inst/doc/algorithms.Rmd | 149 couplr-1.8.0/couplr/inst/doc/algorithms.html | 106 couplr-1.8.0/couplr/inst/doc/comparison.html | 4 couplr-1.8.0/couplr/inst/doc/getting-started.html | 4 couplr-1.8.0/couplr/inst/doc/matching-workflows.html | 16 couplr-1.8.0/couplr/inst/doc/pixel-morphing.html | 4 couplr-1.8.0/couplr/inst/doc/troubleshooting.html | 4 couplr-1.8.0/couplr/inst/extdata/solver-benchmark.csv |only couplr-1.8.0/couplr/inst/scripts/generate_examples.R | 748 ++-- couplr-1.8.0/couplr/inst/scripts/speed_comparison.R | 332 - couplr-1.8.0/couplr/man/assignment.Rd | 32 couplr-1.8.0/couplr/man/cardinality_match.Rd | 23 couplr-1.8.0/couplr/man/dot-cardinality_branch_bound.Rd | 5 couplr-1.8.0/couplr/man/dot-cardinality_flow.Rd | 37 couplr-1.8.0/couplr/man/dot-cardinality_lagrangian.Rd | 25 couplr-1.8.0/couplr/man/dot-cardinality_report.Rd | 7 couplr-1.8.0/couplr/man/dot-cardinality_solve.Rd | 5 couplr-1.8.0/couplr/man/dot-couples_replace.Rd | 10 couplr-1.8.0/couplr/man/estimate_dense_matrix_mb.Rd | 8 couplr-1.8.0/couplr/man/estimate_dense_solve_mb.Rd | 9 couplr-1.8.0/couplr/man/match_couples.Rd | 15 couplr-1.8.0/couplr/man/verify_assignment.Rd | 51 couplr-1.8.0/couplr/man/verify_flow.Rd | 52 couplr-1.8.0/couplr/src/Makevars | 6 couplr-1.8.0/couplr/src/Makevars.win | 6 couplr-1.8.0/couplr/src/RcppExports.cpp | 175 - couplr-1.8.0/couplr/src/core/lap_certify.h | 115 couplr-1.8.0/couplr/src/core/lap_certify_rcpp.cpp | 247 + couplr-1.8.0/couplr/src/core/lap_exact.h | 257 + couplr-1.8.0/couplr/src/core/lap_exact_potentials.h |only couplr-1.8.0/couplr/src/core/lap_internal.h | 7 couplr-1.8.0/couplr/src/core/lap_rcpp_convert.h | 10 couplr-1.8.0/couplr/src/flow/flow_certify.h | 314 + couplr-1.8.0/couplr/src/flow/flow_implicit.h | 208 + couplr-1.8.0/couplr/src/flow/flow_implicit_rcpp.cpp | 36 couplr-1.8.0/couplr/src/flow/flow_lagrangian.h |only couplr-1.8.0/couplr/src/flow/flow_pricing.h | 17 couplr-1.8.0/couplr/src/flow/flow_rcpp.cpp | 168 - couplr-1.8.0/couplr/src/flow/flow_row_search.h | 12 couplr-1.8.0/couplr/src/flow/flow_tree_pricing.h | 34 couplr-1.8.0/couplr/src/rcpp_interface.cpp | 126 couplr-1.8.0/couplr/src/solvers/solve_hungarian.cpp | 44 couplr-1.8.0/couplr/src/solvers/solve_jv_duals.cpp | 5 couplr-1.8.0/couplr/src/solvers/solve_jv_duals.h | 7 couplr-1.8.0/couplr/src/solvers/solve_jv_duals_impl.h | 5 couplr-1.8.0/couplr/src/solvers/solve_jv_duals_rcpp.cpp | 22 couplr-1.8.0/couplr/tests/testthat.R | 24 couplr-1.8.0/couplr/tests/testthat/README.md | 256 - couplr-1.8.0/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleA.R | 258 - couplr-1.8.0/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleB.R | 316 - couplr-1.8.0/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleC.R | 318 - couplr-1.8.0/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleD.R | 344 +- couplr-1.8.0/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleE.R | 656 +-- couplr-1.8.0/couplr/tests/testthat/gabow-tarjan/test_gabow_tarjan_moduleF.R | 652 +-- couplr-1.8.0/couplr/tests/testthat/helper-gabow_tarjan.R | 114 couplr-1.8.0/couplr/tests/testthat/test-additional-coverage.R | 850 ++--- couplr-1.8.0/couplr/tests/testthat/test-assign.R | 614 +-- couplr-1.8.0/couplr/tests/testthat/test-assignment-auction-gs.R | 370 +- couplr-1.8.0/couplr/tests/testthat/test-assignment-auto.R | 86 couplr-1.8.0/couplr/tests/testthat/test-assignment-bottleneck.R | 724 ++-- couplr-1.8.0/couplr/tests/testthat/test-assignment-csa.R | 488 +- couplr-1.8.0/couplr/tests/testthat/test-assignment-csflow.R | 128 couplr-1.8.0/couplr/tests/testthat/test-assignment-hk01.R | 56 couplr-1.8.0/couplr/tests/testthat/test-assignment-hungarian.R | 76 couplr-1.8.0/couplr/tests/testthat/test-assignment-jv.R | 188 - couplr-1.8.0/couplr/tests/testthat/test-assignment-network-simplex.R | 206 - couplr-1.8.0/couplr/tests/testthat/test-assignment-push_relabel.R | 692 ++-- couplr-1.8.0/couplr/tests/testthat/test-assignment-ramshaw_tarjan.R | 636 +-- couplr-1.8.0/couplr/tests/testthat/test-assignment.R | 52 couplr-1.8.0/couplr/tests/testthat/test-auction-hang.R | 114 couplr-1.8.0/couplr/tests/testthat/test-batch-coverage-final.R | 202 - couplr-1.8.0/couplr/tests/testthat/test-batch-kbest-extended.R | 356 +- couplr-1.8.0/couplr/tests/testthat/test-batch-processing.R | 410 +- couplr-1.8.0/couplr/tests/testthat/test-blocks-coverage.R | 510 +-- couplr-1.8.0/couplr/tests/testthat/test-cardinality-exact.R | 101 couplr-1.8.0/couplr/tests/testthat/test-certificate.R | 9 couplr-1.8.0/couplr/tests/testthat/test-certify-exact.R | 97 couplr-1.8.0/couplr/tests/testthat/test-constraints-coverage.R | 398 +- couplr-1.8.0/couplr/tests/testthat/test-cpp-interface.R | 867 ++--- couplr-1.8.0/couplr/tests/testthat/test-cycle-cancel-coverage-2.R | 288 - couplr-1.8.0/couplr/tests/testthat/test-cycle-cancel-coverage.R | 272 - couplr-1.8.0/couplr/tests/testthat/test-cycle-cancel.R | 260 - couplr-1.8.0/couplr/tests/testthat/test-distance-cache-coverage.R | 2 couplr-1.8.0/couplr/tests/testthat/test-exact-arithmetic.R |only couplr-1.8.0/couplr/tests/testthat/test-external-reference.R |only couplr-1.8.0/couplr/tests/testthat/test-gabow_tarjan_complexity.R | 416 +- couplr-1.8.0/couplr/tests/testthat/test-kbest-coverage-final.R | 132 couplr-1.8.0/couplr/tests/testthat/test-kbest-lawler.R | 258 - couplr-1.8.0/couplr/tests/testthat/test-kbest-murty.R | 78 couplr-1.8.0/couplr/tests/testthat/test-lap-solve-batch-coverage-2.R | 386 +- couplr-1.8.0/couplr/tests/testthat/test-lap-solve-batch-coverage-3.R | 434 +- couplr-1.8.0/couplr/tests/testthat/test-lap-solve-batch-coverage.R | 778 ++-- couplr-1.8.0/couplr/tests/testthat/test-lap-solve-batch-extended.R | 480 +- couplr-1.8.0/couplr/tests/testthat/test-line-metric.R | 514 +-- couplr-1.8.0/couplr/tests/testthat/test-matching-cem.R | 322 - couplr-1.8.0/couplr/tests/testthat/test-matching-diagnostics-extended.R | 768 ++-- couplr-1.8.0/couplr/tests/testthat/test-matching-full.R | 326 - couplr-1.8.0/couplr/tests/testthat/test-matching-interop.R | 316 - couplr-1.8.0/couplr/tests/testthat/test-matching-join-coverage.R | 626 +-- couplr-1.8.0/couplr/tests/testthat/test-matching-messages.R | 772 ++-- couplr-1.8.0/couplr/tests/testthat/test-matching-output.R | 166 couplr-1.8.0/couplr/tests/testthat/test-matching-parallel.R | 552 +-- couplr-1.8.0/couplr/tests/testthat/test-matching-preprocessing-coverage-2.R | 830 ++-- couplr-1.8.0/couplr/tests/testthat/test-matching-preprocessing-coverage.R | 640 +-- couplr-1.8.0/couplr/tests/testthat/test-matching-subclass.R | 344 +- couplr-1.8.0/couplr/tests/testthat/test-matching-utils-coverage.R | 704 ++-- couplr-1.8.0/couplr/tests/testthat/test-matching-utils-extended.R | 798 ++-- couplr-1.8.0/couplr/tests/testthat/test-messages-coverage.R | 322 - couplr-1.8.0/couplr/tests/testthat/test-messages-extended.R | 456 +- couplr-1.8.0/couplr/tests/testthat/test-morph-pixel-cpp-coverage.R | 778 ++-- couplr-1.8.0/couplr/tests/testthat/test-morph-tiling.R | 434 +- couplr-1.8.0/couplr/tests/testthat/test-network-simplex-coverage.R | 268 - couplr-1.8.0/couplr/tests/testthat/test-parallel-join-coverage.R | 9 couplr-1.8.0/couplr/tests/testthat/test-potentials.R |only couplr-1.8.0/couplr/tests/testthat/test-prepare-cost-matrix.R | 34 couplr-1.8.0/couplr/tests/testthat/test-preprocessing-coverage.R | 452 +- couplr-1.8.0/couplr/tests/testthat/test-print-methods.R | 570 +-- couplr-1.8.0/couplr/tests/testthat/test-sensitivity.R | 248 - couplr-1.8.0/couplr/tests/testthat/test-sinkhorn.R | 418 +- couplr-1.8.0/couplr/tests/testthat/test-solver-csa.R | 600 +-- couplr-1.8.0/couplr/tests/testthat/test-utility-functions.R | 652 +-- couplr-1.8.0/couplr/tests/testthat/test-utils-extended-2.R | 396 +- couplr-1.8.0/couplr/tests/testthat/test-zzz-onload.R | 74 couplr-1.8.0/couplr/vignettes/algorithms.Rmd | 149 156 files changed, 20330 insertions(+), 18221 deletions(-)
Title: Visualization Tools for Sensitivity Analysis of Unmeasured
Confounding
Description: Visualization and reporting tools for sensitivity analysis to
unmeasured confounding in observational studies. A common
'confoundsens' object stores a sensitivity path (the treatment effect
as a function of hypothetical confounder strength) regardless of the
framework that produced it, so the same robustness curves, contour
plots, covariate benchmark ("sensitivity Love") plots, and plain-language
reports can be drawn for impact threshold analysis (Frank, 2000,
<doi:10.1177/0049124100029002001>), partial R-squared omitted-variable
bias analysis (Cinelli and Hazlett, 2020, <doi:10.1111/rssb.12348>),
and E-values (VanderWeele and Ding, 2017, <doi:10.7326/M16-2607>).
Paths can be computed directly from fitted linear models or converted
from results produced by the 'sensemakr', 'konfound', and 'EValue'
packages.
Author: Subir Hait [aut, cre]
Maintainer: Subir Hait <haitsubi@msu.edu>
Diff between confoundvis versions 0.1.0 dated 2026-03-30 and 0.2.0 dated 2026-09-30
confoundvis-0.1.0/confoundvis/R/plot_figure2_taylor_panels.R |only confoundvis-0.1.0/confoundvis/man/figures |only confoundvis-0.1.0/confoundvis/man/plot_figure2_taylor_panels.Rd |only confoundvis-0.2.0/confoundvis/DESCRIPTION | 44 - confoundvis-0.2.0/confoundvis/MD5 | 90 +- confoundvis-0.2.0/confoundvis/NAMESPACE | 14 confoundvis-0.2.0/confoundvis/NEWS.md | 66 + confoundvis-0.2.0/confoundvis/R/adapters.R |only confoundvis-0.2.0/confoundvis/R/as_confoundsens.R | 51 + confoundvis-0.2.0/confoundvis/R/new_confoundsens.R | 12 confoundvis-0.2.0/confoundvis/R/plot_reversal_cone.R | 15 confoundvis-0.2.0/confoundvis/R/plot_robustness_curve.R | 32 confoundvis-0.2.0/confoundvis/R/plot_sensitivity_love.R | 30 confoundvis-0.2.0/confoundvis/R/plot_taylor_panels.R |only confoundvis-0.2.0/confoundvis/R/print_confoundsens.R | 5 confoundvis-0.2.0/confoundvis/R/report.R |only confoundvis-0.2.0/confoundvis/R/sens_lm.R |only confoundvis-0.2.0/confoundvis/R/validate_confoundsens.R | 14 confoundvis-0.2.0/confoundvis/R/zzz-globals.R | 2 confoundvis-0.2.0/confoundvis/R/zzz.R | 36 confoundvis-0.2.0/confoundvis/README.md | 375 ++-------- confoundvis-0.2.0/confoundvis/build/partial.rdb |only confoundvis-0.2.0/confoundvis/build/vignette.rds |binary confoundvis-0.2.0/confoundvis/inst/doc/confoundvis-intro.Rmd | 25 confoundvis-0.2.0/confoundvis/inst/doc/confoundvis-intro.html | 38 - confoundvis-0.2.0/confoundvis/inst/doc/confoundvis-workflow.R |only confoundvis-0.2.0/confoundvis/inst/doc/confoundvis-workflow.Rmd |only confoundvis-0.2.0/confoundvis/inst/doc/confoundvis-workflow.html |only confoundvis-0.2.0/confoundvis/man/as.data.frame.confoundsens.Rd | 6 confoundvis-0.2.0/confoundvis/man/as_confoundsens.Rd | 46 - confoundvis-0.2.0/confoundvis/man/confoundvis-package.Rd | 41 - confoundvis-0.2.0/confoundvis/man/covariate_impacts.Rd |only confoundvis-0.2.0/confoundvis/man/fit_local_quadratic.Rd | 28 confoundvis-0.2.0/confoundvis/man/from_evalue.Rd |only confoundvis-0.2.0/confoundvis/man/from_konfound.Rd |only confoundvis-0.2.0/confoundvis/man/from_sensemakr.Rd |only confoundvis-0.2.0/confoundvis/man/itcv_lm.Rd |only confoundvis-0.2.0/confoundvis/man/new_confoundsens.Rd | 31 confoundvis-0.2.0/confoundvis/man/plot_cone_comparison.Rd | 8 confoundvis-0.2.0/confoundvis/man/plot_local_taylor.Rd | 20 confoundvis-0.2.0/confoundvis/man/plot_reversal_cone.Rd | 22 confoundvis-0.2.0/confoundvis/man/plot_robustness_curve.Rd | 30 confoundvis-0.2.0/confoundvis/man/plot_sensitivity_contour.Rd | 10 confoundvis-0.2.0/confoundvis/man/plot_sensitivity_love.Rd | 33 confoundvis-0.2.0/confoundvis/man/plot_taylor_panels.Rd |only confoundvis-0.2.0/confoundvis/man/print.confoundsens.Rd | 6 confoundvis-0.2.0/confoundvis/man/robustness_points.Rd |only confoundvis-0.2.0/confoundvis/man/sens_path_lm.Rd |only confoundvis-0.2.0/confoundvis/man/sens_report.Rd |only confoundvis-0.2.0/confoundvis/man/simulate_taylor_demo.Rd | 10 confoundvis-0.2.0/confoundvis/man/summary.confoundsens.Rd | 6 confoundvis-0.2.0/confoundvis/man/validate_confoundsens.Rd | 6 confoundvis-0.2.0/confoundvis/tests/testthat.R |only confoundvis-0.2.0/confoundvis/tests/testthat/test-adapters.R |only confoundvis-0.2.0/confoundvis/tests/testthat/test-geometry_plots.R |only confoundvis-0.2.0/confoundvis/tests/testthat/test-report.R |only confoundvis-0.2.0/confoundvis/tests/testthat/test-sens_lm.R |only confoundvis-0.2.0/confoundvis/vignettes/confoundvis-intro.Rmd | 25 confoundvis-0.2.0/confoundvis/vignettes/confoundvis-workflow.Rmd |only 59 files changed, 657 insertions(+), 520 deletions(-)
Title: Multiple Granger Causality Tests for Time Series and Panel Data
Description: Comprehensive suite of Granger causality tests for time series
and panel data. For time series: Toda-Yamamoto (1995)
<doi:10.1016/0304-4076(94)01616-8>, Fourier-based tests with single
frequency (Enders and Jones, 2016) <doi:10.1515/snde-2014-0101> and
cumulative frequencies (Nazlioglu et al., 2019)
<doi:10.1080/1540496X.2018.1434072>, quantile causality tests (Cai et al.,
2023) <doi:10.1016/j.frl.2023.104327>, and Bootstrap Fourier Granger
Causality in Quantiles (Cheng et al., 2021)
<doi:10.1007/s12076-020-00263-0>. For panel data: Panel Fourier
Toda-Yamamoto (Yilanci and Gorus, 2020)
<doi:10.1007/s11356-020-10092-9> and Panel Quantile Causality tests
(Wang and Nguyen, 2022) <doi:10.1080/1331677X.2021.1948436>, as well as
Group-Mean and Pooled Fully Modified OLS estimators for panel
cointegrating polynomial regressions (Wagner and Reichold, 2023)
<doi:10.1080/07474938.2023.2178141>. All tests include bootstrap
inference for robust p-valu [...truncated...]
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between caustests versions 1.1.1 dated 2026-04-05 and 1.1.4 dated 2026-09-30
DESCRIPTION | 8 - MD5 | 26 ++-- NEWS.md | 19 ++ R/caustests-package.R | 4 R/caustests.R | 30 ++-- R/xtpcaus.R | 2 R/xtpcmg.R | 102 ++++++++++++--- README.md | 126 +++++++++---------- build/partial.rdb |binary inst |only man/caustests-package.Rd | 239 ++++++++++++++++++------------------- man/xtpcaus.Rd | 2 man/xtpcmg.Rd | 1 tests/testthat.R | 2 tests/testthat/test-xtpcmg-stata.R |only 15 files changed, 322 insertions(+), 239 deletions(-)
Title: Comprehensive ARDL: Panel, Bootstrap and Fourier Methods
Description: A unified framework for Autoregressive Distributed Lag (ARDL) modeling
and cointegration analysis. Implements Panel ARDL with Pooled Mean Group (PMG),
Mean Group (MG), and Dynamic Fixed Effects (DFE) estimators following
Pesaran, Shin and Smith (1999) <doi:10.1080/01621459.1999.10474156>.
Provides bootstrap-based bounds testing per Pesaran, Shin & Smith (2001)
<doi:10.1002/jae.616>. Includes Quantile Nonlinear ARDL (QNARDL) combining
distributional and asymmetric effects based on Shin, Yu & Greenwood-Nimmo (2014)
<doi:10.1007/978-1-4899-8008-3_9>, and Fourier ARDL for modeling smooth
structural breaks following Enders & Lee (2012) <doi:10.1016/j.econlet.2012.04.081>.
Features include Augmented ARDL (AARDL) with deferred t and F tests,
Multiple-Threshold NARDL for complex asymmetries, Rolling/Recursive ARDL
for time-varying relationships, and Panel NARDL for nonlinear panel cointegration.
All methods include comprehensive diagnostics, publication-read [...truncated...]
Author: Muhammad Abdullah Alkhalaf [aut, cre] ,
Yeleazar Levchenko [ctb] )
Maintainer: Muhammad Abdullah Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between ardlverse versions 2.0.2 dated 2026-09-28 and 2.0.3 dated 2026-09-30
DESCRIPTION | 6 - MD5 | 38 +++++---- NEWS.md | 12 ++ R/augmented_ardl.R | 75 +++++++++--------- R/bootstrap_ardl.R | 158 ++++++++++++++++++--------------------- R/diagnostics.R | 22 +++-- R/fourier_ardl.R | 87 +++++++++++---------- R/ks_bounds.R |only R/mtnardl.R | 28 ++++-- R/panel_nardl.R | 52 +++++++++--- R/qnardl.R | 51 +++++++----- R/rolling_ardl.R | 30 +++++-- R/sysdata.rda |only build |only man/dot-aardl_bootstrap.Rd | 2 man/dot-aardl_critical_values.Rd | 7 + man/dot-mtnardl_bootstrap.Rd | 2 man/dot-pss_pvalues.Rd |only man/fourier_bounds_test.Rd | 49 +++++------- man/pss_critical_values.Rd | 76 +++++++++--------- tests/testthat/Rplots.pdf |only tests/testthat/test-ks-bounds.R |only tests/testthat/test-panel_ardl.R | 2 23 files changed, 385 insertions(+), 312 deletions(-)
Title: Sampling Error Estimation for Complex Surveys
Description: Estimates sampling errors and produces indicator tables for
complex survey data. Supports weighted totals, proportions, standard
errors, confidence intervals (Wald or logit-transformed for
proportions), coefficients of variation, design effects,
unweighted frequencies, grouped estimates, domain estimates, optional
stratification and clustering variables, and customizable exports to
'.xlsx' files. Survey estimation is based on design-based inference using
Taylor series linearization implemented in the 'survey' package (Lumley,
2004, <doi:10.18637/jss.v009.i08>; Lumley, 2010,
ISBN:9780470284308). The package provides a reproducible workflow for
official statistics, household surveys, and applied survey research.
Author: Luis Burgos [aut, cre]
Maintainer: Luis Burgos <lburgoss1996@gmail.com>
Diff between svySE versions 0.2.1 dated 2026-07-31 and 0.3.0 dated 2026-09-30
DESCRIPTION | 9 MD5 | 74 - NAMESPACE | 36 NEWS.md | 32 R/calculo.R | 77 + R/columnas.R | 732 +++++----- R/config.R | 94 + R/exportar.R | 2046 ++++++++++++++--------------- R/simple.R | 1288 +++++++++--------- README.md | 1784 +++++++++++++------------ build/vignette.rds |binary inst/CITATION | 4 inst/doc/svySE-basic-workflow.R | 82 + inst/doc/svySE-basic-workflow.Rmd | 1572 ++++++++++++---------- inst/doc/svySE-basic-workflow.html | 1091 +++++++++------ man/figures/workflow.png |only man/print.svySE_cfg.Rd | 40 man/print.svySE_result.Rd | 44 man/print.svySE_simple_result.Rd | 38 man/svySE_calc.Rd | 122 - man/svySE_cfg.Rd | 68 man/svySE_chk_bool.Rd | 42 man/svySE_chk_cols.Rd | 46 man/svySE_cols_err.Rd | 54 man/svySE_cols_err_all.Rd | 32 man/svySE_cols_tab.Rd | 72 - man/svySE_cols_tab_all.Rd | 30 man/svySE_is_cfg.Rd | 38 man/svySE_simple.Rd | 148 +- man/svySE_xlsx.Rd | 174 +- tests/testthat/test-calculo-ci.R |only tests/testthat/test-calculo-diseno.R | 522 +++---- tests/testthat/test-calculo-division.R | 528 +++---- tests/testthat/test-calculo-validaciones.R | 962 ++++++------- tests/testthat/test-columnas.R | 396 ++--- tests/testthat/test-config.R | 388 ++--- tests/testthat/test-exportar.R | 536 +++---- tests/testthat/test-simple.R | 788 +++++------ vignettes/svySE-basic-workflow.Rmd | 1572 ++++++++++++---------- 39 files changed, 8324 insertions(+), 7237 deletions(-)
Title: Fit Difference-in-Differences Models with Staggered
Interventions
Description: Fits linear difference-in-differences models in scenarios where
intervention roll-outs are staggered over time. The package implements a
version of an approach proposed by Sun and Abraham (2021)
<doi:10.1016/j.jeconom.2020.09.006> to estimate cohort- and
time-since-treatment specific difference-in-differences parameters, and it
provides convenience functions both for specifying the model and for
flexibly aggregating coefficients to answer a variety of research questions.
Author: Kyle Hart [aut, cre, cph] ,
Stephan Lindner [aut]
Maintainer: Kyle Hart <hartky@ohsu.edu>
Diff between staggR versions 0.2.1 dated 2026-09-22 and 0.2.2 dated 2026-09-30
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 5 +++++ R/prep_data.R | 2 -- R/sdid.R | 5 +++++ R/select_terms.R | 17 +++++++++++------ inst/doc/staggR.html | 2 +- 7 files changed, 31 insertions(+), 18 deletions(-)
Title: Read and Write MAT Files and Call MATLAB from Within R
Description: Methods readMat() and writeMat() for reading and writing MAT files. For users with MATLAB v6 or newer installed (either locally or on a remote host), the package also provides methods for controlling MATLAB (trademark) via R and sending and retrieving data between R and MATLAB.
Author: Henrik Bengtsson [aut, cre, cph] ,
Andy Jacobson [ctb] ,
Jason Riedy [ctb]
Maintainer: Henrik Bengtsson <henrikb@braju.com>
Diff between R.matlab versions 3.8.0 dated 2026-09-09 and 3.8.1 dated 2026-09-30
DESCRIPTION | 6 +++--- MD5 | 9 +++++---- NEWS.md | 7 +++++++ R/readMat.R | 2 ++ inst/mat-files/emptyString_issue59-v5.mat |only man/R.matlab-package.Rd | 2 +- 6 files changed, 18 insertions(+), 8 deletions(-)
Title: Phylogenetic Tree Models and the Power of Tree Shape Statistics
Description: The first goal of this package is to provide a multitude of tree models,
i.e., functions that generate rooted binary trees with a given number of leaves.
Second, the package allows for an easy evaluation and comparison of tree shape
statistics by estimating their power to differentiate between different tree models.
Please note that this R package was developed alongside the manuscript
'Tree balance in phylogenetic models' by
S. J. Kersting, K. Wicke, and M. Fischer (2025) <doi:10.1098/rstb.2023.0303>,
which provides further background and the respective mathematical definitions.
This project was supported by the project ArtIGROW, which is a part of the
WIR!-Alliance ArtIFARM – Artificial Intelligence in Farming funded by the
German Federal Ministry of Education and Research (No. 03WIR4805).
Author: Sophie Kersting [aut, cre] ,
Kristina Wicke [aut] ,
Mareike Fischer [aut]
Maintainer: Sophie Kersting <sophie.kersting@uni-greifswald.de>
Diff between poweRbal versions 0.1.0 dated 2026-04-15 and 0.1.1 dated 2026-09-30
DESCRIPTION | 6 +++--- MD5 | 11 ++++++----- NEWS.md |only R/powerData.R | 4 ++++ R/powerRegAcc.R | 24 ++++++++++++------------ R/tmAll.R | 10 ++++++---- man/generateTrees.Rd | 4 ++-- 7 files changed, 33 insertions(+), 26 deletions(-)
Title: Fast and Efficient Access to MODIS Earth Observation Data
Description: Programmatic interface to several NASA Earth Observation 'OPeNDAP' servers (Open-source Project for a Network Data Access Protocol) (<https://www.opendap.org/>). Allows for easy downloads of MODIS subsets, as well as other Earth Observation datacubes, in a time-saving and efficient way : by sampling it at the very downloading phase (spatially, temporally and dimensionally).
Author: Paul Taconet [aut, cre, cph] ,
Nicolas Moiroux [fnd] ,
French National Research Institute for Sustainable Development, IRD
[fnd]
Maintainer: Paul Taconet <paul.taconet@gmail.com>
Diff between modisfast versions 1.0.2 dated 2025-07-17 and 2.0.0 dated 2026-09-30
modisfast-1.0.2/modisfast/R/mf_get_opt_param.R |only modisfast-1.0.2/modisfast/R/mf_login.R |only modisfast-1.0.2/modisfast/man/mf_get_opt_param.Rd |only modisfast-1.0.2/modisfast/man/mf_login.Rd |only modisfast-1.0.2/modisfast/tests/testthat/test-mf_login.R |only modisfast-2.0.0/modisfast/DESCRIPTION | 21 modisfast-2.0.0/modisfast/MD5 | 70 modisfast-2.0.0/modisfast/NAMESPACE | 33 modisfast-2.0.0/modisfast/NEWS.md | 41 modisfast-2.0.0/modisfast/R/buildUrls.R | 257 - modisfast-2.0.0/modisfast/R/functions_import_data.R | 64 modisfast-2.0.0/modisfast/R/gpm_parameters.R |only modisfast-2.0.0/modisfast/R/import_modis_cloud.R |only modisfast-2.0.0/modisfast/R/internal_gpm_metadata.R |only modisfast-2.0.0/modisfast/R/internal_gpm_variables.R |only modisfast-2.0.0/modisfast/R/internal_opendap.R | 12 modisfast-2.0.0/modisfast/R/internal_tests.R | 110 modisfast-2.0.0/modisfast/R/mf_download_data.R | 77 modisfast-2.0.0/modisfast/R/mf_get_url.R | 441 +- modisfast-2.0.0/modisfast/R/mf_get_url_gpm.R |only modisfast-2.0.0/modisfast/R/mf_import_data.R | 44 modisfast-2.0.0/modisfast/R/mf_list_collections_cloud.R |only modisfast-2.0.0/modisfast/R/mf_list_variables.R | 164 modisfast-2.0.0/modisfast/R/mf_modisfast.R | 23 modisfast-2.0.0/modisfast/R/sysdata.rda |binary modisfast-2.0.0/modisfast/README.md | 1889 ++++++++-- modisfast-2.0.0/modisfast/data/entomological_data.rda |binary modisfast-2.0.0/modisfast/inst/extdata |only modisfast-2.0.0/modisfast/man/mf_download_data.Rd | 20 modisfast-2.0.0/modisfast/man/mf_get_url.Rd | 105 modisfast-2.0.0/modisfast/man/mf_import_data.Rd | 22 modisfast-2.0.0/modisfast/man/mf_list_collections_cloud.Rd |only modisfast-2.0.0/modisfast/man/mf_list_variables.Rd | 37 modisfast-2.0.0/modisfast/man/mf_modisfast.Rd | 36 modisfast-2.0.0/modisfast/man/modisfast-package.Rd | 5 modisfast-2.0.0/modisfast/tests/testthat/helper-modisfast.R | 17 modisfast-2.0.0/modisfast/tests/testthat/test-import_modis_cloud.R |only modisfast-2.0.0/modisfast/tests/testthat/test-mf_download_data.R | 37 modisfast-2.0.0/modisfast/tests/testthat/test-mf_get_url.R | 201 - modisfast-2.0.0/modisfast/tests/testthat/test-mf_get_url_cloud.R |only modisfast-2.0.0/modisfast/tests/testthat/test-mf_import_data.R | 86 modisfast-2.0.0/modisfast/tests/testthat/test-mf_list_collections.R | 13 modisfast-2.0.0/modisfast/tests/testthat/test-mf_list_variables.R | 88 43 files changed, 2568 insertions(+), 1345 deletions(-)
Title: Fast, Simple API Tools for Retrieving Data from 'DeltaBreed'
Description: Simplified data retrieval from the 'DeltaBreed' breeding
data management platform (<https://sandbox.breedinginsight.net/>) via the
'BrAPI' open-source breeding data API (<https://brapi.org/specification>).
Each of the four main data types stored in 'DeltaBreed' (germplasm, trait variables,
experiments/environments, and observations) are handled by a get_datatype()
function that constructs and executes the request, handles paginated responses,
and parses the retrieved data. Responses are reformatted into a consistent,
R-friendly data frame format that resembles how the data appears on the
'DeltaBreed' web interface as closely as possible.
Author: Tyr Wiesner-Hanks [aut, cre]
Maintainer: Tyr Wiesner-Hanks <twiesnerhanks@ufl.edu>
Diff between deltabreedquery versions 1.0.3 dated 2026-08-25 and 1.0.4 dated 2026-09-30
DESCRIPTION | 6 - MD5 | 27 +++--- R/authentication.R | 2 R/experiments.R | 9 +- R/observations.R | 134 +++++++++++++++++++++++++--------- R/variables.R | 6 - README.md | 3 man/figures/logo_deltabreedquery.png |only man/filter_observations.Rd | 18 +++- man/get_experiments.Rd | 9 +- man/get_observations.Rd | 18 +++- man/get_variables.Rd | 5 - man/login_deltabreed.Rd | 2 tests/testthat/test-empty_endpoints.R | 5 - tests/testthat/test-get_functions.R | 2 15 files changed, 162 insertions(+), 84 deletions(-)
More information about deltabreedquery at CRAN
Permanent link
Title: Conditional Inference Procedures in a Permutation Test Framework
Description: Conditional inference procedures for the general independence
problem including two-sample, K-sample (non-parametric ANOVA),
correlation, censored, ordered and multivariate problems described
in <doi:10.18637/jss.v028.i08>.
Author: Torsten Hothorn [aut, cre] ,
Henric Winell [aut] ,
Kurt Hornik [aut] ,
Mark A. van de Wiel [aut] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between coin versions 1.4-5 dated 2026-07-10 and 1.4-6 dated 2026-09-30
DESCRIPTION | 6 ++-- MD5 | 44 ++++++++++++++++---------------- R/InitMethods.R | 37 +++++++++++++++++++++----- R/SymmetryTests.R | 16 +++++++---- build/partial.rdb |binary build/vignette.rds |binary cleanup | 8 +++++ inst/NEWS.Rd | 10 ++++++- inst/doc/Implementation.pdf |binary inst/doc/LegoCondInf.pdf |binary inst/doc/MAXtest.pdf |binary inst/doc/coin.pdf |binary man/ContingencyTests.Rd | 3 ++ man/CorrelationTests.Rd | 4 ++ man/IndependenceTest.Rd | 1 man/LocationTests.Rd | 6 ++++ man/MarginalHomogeneityTests.Rd | 1 man/MaximallySelectedStatisticsTests.Rd | 1 man/ScaleTests.Rd | 6 ++++ man/SurvivalTests.Rd | 2 + man/SymmetryTest.Rd | 1 man/SymmetryTests.Rd | 4 ++ tests/bugfixes.Rout.save | 16 ++++------- 23 files changed, 116 insertions(+), 50 deletions(-)
Title: Extracts Risk Neutral Densities of Prices, Money Market Rates
and Government Bond Yields from Interest Rates Futures Options
Prices
Description: Provides with parametric Risk Neutral Densities (RNDs) and cumulative densities of futures prices on fixed-income products. It relies on options on Short Term Interest Rate futures or options on government bond futures. It models the futures price at options' maturity as a mixture of lognormal densities. Leveraging on this, the package provides with the RNDs and cumulative densities of the money market rate or the government bond yield inferred from the futures price, using the RND of the futures price. The package also extracts from options prices on bond futures in one go the RND of the cheapest-to-deliver (ctd) bond repo rate from options' to futures' maturity and the RND of the ctd bond yield at options' maturity. The package also provides with the probability attached to each bond in the delivery basket of a government bond futures to be the cheapest at options' maturity from an examination of either the implied repo rate or the net basis of bonds in the delivery basket. At last, [...truncated...]
Author: William Arrata [aut, cre]
Maintainer: William Arrata <william.arrata@gmail.com>
Diff between yrnd versions 0.1.6 dated 2026-08-28 and 0.1.7 dated 2026-09-30
DESCRIPTION | 8 MD5 | 56 NAMESPACE | 2 R/bond_fut_irr_ytm.R | 225 R/bond_future_charac_bbg.R | 1 R/bond_future_price.R | 7 R/bond_yield_spread.R | 7 R/ctd_bond_yield.R | 7 R/deliv_bonds_charac_bbg.R | 14 R/globals.R | 3 R/option_prices_bbg.R | 6 R/proba_ctd.R | 15 R/proba_ctd_irr.R |only R/proba_ctd_opt.R | 76 R/stir_future_price.R | 7 R/stir_rate.R | 7 inst/doc/yrnd-functions.R | 213 inst/doc/yrnd-functions.Rmd | 243 inst/doc/yrnd-functions.html |10829 +----------------------------------------- man/bond_fut_irr_ytm.Rd | 28 man/bond_future_price.Rd | 2 man/bond_yield_spread.Rd | 2 man/ctd_bond_yield.Rd | 2 man/deliv_bonds_charac_bbg.Rd | 2 man/proba_ctd.Rd | 6 man/proba_ctd_irr.Rd |only man/proba_ctd_opt.Rd | 6 man/stir_future_price.Rd | 2 man/stir_rate.Rd | 2 vignettes/yrnd-functions.Rmd | 243 30 files changed, 687 insertions(+), 11334 deletions(-)
Title: Spatial Concentration and Radius-Based Risk Calculations
Description: Provides computational building blocks for fixed-radius spatial
aggregation, weighted circle-placement problems, hotspot detection, and
polygon-based spatial summaries. The package focuses on efficient
determination of the sum of observations within a given radius, identifying
areas of high local concentration, and aggregating point data to polygon
geometries. These methods are useful for applications such as insurance,
urban analytics, environmental exposure analysis, and other spatial point
pattern workflows. The fixed-radius circle placement problem is discussed
by Chazelle and Lee (1986) <doi:10.1007/BF02238188>, and
related maximum covering problems are described by Church (1974)
<doi:10.1007/BF01942293>.
Author: Martin Haringa [aut, cre]
Maintainer: Martin Haringa <mtharinga@gmail.com>
Diff between spatialrisk versions 0.8.2 dated 2026-09-01 and 0.8.3 dated 2026-09-30
DESCRIPTION | 8 MD5 | 31 +- NAMESPACE | 88 ++++--- NEWS.md | 18 + R/RcppExports.R | 4 R/concentration_hotspot_pair_refine.R | 14 - R/highest_concentration_terra.R | 59 +++-- R/hotspot-workflow.R | 3 inst/doc/fixed-radius-concentration.Rmd | 12 - inst/doc/fixed-radius-concentration.html | 61 +++-- inst/doc/visualisation.html | 2 man/concentration_hotspot.Rd | 16 + man/prepare_spatialrisk.Rd | 3 src/RcppExports.cpp | 20 + src/concentration_hotspot_indexed.cpp | 224 +++++++++++++++----- tests/testthat/test-hotspot-numerical-consistency.R |only vignettes/fixed-radius-concentration.Rmd | 12 - 17 files changed, 398 insertions(+), 177 deletions(-)
Title: qPCR Data Analysis
Description: Tools for qPCR data analysis using Delta Ct and Delta Delta Ct methods, including t-test, Wilcoxon-test, ANOVA models, and publication-ready visualizations. The package supports multiple target, and multiple reference genes, and uses a calculation framework adopted from Ganger et al. (2017) <doi:10.1186/s12859-017-1949-5> and Taylor et al. (2019) <doi:10.1016/j.tibtech.2018.12.002>, covering both the Livak and Pfaffl methods.
Author: Ghader Mirzaghaderi [aut, cre, cph]
Maintainer: Ghader Mirzaghaderi <mirzaghaderi@gmail.com>
Diff between rtpcr versions 2.1.9 dated 2026-08-21 and 2.2.0 dated 2026-09-30
DESCRIPTION | 6 MD5 | 35 - NAMESPACE | 1 NEWS.md | 8 R/ANOVA_DCt.R | 2 R/ANOVA_DDCt.R | 2 R/TTEST_DDCt.R | 2 R/WILCOX_DDCt.R | 2 R/compute_wDCt.R | 84 +-- R/plotFactor.R | 333 ++++++------ R/qpcrhlpr.R | 243 ++++++++ inst/doc/manual.Rmd | 6 inst/doc/manual.html | 7 inst/extdata/data_3factorMultiTarget.csv |only inst/shinyapp/app.R | 134 ++++ inst/shinyapp/rsconnect/shinyapps.io/mirzaghaderi/rtpcr.dcf | 2 man/compute_wDCt.Rd | 27 man/plotFactor.Rd | 180 +++--- vignettes/manual.Rmd | 6 19 files changed, 746 insertions(+), 334 deletions(-)
Title: 'Rcpp' Bindings for the 'fast_float' Header-Only Library for
Number Parsing
Description: Converting ascii text into (floating-point) numeric values is a
very common problem. The 'fast_float' header-only 'C++' library by Daniel Lemire
does it very well and very fast at up to or over to 1 gigabyte per second as
described in more detail in <doi:10.1002/spe.2984>. 'fast_float' is
licensed under the Apache 2.0 license and provided here for use by other R
packages via a simple 'LinkingTo:' statement.
Author: Dirk Eddelbuettel [aut, cre] ,
Brendan Knapp [aut] ,
Daniel Lemire [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppFastFloat versions 0.0.5 dated 2025-01-15 and 0.0.6 dated 2026-09-30
.aspell |only ChangeLog | 38 + DESCRIPTION | 18 MD5 | 30 R/RcppExports.R | 2 README.md | 3 inst/NEWS.Rd | 9 inst/include/fast_float/ascii_number.h | 385 ++++++++++-- inst/include/fast_float/bigint.h | 4 inst/include/fast_float/constexpr_feature_detect.h | 9 inst/include/fast_float/decimal_to_binary.h | 7 inst/include/fast_float/digit_comparison.h | 19 inst/include/fast_float/fast_float.h | 44 + inst/include/fast_float/float_common.h | 658 +++++++++++++++++++-- inst/include/fast_float/parse_number.h | 264 ++++++-- man/as.double2.Rd | 3 src/as_double2.cpp | 2 17 files changed, 1283 insertions(+), 212 deletions(-)
Title: Tools and Classes for Statistical Models
Description: A collection of tools to deal with statistical models.
The functionality is experimental and the user interface is likely to
change in the future. The documentation is rather terse, but packages `coin'
and `party' have some working examples. However, if you find the
implemented ideas interesting we would be very interested in a discussion
of this proposal. Contributions are more than welcome!
Author: Torsten Hothorn [aut, cre] ,
Friedrich Leisch [aut] ,
Achim Zeileis [aut]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between modeltools versions 0.2-24 dated 2025-05-02 and 0.2-25 dated 2026-09-30
DESCRIPTION | 9 +++++---- MD5 | 8 ++++---- R/Generics.R | 6 ------ R/survReg.R | 11 ++++------- inst/NEWS | 8 ++++++++ 5 files changed, 21 insertions(+), 21 deletions(-)
Title: Index Construction for Time Series Data
Description: Derivation of indexes for benchmarking purposes. A methodology with flexible number of constituents is implemented. Also functions for market capitalization and volume weighted indexes with fixed number of constituents are available. The main function of the package, indexComp(), provides the derived index, suitable for analysis purposes. The functions indexUpdate(), indexMemberSelection() and indexMembersUpdate() are components of indexComp() and enable one to construct and continuously update an index, e.g. for display on a website. The methodology behind the functions provided gets introduced in Trimborn and Haerdle (2018) <doi:10.1016/j.jempfin.2018.08.004>.
Author: Simon Trimborn [aut, cre]
Maintainer: Simon Trimborn <trimborn.econometrics@gmail.com>
Diff between IndexConstruction versions 0.1-3 dated 2020-06-02 and 0.2-1 dated 2026-09-30
IndexConstruction-0.1-3/IndexConstruction/data/datalist |only IndexConstruction-0.2-1/IndexConstruction/DESCRIPTION | 17 IndexConstruction-0.2-1/IndexConstruction/MD5 | 32 - IndexConstruction-0.2-1/IndexConstruction/R/IndexComp.R | 102 +++- IndexConstruction-0.2-1/IndexConstruction/R/IndexEval.R | 2 IndexConstruction-0.2-1/IndexConstruction/R/IndexLoop.R | 22 - IndexConstruction-0.2-1/IndexConstruction/R/IndexMemberSelection.R | 6 IndexConstruction-0.2-1/IndexConstruction/build |only IndexConstruction-0.2-1/IndexConstruction/data/CryptoData.RData |binary IndexConstruction-0.2-1/IndexConstruction/man/IndexComp.Rd | 220 +++++----- IndexConstruction-0.2-1/IndexConstruction/man/IndexMemberSelection.Rd | 162 +++---- IndexConstruction-0.2-1/IndexConstruction/man/IndexMembersUpdate.Rd | 94 ++-- IndexConstruction-0.2-1/IndexConstruction/man/IndexUpdate.Rd | 78 +-- IndexConstruction-0.2-1/IndexConstruction/man/RelativeWeights.Rd | 2 IndexConstruction-0.2-1/IndexConstruction/man/SwitchDates.Rd | 70 +-- IndexConstruction-0.2-1/IndexConstruction/man/marketData.Rd | 34 - IndexConstruction-0.2-1/IndexConstruction/man/priceData.Rd | 34 - IndexConstruction-0.2-1/IndexConstruction/man/volData.Rd | 34 - 18 files changed, 498 insertions(+), 411 deletions(-)
More information about IndexConstruction at CRAN
Permanent link
Title: Icon-Based Population Charts and Plots for 'ggplot2'
Description: Create engaging population charts and point plots in R. 'ggpop' allows users to represent population data and points proportionally using customizable icons, facilitating the creation of circular representative population charts as well as any point-plots.
Author: Jorge A. Roa-Contreras [aut, cre] ,
Ralitza Soultanova [aut] ,
Fernando Alarid-Escudero [aut] ,
Carlos Pineda-Antunez [aut]
Maintainer: Jorge A. Roa-Contreras <jorgeroa@stanford.edu>
Diff between ggpop versions 1.8.0 dated 2026-08-23 and 1.9.0 dated 2026-09-30
ggpop-1.8.0/ggpop/tests/testthat/Rplots.pdf |only ggpop-1.9.0/ggpop/DESCRIPTION | 8 +- ggpop-1.9.0/ggpop/MD5 | 43 +++++++------ ggpop-1.9.0/ggpop/NAMESPACE | 5 + ggpop-1.9.0/ggpop/NEWS.md | 31 +++++++++ ggpop-1.9.0/ggpop/R/key_legend.R | 13 ++- ggpop-1.9.0/ggpop/R/legend-canvas.R | 14 ++-- ggpop-1.9.0/ggpop/R/legend-spec.R |only ggpop-1.9.0/ggpop/R/marker-encode.R |only ggpop-1.9.0/ggpop/README.md | 2 ggpop-1.9.0/ggpop/inst/CITATION | 2 ggpop-1.9.0/ggpop/inst/doc/v-geom-pop.html | 6 - ggpop-1.9.0/ggpop/inst/doc/v-ggpop.html | 2 ggpop-1.9.0/ggpop/inst/doc/v-process-data.html | 8 +- ggpop-1.9.0/ggpop/inst/doc/v-themes.html | 6 - ggpop-1.9.0/ggpop/inst/icons/circle-cross.svg | 8 +- ggpop-1.9.0/ggpop/inst/icons/circle-hollow.svg | 2 ggpop-1.9.0/ggpop/inst/icons/circle-solid.svg | 2 ggpop-1.9.0/ggpop/man/key_legend.Rd | 5 - ggpop-1.9.0/ggpop/man/legend_add_key.Rd |only ggpop-1.9.0/ggpop/man/legend_box.Rd | 7 +- ggpop-1.9.0/ggpop/man/legend_render.Rd |only ggpop-1.9.0/ggpop/man/legend_spec.Rd |only ggpop-1.9.0/ggpop/man/legend_subset.Rd |only ggpop-1.9.0/ggpop/man/marker_encode.Rd |only ggpop-1.9.0/ggpop/tests/testthat/test-18_marker-encode.R |only ggpop-1.9.0/ggpop/tests/testthat/test-19_legend-spec.R |only ggpop-1.9.0/ggpop/tests/testthat/test-20_legend-variants.R |only 28 files changed, 109 insertions(+), 55 deletions(-)
Title: Data Validation Based on 'YAML' Rules
Description: A comprehensive data validation package that allows comparing
datasets using configurable validation rules defined in 'YAML' files.
Built on top of the 'pointblank' package for robust data validation, it
supports exact matching, tolerance-based numeric comparisons, text
normalization, and row count validation.
Author: Vincent Guyader [cre, aut] ,
ThinkR [cph],
Agence technique de l'information sur l'hospitalisation [spn]
Maintainer: Vincent Guyader <vincent@thinkr.fr>
Diff between datadiff versions 0.6.0 dated 2026-07-12 and 0.6.1 dated 2026-09-30
DESCRIPTION | 6 MD5 | 118 - NAMESPACE | 66 NEWS.md | 1332 ++++++++--------- R/compare_datasets_from_yaml.R | 2035 +++++++++++++------------- R/constants.R | 82 - R/coverage.R | 373 ++-- R/data_types.R | 120 - R/datadiff-result.R | 102 - R/duplicate_keys.R | 158 +- R/fast_path.R | 182 +- R/pointblank_setup.R | 375 ++-- R/preprocessing.R | 260 +-- R/report.R | 652 ++++---- R/tolerance.R | 806 +++++----- R/utils.R | 130 - R/validation.R | 166 +- README.md | 870 +++++------ build/vignette.rds |binary inst/doc/datadiff.Rmd | 1970 ++++++++++++------------- inst/doc/datadiff.html | 2 man/compare_datasets_from_yaml.Rd | 347 ++-- man/datadiff_report_html.Rd | 66 man/detect_column_types.Rd | 58 man/preprocess_dataframe.Rd | 74 man/print.datadiff_report.Rd | 42 man/setup_pointblank_agent.Rd | 205 +- man/validate_row_counts.Rd | 82 - man/write_rules_template.Rd | 175 +- tests/testthat/helper-equivalence.R | 266 +-- tests/testthat/test-arrow-dataset-to-duckdb.R | 164 +- tests/testthat/test-avoidable-scans.R | 136 - tests/testthat/test-boolean-column-guards.R | 68 tests/testthat/test-coverage.R | 506 +++--- tests/testthat/test-default-rules.R | 528 +++--- tests/testthat/test-duplicate-keys.R | 298 +-- tests/testthat/test-edge-cases.R | 1762 +++++++++++----------- tests/testthat/test-equivalence-guard.R | 358 ++-- tests/testthat/test-extract-diagnostics.R | 198 +- tests/testthat/test-extraction-params.R | 942 ++++++------ tests/testthat/test-factor-columns.R | 198 +- tests/testthat/test-input-validation.R | 424 ++--- tests/testthat/test-internal-coverage.R | 110 - tests/testthat/test-internal-helpers.R | 94 - tests/testthat/test-key-parameter.R | 718 ++++----- tests/testthat/test-keys-empty-list.R |only tests/testthat/test-lazy-aggregates.R | 272 +-- tests/testthat/test-main.R | 254 +-- tests/testthat/test-na-equality-semantics.R | 164 +- tests/testthat/test-nan-inf-sql-equivalence.R | 294 +-- tests/testthat/test-pointblank-setup.R | 402 ++--- tests/testthat/test-report-extracts-dir.R | 144 - tests/testthat/test-report-robustness.R | 142 - tests/testthat/test-report.R | 808 +++++----- tests/testthat/test-response-field.R | 152 - tests/testthat/test-temp-tables.R | 116 - tests/testthat/test-tolerance-non-numeric.R |only tests/testthat/test-tolerance-ok.R | 208 +- tests/testthat/test-utils.R | 342 ++-- tests/testthat/test-yaml-arg-precedence.R | 312 +-- vignettes/datadiff.Rmd | 1970 ++++++++++++------------- 61 files changed, 11710 insertions(+), 11494 deletions(-)
Title: Bayesian Analyses for One- and Two-Sample Inference and
Regression Methods
Description: Perform fundamental analyses using Bayesian parametric and non-parametric inference (regression, anova, 1 and 2 sample inference, non-parametric tests, etc.). (Practically) no Markov chain Monte Carlo (MCMC) is used; all exact finite sample inference is completed via closed form solutions or else through posterior sampling automated to ensure precision in interval estimate bounds. Diagnostic plots for model assessment, and key inferential quantities (point and interval estimates, probability of direction, region of practical equivalence, and Bayes factors) and model visualizations are provided. Bayes factors are computed either by the Savage Dickey ratio given in Dickey (1971) <doi:10.1214/aoms/1177693507> or by Chib's method as given in <doi:10.1080/01621459.1995.10476635>. Interpretations are from Kass and Raftery (1995) <doi:10.1080/01621459.1995.10476572>. ROPE bounds are based on discussions in Kruschke (2018) <doi:10.1177/2515245918771304>. Methods for d [...truncated...]
Author: Daniel K. Sewell [aut, cre, cph] ,
Alan Arakkal [aut]
Maintainer: Daniel K. Sewell <daniel-sewell@uiowa.edu>
Diff between bayesics versions 3.0.2 dated 2026-08-28 and 3.1.0 dated 2026-09-30
DESCRIPTION | 6 MD5 | 136 ++++++------ NAMESPACE | 366 ++++++++++++++++---------------- NEWS.md | 15 + R/IC.R | 19 + R/aov_b.R | 9 R/bayes_factors.R | 5 R/bayes_pvalue.R | 11 R/bma_inference.R | 2 R/case_control_b.R | 6 R/chisq_test_b.R | 16 + R/coef.R | 5 R/cor_test_b.R | 13 - R/find_beta_parms.R | 5 R/find_invgamma_parms.R | 7 R/get_posterior_draws.R | 8 R/glm_b.R | 13 - R/lm_b-class.R | 2 R/mediate_b.R | 9 R/np_glm_b.R | 6 R/plot.R | 12 - R/plot_bands.R | 7 R/plot_dx.R | 13 + R/poisson_test_b.R | 6 R/predict.R | 10 R/print.R | 119 ++-------- R/prop_test_b.R | 10 R/sign_test_b.R | 2 R/summary.R | 382 +++++++++++++++++++++++++++++++++- R/t_test_b.R | 6 R/vcov.R | 7 R/wilcoxon_test_b.R | 10 man/IC.Rd | 19 - man/aov_b.Rd | 8 man/bayes_factors.Rd | 5 man/bayes_pvalue.Rd | 9 man/bma_inference.Rd | 2 man/case_control_b.Rd | 6 man/chisq_test_b.Rd | 10 man/coef.Rd | 3 man/cor_test_b.Rd | 10 man/find_beta_parms.Rd | 4 man/find_invgamma_parms.Rd | 6 man/get_posterior_draws.Rd | 6 man/glm_b.Rd | 13 - man/lm_b-class.Rd | 2 man/mediate_b.Rd | 9 man/np_glm_b.Rd | 6 man/plot.Rd | 11 man/plot_bands.Rd | 5 man/plot_dx.Rd | 11 man/poisson_test_b.Rd | 6 man/predict.Rd | 9 man/print.Rd | 4 man/prop_test_b.Rd | 8 man/sign_test_b.Rd | 2 man/summary.Rd | 20 + man/t_test_b.Rd | 6 man/vcov.Rd | 5 man/wilcoxon_test_b.Rd | 6 tests/testthat/test-case_control_b.R | 9 tests/testthat/test-chisq_test_b.R | 1 tests/testthat/test-cor_test_b.R | 5 tests/testthat/test-poisson_test_b.R | 9 tests/testthat/test-prop_test_b.R | 6 tests/testthat/test-sign_test_b.R | 6 tests/testthat/test-survfit_b.R | 10 tests/testthat/test-t_test_b.R | 7 tests/testthat/test-wilcoxon_test_b.R | 5 69 files changed, 1050 insertions(+), 462 deletions(-)
Title: Deal with Dependencies
Description: Manage dependencies during package development. This can
retrieve all dependencies that are used in ".R" files in the "R/"
directory, in ".Rmd" files in "vignettes/" directory and in 'roxygen2'
documentation of functions. There is a function to update the
"DESCRIPTION" file of your package with 'CRAN' packages or any other
remote package. All functions to retrieve dependencies of ".R"
scripts and ".Rmd" or ".qmd" files can be used independently of a
package development.
Author: Vincent Guyader [cre, aut] ,
Sebastien Rochette [aut] ,
Murielle Delmotte [aut] ,
Swann Floc'hlay [aut] ,
ThinkR [cph, fnd]
Maintainer: Vincent Guyader <vincent@thinkr.fr>
Diff between attachment versions 1.1.0 dated 2026-08-20 and 1.2.0 dated 2026-09-30
DESCRIPTION | 8 MD5 | 55 NEWS.md | 70 R/att_from_rscripts.R | 150 + R/att_to_description.R | 92 + build/vignette.rds |binary inst/doc/a-fill-pkg-description.R | 198 +- inst/doc/a-fill-pkg-description.Rmd | 14 inst/doc/a-fill-pkg-description.html | 1212 ++++++++-------- inst/doc/b-bookdown-and-scripts.R | 102 - inst/doc/b-bookdown-and-scripts.html | 955 ++++++------ inst/doc/create-dependencies-file.R | 68 inst/doc/create-dependencies-file.html | 825 +++++----- inst/doc/use_renv.R | 40 inst/doc/use_renv.html | 785 +++++----- man/att_amend_desc.Rd | 6 man/attachment-deprecated.Rd | 6 tests/testthat/f1.Rmd | 15 tests/testthat/f1Rmd | 174 +- tests/testthat/f2.R | 15 tests/testthat/f2R | 96 - tests/testthat/fake_namespace | 12 tests/testthat/quarto.qmd | 94 - tests/testthat/test-att_amend_desc_depends.R |only tests/testthat/test-att_amend_desc_pin_kept.R |only tests/testthat/test-att_amend_desc_version_pins_types.R |only tests/testthat/test-renv_create.R | 60 tests/testthat/test-renv_create2.R | 8 tests/testthat/test-rscript-partial-arg-matching.R |only tests/testthat/test-rscript-variable-is-not-a-package.R |only vignettes/a-fill-pkg-description.Rmd | 14 31 files changed, 2715 insertions(+), 2359 deletions(-)
Title: Text Mining Package
Description: A framework for text mining applications within R.
Author: Ingo Feinerer [aut] ,
Kurt Hornik [aut, cre] ,
Artifex Software, Inc. [ctb, cph]
Maintainer: Kurt Hornik <Kurt.Hornik@R-project.org>
Diff between tm versions 0.7-19 dated 2026-08-13 and 0.7-20 dated 2026-09-30
DESCRIPTION | 12 ++++++------ MD5 | 20 +++++++++++--------- NAMESPACE | 2 ++ R/generics.R |only R/pdftools.R | 4 ++-- build/partial.rdb |binary inst/NEWS.Rd | 11 +++++++++++ inst/doc/extensions.pdf |binary inst/doc/tm.pdf |binary man/generics.Rd |only man/meta.Rd | 1 - man/readTagged.Rd | 2 +- 12 files changed, 33 insertions(+), 19 deletions(-)
Title: Prior Diagnostics and Sensitivity Analysis
Description: Provides functions for prior and likelihood sensitivity analysis in Bayesian models. Currently it implements methods to determine the sensitivity of the posterior to power-scaling perturbations of the prior and likelihood.
Author: Noa Kallioinen [aut, cre] ,
Topi Paananen [aut] ,
Paul-Christian Buerkner [aut] ,
Aki Vehtari [aut] ,
Frank Weber [ctb] ,
Simon Taylor [rev],
Dylan Dijk [rev]
Maintainer: Noa Kallioinen <noa.kallioinen@helsinki.fi>
Diff between priorsense versions 1.2.0 dated 2025-10-28 and 1.4.0 dated 2026-09-30
priorsense-1.2.0/priorsense/R/get_draws.R |only priorsense-1.2.0/priorsense/inst/doc/powerscaling.R |only priorsense-1.2.0/priorsense/inst/doc/powerscaling.html |only priorsense-1.2.0/priorsense/inst/doc/powerscaling.qmd |only priorsense-1.2.0/priorsense/man/powerscale_plots.Rd |only priorsense-1.2.0/priorsense/vignettes/powerscaling.qmd |only priorsense-1.4.0/priorsense/DESCRIPTION | 57 priorsense-1.4.0/priorsense/MD5 | 164 +- priorsense-1.4.0/priorsense/NAMESPACE | 2 priorsense-1.4.0/priorsense/NEWS.md | 24 priorsense-1.4.0/priorsense/R/additional_divergence_measures.R | 194 +- priorsense-1.4.0/priorsense/R/brms-functions.R | 48 priorsense-1.4.0/priorsense/R/cjs.R | 67 priorsense-1.4.0/priorsense/R/create_priorsense_data.R | 70 priorsense-1.4.0/priorsense/R/ewcdf.R | 14 priorsense-1.4.0/priorsense/R/example_powerscale_model.R | 214 +- priorsense-1.4.0/priorsense/R/find_alpha_threshold.R | 50 priorsense-1.4.0/priorsense/R/helpers.R | 40 priorsense-1.4.0/priorsense/R/log_lik_draws.R | 48 priorsense-1.4.0/priorsense/R/log_prior_draws.R | 67 priorsense-1.4.0/priorsense/R/measure_divergence.R | 13 priorsense-1.4.0/priorsense/R/plots.R | 819 ++++++---- priorsense-1.4.0/priorsense/R/powerscale.R | 181 +- priorsense-1.4.0/priorsense/R/powerscale_derivative.R | 27 priorsense-1.4.0/priorsense/R/powerscale_gradients.R | 115 - priorsense-1.4.0/priorsense/R/powerscale_sensitivity.R | 147 + priorsense-1.4.0/priorsense/R/powerscale_sequence.R | 121 - priorsense-1.4.0/priorsense/R/print.R | 33 priorsense-1.4.0/priorsense/R/priorsense-package.R | 22 priorsense-1.4.0/priorsense/R/scale_draws.R | 10 priorsense-1.4.0/priorsense/R/scaled_log_ratio.R | 10 priorsense-1.4.0/priorsense/R/srr-stats-standards.R | 4 priorsense-1.4.0/priorsense/R/summarise_draws.R | 46 priorsense-1.4.0/priorsense/R/sysdata.rda |binary priorsense-1.4.0/priorsense/R/weighted_quantities.R | 88 - priorsense-1.4.0/priorsense/R/whiten_draws.R | 4 priorsense-1.4.0/priorsense/README.md | 184 -- priorsense-1.4.0/priorsense/build/vignette.rds |binary priorsense-1.4.0/priorsense/inst/CITATION | 149 + priorsense-1.4.0/priorsense/inst/auto |only priorsense-1.4.0/priorsense/inst/doc/getting_started.R |only priorsense-1.4.0/priorsense/inst/doc/getting_started.html |only priorsense-1.4.0/priorsense/inst/doc/getting_started.qmd |only priorsense-1.4.0/priorsense/inst/doc/papers.html |only priorsense-1.4.0/priorsense/inst/doc/papers.qmd |only priorsense-1.4.0/priorsense/inst/doc/priorsense_with_brms.R |only priorsense-1.4.0/priorsense/inst/doc/priorsense_with_brms.html |only priorsense-1.4.0/priorsense/inst/doc/priorsense_with_brms.qmd |only priorsense-1.4.0/priorsense/inst/doc/priorsense_with_jags.R | 70 priorsense-1.4.0/priorsense/inst/doc/priorsense_with_jags.html | 153 - priorsense-1.4.0/priorsense/inst/doc/priorsense_with_jags.qmd | 72 priorsense-1.4.0/priorsense/inst/doc/priorsense_with_nimble.R |only priorsense-1.4.0/priorsense/inst/doc/priorsense_with_nimble.html |only priorsense-1.4.0/priorsense/inst/doc/priorsense_with_nimble.qmd |only priorsense-1.4.0/priorsense/inst/doc/priorsense_with_stan.R |only priorsense-1.4.0/priorsense/inst/doc/priorsense_with_stan.html |only priorsense-1.4.0/priorsense/inst/doc/priorsense_with_stan.qmd |only priorsense-1.4.0/priorsense/inst/extdata |only priorsense-1.4.0/priorsense/inst/logo/logo.R | 47 priorsense-1.4.0/priorsense/man/cjs_dist.Rd | 2 priorsense-1.4.0/priorsense/man/create-priorsense-data.Rd | 6 priorsense-1.4.0/priorsense/man/example_powerscale_model.Rd | 16 priorsense-1.4.0/priorsense/man/figures/logo.svg |only priorsense-1.4.0/priorsense/man/log_prior_draws.Rd | 2 priorsense-1.4.0/priorsense/man/powerscale-gradients.Rd | 33 priorsense-1.4.0/priorsense/man/powerscale-overview.Rd | 49 priorsense-1.4.0/priorsense/man/powerscale-plots.Rd |only priorsense-1.4.0/priorsense/man/powerscale-sensitivity.Rd | 58 priorsense-1.4.0/priorsense/man/priorsense-package.Rd | 23 priorsense-1.4.0/priorsense/tests/testthat/_snaps/plots/normal-model-density-plot.svg | 516 ++---- priorsense-1.4.0/priorsense/tests/testthat/_snaps/plots/normal-model-ecdf-plot.svg | 486 ++--- priorsense-1.4.0/priorsense/tests/testthat/_snaps/plots/normal-model-quantities-plot.svg | 548 +++--- priorsense-1.4.0/priorsense/tests/testthat/test_brms.R |only priorsense-1.4.0/priorsense/tests/testthat/test_cjs.R | 3 priorsense-1.4.0/priorsense/tests/testthat/test_cmdstan.R | 4 priorsense-1.4.0/priorsense/tests/testthat/test_component_name.R |only priorsense-1.4.0/priorsense/tests/testthat/test_conjugate.R | 191 +- priorsense-1.4.0/priorsense/tests/testthat/test_deriv.R | 18 priorsense-1.4.0/priorsense/tests/testthat/test_div_measures.R | 26 priorsense-1.4.0/priorsense/tests/testthat/test_jags.R |only priorsense-1.4.0/priorsense/tests/testthat/test_moment_matching.R | 34 priorsense-1.4.0/priorsense/tests/testthat/test_nimble.R |only priorsense-1.4.0/priorsense/tests/testthat/test_plots.R | 120 - priorsense-1.4.0/priorsense/tests/testthat/test_powerscale.R | 181 +- priorsense-1.4.0/priorsense/tests/testthat/test_print.R | 1 priorsense-1.4.0/priorsense/tests/testthat/test_resample.R | 37 priorsense-1.4.0/priorsense/tests/testthat/test_rstan.R | 89 - priorsense-1.4.0/priorsense/tests/testthat/test_scale_draws.R | 15 priorsense-1.4.0/priorsense/tests/testthat/test_variables.R | 28 priorsense-1.4.0/priorsense/tests/testthat/test_whiten_draws.R | 10 priorsense-1.4.0/priorsense/vignettes/_quarto.yaml |only priorsense-1.4.0/priorsense/vignettes/getting_started.qmd |only priorsense-1.4.0/priorsense/vignettes/papers.bib |only priorsense-1.4.0/priorsense/vignettes/papers.csl |only priorsense-1.4.0/priorsense/vignettes/papers.qmd |only priorsense-1.4.0/priorsense/vignettes/priorsense_with_brms.qmd |only priorsense-1.4.0/priorsense/vignettes/priorsense_with_jags.qmd | 72 priorsense-1.4.0/priorsense/vignettes/priorsense_with_nimble.qmd |only priorsense-1.4.0/priorsense/vignettes/priorsense_with_stan.qmd |only 99 files changed, 3340 insertions(+), 2602 deletions(-)
Title: 'PLINK' 2 Binary (.pgen) Reader
Description: A thin wrapper over 'PLINK' 2's core libraries which provides an R
interface for reading .pgen files. A minimal .pvar loader and a basic
.pgen writer are also included. Chang et al. (2015) <doi:10.1186/s13742-015-0047-8>.
Author: Christopher Chang [aut, cre],
Eric Biggers [ctb, cph] ,
Yann Collet [ctb] ,
Meta Platforms, Inc. [cph] ,
Evan Nemerson [ctb, cph] ,
Przemyslaw Skibinski [ctb] ,
Nick Terrell [ctb]
Maintainer: Christopher Chang <chrchang@alumni.caltech.edu>
Diff between pgenlibr versions 0.6.2 dated 2026-06-05 and 0.7.0 dated 2026-09-30
DESCRIPTION | 16 MD5 | 92 +- NAMESPACE | 6 NEWS.md | 6 R/RcppExports.R | 111 +++ build/partial.rdb |binary configure.ac | 2 man/AppendAlleles.Rd |only man/AppendBiallelic.Rd |only man/AppendDosages.Rd |only man/ClosePgenWriter.Rd |only man/GetWrittenVariantCt.Rd |only man/NewPgenWriter.Rd |only man/pgenlibr-package.Rd | 8 src/Makevars.in | 10 src/Makevars.win | 2 src/RcppExports.cpp | 80 ++ src/pgenlibr.cpp | 548 ++++++++++++++ tests |only tools/include/include/pgenlib_ffi_support.cc | 174 ++++ tools/include/include/pgenlib_ffi_support.h | 24 tools/include/include/pgenlib_misc.cc | 45 + tools/include/include/pgenlib_misc.h | 17 tools/include/include/pgenlib_read.cc | 992 +++++++++++++++++++++------ tools/include/include/pgenlib_read.h | 2 tools/include/include/pgenlib_write.cc |only tools/include/include/pgenlib_write.h |only tools/include/include/plink2_base.cc | 24 tools/include/include/plink2_base.h | 13 tools/include/include/plink2_bgzf.cc | 2 tools/include/include/plink2_bgzf.h | 2 tools/include/include/plink2_bits.cc | 4 tools/include/include/plink2_bits.h | 18 tools/include/include/plink2_float.cc | 86 ++ tools/include/include/plink2_float.h | 300 ++++++++ tools/include/include/plink2_htable.cc | 2 tools/include/include/plink2_htable.h | 2 tools/include/include/plink2_memory.cc | 2 tools/include/include/plink2_memory.h | 2 tools/include/include/plink2_simd.cc | 2 tools/include/include/plink2_simd.h | 2 tools/include/include/plink2_string.cc | 2 tools/include/include/plink2_string.h | 33 tools/include/include/plink2_text.cc | 2 tools/include/include/plink2_text.h | 2 tools/include/include/plink2_thread.cc | 2 tools/include/include/plink2_thread.h | 2 tools/include/include/plink2_zstfile.cc | 2 tools/include/include/plink2_zstfile.h | 2 tools/include/include/pvar_ffi_support.cc | 2 tools/include/include/pvar_ffi_support.h | 2 51 files changed, 2325 insertions(+), 322 deletions(-)
Title: Stepwise Covariate Modeling for 'nlmixr2' Models
Description: Stepwise covariate modeling (SCM) for nonlinear mixed-effects
models fitted with 'nlmixr2'. Forward inclusion and backward elimination
are driven by likelihood-ratio tests, and the covariate terms are
generated inside the model body, so continuous covariates are centered
and categorical covariates expanded into indicator columns without
editing the model by hand. Candidate fits can be cached and resumed,
fitted in parallel, and reviewed through per-step and all-candidate
summary tables. The approach follows Jonsson and Karlsson (1998)
<doi:10.1023/A:1011970125687>, and the implementation in
'Perl-speaks-NONMEM' described by Lindbom, Ribbing and Jonsson (2004)
<doi:10.1016/j.cmpb.2003.11.003>.
Author: Justin Wilkins [aut, cre, cph] ,
Matthew Fidler [aut] ,
Yaping Liu [aut] ,
Bill Denney [aut] ,
Vipul Mann [aut],
Vishal Sarsani [aut] ,
Christian Bartels [ctb]
Maintainer: Justin Wilkins <justin.wilkins@occams.com>
Diff between nlmixr2scm versions 0.4 dated 2026-09-24 and 0.4.1 dated 2026-09-30
DESCRIPTION | 6 MD5 | 23 NAMESPACE | 3 NEWS.md | 149 - R/scm.R | 117 - R/summary.R |only README.md | 388 +-- inst/doc/runSCM.Rmd | 375 ++- inst/doc/runSCM.html | 485 ++-- man/runSCM.Rd | 24 man/summary.nlmixr2scm.Rd |only tests/testthat/test-scm.R | 4395 +++++++++++++++++++++--------------------- tests/testthat/test-summary.R |only vignettes/runSCM.Rmd | 375 ++- 14 files changed, 3430 insertions(+), 2910 deletions(-)
Title: Multivariate Probit Models
Description: Tools for estimating multivariate probit models,
calculating conditional and unconditional expectations,
and calculating marginal effects on conditional and unconditional
expectations.
Author: Arne Henningsen [aut, cre]
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>
Diff between mvProbit versions 0.1-10 dated 2021-01-11 and 0.1-12 dated 2026-09-30
DESCRIPTION | 16 ++++++++++------ MD5 | 22 +++++++++++----------- R/mvProbitExp.R | 2 +- R/mvProbitLogLik.R | 2 +- R/mvProbitMargEff.R | 2 +- inst/NEWS.Rd | 5 +++++ tests/mvProbitEst.R | 2 +- tests/mvProbitMargEff2.R | 2 +- tests/mvProbitMargEff2.Rout.save | 20 +++++--------------- tests/mvProbitTest.R | 2 +- tests/pmvnormWrapTest.R | 4 ++-- tests/pmvnormWrapTest.Rout.save | 22 ++++++---------------- 12 files changed, 45 insertions(+), 56 deletions(-)
Title: Information-Theoretic Measures for Revealing Variable
Interactions
Description: Implements information-theoretic measures to explore variable interactions, including KSG mutual information estimation for continuous variables from Kraskov et al. (2004) <doi:10.1103/PhysRevE.69.066138>, knockoff conditional mutual information described in Zhang & Chen (2025) <doi:10.1126/sciadv.adu6464>, synergistic-unique-redundant decomposition introduced by Martinez-Sanchez et al. (2024) <doi:10.1038/s41467-024-53373-4>, and information imbalance gain following Del Tatto et al. (2024) <doi:10.1073/pnas.2317256121>, allowing detection of complex and diverse relationships among variables.
Author: Wenbo Lyu [aut, cre, cph]
Maintainer: Wenbo Lyu <lyu.geosocial@gmail.com>
Diff between infoxtr versions 0.2 dated 2026-03-30 and 0.3 dated 2026-09-30
infoxtr-0.2/infoxtr/inst/doc/surd.Rmd |only infoxtr-0.2/infoxtr/inst/doc/surd.html |only infoxtr-0.2/infoxtr/vignettes/surd.Rmd |only infoxtr-0.2/infoxtr/vignettes/surd.Rmd.orig |only infoxtr-0.3/infoxtr/DESCRIPTION | 11 infoxtr-0.3/infoxtr/MD5 | 96 ++-- infoxtr-0.3/infoxtr/NAMESPACE | 26 - infoxtr-0.3/infoxtr/NEWS.md | 42 + infoxtr-0.3/infoxtr/R/Agenerics.R | 24 - infoxtr-0.3/infoxtr/R/RcppExports.R | 56 +- infoxtr-0.3/infoxtr/R/discretize.R | 81 +-- infoxtr-0.3/infoxtr/R/entropy.R | 242 +++++------ infoxtr-0.3/infoxtr/R/infoimbalance.R |only infoxtr-0.3/infoxtr/R/infoxtr-package.R | 8 infoxtr-0.3/infoxtr/R/internal_utility.R | 76 +-- infoxtr-0.3/infoxtr/R/kocmi.R | 106 ++-- infoxtr-0.3/infoxtr/R/surd.R | 134 +++--- infoxtr-0.3/infoxtr/R/te.R | 60 +- infoxtr-0.3/infoxtr/R/zzz.R | 7 infoxtr-0.3/infoxtr/README.md | 36 + infoxtr-0.3/infoxtr/build/vignette.rds |binary infoxtr-0.3/infoxtr/inst/CITATION | 20 infoxtr-0.3/infoxtr/inst/doc/main1_imbalance.Rmd |only infoxtr-0.3/infoxtr/inst/doc/main1_imbalance.html |only infoxtr-0.3/infoxtr/inst/doc/main2_surd.Rmd |only infoxtr-0.3/infoxtr/inst/doc/main2_surd.html |only infoxtr-0.3/infoxtr/inst/include/infoxtr.h | 1 infoxtr-0.3/infoxtr/inst/include/infoxtr/distance.hpp | 135 +++++- infoxtr-0.3/infoxtr/inst/include/infoxtr/infoimbalance.hpp |only infoxtr-0.3/infoxtr/inst/include/infoxtr/kocmi.hpp | 35 - infoxtr-0.3/infoxtr/inst/include/infoxtr/ksginfo.hpp | 26 - infoxtr-0.3/infoxtr/inst/include/infoxtr/lagg.hpp | 36 + infoxtr-0.3/infoxtr/inst/include/infoxtr/neighbor.hpp | 35 + infoxtr-0.3/infoxtr/inst/include/infoxtr/transferentropy.hpp | 9 infoxtr-0.3/infoxtr/man/ce.Rd | 68 +-- infoxtr-0.3/infoxtr/man/cmi.Rd | 97 ++-- infoxtr-0.3/infoxtr/man/discretize.Rd | 124 ++--- infoxtr-0.3/infoxtr/man/entropy.Rd | 65 +- infoxtr-0.3/infoxtr/man/figures/ig |only infoxtr-0.3/infoxtr/man/figures/surd/fig_surd_cvds-1.png |binary infoxtr-0.3/infoxtr/man/imbalance_gain.Rd |only infoxtr-0.3/infoxtr/man/info_imbalance.Rd |only infoxtr-0.3/infoxtr/man/je.Rd | 64 +- infoxtr-0.3/infoxtr/man/kocmi.Rd | 182 ++++---- infoxtr-0.3/infoxtr/man/mi.Rd | 88 ++-- infoxtr-0.3/infoxtr/man/surd.Rd | 206 ++++----- infoxtr-0.3/infoxtr/man/te.Rd | 114 ++--- infoxtr-0.3/infoxtr/src/DistExps.cpp | 11 infoxtr-0.3/infoxtr/src/InfoImbalance.cpp |only infoxtr-0.3/infoxtr/src/InfotheoExps.cpp | 24 - infoxtr-0.3/infoxtr/src/KOCMI.cpp | 5 infoxtr-0.3/infoxtr/src/NNExps.cpp | 6 infoxtr-0.3/infoxtr/src/RcppExports.cpp | 163 +++++-- infoxtr-0.3/infoxtr/src/SURD.cpp | 19 infoxtr-0.3/infoxtr/vignettes/main1_imbalance.Rmd |only infoxtr-0.3/infoxtr/vignettes/main1_imbalance.Rmd.orig |only infoxtr-0.3/infoxtr/vignettes/main2_surd.Rmd |only infoxtr-0.3/infoxtr/vignettes/main2_surd.Rmd.orig |only 58 files changed, 1412 insertions(+), 1126 deletions(-)
Title: Taichi-Diagram Visualization for Two Data Sources
Description: A data visualization design that compares two (usually on a par
with each other) data sources on one grid of taichi (yin-yang) diagrams,
where the two interlocking fish of every symbol are filled by the two
sources, while inheriting 'ggplot2' features.
Author: Youzhi Yu [aut, cre]
Maintainer: Youzhi Yu <yuyouzhi666@icloud.com>
Diff between ggtaichi versions 0.2.0 dated 2026-08-24 and 0.3.0 dated 2026-09-30
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Title: Simplify Survival Data Analysis and Model Fitting
Description: Inspect survival data, plot Kaplan-Meier curves, assess the
proportional hazards assumption, fit parametric survival models,
predict and plot survival and hazards, and export the outputs to
'Excel'. A simple interface for fitting survival models using
flexsurv::flexsurvreg(), flexsurv::flexsurvspline(),
flexsurvcure::flexsurvcure(), and survival::survreg().
Author: Niall Davison [aut, cre] ,
Brad Kievit [aut],
Maple Health Group, LLC [cph, fnd]
Maintainer: Niall Davison <niall.davison@maplehealthgroup.com>
Diff between easysurv versions 2.0.2 dated 2025-10-08 and 2.0.3 dated 2026-09-30
DESCRIPTION | 6 ++-- MD5 | 12 ++++---- NEWS.md | 4 ++ R/predict.R | 11 ++----- README.md | 23 ++++++++------- inst/doc/easysurv.html | 8 ++--- tests/testthat/test-predict_and_plot.R | 49 +++++++++++++++++++++++++++++++++ 7 files changed, 83 insertions(+), 30 deletions(-)
Title: Enhances 'xpose' Diagnostics for Pharmacometric Models from
'Certara.RsNLME' and Phoenix NLME
Description: Facilitates the creation of 'xpose' data objects from Nonlinear Mixed
Effects (NLME) model outputs produced by 'Certara.RsNLME' or Phoenix NLME. This
integration enables users to utilize all 'ggplot2'-based plotting functions available
in 'xpose' for thorough model diagnostics and data visualization. Additionally, the
package introduces specialized plotting functions tailored for covariate model
evaluation, extending the analytical capabilities beyond those offered by 'xpose' alone.
Author: James Craig [aut, cre],
Michael Tomashevskiy [aut],
Soltanshahi Fred [aut],
Shuhua Hu [ctb],
Certara USA, Inc [cph, fnd]
Maintainer: James Craig <james.craig@certara.com>
Diff between Certara.Xpose.NLME versions 2.0.2 dated 2025-01-28 and 2.1.0 dated 2026-09-30
Certara.Xpose.NLME-2.0.2/Certara.Xpose.NLME/tests/testthat/_snaps/cov_distrib |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/DESCRIPTION | 13 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/MD5 | 200 +- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/NAMESPACE | 62 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/add_descrXpose.R | 96 - Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/add_unitsdata_ind.R | 45 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/compare_etaShrinkageNlme.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/compare_prmNlme.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/create_input.R | 121 - Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/create_overallDF.R | 97 - Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/create_prmDF.R | 759 ++++----- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/create_xposeNlme.R | 780 +++++++--- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/eta_shrinkage_subject.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/examples.R | 52 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/get_bootSummaryNlme.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/get_conditionNumber.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/get_method.R | 128 + Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/get_overallNlme.R | 157 +- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/get_prmNlme.R | 228 +- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/get_summaryNlme.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/get_term.R | 43 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/globals.R | 76 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/join_d1Etas.R | 52 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/load_convergenceData.R | 210 +- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/load_dmp_txt.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/mcp_session.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/mcp_tools.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/nlme_time_conversion.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/pair_by_occurrence.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/parse_cols1_mappings.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/parse_engine_metadata.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/parse_modelInfo.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/parse_outTxtCondition.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/parse_outTxtUnits.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/parse_pml_observes.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/prepare_inputStparm.R | 319 ++-- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/prepare_inputStparmResid.R | 281 ++- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/read_dataFile.R | 129 - Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/read_progressFile.R | 114 - Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/update_etaShrinkageNlme.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/xposeNlme.R | 542 +++++- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/xposeNlmeModel.R | 346 +++- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/R/xposeNlmeUtils.r | 362 ++-- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/data/xpdb_ex_Nlme.rda |binary Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/inst/extdata/bootstrap |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/inst/extdata/hhmm_time |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/inst/extdata/phoenix_temp |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/inst/extdata/units_outtxt |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/inst/mcp |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/inst/scripts |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/as_flextable.prmComparisonNlme.Rd |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/compare_etaShrinkageNlme.Rd |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/compare_prmNlme.Rd |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/eta_vs_cov.Rd | 236 +-- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/get_bootSummaryNlme.Rd |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/get_etaSubjectNlme.Rd |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/get_overallNlme.Rd | 130 + Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/get_prmNlme.Rd | 119 - Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/get_summaryNlme.Rd |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/prm_vs_cov.Rd | 228 +- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/res_vs_cov.Rd | 212 +- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/update_etaShrinkageNlme.Rd |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/xpdb_ex_Nlme.Rd | 61 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/xplot_box.Rd | 228 +- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/xposeNlme.Rd | 239 ++- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/xposeNlmeModel.Rd | 154 + Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/man/xpose_mcp_tools.Rd |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/_snaps/Emax_Baseline_2Cat1ContCovariates.md | 84 - Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/_snaps/Emax_Baseline_T_SpecialCovNameSaveAsInputData.md | 82 - Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/_snaps/combined_gof.md | 94 - Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/_snaps/cov_distrib.md | 74 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/_snaps/emax_xposeNlmeModel.md | 68 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/_snaps/eta_distrib.md | 68 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/_snaps/get_bootSummaryNlme.md |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/_snaps/get_prmNlme.md | 32 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/_snaps/multIDs_xposeNlmeModel.md | 68 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/_snaps/notime_model.md | 70 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/_snaps/prm_iteration.md | 581 +++---- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/_snaps/time_model.md | 86 - Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/_snaps/time_xposeNlmeModel.md | 234 +-- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/helper-mcp.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/helper-xpdb.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_Emax_Baseline_T_SpecialCovNameSaveAsInputData.R | 43 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_compare_prmNlme.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_cov_distrib.R | 181 -- Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_dmp_embedded_model.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_engine_metadata_import.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_eta_distrib.R | 54 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_eta_shrinkage_subject.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_get_bootSummaryNlme.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_get_overallNlme.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_get_summaryNlme.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_hhmm_time_xposeNlme.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_import_edge_cases.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_load_convergenceData.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_load_dmp_txt.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_log_parsers.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_mcp_artifacts.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_mcp_session.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_mcp_tools.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_nlme_time_conversion.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_pair_by_occurrence.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_parse_modelInfo.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_parse_pml_observes.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_phoenix_temp_xposeNlme.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_prepare_inputStparm.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_prepare_inputStparmResid.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_prm_iteration.R | 75 Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_read_dataFile.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_splice_dmpResidualsPosthoc.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_xplot_box.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_xposeNlmeModel_dispatch.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_xposeNlmeModel_units.R |only Certara.Xpose.NLME-2.1.0/Certara.Xpose.NLME/tests/testthat/test_xposeNlme_bootstrap_guard.R |only 114 files changed, 5266 insertions(+), 3447 deletions(-)
More information about Certara.Xpose.NLME at CRAN
Permanent link
Title: Bradley-Terry Models
Description: Specify and fit the Bradley-Terry model, including structured
versions in which the parameters are related to explanatory variables
through a linear predictor and versions with contest-specific effects,
such as a home advantage.
Author: Heather Turner [aut, cre],
David Firth [aut]
Maintainer: Heather Turner <ht@heatherturner.net>
Diff between BradleyTerry2 versions 1.1.3 dated 2025-04-10 and 1.1.4 dated 2026-09-30
BradleyTerry2-1.1.3/BradleyTerry2/tests/testthat/outputs/nested.rds |only BradleyTerry2-1.1.4/BradleyTerry2/DESCRIPTION | 14 BradleyTerry2-1.1.4/BradleyTerry2/MD5 | 59 BradleyTerry2-1.1.4/BradleyTerry2/NAMESPACE | 102 - BradleyTerry2-1.1.4/BradleyTerry2/NEWS.md | 9 BradleyTerry2-1.1.4/BradleyTerry2/R/BTabilities.R | 12 BradleyTerry2-1.1.4/BradleyTerry2/R/BTm.R | 10 BradleyTerry2-1.1.4/BradleyTerry2/R/Diff.R | 1 BradleyTerry2-1.1.4/BradleyTerry2/R/add1.BTm.R | 2 BradleyTerry2-1.1.4/BradleyTerry2/R/flatlizards.R | 2 BradleyTerry2-1.1.4/BradleyTerry2/R/icehockey.R | 2 BradleyTerry2-1.1.4/BradleyTerry2/build/partial.rdb |binary BradleyTerry2-1.1.4/BradleyTerry2/build/vignette.rds |binary BradleyTerry2-1.1.4/BradleyTerry2/data/CEMS.R | 985 ++++------ BradleyTerry2-1.1.4/BradleyTerry2/data/chameleons.R | 291 +- BradleyTerry2-1.1.4/BradleyTerry2/data/citations.R | 7 BradleyTerry2-1.1.4/BradleyTerry2/data/icehockey.R | 208 +- BradleyTerry2-1.1.4/BradleyTerry2/data/seeds.R | 17 BradleyTerry2-1.1.4/BradleyTerry2/data/sound.fields.R | 39 BradleyTerry2-1.1.4/BradleyTerry2/data/springall.R | 67 BradleyTerry2-1.1.4/BradleyTerry2/inst/doc/BradleyTerry.R | 55 BradleyTerry2-1.1.4/BradleyTerry2/inst/doc/BradleyTerry.Rmd | 11 BradleyTerry2-1.1.4/BradleyTerry2/inst/doc/BradleyTerry.html | 32 BradleyTerry2-1.1.4/BradleyTerry2/man/BTabilities.Rd | 10 BradleyTerry2-1.1.4/BradleyTerry2/man/BTm.Rd | 10 BradleyTerry2-1.1.4/BradleyTerry2/man/flatlizards.Rd | 2 BradleyTerry2-1.1.4/BradleyTerry2/man/icehockey.Rd | 2 BradleyTerry2-1.1.4/BradleyTerry2/man/reexports.Rd | 2 BradleyTerry2-1.1.4/BradleyTerry2/tests/testthat/test-BTabilities.R | 11 BradleyTerry2-1.1.4/BradleyTerry2/tests/testthat/test-nested.R | 24 BradleyTerry2-1.1.4/BradleyTerry2/vignettes/BradleyTerry.Rmd | 11 31 files changed, 1041 insertions(+), 956 deletions(-)
Title: Automatic Scoring of the Cognitive Reflection Test
Description: Automatic coding of open-ended responses to the Cognitive Reflection Test (CRT), a widely used class of tests in cognitive science and psychology that assess the tendency to override an initial intuitive (but incorrect) answer and engage in reflection to reach a correct solution. The package standardizes CRT response coding across datasets in cognitive psychology, decision-making, and related fields. Automated coding reduces manual effort and improves reproducibility by limiting variability from subjective interpretation of open-ended responses. The package supports automatic coding and machine scoring for the original English-language CRT (Frederick, 2005) <doi:10.1257/089533005775196732>, CRT4 and CRT7 (Toplak et al., 2014) <doi:10.1080/13546783.2013.844729>, CRT-long (Primi et al., 2016) <doi:10.1002/bdm.1883>, and CRT-2 (Thomson & Oppenheimer, 2016) <doi:10.1017/s1930297500007622>.
Author: Giuseppe Corbelli [aut, cre]
Maintainer: Giuseppe Corbelli <giuseppe.corbelli@uninettunouniversity.net>
Diff between reflectR versions 2.1.4 dated 2025-08-27 and 2.2.0 dated 2026-09-30
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- NEWS.md | 4 ++++ R/CRT.R | 14 ++++++++------ R/CRT4.R | 18 ++++++++++-------- R/CRT7.R | 30 ++++++++++++++++-------------- R/CRTlong.R | 26 ++++++++++++++------------ R/CRTtwo.R | 14 ++++++++------ R/itaCRTtwo.R | 21 +++++++++------------ R/zzz.R | 2 +- inst/WORDLIST | 1 + 11 files changed, 84 insertions(+), 72 deletions(-)
Title: Optimal Binning and Weight of Evidence Framework for Modeling
Description: High-performance implementation of 37 optimal binning algorithms
(16 categorical, 21 numerical) for Weight of Evidence ('WoE') transformation,
credit scoring, and risk modeling. Includes advanced methods such as Mixed
Integer Linear Programming ('MILP'), Genetic Algorithms, Simulated Annealing,
and Monotonic Regression. Features automatic method selection based on
Information Value ('IV') maximization, strict monotonicity enforcement, and
efficient handling of large datasets via 'Rcpp'. Provides automated variable
screening by Information Value strength and bin ordering, and generation of
the equivalent 'SQL' 'CASE' expressions for in-database scoring. Fully
integrated with the 'tidymodels' ecosystem for building robust machine
learning pipelines.
Based on methods described in Siddiqi (2006) <doi:10.1002/9781119201731>
and Navas-Palencia (2020) <doi:10.48550/arXiv.2001.08025>.
Author: Jose Evandeilton Lopes [aut, cre, cph]
Maintainer: Jose Evandeilton Lopes <evandeilton@gmail.com>
Diff between OptimalBinningWoE versions 1.13.5 dated 2026-08-31 and 1.14.0 dated 2026-09-30
DESCRIPTION | 10 MD5 | 333 +++---- NEWS.md | 187 ++++ R/ob_apply_woe_cat.R | 33 R/ob_apply_woe_num.R | 23 R/ob_binning_cutpoints_cat.R | 22 R/ob_binning_cutpoints_num.R | 21 R/ob_check_distincts.R | 11 R/ob_logistic_regression.R | 40 R/ob_preprocess.R | 8 R/ob_utilities.R | 52 + R/obc_cm.R | 16 R/obc_dmiv.R | 17 R/obc_dp.R | 16 R/obc_fetb.R | 31 R/obc_gmb.R | 9 R/obc_ivb.R | 10 R/obc_jedi.R | 8 R/obc_jedi_mwoe.R | 6 R/obc_mba.R | 7 R/obc_milp.R | 11 R/obc_mob.R | 2 R/obc_sab.R | 10 R/obc_sblp.R | 2 R/obc_sketch.R | 7 R/obc_swb.R | 6 R/obc_udt.R | 6 R/obn_bb.R | 16 R/obn_cm.R | 5 R/obn_dmiv.R | 16 R/obn_dp.R | 11 R/obn_ewb.R | 11 R/obn_fast_mdlp.R | 49 - R/obn_fetb.R | 18 R/obn_ir.R | 13 R/obn_jedi.R | 33 R/obn_jedi_mwoe.R | 15 R/obn_kmb.R | 34 R/obn_ldb.R | 31 R/obn_lpdb.R | 19 R/obn_mblp.R | 47 - R/obn_mdlp.R | 27 R/obn_mob.R | 43 - R/obn_mrblp.R | 34 R/obn_oslp.R | 27 R/obn_sketch.R | 84 - R/obn_ubsd.R | 24 R/obn_udt.R | 7 R/obwoe.R | 225 +++-- R/obwoe_engine.R | 2 R/obwoe_report.R | 70 + R/obwoe_score.R | 29 R/obwoe_scorecard.R | 66 + R/obwoe_select.R | 38 R/obwoe_sql.R | 43 - R/step_obwoe.R | 37 README.md | 2 inst/WORDLIST | 2 inst/doc/algorithms.html | 110 +- inst/doc/industrial-pipeline.html | 12 inst/doc/introduction.html | 78 - man/ob_apply_woe_cat.Rd | 33 man/ob_apply_woe_num.Rd | 23 man/ob_categorical_cm.Rd | 14 man/ob_categorical_dmiv.Rd | 17 man/ob_categorical_dp.Rd | 16 man/ob_categorical_fetb.Rd | 31 man/ob_categorical_gmb.Rd | 9 man/ob_categorical_ivb.Rd | 10 man/ob_categorical_jedi.Rd | 6 man/ob_categorical_jedi_mwoe.Rd | 4 man/ob_categorical_mba.Rd | 5 man/ob_categorical_milp.Rd | 9 man/ob_categorical_sab.Rd | 8 man/ob_categorical_sketch.Rd | 5 man/ob_categorical_swb.Rd | 4 man/ob_categorical_udt.Rd | 4 man/ob_check_distincts.Rd | 9 man/ob_cutpoints_cat.Rd | 13 man/ob_cutpoints_num.Rd | 12 man/ob_numerical_bb.Rd | 14 man/ob_numerical_cm.Rd | 3 man/ob_numerical_dmiv.Rd | 14 man/ob_numerical_dp.Rd | 4 man/ob_numerical_ewb.Rd | 4 man/ob_numerical_fast_mdlp.Rd | 44 - man/ob_numerical_fetb.Rd | 16 man/ob_numerical_ir.Rd | 8 man/ob_numerical_jedi.Rd | 28 man/ob_numerical_jedi_mwoe.Rd | 15 man/ob_numerical_kmb.Rd | 29 man/ob_numerical_ldb.Rd | 21 man/ob_numerical_lpdb.Rd | 7 man/ob_numerical_mblp.Rd | 37 man/ob_numerical_mdlp.Rd | 17 man/ob_numerical_mob.Rd | 35 man/ob_numerical_mrblp.Rd | 26 man/ob_numerical_oslp.Rd | 19 man/ob_numerical_sketch.Rd | 44 - man/ob_numerical_ubsd.Rd | 16 man/ob_numerical_udt.Rd | 5 man/ob_preprocess.Rd | 8 man/obwoe_apply.Rd | 3 man/obwoe_gains.Rd | 5 man/obwoe_psi.Rd | 2 man/obwoe_select.Rd | 3 man/obwoe_sql.Rd | 5 src/Makevars | 2 src/Makevars.win | 2 src/OBC_CM_v5.cpp | 187 ++-- src/OBC_DMIV_v5.cpp | 763 ++++++----------- src/OBC_DP_v5.cpp | 852 ++++++++----------- src/OBC_FETB_v5.cpp | 417 ++++++--- src/OBC_GMB_v5.cpp | 678 +++++++-------- src/OBC_IVB_v5.cpp | 313 ++++--- src/OBC_JEDIMWoE_v5.cpp | 997 +++++++++-------------- src/OBC_JEDI_v5.cpp | 568 +++++-------- src/OBC_MBA_v5.cpp | 273 ++---- src/OBC_MILP_v5.cpp | 544 +++++------- src/OBC_MOB_v5.cpp | 207 +++- src/OBC_SAB_v5.cpp | 250 +++-- src/OBC_SBLP_v5.cpp | 827 ++++++++----------- src/OBC_SWB_v5.cpp | 473 +++++++---- src/OBC_Sketch_v5.cpp | 382 ++++++-- src/OBC_UDT_v5.cpp | 470 +++++++--- src/OBN_BB_v5.cpp | 187 ++-- src/OBN_CM_v5.cpp | 673 +++++---------- src/OBN_DMIV_v5.cpp | 212 +++- src/OBN_DP_v5.cpp | 191 ++-- src/OBN_EWB_v5.cpp | 310 +++---- src/OBN_FETB_v5.cpp | 339 +++++-- src/OBN_FastMDLPM_v5.cpp | 1417 +++++++++++---------------------- src/OBN_IR_v5.cpp | 741 +++++++---------- src/OBN_JEDIMWoE_v5.cpp | 586 ++++++------- src/OBN_JEDI_v5.cpp | 466 +++++----- src/OBN_KMB_v5.cpp | 611 +++++++------- src/OBN_LDB_v5.cpp | 309 ++++--- src/OBN_LPDB_v5.cpp | 854 +++++++++++-------- src/OBN_MBLP_v5.cpp | 306 +++---- src/OBN_MDLP_v5.cpp | 656 +++++---------- src/OBN_MOB_v5.cpp | 1058 +++++++----------------- src/OBN_MRBLP_v5.cpp | 850 ++++++------------- src/OBN_OSLP_v5.cpp | 845 ++++++------------- src/OBN_Sketch_v5.cpp | 1159 ++++++++------------------ src/OBN_UBSD_v5.cpp | 993 +++++++---------------- src/OBN_UDT_v5.cpp | 520 ++++++------ src/OB_ApplyWoECat.cpp | 403 +++++---- src/OB_ApplyWoENum.cpp | 409 ++++----- src/OB_CheckDistinctsLength.cpp | 144 +-- src/OB_Correlation.cpp | 1231 +++++++++++++++++----------- src/OB_Cutpoints.cpp | 256 +++-- src/OB_DataPrep.cpp | 485 +++++------ src/OB_LogisticRegression.cpp | 449 +++++++--- src/OB_Utils.cpp | 253 ++++- src/RcppExports.cpp | 1 src/common/bin_structures.h | 27 src/common/chi_square_utils.h | 13 src/common/entropy_utils.h | 6 src/common/monotonicity_utils.h | 18 src/common/optimal_binning_common.h | 12 src/common/woe_iv_utils.h | 4 tests/testthat/test-audit-catA.R |only tests/testthat/test-audit-catB.R |only tests/testthat/test-audit-catC.R |only tests/testthat/test-audit-core.R |only tests/testthat/test-audit-numA.R |only tests/testthat/test-audit-numB.R |only tests/testthat/test-audit-numC.R |only tests/testthat/test-audit-numD.R |only tests/testthat/test-audit-rlayer.R |only tests/testthat/test-obwoe-scorecard.R | 7 tests/testthat/test-regression-audit.R | 6 172 files changed, 13768 insertions(+), 14290 deletions(-)
More information about OptimalBinningWoE at CRAN
Permanent link
Title: Tests for Survival Data in General Factorial Designs
Description: Implemented are three Wald-type statistic and respective
permuted versions for null hypotheses formulated in terms of cumulative hazard rate functions, medians and the concordance measure, respectively, in the general framework of survival factorial designs with possibly heterogeneous survival and/or censoring distributions, for crossed designs with an arbitrary number of factors and nested designs with up to three factors.
Ditzhaus, Dobler and Pauly (2020) <doi:10.1177/0962280220980784>
Ditzhaus, Genuneit, Janssen, Pauly (2023) <doi:10.1111/biom.13575>
Dobler and Pauly (2019) <doi:10.1177/0962280219831316>.
Author: Marc Ditzhaus [aut],
Dennis Dobler [aut],
Markus Pauly [aut],
Philipp Steinhauer [aut],
Merle Munko [aut, cre]
Maintainer: Merle Munko <mmunko@novaims.unl.pt>
Diff between GFDsurv versions 0.1.2 dated 2026-05-14 and 0.1.3 dated 2026-09-30
DESCRIPTION | 10 +- MD5 | 8 +- NEWS | 4 + R/medsanova.R | 154 ++++++++++++++++++++++++---------------- man/medsanova.Rd | 209 ++++++++++++++++++++++++++++--------------------------- 5 files changed, 214 insertions(+), 171 deletions(-)
Title: Create a Flexible Forest Plot
Description: Create a forest plot based on the layout of the data. Confidence intervals in multiple columns by groups can be done easily. The plot is built step by step with the pipe, adding the axis, the labels and a style, editing the plot, inserting/adding text, and much more.
Author: Alimu Dayimu [aut, cre]
Maintainer: Alimu Dayimu <ad938@cam.ac.uk>
Diff between forestploter versions 1.1.4 dated 2026-04-27 and 1.2.0 dated 2026-09-30
forestploter-1.1.4/forestploter/R/add_grob.r |only forestploter-1.1.4/forestploter/tests/testthat/Rplots.pdf |only forestploter-1.1.4/forestploter/tests/testthat/_snaps/addgrob/add-grob-header.new.svg |only forestploter-1.2.0/forestploter/DESCRIPTION | 18 forestploter-1.2.0/forestploter/MD5 | 150 - forestploter-1.2.0/forestploter/NAMESPACE | 9 forestploter-1.2.0/forestploter/NEWS.md | 280 +- forestploter-1.2.0/forestploter/R/add_border.R | 2 forestploter-1.2.0/forestploter/R/add_grob.R |only forestploter-1.2.0/forestploter/R/add_text.R | 222 - forestploter-1.2.0/forestploter/R/check_errors.R | 159 - forestploter-1.2.0/forestploter/R/draw_forest.R |only forestploter-1.2.0/forestploter/R/edit_plot.R | 2 forestploter-1.2.0/forestploter/R/forest.R | 1246 ++++------ forestploter-1.2.0/forestploter/R/forestploter.R | 48 forestploter-1.2.0/forestploter/R/helper.R | 108 forestploter-1.2.0/forestploter/R/insert_text.R | 314 +- forestploter-1.2.0/forestploter/R/make-arrow.R | 16 forestploter-1.2.0/forestploter/R/make-boxplot.R | 3 forestploter-1.2.0/forestploter/R/make-xaixs.R | 172 - forestploter-1.2.0/forestploter/R/makeci.R | 15 forestploter-1.2.0/forestploter/R/scale_sizes.R |only forestploter-1.2.0/forestploter/R/set_labs.R |only forestploter-1.2.0/forestploter/R/set_xaxis.R |only forestploter-1.2.0/forestploter/R/style.R |only forestploter-1.2.0/forestploter/R/theme.R | 916 +++---- forestploter-1.2.0/forestploter/R/utils.R | 2 forestploter-1.2.0/forestploter/README.md | 124 forestploter-1.2.0/forestploter/build/vignette.rds |binary forestploter-1.2.0/forestploter/inst/doc/forestploter-intro.R | 149 - forestploter-1.2.0/forestploter/inst/doc/forestploter-intro.Rmd | 940 +++---- forestploter-1.2.0/forestploter/inst/doc/forestploter-intro.html | 464 ++- forestploter-1.2.0/forestploter/inst/doc/forestploter-post.R | 78 forestploter-1.2.0/forestploter/inst/doc/forestploter-post.Rmd | 543 ++-- forestploter-1.2.0/forestploter/inst/doc/forestploter-post.html | 132 - forestploter-1.2.0/forestploter/inst/examples/boxplot-example.r | 4 forestploter-1.2.0/forestploter/inst/examples/forestplot-example.r | 93 forestploter-1.2.0/forestploter/inst/examples/layout-example.R |only forestploter-1.2.0/forestploter/inst/examples/scale-sizes-example.R |only forestploter-1.2.0/forestploter/inst/examples/set-labs-example.R |only forestploter-1.2.0/forestploter/inst/examples/set-style-example.R |only forestploter-1.2.0/forestploter/inst/examples/set-xaxis-example.R |only forestploter-1.2.0/forestploter/man/add_grob.Rd | 2 forestploter-1.2.0/forestploter/man/check_errors.Rd | 89 forestploter-1.2.0/forestploter/man/forest.Rd | 150 - forestploter-1.2.0/forestploter/man/forest_style.Rd |only forestploter-1.2.0/forestploter/man/forest_theme.Rd | 349 +- forestploter-1.2.0/forestploter/man/forestploter-package.Rd | 70 forestploter-1.2.0/forestploter/man/get_wh.Rd | 6 forestploter-1.2.0/forestploter/man/log_pretty.Rd | 58 forestploter-1.2.0/forestploter/man/make_arrow.Rd | 22 forestploter-1.2.0/forestploter/man/make_boxplot.Rd | 13 forestploter-1.2.0/forestploter/man/make_summary.Rd | 17 forestploter-1.2.0/forestploter/man/make_ticks.Rd | 18 forestploter-1.2.0/forestploter/man/make_xaxis.Rd | 34 forestploter-1.2.0/forestploter/man/make_xlim.Rd | 34 forestploter-1.2.0/forestploter/man/makeci.Rd | 17 forestploter-1.2.0/forestploter/man/print.forest_style.Rd |only forestploter-1.2.0/forestploter/man/print.forestplot.Rd | 51 forestploter-1.2.0/forestploter/man/scale_sizes.Rd |only forestploter-1.2.0/forestploter/man/set_labs.Rd |only forestploter-1.2.0/forestploter/man/set_style.Rd |only forestploter-1.2.0/forestploter/man/set_xaxis.Rd |only forestploter-1.2.0/forestploter/tests/testthat/_snaps/addgrob/add-grob-body.svg | 2 forestploter-1.2.0/forestploter/tests/testthat/_snaps/addgrob/add-grob-header.svg | 2 forestploter-1.2.0/forestploter/tests/testthat/_snaps/fit |only forestploter-1.2.0/forestploter/tests/testthat/_snaps/forest/edit-plot-with-theme.svg | 28 forestploter-1.2.0/forestploter/tests/testthat/_snaps/forest/insert-text-vector.svg | 28 forestploter-1.2.0/forestploter/tests/testthat/_snaps/forest/multiple-columns-and-multi-parameters.svg | 102 forestploter-1.2.0/forestploter/tests/testthat/_snaps/forest/multiple-columns.svg | 112 forestploter-1.2.0/forestploter/tests/testthat/_snaps/forest/multiple-groups.svg | 40 forestploter-1.2.0/forestploter/tests/testthat/_snaps/forest/simple-forest-plot-with-theme.svg | 28 forestploter-1.2.0/forestploter/tests/testthat/_snaps/forest/summary-ci.svg | 28 forestploter-1.2.0/forestploter/tests/testthat/_snaps/make-boxplot/boxplot-groups.svg | 72 forestploter-1.2.0/forestploter/tests/testthat/_snaps/make-boxplot/xlim-boxplot-single.svg | 2 forestploter-1.2.0/forestploter/tests/testthat/helper-render.R |only forestploter-1.2.0/forestploter/tests/testthat/test-addgrob.R | 190 - forestploter-1.2.0/forestploter/tests/testthat/test-check_errors.r | 189 - forestploter-1.2.0/forestploter/tests/testthat/test-fit.R |only forestploter-1.2.0/forestploter/tests/testthat/test-forest.R | 919 +++---- forestploter-1.2.0/forestploter/tests/testthat/test-make-boxplot.R | 7 forestploter-1.2.0/forestploter/tests/testthat/test-recipe.R |only forestploter-1.2.0/forestploter/tests/testthat/test-sizes.R |only forestploter-1.2.0/forestploter/tests/testthat/test-style.R |only forestploter-1.2.0/forestploter/tests/testthat/test-theme.R | 120 forestploter-1.2.0/forestploter/tests/testthat/test-utils.R | 15 forestploter-1.2.0/forestploter/tests/testthat/test-verbs.R |only forestploter-1.2.0/forestploter/vignettes/forestploter-intro.Rmd | 940 +++---- forestploter-1.2.0/forestploter/vignettes/forestploter-post.Rmd | 543 ++-- 89 files changed, 5334 insertions(+), 5172 deletions(-)
Title: Processing and Analyzing AIS Vessel Tracking Data
Description: Processes Automatic Identification
System (AIS) vessel tracking data, including travel estimation,
trajectory correction, interpolation, extraction, and summarising
vessel information. The package is designed to facilitate
reproducible analyses of maritime traffic in ecological,
environmental, and marine spatial planning applications.
For more details see <https://remip48.github.io/AISanalyze/>.
Author: Remi Pigeault [aut, cre]
Maintainer: Remi Pigeault <remi.pigeault@tiho-hannover.de>
Diff between AISanalyze versions 3.1.2 dated 2026-08-26 and 3.1.3 dated 2026-09-30
DESCRIPTION | 6 MD5 | 40 +-- NEWS.md | 14 + R/AIScorrect_speed.R | 8 R/AISextract.R | 33 -- R/AISidentify_stations_aircraft.R | 10 R/AISinterpolate.R | 8 R/AIStravel.R | 8 R/add_coordinates_meters.R | 94 ++++---- R/method_interpolation_exact_time.R | 328 ++++++++++++++-------------- README.md | 34 +- inst/doc/AISanalyze.R | 27 +- inst/doc/AISanalyze.Rmd | 409 +++++++++++++++++------------------ inst/doc/AISanalyze.html | 41 ++- man/AIScorrect_speed.Rd | 8 man/AISextract.Rd | 9 man/AISidentify_stations_aircraft.Rd | 10 man/AISinterpolate.Rd | 8 man/AIStravel.Rd | 8 tests/testthat/test-AISextract.R | 212 +++++++++--------- vignettes/AISanalyze.Rmd | 409 +++++++++++++++++------------------ 21 files changed, 893 insertions(+), 831 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-09 0.5
2021-08-14 0.4
2017-03-15 0.3-10
2015-07-07 0.3-7
2013-07-15 0.3-5
2013-03-31 0.3-4
2007-10-09 0.3-2
2006-01-01 0.3-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-02-06 3.5.4
2024-01-29 3.5.2
2023-09-28 3.4.2
2023-07-01 3.4.1
2023-06-06 3.4.0
2023-02-07 3.3.1
2023-01-25 3.3.0
2022-11-03 3.2.0
2022-08-19 3.1.4
2022-04-01 3.1.3
2021-11-03 3.0.7
2021-09-30 3.0.6
2021-07-13 3.0.4
2021-06-01 3.0.3
2020-11-26 3.0.1
2019-12-06 2.2.9
2019-06-07 2.2.4
2019-04-28 2.2.3
2019-04-25 2.2.2
2019-04-08 2.2.1
2018-06-22 2.1.2
2018-05-08 2.1.1
2018-01-05 1.9.6
2017-05-26 1.9.5
2017-03-08 1.9.4
2017-03-07 1.9.3
2017-03-06 1.9.2
2016-11-18 1.8.3
2016-11-04 1.8.2
2016-08-06 1.8.1
2016-08-05 1.8.0
2016-05-17 1.7.1
2015-11-17 1.6.1
2015-07-24 1.6.0
2014-11-11 1.5.9
2014-04-04 1.5.7
2013-08-23 1.5.4
2013-06-17 1.5.2
2013-04-05 1.4.1
2013-03-27 1.4.0
2013-03-26 1.3.8
2013-03-22 1.3.7
2012-09-05 1.3.5
2012-01-04 1.3.4
2011-11-25 1.3.3
2011-02-28 1.1.2
2011-01-24 1.1.1
2009-07-24 1.0.4
2009-01-26 1.0.3
2008-07-05 1.0.2
2008-04-24 1.0.0
2008-04-14 0.0.1
2008-04-03 0.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-06-22 1.1
Title: Topological Data Analysis: Simplicial Complex
Description: Provides an implementation of simplicial complexes for
Topological Data Analysis (TDA). The package includes functions to
compute faces, boundary operators, Betti numbers, Euler characteristic,
and to construct simplicial complexes, including Vietoris-Rips, Cech,
Alpha, Delaunay, Witness, flood, and (via a Freudenthal triangulation)
cubical complexes for grid and image data. It also implements persistent
homology, from building filtrations (via a single build_filtration()
entry point covering all of the above) to computing persistence
diagrams, persistence landscapes, and Wasserstein/bottleneck distances
between diagrams, with the aim of helping readers understand the core
concepts of computational topology.
Methods are based on standard references in persistent homology such as
Zomorodian and Carlsson (2005) <doi:10.1007/s00454-004-1146-y>,
Chazal and Michel (2021) <doi:10.3389/frai.2021.667963>, and
Otter, Porter, Tillmann, Grindrod and Harrington (2017)
<doi:10.1140/e [...truncated...]
Author: ChiChien Wang [aut, cre, trl]
Maintainer: ChiChien Wang <kennywang2003@gmail.com>
Diff between SimplicialComplex versions 0.1.2 dated 2026-08-24 and 0.2.1 dated 2026-09-30
SimplicialComplex-0.1.2/SimplicialComplex/inst/example/TestingBasic.R |only SimplicialComplex-0.1.2/SimplicialComplex/inst/example/TestingCompareDistance.R |only SimplicialComplex-0.1.2/SimplicialComplex/inst/example/TestingComplexes.R |only SimplicialComplex-0.1.2/SimplicialComplex/inst/example/TestingFlood.R |only SimplicialComplex-0.2.1/SimplicialComplex/DESCRIPTION | 11 SimplicialComplex-0.2.1/SimplicialComplex/MD5 | 68 ++-- SimplicialComplex-0.2.1/SimplicialComplex/NAMESPACE | 22 + SimplicialComplex-0.2.1/SimplicialComplex/R/ComplexUtils.R | 135 ++++--- SimplicialComplex-0.2.1/SimplicialComplex/R/Crocker.R |only SimplicialComplex-0.2.1/SimplicialComplex/R/DiscreteMorse.R |only SimplicialComplex-0.2.1/SimplicialComplex/R/FloodComplex.R | 169 ++-------- SimplicialComplex-0.2.1/SimplicialComplex/R/Homology.R |only SimplicialComplex-0.2.1/SimplicialComplex/R/Laplacian.R |only SimplicialComplex-0.2.1/SimplicialComplex/R/Persistence.R | 33 - SimplicialComplex-0.2.1/SimplicialComplex/R/PlotMorse.R |only SimplicialComplex-0.2.1/SimplicialComplex/R/VRComplex.R | 7 SimplicialComplex-0.2.1/SimplicialComplex/R/Zigzag.R |only SimplicialComplex-0.2.1/SimplicialComplex/README.md | 9 SimplicialComplex-0.2.1/SimplicialComplex/inst/example/TestBasic.R |only SimplicialComplex-0.2.1/SimplicialComplex/inst/example/TestCROCKER.R |only SimplicialComplex-0.2.1/SimplicialComplex/inst/example/TestCompareDistance.R |only SimplicialComplex-0.2.1/SimplicialComplex/inst/example/TestComplexes.R |only SimplicialComplex-0.2.1/SimplicialComplex/inst/example/TestFlood.R |only SimplicialComplex-0.2.1/SimplicialComplex/inst/example/TestLaplacian.R |only SimplicialComplex-0.2.1/SimplicialComplex/inst/example/TestMorse.R |only SimplicialComplex-0.2.1/SimplicialComplex/inst/example/TestZigzag.R |only SimplicialComplex-0.2.1/SimplicialComplex/man/build_clique_complex.Rd | 12 SimplicialComplex-0.2.1/SimplicialComplex/man/build_flood_filtration.Rd | 18 - SimplicialComplex-0.2.1/SimplicialComplex/man/circumsphere.Rd | 14 SimplicialComplex-0.2.1/SimplicialComplex/man/collect_g.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/crocker.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/dot-reduce_gf2_boundary.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/flood_complex.Rd | 6 SimplicialComplex-0.2.1/SimplicialComplex/man/flood_persistence.Rd | 16 SimplicialComplex-0.2.1/SimplicialComplex/man/gauss_jordan_eliminate.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/generate_landmarks.Rd | 19 - SimplicialComplex-0.2.1/SimplicialComplex/man/graph_laplacian.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/hodge_laplacian.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/homology.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/im.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/ker.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/lower_star_filtration.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/min_enclosing_ball.Rd | 14 SimplicialComplex-0.2.1/SimplicialComplex/man/morse_recon.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/pairwise_dist.Rd | 3 SimplicialComplex-0.2.1/SimplicialComplex/man/partial_pers_dmvf.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/persistent_laplacian.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/plot_crocker.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/plot_morse_landscape.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/plot_morse_recon.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/plot_morse_vpath.Rd |only SimplicialComplex-0.2.1/SimplicialComplex/man/simplices_to_filtration.Rd | 26 - SimplicialComplex-0.2.1/SimplicialComplex/man/zigzag_persistence.Rd |only 53 files changed, 247 insertions(+), 335 deletions(-)
More information about SimplicialComplex at CRAN
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Title: Spatial Octahedral Quantum Wave Functions
Description: Provides mathematical tools for simulating and visualizing three-dimensional octahedral quantum wave interferences and spatial resonance fields. Includes functions for MRI slice generation of fullerene structures and wave models. Computational modeling and three-dimensional visualization of fullerene and octahedral topologies are implemented within the R statistical environment, with interactive plotting powered by 'plotly'. Theoretical foundations are based on the topological frameworks of Cataldo et al. (2015) <doi:10.1002/wcms.1207>, Dresselhaus et al. (1996, ISBN:9780122218200), and Coxeter (1973, ISBN:9780486614809); the geometric principles of equations of the octahedron type are outlined in Bobenko and Suris (2012) <doi:10.1093/imrn/rnr083>. Additional structural and biological symmetry contexts are derived from Bragg (1914) <doi:10.1098/rspa.1914.0015> and Caspar and Klug (1962) <doi:10.1101/sqb.1962.027.001.005>.
Author: Katharina Brecht [aut, cre]
Maintainer: Katharina Brecht <katharina.quantumdata@proton.me>
Diff between octawave versions 0.1.0 dated 2026-09-08 and 0.1.1 dated 2026-09-30
octawave-0.1.0/octawave/R/sandbox.R |only octawave-0.1.1/octawave/DESCRIPTION | 8 - octawave-0.1.1/octawave/MD5 | 43 +++++---- octawave-0.1.1/octawave/NAMESPACE | 6 + octawave-0.1.1/octawave/NEWS.md | 9 +- octawave-0.1.1/octawave/R/prep_sync3d.R |only octawave-0.1.1/octawave/R/run_mri_simulation.R |only octawave-0.1.1/octawave/R/wave2lyze.R |only octawave-0.1.1/octawave/README.md | 45 ++++++++++ octawave-0.1.1/octawave/build/vignette.rds |binary octawave-0.1.1/octawave/inst/doc/introduction_to_octawave.R | 8 + octawave-0.1.1/octawave/inst/doc/introduction_to_octawave.Rmd | 21 ++++ octawave-0.1.1/octawave/inst/doc/introduction_to_octawave.html | 24 ++++- octawave-0.1.1/octawave/inst/doc/octawave-theory.Rmd | 16 ++- octawave-0.1.1/octawave/inst/doc/octawave-theory.html | 30 ++++-- octawave-0.1.1/octawave/inst/doc/octawave-visuals.R | 2 octawave-0.1.1/octawave/inst/doc/octawave-visuals.Rmd | 18 ++-- octawave-0.1.1/octawave/inst/doc/octawave-visuals.html | 30 ++++-- octawave-0.1.1/octawave/inst/doc/octawave-wave2lyze-interface.R |only octawave-0.1.1/octawave/inst/doc/octawave-wave2lyze-interface.Rmd |only octawave-0.1.1/octawave/inst/doc/octawave-wave2lyze-interface.html |only octawave-0.1.1/octawave/man/prep_sync3d.Rd |only octawave-0.1.1/octawave/man/run_mri_simulation.Rd |only octawave-0.1.1/octawave/man/wave2lyze.Rd |only octawave-0.1.1/octawave/vignettes/introduction_to_octawave.Rmd | 21 ++++ octawave-0.1.1/octawave/vignettes/octawave-theory.Rmd | 16 ++- octawave-0.1.1/octawave/vignettes/octawave-visuals.Rmd | 18 ++-- octawave-0.1.1/octawave/vignettes/octawave-wave2lyze-interface.Rmd |only 28 files changed, 225 insertions(+), 90 deletions(-)
Title: A Collection of Tools for Network Analysis
Description: Provides a collection of network analytic (convenience) functions which are missing in other standard packages. This includes triad census with attributes <doi:10.1016/j.socnet.2019.04.003>, core-periphery models <doi:10.1016/S0378-8733(99)00019-2>, and several graph generators. Most functions are build upon 'igraph'.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david@schochastics.net>
Diff between netUtils versions 0.8.6 dated 2026-06-12 and 1.0.0 dated 2026-09-30
netUtils-0.8.6/netUtils/R/fast_cliques.R |only netUtils-0.8.6/netUtils/man/fast_cliques.Rd |only netUtils-1.0.0/netUtils/DESCRIPTION | 12 netUtils-1.0.0/netUtils/MD5 | 89 netUtils-1.0.0/netUtils/NEWS.md | 29 netUtils-1.0.0/netUtils/R/RcppExports.R | 12 netUtils-1.0.0/netUtils/R/core_periphery.R | 9 netUtils-1.0.0/netUtils/R/dyad_census_attr.R | 82 netUtils-1.0.0/netUtils/R/graph_products.R | 96 netUtils-1.0.0/netUtils/R/graph_structures.R | 47 netUtils-1.0.0/netUtils/R/graphs.R | 49 netUtils-1.0.0/netUtils/R/lfr_benchmark.R | 84 netUtils-1.0.0/netUtils/R/print_igraph.R | 8 netUtils-1.0.0/netUtils/R/qap.R | 38 netUtils-1.0.0/netUtils/R/sample_kcores.R | 37 netUtils-1.0.0/netUtils/R/sample_pa_homophilic.R | 62 netUtils-1.0.0/netUtils/R/structural_equivalence.R | 34 netUtils-1.0.0/netUtils/R/triad_census_attr.R | 164 - netUtils-1.0.0/netUtils/R/utils.R | 17 netUtils-1.0.0/netUtils/README.md | 2 netUtils-1.0.0/netUtils/man/as_adj_list1.Rd | 2 netUtils-1.0.0/netUtils/man/bipartite_from_data_frame.Rd | 9 netUtils-1.0.0/netUtils/man/dyad_census_attr.Rd | 14 netUtils-1.0.0/netUtils/man/graph_cartesian.Rd | 4 netUtils-1.0.0/netUtils/man/graph_cor.Rd | 19 netUtils-1.0.0/netUtils/man/graph_direct.Rd | 4 netUtils-1.0.0/netUtils/man/graph_from_multi_edgelist.Rd | 2 netUtils-1.0.0/netUtils/man/graph_kpartite.Rd | 6 netUtils-1.0.0/netUtils/man/sample_lfr.Rd | 30 netUtils-1.0.0/netUtils/man/sample_pa_homophilic.Rd | 10 netUtils-1.0.0/netUtils/man/triad_census_attr.Rd | 4 netUtils-1.0.0/netUtils/src/RcppExports.cpp | 39 netUtils-1.0.0/netUtils/src/lfr.cpp | 1471 ---------- netUtils-1.0.0/netUtils/src/mse.cpp | 55 netUtils-1.0.0/netUtils/src/triad_census_col.cpp | 130 netUtils-1.0.0/netUtils/tests/testthat/test-core_periphery.R | 16 netUtils-1.0.0/netUtils/tests/testthat/test-dyad_census_attr.R | 134 netUtils-1.0.0/netUtils/tests/testthat/test-graph_products.R | 45 netUtils-1.0.0/netUtils/tests/testthat/test-graph_structures.R | 21 netUtils-1.0.0/netUtils/tests/testthat/test-graphs.R | 42 netUtils-1.0.0/netUtils/tests/testthat/test-lfr_benchmark.R | 72 netUtils-1.0.0/netUtils/tests/testthat/test-print_igraph.R | 17 netUtils-1.0.0/netUtils/tests/testthat/test-qap.R |only netUtils-1.0.0/netUtils/tests/testthat/test-sample_kcores.R | 18 netUtils-1.0.0/netUtils/tests/testthat/test-sample_pa_homophilic.R | 30 netUtils-1.0.0/netUtils/tests/testthat/test-structural_equivalence.R | 7 netUtils-1.0.0/netUtils/tests/testthat/test-triad_census_attr.R | 116 47 files changed, 1310 insertions(+), 1878 deletions(-)
Title: Deep Compositional Spatial Models
Description: Deep compositional spatial models are standard spatial covariance
models coupled with an injective warping function of the spatial
domain. The warping function is constructed through a composition
of multiple elemental injective functions in a deep-learning
framework. The package implements two cases for the univariate setting; first,
when these warping functions are known up to some weights that
need to be estimated, and, second, when the weights in each layer are random.
In the multivariate setting only the former case is available.
Estimation and inference is done using `tensorflow`, which makes use of
graphics processing units.
For more details see Zammit-Mangion et al. (2022) <doi:10.1080/01621459.2021.1887741>,
Vu et al. (2022) <doi:10.5705/ss.202020.0156>,
Vu et al. (2023) <doi:10.1016/j.spasta.2023.100742>, and
Shao et al. (2025) <doi:10.48550/arXiv.2505.12548>.
Author: Andrew Zammit-Mangion [aut],
Quan Vu [aut, cre],
Xuanjie Shao [aut]
Maintainer: Quan Vu <quanvustats@gmail.com>
Diff between deepspat versions 0.3.3 dated 2026-09-16 and 0.3.4 dated 2026-09-30
DESCRIPTION | 8 MD5 | 16 - NEWS.md | 4 R/predict.deepspat_GP.R | 1 R/predict.deepspat_MSP.R | 541 ++++++++++++++++++++--------------------- R/predict.deepspat_bivar_GP.R | 1 R/predict.deepspat_nn_GP.R | 1 R/predict.deepspat_nn_ST_GP.R | 1 R/predict.deepspat_trivar_GP.R | 1 9 files changed, 289 insertions(+), 285 deletions(-)
Title: Analysis and Visualization of Complex Networks
Description: Provides tools for the analysis, visualization, and manipulation
of dynamical, social (Saqr et al. (2024) <doi:10.1007/978-3-031-54464-4_10>) and
complex networks (Saqr et al. (2025) <doi:10.1145/3706468.3706513>). The package
supports multiple network formats and offers flexible tools for heterogeneous,
multi-layer, and hierarchical network analysis with simple syntax and
extensive toolset.
Author: Mohammed Saqr [aut, cph],
Sonsoles Lopez-Pernas [aut, cre, cph]
Maintainer: Sonsoles Lopez-Pernas <sonsoles.lopez@uef.fi>
Diff between cograph versions 2.4.4 dated 2026-07-10 and 2.7.2 dated 2026-09-30
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cograph-2.7.2/cograph/man/group_centrality.Rd | 12 cograph-2.7.2/cograph/man/hai_datasets.Rd | 17 cograph-2.7.2/cograph/man/invert_weights.Rd |only cograph-2.7.2/cograph/man/is_tna_network.Rd | 2 cograph-2.7.2/cograph/man/k_shortest_paths.Rd | 6 cograph-2.7.2/cograph/man/layer_similarity.Rd | 18 cograph-2.7.2/cograph/man/layer_similarity_matrix.Rd | 11 cograph-2.7.2/cograph/man/layout_target.Rd | 3 cograph-2.7.2/cograph/man/list_centralities.Rd |only cograph-2.7.2/cograph/man/mcml.Rd | 2 cograph-2.7.2/cograph/man/motif_census.Rd | 32 cograph-2.7.2/cograph/man/motifs.Rd | 90 cograph-2.7.2/cograph/man/mutate_edges.Rd |only cograph-2.7.2/cograph/man/mutate_nodes.Rd |only cograph-2.7.2/cograph/man/network_bridges.Rd | 5 cograph-2.7.2/cograph/man/network_clique_size.Rd | 10 cograph-2.7.2/cograph/man/network_cut_vertices.Rd | 5 cograph-2.7.2/cograph/man/network_girth.Rd | 5 cograph-2.7.2/cograph/man/network_global_efficiency.Rd | 10 cograph-2.7.2/cograph/man/network_local_efficiency.Rd | 20 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|only cograph-2.7.2/cograph/tests/testthat/test-integer-weight-labels.R | 3 cograph-2.7.2/cograph/tests/testthat/test-integration.R | 3 cograph-2.7.2/cograph/tests/testthat/test-motifs-adversarial-fixes.R |only cograph-2.7.2/cograph/tests/testthat/test-motifs-api.R | 211 cograph-2.7.2/cograph/tests/testthat/test-motifs-as-data-frame.R |only cograph-2.7.2/cograph/tests/testthat/test-motifs-triad-index-cache.R |only cograph-2.7.2/cograph/tests/testthat/test-motifs-triad-patterns.R |only cograph-2.7.2/cograph/tests/testthat/test-multi-step-styling-args.R |only cograph-2.7.2/cograph/tests/testthat/test-network-summary.R | 48 cograph-2.7.2/cograph/tests/testthat/test-networks-manifest.R |only cograph-2.7.2/cograph/tests/testthat/test-oob-squish.R |only cograph-2.7.2/cograph/tests/testthat/test-panel-layout.R | 87 cograph-2.7.2/cograph/tests/testthat/test-plot-compare.R | 10 cograph-2.7.2/cograph/tests/testthat/test-plot-htna-legend.R |only 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cograph-2.7.2/cograph/tests/testthat/test-visual-scale.R | 3 cograph-2.7.2/cograph/tests/testthat/test-wrangle-edit.R |only cograph-2.7.2/cograph/tests/testthat/test-wrangle-signed.R |only cograph-2.7.2/cograph/tests/testthat/test-wrangle-structure.R |only cograph-2.7.2/cograph/tests/testthat/test-wrangle-vocabulary.R |only cograph-2.7.2/cograph/tests/testthat/test-wrangle-weights.R |only cograph-2.7.2/cograph/tests/testthat/test-wrangling-invariants.R |only cograph-2.7.2/cograph/vignettes/centrality-catalogue.Rmd | 1062 +++- cograph-2.7.2/cograph/vignettes/introduction.Rmd | 444 +- 635 files changed, 16740 insertions(+), 7900 deletions(-)
Title: Standard TLGs for Clinical Trials Reporting
Description: Provide standard tables, listings, and graphs (TLGs)
libraries used in clinical trials. This package implements a structure
to reformat the data with 'dunlin', create reporting tables using
'rtables' and 'tern' with standardized input arguments to enable quick
generation of standard outputs. In addition, it also provides
comprehensive data checks and script generation functionality.
Author: Liming Li [aut] ,
Benoit Falquet [aut] ,
Xiaoli Duan [aut],
Adrian Waddell [ctb],
Chenkai Lv [ctb],
Pawel Rucki [ctb],
Tim Barnett [ctb],
Tian Fang [ctb],
Joe Zhu [cre] ,
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between chevron versions 0.2.14 dated 2026-09-16 and 0.2.15 dated 2026-09-30
DESCRIPTION | 8 MD5 | 14 NAMESPACE | 612 +++++++++++++++++++++---------------------- NEWS.md | 4 inst/doc/chevron.html | 2 tests/testthat/test-fstg01.R | 92 +++--- tests/testthat/test-fstg02.R | 130 ++++----- tests/testthat/test-rspt01.R | 1 8 files changed, 434 insertions(+), 429 deletions(-)
Title: Text to Speech Conversion
Description: Converts text into speech using various text-to-speech (TTS) engines and provides an unified interface for accessing their functionality.
With this package, users can easily generate audio files of spoken words, phrases, or sentences from plain text data. The package supports multiple TTS engines,
including Google's 'Cloud Text-to-Speech API', 'Amazon Polly', Microsoft's 'Cognitive Services Text to Speech REST API', the 'Speechify Text-to-Speech API', and a free TTS engine called 'Coqui TTS'.
Author: Howard Baek [aut] ,
John Muschelli [aut, cre]
Maintainer: John Muschelli <muschellij2@gmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2023-07-19
Diff between text2speech versions 1.0.0 dated 2023-07-19 and 1.2.0 dated 2026-09-30
DESCRIPTION | 32 ++---- MD5 | 51 +++++---- NAMESPACE | 3 NEWS.md | 10 + R/aaa_utils.R | 56 ++++++---- R/pcm_to_wav.R | 4 R/tts.R | 180 ++++++++++++++++++++++++----------- R/tts_auth.R | 70 ++++++++++++- R/tts_speak_engine.R | 2 R/tts_voices.R | 71 ++++++++++++- README.md | 88 +++++++++++------ build/vignette.rds |binary inst/doc/coqui-tts.R | 38 +++---- inst/doc/coqui-tts.Rmd | 2 inst/doc/coqui-tts.html | 41 ++++--- man/pcm_to_wav.Rd | 4 man/set_coqui_path.Rd | 14 +- man/text2speech-package.Rd | 7 - man/tts.Rd | 41 ++++++- man/tts_auth.Rd | 24 +++- man/tts_default_voice.Rd | 4 man/tts_speak_engine.Rd | 2 man/tts_voices.Rd | 23 +++- tests/testthat/test-tts-split-text.R |only tests/testthat/test-tts.R | 13 +- tests/testthat/test-tts_voices.R | 6 - vignettes/coqui-tts.Rmd | 2 27 files changed, 542 insertions(+), 246 deletions(-)
Title: Semi-Supervised Learning with Mixed Missingness in Finite
Mixture Models
Description: Semi-supervised Gaussian finite mixture models for partially labelled data
under complete-case, missing completely at random (MCAR), entropy-dependent missing
at random (MAR), and mixed MCAR/MAR label-missingness formulations. For the mixed
formulation, the source of a missing label may be observed or latent. The package
supports equal and component-specific covariance matrices, model fitting, simulation,
initialization, prediction, classification performance assessment, and entropy-based
diagnostics. A semi-synthetic Blood Transfusion data set is included to illustrate the
applied workflow.
Author: Geoffrey J. McLachlan [aut] ,
Jinran Wu [aut, cre]
Maintainer: Jinran Wu <jinran.wu@uq.edu.au>
Diff between SSLfmm versions 0.2.1 dated 2026-09-07 and 0.2.2 dated 2026-09-30
SSLfmm-0.2.1/SSLfmm/data/blood_transfusion.csv |only SSLfmm-0.2.2/SSLfmm/DESCRIPTION | 19 ++++++++------ SSLfmm-0.2.2/SSLfmm/MD5 | 14 +++++++--- SSLfmm-0.2.2/SSLfmm/NEWS.md |only SSLfmm-0.2.2/SSLfmm/README.md | 15 ++++++++--- SSLfmm-0.2.2/SSLfmm/build |only SSLfmm-0.2.2/SSLfmm/data/blood_transfusion.csv.gz |only SSLfmm-0.2.2/SSLfmm/inst |only SSLfmm-0.2.2/SSLfmm/tests/testthat/test-output-contract.R | 4 +- SSLfmm-0.2.2/SSLfmm/vignettes |only 10 files changed, 35 insertions(+), 17 deletions(-)
Title: Prepare for Production of Seasonal Adjustment with 'JDemetra+'
Description: A comprehensive tool for setting up seasonal data pipelines
using 'JDemetra+' (version 3) and 'rjdverse'. This includes setting up
a new working environment, creating and selecting calendar regressors,
managing specifications (trading-days regressors and outliers) at the
workspace level, making a workspace usable by the 'cruncher', removing
insignificant outliers, and comparing workspaces.
Author: Tanguy Barthelemy [aut, cre, art, cph],
Eulalie Delaune [aut]
Maintainer: Tanguy Barthelemy <timeserieswithjdemetraandr@gmail.com>
This is a re-admission after prior archival of version 1.1.1 dated 2026-07-17
Diff between rjd3production versions 1.1.1 dated 2026-07-17 and 1.2.0 dated 2026-09-30
rjd3production-1.1.1/rjd3production/inst/IMPORTLIST |only rjd3production-1.1.1/rjd3production/inst/autoimport_cache.rds |only rjd3production-1.2.0/rjd3production/DESCRIPTION | 26 rjd3production-1.2.0/rjd3production/MD5 | 146 rjd3production-1.2.0/rjd3production/NAMESPACE | 285 rjd3production-1.2.0/rjd3production/NEWS.md | 31 rjd3production-1.2.0/rjd3production/R/assign.R | 388 rjd3production-1.2.0/rjd3production/R/compare.R | 475 rjd3production-1.2.0/rjd3production/R/create.R | 670 rjd3production-1.2.0/rjd3production/R/deprecated.R | 83 rjd3production-1.2.0/rjd3production/R/env.R | 243 rjd3production-1.2.0/rjd3production/R/extraction.R | 417 rjd3production-1.2.0/rjd3production/R/io.R | 276 rjd3production-1.2.0/rjd3production/R/modify-sao.R | 475 rjd3production-1.2.0/rjd3production/R/modify-specification.R | 561 rjd3production-1.2.0/rjd3production/R/random-spec.R | 962 rjd3production-1.2.0/rjd3production/R/regression-tools.R | 269 rjd3production-1.2.0/rjd3production/R/retrieve.R | 412 rjd3production-1.2.0/rjd3production/R/rjd3production-package.R | 14 rjd3production-1.2.0/rjd3production/R/select.R | 962 rjd3production-1.2.0/rjd3production/R/translate-spec.R | 1093 rjd3production-1.2.0/rjd3production/R/zzz.R |only rjd3production-1.2.0/rjd3production/README.md | 478 rjd3production-1.2.0/rjd3production/build/vignette.rds |binary rjd3production-1.2.0/rjd3production/inst/WORDLIST |only rjd3production-1.2.0/rjd3production/inst/doc/process-en.R | 232 rjd3production-1.2.0/rjd3production/inst/doc/process-en.html | 711 rjd3production-1.2.0/rjd3production/inst/doc/process-en.qmd | 361 rjd3production-1.2.0/rjd3production/inst/doc/process-fr.R | 232 rjd3production-1.2.0/rjd3production/inst/doc/process-fr.html | 709 rjd3production-1.2.0/rjd3production/inst/doc/process-fr.qmd | 360 rjd3production-1.2.0/rjd3production/inst/doc/td-selection-en.R | 196 rjd3production-1.2.0/rjd3production/inst/doc/td-selection-en.html | 771 rjd3production-1.2.0/rjd3production/inst/doc/td-selection-en.qmd | 276 rjd3production-1.2.0/rjd3production/inst/doc/td-selection-fr.R | 196 rjd3production-1.2.0/rjd3production/inst/doc/td-selection-fr.html | 771 rjd3production-1.2.0/rjd3production/inst/doc/td-selection-fr.qmd | 276 rjd3production-1.2.0/rjd3production/inst/workspaces/ws_example.xml | 130 rjd3production-1.2.0/rjd3production/inst/workspaces/ws_example/Calendars/Calendars.xml | 126 rjd3production-1.2.0/rjd3production/inst/workspaces/ws_example/SAProcessing/SAProcessing-1.xml |17750 +++++----- rjd3production-1.2.0/rjd3production/inst/workspaces/ws_example/Variables/Vars-1.xml | 22 rjd3production-1.2.0/rjd3production/inst/workspaces/ws_example/Variables/Vars-10.xml | 102 rjd3production-1.2.0/rjd3production/inst/workspaces/ws_example/Variables/Vars-11.xml | 118 rjd3production-1.2.0/rjd3production/inst/workspaces/ws_example/Variables/Vars-2.xml | 38 rjd3production-1.2.0/rjd3production/inst/workspaces/ws_example/Variables/Vars-3.xml | 54 rjd3production-1.2.0/rjd3production/inst/workspaces/ws_example/Variables/Vars-4.xml | 86 rjd3production-1.2.0/rjd3production/inst/workspaces/ws_example/Variables/Vars-5.xml | 102 rjd3production-1.2.0/rjd3production/inst/workspaces/ws_example/Variables/Vars-6.xml | 22 rjd3production-1.2.0/rjd3production/inst/workspaces/ws_example/Variables/Vars-7.xml | 38 rjd3production-1.2.0/rjd3production/inst/workspaces/ws_example/Variables/Vars-8.xml | 54 rjd3production-1.2.0/rjd3production/inst/workspaces/ws_example/Variables/Vars-9.xml | 70 rjd3production-1.2.0/rjd3production/man/add_raw_data_path.Rd | 102 rjd3production-1.2.0/rjd3production/man/compare.Rd | 104 rjd3production-1.2.0/rjd3production/man/create_specs_set.Rd | 80 rjd3production-1.2.0/rjd3production/man/create_ws_from_data.Rd | 91 rjd3production-1.2.0/rjd3production/man/deprecated-rjd3production.Rd | 77 rjd3production-1.2.0/rjd3production/man/get_jsai_by_name.Rd | 76 rjd3production-1.2.0/rjd3production/man/get_named_variables.Rd | 46 rjd3production-1.2.0/rjd3production/man/get_series.Rd | 118 rjd3production-1.2.0/rjd3production/man/init_env.Rd | 66 rjd3production-1.2.0/rjd3production/man/insee_modelling.Rd | 202 rjd3production-1.2.0/rjd3production/man/make_ws_crunchable.Rd | 87 rjd3production-1.2.0/rjd3production/man/random-spec.Rd | 62 rjd3production-1.2.0/rjd3production/man/regression_tools.Rd | 372 rjd3production-1.2.0/rjd3production/man/remove_non_significant_outliers.Rd | 149 rjd3production-1.2.0/rjd3production/man/rjd3production-package.Rd | 57 rjd3production-1.2.0/rjd3production/man/run_app.Rd | 100 rjd3production-1.2.0/rjd3production/man/select_td.Rd | 134 rjd3production-1.2.0/rjd3production/man/set_minimum_span.Rd | 104 rjd3production-1.2.0/rjd3production/man/translate-spec.Rd | 104 rjd3production-1.2.0/rjd3production/tests/testthat.R | 24 rjd3production-1.2.0/rjd3production/tests/testthat/test-translation.R | 573 rjd3production-1.2.0/rjd3production/vignettes/process-en.qmd | 361 rjd3production-1.2.0/rjd3production/vignettes/process-fr.qmd | 360 rjd3production-1.2.0/rjd3production/vignettes/td-selection-en.qmd | 276 rjd3production-1.2.0/rjd3production/vignettes/td-selection-fr.qmd | 276 76 files changed, 18472 insertions(+), 17598 deletions(-)
More information about rjd3production at CRAN
Permanent link
Title: Filter and Query Data Frames in 'shiny' Using an LLM Chat
Interface
Description: Adds an LLM-powered chatbot to your 'shiny' app, that can
turn your users' natural language questions into 'SQL' queries that
run against your data, and return the result as a reactive data frame.
Use it to drive reactive calculations, visualizations, downloads, and
more.
Author: Garrick Aden-Buie [aut, cre] ,
Joe Cheng [aut, ccp],
Carson Sievert [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Garrick Aden-Buie <garrick@posit.co>
This is a re-admission after prior archival of version 0.4.0 dated 2026-09-13
Diff between querychat versions 0.4.0 dated 2026-09-13 and 0.4.1 dated 2026-09-30
DESCRIPTION | 6 ++-- MD5 | 14 +++++----- NEWS.md | 6 ++++ R/querychat-package.R | 5 --- build/vignette.rds |binary tests/testthat/helper-fixtures.R | 37 ++++++++++++++++++++++++---- tests/testthat/test-QueryChat.R | 17 ++++++++++++ tests/testthat/test-QueryChatSystemPrompt.R | 10 +++++++ 8 files changed, 77 insertions(+), 18 deletions(-)
Title: Unicode and Punycode Domain Name Processing
Description: High-performance Unicode and Punycode processing for
internationalized domain names. The 'puny_encode()' / 'puny_decode()'
helpers are a low-level, RFC 3492 compliant Punycode codec for domain
labels (the 'xn--' ASCII-Compatible Encoding of RFC 5890/5891); they
perform the raw transform plus letter-digit-hyphen checks and do not
apply Unicode IDNA normalization. 'host_normalize()' is the Unicode
Technical Standard #46 host-normalization entry point, mapping a host
name to a canonical lowercase ASCII comparison form (non-transitional
profile, pinned default Unicode version, selectable per call from the
set the build ships). Aimed at host normalization and data analysis
workflows. Used as the Punycode and IDNA engine by the 'pslr' and
'rurl' packages.
Author: Bart Turczynski [aut, cre]
Maintainer: Bart Turczynski <bartek@turczynski.pl>
Diff between punycoder versions 1.2.1 dated 2026-07-19 and 1.3.0 dated 2026-09-30
punycoder-1.2.1/punycoder/R/url-utils.R |only punycoder-1.2.1/punycoder/inst/testdata/IdnaTestV2.txt |only punycoder-1.2.1/punycoder/man/parse_url.Rd |only punycoder-1.2.1/punycoder/man/print.punycoder_parsed_url.Rd |only punycoder-1.2.1/punycoder/man/url_decode.Rd |only punycoder-1.2.1/punycoder/man/url_encode.Rd |only punycoder-1.2.1/punycoder/src/punycoder_url.cpp |only punycoder-1.2.1/punycoder/tests/testthat/test-urls.R |only punycoder-1.3.0/punycoder/DESCRIPTION | 23 punycoder-1.3.0/punycoder/MD5 | 127 punycoder-1.3.0/punycoder/NAMESPACE | 9 punycoder-1.3.0/punycoder/NEWS.md | 437 punycoder-1.3.0/punycoder/R/RcppExports.R | 20 punycoder-1.3.0/punycoder/R/helpers.R | 126 punycoder-1.3.0/punycoder/R/normalize.R | 107 punycoder-1.3.0/punycoder/R/punycoder-package.R | 9 punycoder-1.3.0/punycoder/R/punycoder.R | 14 punycoder-1.3.0/punycoder/R/results.R | 174 punycoder-1.3.0/punycoder/R/validators.R | 32 punycoder-1.3.0/punycoder/README.md | 153 punycoder-1.3.0/punycoder/inst/WORDLIST | 56 punycoder-1.3.0/punycoder/inst/doc/punycoder-intro.R | 67 punycoder-1.3.0/punycoder/inst/doc/punycoder-intro.Rmd | 108 punycoder-1.3.0/punycoder/inst/doc/punycoder-intro.html | 258 punycoder-1.3.0/punycoder/inst/testdata/IdnaTestV2-16.0.0.txt |only punycoder-1.3.0/punycoder/inst/testdata/IdnaTestV2-17.0.0.txt |only punycoder-1.3.0/punycoder/man/host_normalize.Rd | 36 punycoder-1.3.0/punycoder/man/is_idn.Rd | 8 punycoder-1.3.0/punycoder/man/is_punycode.Rd | 6 punycoder-1.3.0/punycoder/man/normalization_profile_info.Rd | 18 punycoder-1.3.0/punycoder/man/print.punycoder_validation.Rd | 8 punycoder-1.3.0/punycoder/man/print.punycoder_validation_summary.Rd |only punycoder-1.3.0/punycoder/man/puny_decode.Rd | 5 punycoder-1.3.0/punycoder/man/puny_encode.Rd | 5 punycoder-1.3.0/punycoder/man/punycoder-package.Rd | 17 punycoder-1.3.0/punycoder/man/summary.punycoder_validation.Rd |only punycoder-1.3.0/punycoder/man/unicode_versions.Rd |only punycoder-1.3.0/punycoder/man/validate_domain.Rd | 2 punycoder-1.3.0/punycoder/src/Makevars.in | 2 punycoder-1.3.0/punycoder/src/Makevars.win | 2 punycoder-1.3.0/punycoder/src/RcppExports.cpp | 53 punycoder-1.3.0/punycoder/src/exports.cpp | 173 punycoder-1.3.0/punycoder/src/init.c | 30 punycoder-1.3.0/punycoder/src/punycoder_algorithm.cpp | 20 punycoder-1.3.0/punycoder/src/punycoder_core.h | 36 punycoder-1.3.0/punycoder/src/punycoder_domain.cpp | 18 punycoder-1.3.0/punycoder/src/punycoder_errors.cpp | 28 punycoder-1.3.0/punycoder/src/punycoder_nfc.cpp | 227 punycoder-1.3.0/punycoder/src/punycoder_nfc.h | 15 punycoder-1.3.0/punycoder/src/punycoder_normalize.cpp | 700 punycoder-1.3.0/punycoder/src/punycoder_normalize.h | 43 punycoder-1.3.0/punycoder/src/punycoder_service.cpp | 37 punycoder-1.3.0/punycoder/src/punycoder_unicode_version.cpp |only punycoder-1.3.0/punycoder/src/punycoder_unicode_version.h |only punycoder-1.3.0/punycoder/src/punycoder_utf8.cpp | 7 punycoder-1.3.0/punycoder/src/unicode_tables_16_0_0.cpp |12751 ++++++---- punycoder-1.3.0/punycoder/src/unicode_tables_16_0_0.h | 69 punycoder-1.3.0/punycoder/src/unicode_tables_17_0_0.cpp |only punycoder-1.3.0/punycoder/src/unicode_tables_17_0_0.h |only punycoder-1.3.0/punycoder/src/unicode_tables_registry.h |only punycoder-1.3.0/punycoder/tests/testthat/helper-idna.R | 22 punycoder-1.3.0/punycoder/tests/testthat/helper-security.R |only punycoder-1.3.0/punycoder/tests/testthat/helper-validation.R | 38 punycoder-1.3.0/punycoder/tests/testthat/test-backends.R | 36 punycoder-1.3.0/punycoder/tests/testthat/test-contracts.R | 114 punycoder-1.3.0/punycoder/tests/testthat/test-encoding.R | 47 punycoder-1.3.0/punycoder/tests/testthat/test-idna-conformance.R | 183 punycoder-1.3.0/punycoder/tests/testthat/test-normalize.R | 164 punycoder-1.3.0/punycoder/tests/testthat/test-performance.R | 179 punycoder-1.3.0/punycoder/tests/testthat/test-security.R | 234 punycoder-1.3.0/punycoder/tests/testthat/test-spelling-aliases.R |only punycoder-1.3.0/punycoder/tests/testthat/test-unicode-versions.R |only punycoder-1.3.0/punycoder/tests/testthat/test-unicode.R | 62 punycoder-1.3.0/punycoder/tests/testthat/test-validators.R | 144 punycoder-1.3.0/punycoder/vignettes/punycoder-intro.Rmd | 108 75 files changed, 11464 insertions(+), 5903 deletions(-)
Title: Benchmark for Publication Bias Correction Methods
Description: Implements a unified interface for benchmarking meta-analytic
publication bias correction methods through simulation studies (see
Bartoš et al., 2025, <doi:10.48550/arXiv.2510.19489>). It provides
1) predefined data-generating mechanisms from the literature, 2) functions
for running meta-analytic methods on simulated data, 3) pre-simulated
datasets and pre-computed results for reproducible benchmarks, 4) tools for
visualizing and comparing method performance.
Author: Frantisek Bartos [aut, cre] ,
Samuel Pawel [aut] ,
Bjoern S. Siepe [aut] ,
Petr Čala [aut]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>
Diff between PublicationBiasBenchmark versions 0.2.1 dated 2026-05-23 and 0.3.0 dated 2026-09-30
DESCRIPTION | 17 ++-- MD5 | 70 ++++++++++-------- NAMESPACE | 9 ++ NEWS.md | 11 ++ R/download.R | 59 ++++++++------- R/measures_compute.R | 72 ++++++++++++++++-- R/measures_pairwise.R | 6 + R/method-MAN.R |only R/method-MMPH.R |only R/method-RTMA.R |only R/method-fit_limit.R |only R/method.R | 41 +++++++++- R/tools.R | 4 - README.md | 47 ++++++++---- build/partial.rdb |binary build/vignette.rds |binary inst/REFERENCES.bib | 33 ++++++++ inst/doc/Computing_Method_Measures.Rmd | 2 inst/doc/Computing_Method_Measures.html | 5 + inst/doc/Computing_Method_Results.R | 6 + inst/doc/Computing_Method_Results.Rmd | 6 + inst/doc/Computing_Method_Results.html | 122 ++++++++++++++++---------------- man/compare_measures.Rd | 3 man/compare_single_measure.Rd | 3 man/compute_measures.Rd | 8 +- man/compute_single_measure.Rd | 8 +- man/create_empty_result.Rd | 42 +++++------ man/measure.Rd | 40 +++++----- man/measure_mcse.Rd | 40 +++++----- man/method.MAN.Rd |only man/method.MMPH.Rd |only man/method.RTMA.Rd |only man/method_extra_columns.Rd | 86 +++++++++++----------- man/method_settings.Rd | 58 +++++++-------- man/run_method.Rd | 36 +++++++++ man/validate_dgm_setting.Rd | 72 +++++++++--------- tests/testthat/test-downloads.R |only tests/testthat/test-methods.R | 82 +++++++++++++++++++++ vignettes/Computing_Method_Measures.Rmd | 2 vignettes/Computing_Method_Results.Rmd | 6 + 40 files changed, 661 insertions(+), 335 deletions(-)
More information about PublicationBiasBenchmark at CRAN
Permanent link
Title: Procedures for Psychological, Psychometric, and Personality
Research
Description: A general purpose toolbox developed originally for personality, psychometric theory and experimental psychology. Functions are primarily for multivariate analysis and scale construction using factor analysis, principal component analysis, cluster analysis and reliability analysis, although others provide basic descriptive statistics. Item Response Theory is done using factor analysis of tetrachoric and polychoric correlations. Functions for analyzing data at multiple levels include within and between group statistics, including correlations and factor analysis. Validation and cross validation of scales developed using basic machine learning algorithms are provided, as are functions for simulating and testing particular item and test structures. Several functions serve as a useful front end for structural equation modeling. Graphical displays of path diagrams, including mediation models, factor analysis and structural equation models are created using basic graphics. Some of the fu [...truncated...]
Author: William Revelle [aut, cre]
Maintainer: William Revelle <revelle@northwestern.edu>
Diff between psych versions 2.6.5 dated 2026-05-15 and 2.6.9 dated 2026-09-30
psych-2.6.5/psych/R/densityBy.r |only psych-2.6.9/psych/DESCRIPTION | 8 +- psych-2.6.9/psych/MD5 | 72 ++++++++++++------------ psych-2.6.9/psych/NAMESPACE | 2 psych-2.6.9/psych/R/Pinv.R | 23 ++++++- psych-2.6.9/psych/R/anova.psych.R | 2 psych-2.6.9/psych/R/bassAckward.R | 4 - psych-2.6.9/psych/R/bestScale.R | 8 +- psych-2.6.9/psych/R/cohen.d.R | 26 +++++++- psych-2.6.9/psych/R/cta.R | 2 psych-2.6.9/psych/R/densityBy.R |only psych-2.6.9/psych/R/fa.R | 2 psych-2.6.9/psych/R/factor.congruence.R | 6 +- psych-2.6.9/psych/R/lmCor.R | 29 +++++---- psych-2.6.9/psych/R/misc.R | 14 +++- psych-2.6.9/psych/R/mixed.cor.R | 21 +++++-- psych-2.6.9/psych/R/polychoric.R | 2 psych-2.6.9/psych/R/principal.R | 2 psych-2.6.9/psych/R/print.psych.R | 10 ++- psych-2.6.9/psych/R/statsBy.r | 7 ++ psych-2.6.9/psych/R/tetrachor.R | 8 +- psych-2.6.9/psych/build/partial.rdb |binary psych-2.6.9/psych/build/vignette.rds |binary psych-2.6.9/psych/inst/CITATION | 2 psych-2.6.9/psych/inst/NEWS.Rd | 66 +++++++++++++++++----- psych-2.6.9/psych/inst/doc/scoring.pdf |binary psych-2.6.9/psych/man/Pinv.Rd | 47 ++++++++++----- psych-2.6.9/psych/man/best.scales.Rd | 5 + psych-2.6.9/psych/man/cohen.d.Rd | 21 +++++++ psych-2.6.9/psych/man/cta.Rd | 19 ++++-- psych-2.6.9/psych/man/densityBy.Rd | 7 ++ psych-2.6.9/psych/man/fa.Rd | 6 +- psych-2.6.9/psych/man/lmCor.Rd | 10 +-- psych-2.6.9/psych/man/mediate.Rd | 22 +++---- psych-2.6.9/psych/man/mixed.cor.Rd | 2 psych-2.6.9/psych/man/multilevel.reliability.Rd | 7 +- psych-2.6.9/psych/man/statsBy.Rd | 5 + psych-2.6.9/psych/man/tetrachor.Rd | 4 - 38 files changed, 314 insertions(+), 157 deletions(-)
Title: Policy Learning
Description: Package for learning and evaluating (subgroup) policies via doubly robust loss functions. Policy learning methods include doubly robust blip/conditional average treatment effect learning and sequential policy tree learning. Methods for (subgroup) policy evaluation include doubly robust cross-fitting and online estimation/sequential validation. See Nordland and Holst (2026) <doi:10.18637/jss.v116.i04> for documentation and references.
Author: Andreas Nordland [aut, cre],
Klaus Holst [aut]
Maintainer: Andreas Nordland <andreasnordland@gmail.com>
Diff between polle versions 1.6.4 dated 2026-05-17 and 1.6.5 dated 2026-09-30
polle-1.6.4/polle/tests/testthat/test-q_sl.R |only polle-1.6.5/polle/DESCRIPTION | 18 polle-1.6.5/polle/MD5 | 108 polle-1.6.5/polle/NAMESPACE | 74 polle-1.6.5/polle/NEWS.md | 14 polle-1.6.5/polle/R/Q_function.R | 22 polle-1.6.5/polle/R/blip.R | 51 polle-1.6.5/polle/R/c_function.R | 4 polle-1.6.5/polle/R/drql.R | 4 polle-1.6.5/polle/R/estimate_target.R | 194 + polle-1.6.5/polle/R/fit_functions.R | 2 polle-1.6.5/polle/R/g_function.R | 4 polle-1.6.5/polle/R/g_models.R | 151 - polle-1.6.5/polle/R/m_function.R | 3 polle-1.6.5/polle/R/owl.R | 38 polle-1.6.5/polle/R/policy_data.R | 3 polle-1.6.5/polle/R/policy_def.R | 4 polle-1.6.5/polle/R/policy_eval.R | 278 +- polle-1.6.5/polle/R/policy_eval_functions.R | 224 +- polle-1.6.5/polle/R/policy_eval_online.R | 52 polle-1.6.5/polle/R/policy_learn.R | 29 polle-1.6.5/polle/R/polle-package.R | 27 polle-1.6.5/polle/R/ptl.R | 38 polle-1.6.5/polle/R/q_models.R | 187 - polle-1.6.5/polle/R/rql.R | 2 polle-1.6.5/polle/R/sl_models.R | 72 polle-1.6.5/polle/inst/doc/optimal_subgroup.html | 14 polle-1.6.5/polle/inst/doc/policy_data.html | 55 polle-1.6.5/polle/inst/doc/policy_eval.R | 4 polle-1.6.5/polle/inst/doc/policy_eval.Rmd | 6 polle-1.6.5/polle/inst/doc/policy_eval.html | 72 polle-1.6.5/polle/inst/doc/policy_learn.html | 58 polle-1.6.5/polle/man/control_blip.Rd | 2 polle-1.6.5/polle/man/control_drql.Rd | 2 polle-1.6.5/polle/man/control_owl.Rd | 21 polle-1.6.5/polle/man/fit_g_functions.Rd | 2 polle-1.6.5/polle/man/g_model.Rd | 31 polle-1.6.5/polle/man/policy_data.Rd | 3 polle-1.6.5/polle/man/policy_eval.Rd | 88 polle-1.6.5/polle/man/policy_eval_online.Rd | 7 polle-1.6.5/polle/man/policy_learn.Rd | 9 polle-1.6.5/polle/man/polle-package.Rd | 1 polle-1.6.5/polle/man/q_model.Rd | 38 polle-1.6.5/polle/man/reexports.Rd | 5 polle-1.6.5/polle/tests/testthat/test-Q-function.R |only polle-1.6.5/polle/tests/testthat/test-g_models.R | 89 polle-1.6.5/polle/tests/testthat/test-policy_eval-censoring.R | 117 - polle-1.6.5/polle/tests/testthat/test-policy_eval-subgroup.R | 1112 +++++++++- polle-1.6.5/polle/tests/testthat/test-policy_eval.R | 471 +++- polle-1.6.5/polle/tests/testthat/test-policy_eval_online.R | 2 polle-1.6.5/polle/tests/testthat/test-policy_learn-blip.R | 26 polle-1.6.5/polle/tests/testthat/test-policy_learn-drql.R | 4 polle-1.6.5/polle/tests/testthat/test-policy_learn-owl.R | 58 polle-1.6.5/polle/tests/testthat/test-policy_learn.R | 2 polle-1.6.5/polle/tests/testthat/test-q_models.R | 105 polle-1.6.5/polle/vignettes/policy_eval.Rmd | 6 56 files changed, 2841 insertions(+), 1172 deletions(-)
Title: Client for the Poverty and Inequality Platform ('PIP') API
Description: An interface to compute poverty and inequality
indicators for more than 160 countries and regions from the World
Bank's database of household surveys, through the
Poverty and Inequality Portal (PIP).
Author: Tony Fujs [aut],
Aleksander Eilertsen [aut],
Ronak Shah [aut],
R.Andres Castaneda [aut, cre],
Giorgia Cecchinato [aut],
World Bank [cph]
Maintainer: R.Andres Castaneda <acastanedaa@worldbank.org>
This is a re-admission after prior archival of version 1.4.0 dated 2025-12-22
Diff between pipr versions 1.4.0 dated 2025-12-22 and 1.5.0 dated 2026-09-30
DESCRIPTION | 10 LICENSE | 4 MD5 | 106 +-- NAMESPACE | 34 - NEWS.md | 17 R/aaa.R | 288 ++++---- R/build_request.R | 176 ++--- R/data.R | 72 +- R/display_aux.R | 215 +++--- R/get_aux.R | 894 ++++++++++++++------------- R/get_cp.R | 152 ++-- R/get_cp_ki.R | 249 +++---- R/get_gd.R | 350 +++++----- R/get_stats.R | 555 ++++++++--------- R/other.R | 102 +-- R/utils.R | 1193 ++++++++++++++++++++++++------------- R/zzz.R | 46 - README.md | 192 +---- man/args_to_string.Rd | 40 - man/build_request.Rd | 46 - man/build_request_old.Rd | 46 - man/call_aux.Rd | 56 - man/change_grouped_stats_to_csv.Rd | 37 - man/check_api.Rd | 49 - man/datt_rural.Rd | 53 - man/datt_urban.Rd | 55 - man/delete_cache.Rd | 34 - man/display_aux.Rd | 98 +-- man/get_aux.Rd | 629 +++++++++---------- man/get_cache_info.Rd | 34 - man/get_cp.Rd | 124 +-- man/get_cp_ki.Rd | 114 +-- man/get_gd.Rd | 199 +++--- man/get_pip_info.Rd | 49 - man/get_stats.Rd | 275 ++++---- man/get_versions.Rd | 55 - man/parse_error_body.Rd | 34 - man/parse_response.Rd | 46 - man/pip_is_transient.Rd | 36 - man/rename_cols.Rd | 44 - man/retry_after.Rd | 36 - man/run_cli.Rd | 30 man/set_aux.Rd | 44 - man/unnest_ki.Rd | 44 - tests/testthat.R | 8 tests/testthat/test-caching.R | 66 +- tests/testthat/test-display_aux.R | 34 - tests/testthat/test-get_aux.R | 149 ++-- tests/testthat/test-get_cp.R | 177 +++-- tests/testthat/test-get_cp_ki.R | 263 +++++--- tests/testthat/test-get_gd.R | 228 +++---- tests/testthat/test-get_stats.R | 608 ++++++++++-------- tests/testthat/test-other.R | 100 +-- tests/testthat/test-utils.R | 672 ++++++++++++-------- 54 files changed, 5011 insertions(+), 4256 deletions(-)
Title: Open Population Capture-Recapture
Description: Non-spatial and spatial open-population capture-recapture analysis.
Author: Murray Efford [aut, cre]
Maintainer: Murray Efford <murray.efford@otago.ac.nz>
Diff between openCR versions 2.2.7 dated 2024-10-23 and 2.2.8 dated 2026-09-30
DESCRIPTION | 11 MD5 | 30 NEWS | 921 +++++++------- R/getfn.R | 7 R/loglik.R | 23 R/logliksecr.R | 68 - R/makeNewData.openCR.R | 364 ++--- R/openCR.design.R | 91 - R/openCR.fit.R | 10 R/utility.R | 2736 +++++++++++++++++++++---------------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/openCR-vignette.R | 174 +- inst/doc/openCR-vignette.pdf |binary man/microtus.Rd | 5 man/openCR-package.Rd | 210 +-- 16 files changed, 2347 insertions(+), 2303 deletions(-)
Title: Actuarial Functions for Non-Life Insurance Modelling
Description: Assists actuaries and other insurance modellers in pricing,
reserving and capital modelling for non-life insurance and
reinsurance modelling. Provides functions that help model
excess levels, capping and pure Incurred but not reported
claims (pure IBNR).
Includes capped mean, exposure curves and increased limit
factor curves (ILFs) for LogNormal, Gamma, Pareto, Sliced
LogNormal-Pareto and Sliced Gamma-Pareto distributions.
Includes mean, probability density function (pdf), cumulative
probability function (cdf) and inverse cumulative probability
function for Sliced LogNormal-Pareto and Sliced Gamma-Pareto
distributions.
Includes calculating pure IBNR exposure with LogNormal and
Gamma distribution for reporting delay.
Includes three 'shiny' tools: a claims simulator with reinsurance
structures, a generalised linear model fitting tool, and a claims
frequency and severity distribution fitting tool.
Methods used in the package refer to
Free for All by Yiannis Parizas (2023) <https://www. [...truncated...]
Author: Yiannis Parizas [aut, cre]
Maintainer: Yiannis Parizas <yiannis.parizas@gmail.com>
Diff between NetSimR versions 0.3.1 dated 2026-09-22 and 0.3.2 dated 2026-09-30
DESCRIPTION | 6 +++--- MD5 | 10 +++++----- NEWS | 9 +++++++++ R/settings_file.R | 4 +++- inst/WORDLIST | 1 + tests/testthat/test-settings-file.R | 20 ++++++++++++++++++-- 6 files changed, 39 insertions(+), 11 deletions(-)
Title: Analyzing Partial Rankings in Networks
Description: Implements methods for centrality related analyses of networks.
While the package includes the possibility to build more than 20 indices,
its main focus lies on index-free assessment of centrality via partial
rankings obtained by neighborhood-inclusion or positional dominance. These
partial rankings can be analyzed with different methods, including
probabilistic methods like computing expected node ranks and relative
rank probabilities (how likely is it that a node is more central than another?).
The methodology is described in depth in the vignettes and in
Schoch (2018) <doi:10.1016/j.socnet.2017.12.003>.
Author: David Schoch [aut, cre] ,
Julian Mueller [ctb]
Maintainer: David Schoch <david@schochastics.net>
Diff between netrankr versions 1.2.4 dated 2025-02-05 and 2.0.0 dated 2026-09-30
netrankr-1.2.4/netrankr/R/plot.rank.intervals.R |only netrankr-1.2.4/netrankr/man/plot_rank_intervals.Rd |only netrankr-1.2.4/netrankr/src/resistanceDistance.cpp |only netrankr-2.0.0/netrankr/DESCRIPTION | 16 netrankr-2.0.0/netrankr/MD5 | 172 +++---- netrankr-2.0.0/netrankr/NAMESPACE | 22 netrankr-2.0.0/netrankr/NEWS.md | 88 +++ netrankr-2.0.0/netrankr/R/RcppExports.R | 42 - netrankr-2.0.0/netrankr/R/aggregate.index.R | 11 netrankr-2.0.0/netrankr/R/approximate.ranks.R | 135 +---- netrankr-2.0.0/netrankr/R/check.preservation.R | 12 netrankr-2.0.0/netrankr/R/comparable.pairs.R | 18 netrankr-2.0.0/netrankr/R/compare.ranks.R | 6 netrankr-2.0.0/netrankr/R/dominance.graph.R | 7 netrankr-2.0.0/netrankr/R/get.rankings.R | 11 netrankr-2.0.0/netrankr/R/hyperbolic.index.R | 46 - netrankr-2.0.0/netrankr/R/index.builder.R | 163 +++--- netrankr-2.0.0/netrankr/R/indirect.relations.R | 239 +++++----- netrankr-2.0.0/netrankr/R/majorization.gap.R | 55 -- netrankr-2.0.0/netrankr/R/mcmc.rank.R | 56 -- netrankr-2.0.0/netrankr/R/neighborhood.inclusion.R | 19 netrankr-2.0.0/netrankr/R/netswan.R | 169 +++---- netrankr-2.0.0/netrankr/R/positional.dominance.R | 39 + netrankr-2.0.0/netrankr/R/rank.analysis.R | 117 +--- netrankr-2.0.0/netrankr/R/rank.interval.R | 15 netrankr-2.0.0/netrankr/R/spectral.gap.R | 29 - netrankr-2.0.0/netrankr/R/threshold.graph.R | 20 netrankr-2.0.0/netrankr/R/transform.relations.R | 19 netrankr-2.0.0/netrankr/R/transitive.reduction.R | 1 netrankr-2.0.0/netrankr/R/utils.R | 56 -- netrankr-2.0.0/netrankr/R/validation.R |only netrankr-2.0.0/netrankr/build/vignette.rds |binary netrankr-2.0.0/netrankr/inst/doc/benchmarks.html | 28 - netrankr-2.0.0/netrankr/inst/doc/centrality_indices.html | 5 netrankr-2.0.0/netrankr/inst/doc/indirect_relations.html | 5 netrankr-2.0.0/netrankr/inst/doc/neighborhood_inclusion.html | 13 netrankr-2.0.0/netrankr/inst/doc/partial_centrality.Rmd | 2 netrankr-2.0.0/netrankr/inst/doc/partial_centrality.html | 37 - netrankr-2.0.0/netrankr/inst/doc/positional_dominance.html | 5 netrankr-2.0.0/netrankr/inst/doc/probabilistic_cent.html | 7 netrankr-2.0.0/netrankr/inst/doc/threshold_graph.R | 2 netrankr-2.0.0/netrankr/inst/doc/threshold_graph.Rmd | 2 netrankr-2.0.0/netrankr/inst/doc/threshold_graph.html | 104 ++-- netrankr-2.0.0/netrankr/inst/doc/use_case.R | 2 netrankr-2.0.0/netrankr/inst/doc/use_case.Rmd | 2 netrankr-2.0.0/netrankr/inst/doc/use_case.html | 42 - netrankr-2.0.0/netrankr/man/incomparable_pairs.Rd | 4 netrankr-2.0.0/netrankr/man/indirect_relations.Rd | 13 netrankr-2.0.0/netrankr/man/majorization_gap.Rd | 3 netrankr-2.0.0/netrankr/man/netrankr-package.Rd | 5 netrankr-2.0.0/netrankr/man/rank_intervals.Rd | 8 netrankr-2.0.0/netrankr/man/spectral_gap.Rd | 5 netrankr-2.0.0/netrankr/man/swan_closeness.Rd | 2 netrankr-2.0.0/netrankr/man/swan_efficiency.Rd | 20 netrankr-2.0.0/netrankr/man/threshold_graph.Rd | 2 netrankr-2.0.0/netrankr/src/Makevars | 3 netrankr-2.0.0/netrankr/src/Makevars.win | 3 netrankr-2.0.0/netrankr/src/RcppExports.cpp | 84 --- netrankr-2.0.0/netrankr/src/approx_expected.cpp | 4 netrankr-2.0.0/netrankr/src/approxrelative.cpp | 9 netrankr-2.0.0/netrankr/src/checkPairs.cpp | 14 netrankr-2.0.0/netrankr/src/dependCurFlow.cpp | 2 netrankr-2.0.0/netrankr/src/dependRspn.cpp | 74 +-- netrankr-2.0.0/netrankr/src/dependency.cpp | 91 +-- netrankr-2.0.0/netrankr/src/latticeOfIdeals.cpp | 2 netrankr-2.0.0/netrankr/src/listingIdeals.cpp | 45 - netrankr-2.0.0/netrankr/src/mcmc_rank.cpp | 146 ++---- netrankr-2.0.0/netrankr/src/nialgo.cpp | 65 +- netrankr-2.0.0/netrankr/src/pdalgo.cpp | 5 netrankr-2.0.0/netrankr/src/preserve.cpp | 2 netrankr-2.0.0/netrankr/src/rankProbs.cpp | 38 - netrankr-2.0.0/netrankr/src/rankings.cpp | 11 netrankr-2.0.0/netrankr/src/transreduct.cpp | 8 netrankr-2.0.0/netrankr/src/treeOfIdeals.cpp | 36 + netrankr-2.0.0/netrankr/tests/testthat/test-comparable.pairs.R | 2 netrankr-2.0.0/netrankr/tests/testthat/test-hyperbolic.index.R | 2 netrankr-2.0.0/netrankr/tests/testthat/test_approximations.R | 1 netrankr-2.0.0/netrankr/tests/testthat/test_coverage_gaps.R |only netrankr-2.0.0/netrankr/tests/testthat/test_cpp_regressions.R |only netrankr-2.0.0/netrankr/tests/testthat/test_dominance.R | 1 netrankr-2.0.0/netrankr/tests/testthat/test_exact_rank_prob.R | 1 netrankr-2.0.0/netrankr/tests/testthat/test_graph_utils.R |only netrankr-2.0.0/netrankr/tests/testthat/test_helpers.R | 1 netrankr-2.0.0/netrankr/tests/testthat/test_index_builder.R |only netrankr-2.0.0/netrankr/tests/testthat/test_indices.R | 1 netrankr-2.0.0/netrankr/tests/testthat/test_indirect_relations.R | 3 netrankr-2.0.0/netrankr/tests/testthat/test_relations_regressions.R |only netrankr-2.0.0/netrankr/tests/testthat/test_threshold_graph.R | 1 netrankr-2.0.0/netrankr/tests/testthat/test_validation.R |only netrankr-2.0.0/netrankr/vignettes/partial_centrality.Rmd | 2 netrankr-2.0.0/netrankr/vignettes/threshold_graph.Rmd | 2 netrankr-2.0.0/netrankr/vignettes/use_case.Rmd | 2 92 files changed, 1221 insertions(+), 1341 deletions(-)
Title: Probing, Plotting, and Interpreting Multilevel Interaction
Effects
Description: Provides a workflow for probing, plotting, and checking
cross-level interaction effects in two-level mixed-effects models fitted
with 'lme4' (Bates et al., 2015) <doi:10.18637/jss.v067.i01>. Implements
simple slopes analysis following Aiken and West (1991,
ISBN:9780761907121), Johnson-Neyman intervals following Johnson and Fay
(1950) <doi:10.1007/BF02288864> and Bauer and Curran (2005)
<doi:10.1207/s15327906mbr4003_5>, and grand- or group-mean centering as
described in Enders and Tofighi (2007) <doi:10.1037/1082-989X.12.2.121>.
Tests and intervals use Satterthwaite degrees of freedom via 'lmerTest'
(Kuznetsova et al., 2017) <doi:10.18637/jss.v082.i13> by default, with
Kenward-Roger and between-cluster alternatives. Also provides confidence
and new-cluster prediction intervals for simple slopes in random-slope
models, contour plots of predicted outcomes over the predictor-by-moderator
space, and leave-one-cluster-out influence diagnostics for the
interactio [...truncated...]
Author: Subir Hait [aut, cre]
Maintainer: Subir Hait <haitsubi@msu.edu>
Diff between mlmoderator versions 0.2.1 dated 2026-04-03 and 0.3.0 dated 2026-09-30
DESCRIPTION | 49 +- MD5 | 71 ++- NAMESPACE | 4 NEWS.md |only R/mlm_jn.R | 150 +++++--- R/mlm_plot.R | 70 +-- R/mlm_probe.R | 66 ++- R/mlm_sensitivity.R | 613 +++++++++++---------------------- R/mlm_summary.R | 44 +- R/mlm_surface.R | 8 R/mlm_variance_decomp.R | 223 +++++------- R/mlmoderator-package.R | 18 R/utils_predict.R | 86 +--- R/utils_vcov.R | 188 +++++++--- README.md | 297 ++------------- build/partial.rdb |only build/vignette.rds |binary inst/doc/cross-level-interactions.html | 56 +-- inst/doc/getting-started.html | 62 +-- inst/doc/hsb-workflow.R |only inst/doc/hsb-workflow.Rmd |only inst/doc/hsb-workflow.html |only man/mlm_center.Rd | 22 - man/mlm_jn.Rd | 73 +++ man/mlm_plot.Rd | 56 ++- man/mlm_probe.Rd | 76 ++-- man/mlm_sensitivity.Rd | 155 ++++---- man/mlm_summary.Rd | 48 +- man/mlm_surface.Rd | 51 +- man/mlm_variance_decomp.Rd | 121 +++--- man/mlmoderator-package.Rd | 48 +- man/plot.mlm_jn.Rd | 12 man/plot.mlm_sensitivity.Rd | 12 man/plot.mlm_variance_decomp.Rd | 4 man/school_data.Rd | 12 tests/testthat/helper.R | 13 tests/testthat/test-inference.R |only tests/testthat/test-jn-exact.R |only tests/testthat/test-sensitivity.R |only tests/testthat/test-surface-summary.R |only tests/testthat/test-variance_decomp.R |only vignettes/hsb-workflow.Rmd |only 42 files changed, 1272 insertions(+), 1436 deletions(-)
Title: Network Analysis and Visualization
Description: Routines for simple graphs and network analysis. It can
handle large graphs very well and provides functions for generating
random and regular graphs, graph visualization, centrality methods and
much more.
Author: Gabor Csardi [aut] ,
Tamas Nepusz [aut] ,
Vincent Traag [aut] ,
Szabolcs Horvat [aut] ,
Fabio Zanini [aut] ,
Daniel Noom [aut],
Kirill Mueller [aut, cre] ,
Michael Antonov [ctb],
Chan Zuckerberg Initiative [fnd] ,
David Schoch [aut] ,
Maelle Salmon [a [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between igraph versions 2.3.3 dated 2026-06-26 and 2.3.4 dated 2026-09-30
DESCRIPTION | 16 MD5 | 714 ++++++++++++++-------------- NAMESPACE | 78 +-- NEWS.md | 11 R/igraph-package.R | 1 R/plot.common.R | 2 build/partial.rdb |binary build/vignette.rds |binary inst/benchmarks/time_sgm.R | 2 inst/doc/igraph.html | 86 +-- inst/doc/igraph_ES.html | 114 ++-- man/E.Rd | 10 man/V.Rd | 10 man/aaa-igraph-package.Rd | 1 man/add_edges.Rd | 48 - man/add_layout_.Rd | 44 - man/add_vertices.Rd | 48 - man/adjacent_vertices.Rd | 28 - man/all_simple_paths.Rd | 12 man/alpha_centrality.Rd | 26 - man/are_adjacent.Rd | 28 - man/articulation_points.Rd | 12 man/as.matrix.igraph.Rd | 22 man/as_adj_list.Rd | 22 man/as_adjacency_matrix.Rd | 22 man/as_biadjacency_matrix.Rd | 22 man/as_directed.Rd | 22 man/as_edgelist.Rd | 22 man/as_graphnel.Rd | 22 man/as_ids.Rd | 10 man/as_long_data_frame.Rd | 22 man/as_membership.Rd | 40 - man/automorphism_group.Rd | 4 man/betweenness.Rd | 26 - man/bfs.Rd | 50 - man/biconnected_components.Rd | 12 man/bipartite_mapping.Rd | 8 man/bipartite_projection.Rd | 8 man/c.igraph.es.Rd | 24 man/c.igraph.vs.Rd | 24 man/canonical_permutation.Rd | 18 man/categorical_pal.Rd | 8 man/centr_betw.Rd | 18 man/centr_betw_tmax.Rd | 18 man/centr_clo.Rd | 18 man/centr_clo_tmax.Rd | 18 man/centr_degree.Rd | 18 man/centr_degree_tmax.Rd | 18 man/centr_eigen.Rd | 18 man/centr_eigen_tmax.Rd | 18 man/centralize.Rd | 18 man/cliques.Rd | 10 man/closeness.Rd | 26 - man/cluster_edge_betweenness.Rd | 40 - man/cluster_fast_greedy.Rd | 40 - man/cluster_fluid_communities.Rd | 40 - man/cluster_infomap.Rd | 40 - man/cluster_label_prop.Rd | 40 - man/cluster_leading_eigen.Rd | 42 - man/cluster_leiden.Rd | 40 - man/cluster_louvain.Rd | 40 - man/cluster_optimal.Rd | 40 - man/cluster_spinglass.Rd | 40 - man/cluster_walktrap.Rd | 40 - man/cocitation.Rd | 4 man/communities.Rd | 40 - man/compare.Rd | 40 - man/complementer.Rd | 48 - man/component_wise.Rd | 50 - man/components.Rd | 62 +- man/compose.Rd | 48 - man/consensus_tree.Rd | 16 man/constraint.Rd | 50 - man/contract.Rd | 48 - man/convex_hull.Rd | 6 man/coreness.Rd | 50 - man/count_automorphisms.Rd | 4 man/count_isomorphisms.Rd | 18 man/count_motifs.Rd | 8 man/count_reachable.Rd | 12 man/count_subgraph_isomorphisms.Rd | 18 man/decompose.Rd | 12 man/degree.Rd | 50 - man/delete_edge_attr.Rd | 32 - man/delete_edges.Rd | 48 - man/delete_graph_attr.Rd | 32 - man/delete_vertex_attr.Rd | 32 - man/delete_vertices.Rd | 48 - man/dfs.Rd | 50 - man/diameter.Rd | 12 man/difference.Rd | 48 - man/difference.igraph.Rd | 48 - man/difference.igraph.es.Rd | 24 man/difference.igraph.vs.Rd | 24 man/dim_select.Rd | 6 man/disjoint_union.Rd | 48 - man/distances.Rd | 62 +- man/diverging_pal.Rd | 8 man/diversity.Rd | 26 - man/dominator_tree.Rd | 22 man/dot-data.Rd | 2 man/dyad_census.Rd | 8 man/each_edge.Rd | 6 man/eccentricity.Rd | 12 man/edge.Rd | 48 - man/edge_attr-set.Rd | 32 - man/edge_attr.Rd | 32 - man/edge_attr_names.Rd | 32 - man/edge_connectivity.Rd | 22 man/edge_density.Rd | 50 - man/ego.Rd | 98 +-- man/eigen_centrality.Rd | 26 - man/embed_adjacency_matrix.Rd | 6 man/embed_laplacian_matrix.Rd | 6 man/ends.Rd | 28 - man/erdos.renyi.game.Rd | 54 +- man/feedback_arc_set.Rd | 66 +- man/feedback_vertex_set.Rd | 66 +- man/find_cycle.Rd | 16 man/fit_hrg.Rd | 16 man/get_edge_ids.Rd | 28 - man/girth.Rd | 66 +- man/gorder.Rd | 28 - man/graph.motifs.Rd | 2 man/graph_attr-set.Rd | 32 - man/graph_attr.Rd | 32 - man/graph_attr_names.Rd | 32 - man/graph_center.Rd | 12 man/graph_from_adj_list.Rd | 22 man/graph_from_atlas.Rd | 34 - man/graph_from_biadjacency_matrix.Rd | 4 man/graph_from_data_frame.Rd | 26 - man/graph_from_edgelist.Rd | 34 - man/graph_from_graphdb.Rd | 6 man/graph_from_graphnel.Rd | 22 man/graph_from_isomorphism_class.Rd | 18 man/graph_from_literal.Rd | 34 - man/graph_version.Rd | 4 man/groups.Rd | 40 - man/gsize.Rd | 28 - man/harmonic_centrality.Rd | 26 - man/has_eulerian_path.Rd | 16 man/head_of.Rd | 28 - man/hits_scores.Rd | 26 - man/hrg-methods.Rd | 18 man/hrg.Rd | 16 man/hrg_tree.Rd | 16 man/hub_score.Rd | 26 - man/igraph-attribute-combination.Rd | 34 - man/igraph-dollar.Rd | 34 - man/igraph-es-attributes.Rd | 12 man/igraph-es-indexing.Rd | 38 - man/igraph-es-indexing2.Rd | 38 - man/igraph-minus.Rd | 50 - man/igraph-vs-attributes.Rd | 46 - man/igraph-vs-indexing.Rd | 38 - man/igraph-vs-indexing2.Rd | 38 - man/igraph_options.Rd | 4 man/incident.Rd | 28 - man/incident_edges.Rd | 28 - man/intersection.Rd | 48 - man/intersection.igraph.Rd | 48 - man/intersection.igraph.es.Rd | 24 man/intersection.igraph.vs.Rd | 24 man/is_acyclic.Rd | 66 +- man/is_biconnected.Rd | 12 man/is_bipartite.Rd | 8 man/is_chordal.Rd | 4 man/is_complete.Rd | 8 man/is_dag.Rd | 66 +- man/is_degseq.Rd | 4 man/is_directed.Rd | 28 - man/is_forest.Rd | 10 man/is_graphical.Rd | 4 man/is_min_separator.Rd | 22 man/is_printer_callback.Rd | 4 man/is_separator.Rd | 22 man/is_tree.Rd | 10 man/isomorphic.Rd | 18 man/isomorphism_class.Rd | 18 man/isomorphisms.Rd | 20 man/ivs.Rd | 8 man/k_shortest_paths.Rd | 50 - man/keeping_degseq.Rd | 6 man/knn.Rd | 50 - man/layout_.Rd | 44 - man/layout_as_bipartite.Rd | 44 - man/layout_as_star.Rd | 44 - man/layout_as_tree.Rd | 44 - man/layout_in_circle.Rd | 44 - man/layout_modifier.Rd | 6 man/layout_nicely.Rd | 44 - man/layout_on_grid.Rd | 44 - man/layout_on_sphere.Rd | 44 - man/layout_randomly.Rd | 44 - man/layout_with_dh.Rd | 44 - man/layout_with_fr.Rd | 44 - man/layout_with_gem.Rd | 44 - man/layout_with_graphopt.Rd | 44 - man/layout_with_kk.Rd | 44 - man/layout_with_lgl.Rd | 44 - man/layout_with_mds.Rd | 44 - man/layout_with_sugiyama.Rd | 44 - man/leading.eigenvector.community.Rd | 2 man/local_scan.Rd | 4 man/make_.Rd | 52 +- man/make_bipartite_graph.Rd | 8 man/make_chordal_ring.Rd | 34 - man/make_circulant.Rd | 34 - man/make_clusters.Rd | 40 - man/make_empty_graph.Rd | 34 - man/make_from_prufer.Rd | 10 man/make_full_citation_graph.Rd | 34 - man/make_full_graph.Rd | 34 - man/make_full_multipartite.Rd | 34 - man/make_graph.Rd | 34 - man/make_lattice.Rd | 34 - man/make_ring.Rd | 34 - man/make_star.Rd | 34 - man/make_tree.Rd | 34 - man/make_turan.Rd | 34 - man/make_wheel.Rd | 34 - man/matching.Rd | 50 - man/max_cardinality.Rd | 4 man/max_flow.Rd | 22 man/maximal.cliques.Rd | 2 man/merge_coords.Rd | 44 - man/min_cut.Rd | 22 man/min_separators.Rd | 22 man/min_st_separators.Rd | 22 man/modularity.igraph.Rd | 40 - man/motifs.Rd | 10 man/neighbors.Rd | 28 - man/norm_coords.Rd | 44 - man/normalize.Rd | 50 - man/page_rank.Rd | 26 - man/path.Rd | 48 - man/permute.Rd | 48 - man/pipe.Rd | 3 man/plot.common.Rd | 8 man/plot.igraph.Rd | 4 man/plot.sir.Rd | 4 man/plot_dendrogram.communities.Rd | 40 - man/plus-.igraph.Rd | 48 - man/power_centrality.Rd | 26 - man/predict_edges.Rd | 16 man/print.igraph.es.Rd | 10 man/print.igraph.vs.Rd | 10 man/print.igraphHRG.Rd | 16 man/print.igraphHRGConsensus.Rd | 16 man/printer_callback.Rd | 4 man/r_pal.Rd | 8 man/radius.Rd | 12 man/read_graph.Rd | 6 man/reciprocity.Rd | 50 - man/rep.igraph.Rd | 48 - man/rev.igraph.es.Rd | 24 man/rev.igraph.vs.Rd | 24 man/reverse_edges.Rd | 48 - man/rewire.Rd | 6 man/rglplot.Rd | 4 man/running_mean.Rd | 6 man/sample_.Rd | 72 +- man/sample_bipartite.Rd | 54 +- man/sample_bipartite_gnm.Rd | 54 +- man/sample_chung_lu.Rd | 54 +- man/sample_correlated_gnp.Rd | 54 +- man/sample_correlated_gnp_pair.Rd | 54 +- man/sample_degseq.Rd | 54 +- man/sample_dirichlet.Rd | 6 man/sample_dot_product.Rd | 54 +- man/sample_fitness.Rd | 54 +- man/sample_fitness_pl.Rd | 54 +- man/sample_forestfire.Rd | 54 +- man/sample_gnm.Rd | 54 +- man/sample_gnp.Rd | 54 +- man/sample_grg.Rd | 54 +- man/sample_growing.Rd | 54 +- man/sample_hierarchical_sbm.Rd | 54 +- man/sample_hrg.Rd | 16 man/sample_islands.Rd | 54 +- man/sample_k_regular.Rd | 54 +- man/sample_last_cit.Rd | 54 +- man/sample_motifs.Rd | 8 man/sample_pa.Rd | 54 +- man/sample_pa_age.Rd | 54 +- man/sample_pref.Rd | 54 +- man/sample_sbm.Rd | 54 +- man/sample_seq.Rd | 6 man/sample_smallworld.Rd | 54 +- man/sample_spanning_tree.Rd | 10 man/sample_sphere_surface.Rd | 6 man/sample_sphere_volume.Rd | 6 man/sample_traits_callaway.Rd | 54 +- man/sample_tree.Rd | 54 +- man/scan_stat.Rd | 4 man/sequential_pal.Rd | 8 man/set_edge_attr.Rd | 32 - man/set_graph_attr.Rd | 32 - man/set_vertex_attr.Rd | 32 - man/set_vertex_attrs.Rd | 32 - man/similarity.Rd | 4 man/simple_cycles.Rd | 18 man/simplified.Rd | 18 man/simplify.Rd | 48 - man/sir.Rd | 4 man/spectrum.Rd | 26 - man/split_join_distance.Rd | 40 - man/st_cuts.Rd | 22 man/st_min_cuts.Rd | 22 man/strength.Rd | 26 - man/sub-.igraph.Rd | 28 - man/sub-sub-.igraph.Rd | 28 - man/subcomponent.Rd | 50 - man/subgraph.Rd | 50 - man/subgraph_centrality.Rd | 26 - man/subgraph_isomorphic.Rd | 18 man/subgraph_isomorphisms.Rd | 20 man/tail_of.Rd | 28 - man/to_prufer.Rd | 10 man/topo_sort.Rd | 50 - man/transitive_closure.Rd | 48 - man/transitivity.Rd | 50 - man/unfold_tree.Rd | 50 - man/union.Rd | 48 - man/union.igraph.Rd | 48 - man/union.igraph.es.Rd | 24 man/union.igraph.vs.Rd | 24 man/unique.igraph.es.Rd | 24 man/unique.igraph.vs.Rd | 24 man/upgrade_graph.Rd | 4 man/vertex.Rd | 48 - man/vertex_attr-set.Rd | 32 - man/vertex_attr.Rd | 32 - man/vertex_attr_names.Rd | 32 - man/vertex_connectivity.Rd | 22 man/voronoi_cells.Rd | 40 - man/weighted_cliques.Rd | 8 man/which_multiple.Rd | 50 - man/which_mutual.Rd | 50 - man/with_edge_.Rd | 18 man/with_graph_.Rd | 18 man/with_igraph_opt.Rd | 4 man/with_vertex_.Rd | 18 man/without_attr.Rd | 18 man/without_loops.Rd | 18 man/without_multiples.Rd | 18 man/write_graph.Rd | 6 tests/testthat/test-attributes.R | 2 tests/testthat/test-centrality.R | 4 tests/testthat/test-community.R | 46 - tests/testthat/test-conversion.R | 8 tests/testthat/test-flow.R | 2 tests/testthat/test-indexing.R | 8 tests/testthat/test-layout.R | 7 tests/testthat/test-make.R | 2 tests/testthat/test-other.R | 6 tests/testthat/test-structural-properties.R | 4 358 files changed, 5532 insertions(+), 5489 deletions(-)
Title: Exploratory Factor Analysis Functions for Assessing
Dimensionality
Description: Functions for an assortment of factor analysis-related
procedures, including eleven procedures for determining the number of
factors; for factor analysis with multiple options for methods of extraction
and rotation; for bi-factor analysis; for extension factor analysis;
options for running the analyses using either raw data
or correlation matrices as input and with options
for conducting the analyses using Pearson correlations,
Kendall correlations, Spearman correlations, gamma correlations, or polychoric
correlations; wrapper 'lavaan'-based functions for factorial invariance
and exploratory structural equation modeling;
functions for the factor-ability of a correlation matrix,
for the congruence between factors from different datasets, for the
assessment of local independence, for the assessment of factor solution
complexity, for internal consistency, and for correcting Pearson correlation
coefficients for attenuation due to unreliability.
Auerswald & Moshagen (2019, <doi:10.10 [...truncated...]
Author: Brian P. O'Connor [aut, cre]
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between EFA.dimensions versions 0.1.9.1 dated 2026-09-14 and 0.1.9.2 dated 2026-09-30
EFA.dimensions-0.1.9.1/EFA.dimensions/build |only EFA.dimensions-0.1.9.1/EFA.dimensions/inst |only EFA.dimensions-0.1.9.1/EFA.dimensions/vignettes |only EFA.dimensions-0.1.9.2/EFA.dimensions/DESCRIPTION | 11 +- EFA.dimensions-0.1.9.2/EFA.dimensions/MD5 | 39 ++-------- EFA.dimensions-0.1.9.2/EFA.dimensions/R/utilities_bifactor.R | 3 EFA.dimensions-0.1.9.2/EFA.dimensions/R/utilities_boc.R | 2 EFA.dimensions-0.1.9.2/EFA.dimensions/man/BIFACTOR.Rd | 20 +---- EFA.dimensions-0.1.9.2/EFA.dimensions/man/DIMTESTS.Rd | 9 -- EFA.dimensions-0.1.9.2/EFA.dimensions/man/EFA.Rd | 12 --- EFA.dimensions-0.1.9.2/EFA.dimensions/man/ESEM.Rd | 4 - EFA.dimensions-0.1.9.2/EFA.dimensions/man/Factorial_Invariance.Rd | 4 - EFA.dimensions-0.1.9.2/EFA.dimensions/man/INTERNAL_CONSISTENCY.Rd | 10 -- EFA.dimensions-0.1.9.2/EFA.dimensions/man/OMEGA.Rd | 15 +-- EFA.dimensions-0.1.9.2/EFA.dimensions/man/PCA.Rd | 11 -- 15 files changed, 47 insertions(+), 93 deletions(-)
More information about EFA.dimensions at CRAN
Permanent link
Title: Partial Least Squares Regression Models with Big Matrices
Description: Fast partial least squares (PLS) for dense and out-of-core data.
Provides SIMPLS (straightforward implementation of a statistically inspired
modification of the PLS method) and NIPALS (non-linear iterative partial least-squares) solvers,
plus kernel-style PLS variants ('kernelpls' and 'widekernelpls') with parity to 'pls'. Optimized for
'bigmemory'-backed matrices with streamed cross-products and chunked BLAS (Basic Linear Algebra Subprograms)
(XtX/XtY and XXt/YX), optional file-backed score sinks, and deterministic
testing helpers. Includes an auto-selection strategy that chooses between
XtX SIMPLS, XXt (wide) SIMPLS, and NIPALS based on (n, p) and a configurable
memory budget. About the package, Bertrand and Maumy (2023) <https://hal.science/hal-05352069>,
and <https://hal.science/hal-05352061> highlighted fitting and cross-validating
PLS regression models to big data. For more details about some of the techniques
featured in the package, Dayal and MacGregor (1997)
<d [...truncated...]
Author: Frederic Bertrand [cre, aut] ,
Myriam Maumy [aut]
Maintainer: Frederic Bertrand <frederic.bertrand@lecnam.net>
Diff between bigPLSR versions 0.7.2 dated 2025-12-01 and 0.8.0 dated 2026-09-30
DESCRIPTION | 17 MD5 | 113 ++- NAMESPACE | 2 NEWS.md | 20 R/filematrix_nipals.R |only R/filematrix_provider.R |only R/pls_fit.R | 111 ++- R/predict.R | 30 - build/vignette.rds |binary configure | 74 ++ inst/doc/bigPLSR-auto-selection.html | 4 inst/doc/bigPLSR-kpls-streaming.html | 4 inst/doc/bootstrap-strategies.R | 24 inst/doc/bootstrap-strategies.html | 47 - inst/doc/cross-validation-ic.R | 20 inst/doc/cross-validation-ic.html | 49 - inst/doc/double-rkhs-pls.R | 38 - inst/doc/double-rkhs-pls.html | 7 inst/doc/external-pls-benchmarks-long.R | 396 ++++++------- inst/doc/external-pls-benchmarks-long.html | 55 - inst/doc/external-pls-benchmarks-short.R | 232 ++++---- inst/doc/external-pls-benchmarks-short.html | 38 - inst/doc/kf-pls.html | 4 inst/doc/klogitpls.html | 4 inst/doc/kpls_review.html | 4 inst/doc/plotting-guide.R | 30 - inst/doc/plotting-guide.html | 37 - inst/doc/pls1-benchmark.R | 52 - inst/doc/pls1-benchmark.html | 805 +++++++++++++--------------- inst/doc/pls2-benchmark.R | 62 +- inst/doc/pls2-benchmark.html | 29 - inst/doc/rkhs-overview.html | 4 man/bigPLSR-package.Rd | 1 man/filematrix_provider.Rd |only man/plot_pls_biplot.Rd | 2 man/plot_pls_individuals.Rd | 2 man/plot_pls_variables.Rd | 2 man/pls_fit.Rd | 20 man/pls_predict_scores.Rd | 5 src/Makevars | 1 src/bigmatrix_utils.h | 35 + src/kf_pls.cpp | 68 -- src/pls_cpp.cpp | 28 tests/testthat/Rplots.pdf |binary tests/testthat/test-backends.R | 133 ++++ tests/testthat/test-filematrix-nipals.R |only tests/testthat/test-filematrix-provider.R |only tests/testthat/test-rkhs-bigmem-predict.R | 16 tests/testthat/test-rkhs-predict.R | 35 + vignettes/figures |only 50 files changed, 1410 insertions(+), 1250 deletions(-)
Title: Automatic Replication Tools for Meta-Analysis
Description: Provides a unified and straightforward interface for
performing a variety of meta-analysis methods directly from user data.
Users can input a data frame, specify key parameters, and effortlessly
execute and compare multiple common meta-analytic models. Designed for
immediate usability, the package facilitates transparent, reproducible
research without manual implementation of each analytical method.
Ideal for researchers aiming for efficiency and reproducibility, it
streamlines workflows from data preparation to results interpretation.
Author: Petr Čala [aut, cre],
Matyas Tvrz [ctb]
Maintainer: Petr Čala <61505008@fsv.cuni.cz>
Diff between artma versions 0.4.1 dated 2026-08-20 and 0.5.0 dated 2026-09-30
DESCRIPTION | 28 MD5 | 267 +++-- NAMESPACE | 1 NEWS.md | 87 + R/aaa.R | 93 + R/artma.R | 660 +++++++++++--- R/cli.R | 7 R/generated_check_manifest.R | 24 R/options.R | 42 R/viz.R | 10 inst/CITATION |only inst/artma/calc/methods/stem.R | 91 + inst/artma/const.R | 23 inst/artma/data/column_recognition.R | 660 ++++++++++++-- inst/artma/data/compute.R | 97 +- inst/artma/data/derivation.R |only inst/artma/data/derived_columns.R |only inst/artma/data/external_mapping.R |only inst/artma/data/index.R | 59 + inst/artma/data/interactive_mapping.R | 410 ++++++++ inst/artma/data/method_requirements.R | 15 inst/artma/data/na_handling.R | 54 - inst/artma/data/normalize.R | 199 ++++ inst/artma/data/preprocess.R | 116 ++ inst/artma/data/role_evidence.R |only inst/artma/data/schema_detect.R | 145 ++- inst/artma/data/schema_persist.R | 12 inst/artma/data/schema_reconcile.R | 173 ++- inst/artma/data/schema_ui.R | 366 ++++++- inst/artma/data/smart_detection.R | 178 +++ inst/artma/data/utils.R | 29 inst/artma/data_config/write.R | 46 inst/artma/econometric/bma.R | 245 +++-- inst/artma/econometric/exogeneity.R | 200 ++-- inst/artma/econometric/fma.R | 86 + inst/artma/econometric/nonlinear.R | 62 + inst/artma/econometric/p_hacking.R | 83 + inst/artma/interactive/ask.R | 8 inst/artma/interactive/effect_summary_stats.R | 64 - inst/artma/interactive/hub.R |only inst/artma/interactive/input.R |only inst/artma/interactive/menu.R |only inst/artma/interactive/method_picker.R |only inst/artma/interactive/options_file_menu.R |only inst/artma/interactive/preview.R |only inst/artma/interactive/save_preference.R | 46 inst/artma/interactive/welcome.R | 90 - inst/artma/libs/core/file_picker.R |only inst/artma/methods/best_practice_estimate.R | 63 - inst/artma/methods/bma.R | 10 inst/artma/methods/box_plot.R | 108 +- inst/artma/methods/effect_summary_stats.R | 57 - inst/artma/methods/exogeneity_tests.R | 1 inst/artma/methods/fma.R | 7 inst/artma/methods/funnel_plot.R | 244 ++++- inst/artma/methods/nonlinear_tests.R | 3 inst/artma/methods/p_hacking_tests.R | 45 inst/artma/methods/prima_facie_graphs.R | 60 - inst/artma/methods/robma.R | 23 inst/artma/methods/t_stat_histogram.R | 244 ++--- inst/artma/modules/method_execution.R | 51 - inst/artma/modules/methods_table.R | 12 inst/artma/modules/runtime_methods.R | 31 inst/artma/options/ask.R | 68 - inst/artma/options/column_preprocessing.R | 139 +- inst/artma/options/inspect.R | 11 inst/artma/options/last_used.R |only inst/artma/options/prompts.R | 214 +--- inst/artma/options/template.R | 152 ++- inst/artma/options/templates/options_template.yaml | 195 +++- inst/artma/options/type_registry.R | 9 inst/artma/options/typed_accessors.R | 11 inst/artma/output/export.R | 141 ++ inst/artma/visualization/best_practice_estimate.R | 47 inst/artma/visualization/bma.R |only inst/artma/visualization/colors.R | 279 +++-- inst/artma/visualization/export.R | 261 ++++- inst/artma/visualization/fork_safety.R | 130 ++ inst/artma/visualization/theme.R | 116 ++ inst/artma/visualization/ticks.R | 204 +++- inst/doc/getting-started.Rmd | 42 inst/doc/getting-started.html | 52 - inst/doc/methods-overview.Rmd | 2 inst/doc/methods-overview.html | 3 inst/doc/options-files.Rmd | 9 inst/doc/options-files.html | 14 man/artma-package.Rd | 5 man/artma.Rd | 29 man/execute_run.Rd |only man/invoke_runtime_methods.Rd | 16 man/options_delete.Rd | 9 man/prepare_run_context.Rd |only man/restore_last_options_file.Rd |only man/runtime_setup.Rd | 13 man/summarize_run.Rd |only man/unbound_runtime_options.Rd |only tests/testthat/fixtures |only tests/testthat/test-bma-inclusion-plot.R |only tests/testthat/test-bma.R | 192 ++++ tests/testthat/test-box-plot-study-label.R | 69 + tests/testthat/test-data-column-recognition-provisional.R |only tests/testthat/test-data-column-recognition-scenarios.R |only tests/testthat/test-data-column-recognition.R | 77 + tests/testthat/test-data-column-resolution.R | 9 tests/testthat/test-data-compute.R | 180 +++ tests/testthat/test-data-config-mapping-plausibility.R |only tests/testthat/test-data-derivation.R |only tests/testthat/test-data-derived-columns.R |only tests/testthat/test-data-encoding.R |only tests/testthat/test-data-external-mapping.R |only tests/testthat/test-data-interactive-mapping.R | 283 +++++- tests/testthat/test-data-method-requirements.R | 22 tests/testthat/test-data-na-handling.R | 170 +++ tests/testthat/test-data-prepare-phases.R | 23 tests/testthat/test-data-preprocess.R | 186 +++ tests/testthat/test-data-read.R | 92 + tests/testthat/test-data-role-evidence.R |only tests/testthat/test-data-schema-detect.R | 122 ++ tests/testthat/test-data-schema-reconcile.R | 621 +++++++++++++ tests/testthat/test-data-smart-detection.R | 187 +++ tests/testthat/test-econometric-exogeneity.R | 127 ++ tests/testthat/test-econometric-p-hacking.R | 213 +++- tests/testthat/test-effect-summary-stats-integration.R | 18 tests/testthat/test-effect-summary-stats.R | 117 ++ tests/testthat/test-file-picker.R |only tests/testthat/test-fma.R | 134 ++ tests/testthat/test-funnel-plot.R | 132 ++ tests/testthat/test-interactive-input.R |only tests/testthat/test-interactive-preview.R |only tests/testthat/test-linear-tests-real-data.R |only tests/testthat/test-method-execution.R | 24 tests/testthat/test-method-picker.R |only tests/testthat/test-methods-p-hacking-exogeneity.R | 117 ++ tests/testthat/test-nonlinear-tests.R | 44 tests/testthat/test-options-column-preprocessing.R | 90 + tests/testthat/test-options-file-menu.R |only tests/testthat/test-options-last-used.R |only tests/testthat/test-options-prompt-value.R |only tests/testthat/test-options-prompts.R |only tests/testthat/test-options-type-registry.R | 5 tests/testthat/test-options.R | 10 tests/testthat/test-output-export.R | 102 ++ tests/testthat/test-prima-facie-graphs.R | 39 tests/testthat/test-robma.R | 22 tests/testthat/test-run.R | 483 ++++++++++ tests/testthat/test-runtime-methods.R | 12 tests/testthat/test-session-hub.R |only tests/testthat/test-t-stat-histogram.R | 53 + tests/testthat/test-visualization-fork-safety.R | 70 + tests/testthat/test-visualization-preview.R |only tests/testthat/test-visualization-ticks.R |only tests/testthat/test-visualization.R | 97 +- vignettes/getting-started.Rmd | 42 vignettes/methods-overview.Rmd | 2 vignettes/options-files.Rmd | 9 155 files changed, 10205 insertions(+), 1896 deletions(-)
Title: Processing Agro-Environmental Data
Description: A set of tools for processing and analyzing data developed in the
context of the "Who Has Eaten the Planet" (WHEP) project, funded by the
European Research Council (ERC). For more details on multi-regional
input–output model "Food and Agriculture Biomass Input–Output" (FABIO) see
Bruckner et al. (2019) <doi:10.1021/acs.est.9b03554>.
Author: Catalin Covaci [aut, cre] ,
Eduardo Aguilera [aut, cph] ,
Alice Beckmann [aut] ,
Juan Infante [aut] ,
Justin Morgan [aut] ,
Joao Serra [ctb] ,
European Research Council [fnd]
Maintainer: Catalin Covaci <catalin.covaci@csic.es>
This is a re-admission after prior archival of version 0.3.0 dated 2026-03-03
Diff between whep versions 0.3.0 dated 2026-03-03 and 0.3.1 dated 2026-09-30
whep-0.3.0/whep/inst/doc/trade-sources-coverage.R |only whep-0.3.0/whep/inst/doc/trade-sources-coverage.Rmd |only whep-0.3.0/whep/inst/doc/trade-sources-coverage.html |only whep-0.3.0/whep/vignettes/trade-sources-coverage.Rmd |only whep-0.3.1/whep/DESCRIPTION | 9 ++++----- whep-0.3.1/whep/MD5 | 18 +++++++----------- whep-0.3.1/whep/NEWS.md | 10 ++++------ whep-0.3.1/whep/build/vignette.rds |binary whep-0.3.1/whep/inst/doc/harmonization_function.R | 2 -- whep-0.3.1/whep/inst/doc/harmonization_function.Rmd | 2 -- whep-0.3.1/whep/inst/doc/harmonization_function.html | 4 +--- whep-0.3.1/whep/vignettes/harmonization_function.Rmd | 2 -- 12 files changed, 16 insertions(+), 31 deletions(-)
Title: Interact with the 'Telegram' 'MTProto' API
Description: Provides a full-featured client for the 'Telegram' 'MTProto' protocol
(<https://core.telegram.org/api>), enabling programmatic access to 'Telegram'
chats, channels, messages, media, and stories. Implements binary encoding and
decoding of the 'Telegram' 'TL' (Type Language) schema, authentication
(including two-factor), encrypted transport, and high-level helpers for
downloading channel history and reactions at scale. Intended for
social-science research and data collection tasks that require direct API
access rather than the 'Bot API'.
Author: Roman Kyrychenko [aut, cre, cph]
Maintainer: Roman Kyrychenko <roman.kyrychenko@helsinki.fi>
Diff between telegramR versions 0.0.1 dated 2026-06-02 and 0.0.2 dated 2026-09-30
telegramR-0.0.1/telegramR/inst/extdata/vignettes/downloads |only telegramR-0.0.1/telegramR/man/TelegramBaseClient.Rd |only telegramR-0.0.2/telegramR/DESCRIPTION | 8 telegramR-0.0.2/telegramR/MD5 | 188 telegramR-0.0.2/telegramR/NAMESPACE | 6 telegramR-0.0.2/telegramR/NEWS.md | 21 telegramR-0.0.2/telegramR/R/abstract.R | 22 telegramR-0.0.2/telegramR/R/account.R | 20 telegramR-0.0.2/telegramR/R/aes.R | 18 telegramR-0.0.2/telegramR/R/aesctr.R | 12 telegramR-0.0.2/telegramR/R/authentificator.R | 48 telegramR-0.0.2/telegramR/R/authkey.R | 18 telegramR-0.0.2/telegramR/R/binaryreader.R | 286 telegramR-0.0.2/telegramR/R/channel_downloads.R | 29 telegramR-0.0.2/telegramR/R/chats.R | 566 telegramR-0.0.2/telegramR/R/common.R | 168 telegramR-0.0.2/telegramR/R/connection.R | 153 telegramR-0.0.2/telegramR/R/dialogs.R | 450 telegramR-0.0.2/telegramR/R/downloads.R | 27 telegramR-0.0.2/telegramR/R/entitycache.R | 3 telegramR-0.0.2/telegramR/R/factorization.R | 14 telegramR-0.0.2/telegramR/R/functions.R | 601 telegramR-0.0.2/telegramR/R/functions_account.R | 1411 telegramR-0.0.2/telegramR/R/functions_auth.R | 330 telegramR-0.0.2/telegramR/R/functions_bots.R | 775 telegramR-0.0.2/telegramR/R/functions_channels.R | 2517 telegramR-0.0.2/telegramR/R/functions_chatlists.R | 167 telegramR-0.0.2/telegramR/R/functions_contacts.R | 666 telegramR-0.0.2/telegramR/R/functions_folders.R | 15 telegramR-0.0.2/telegramR/R/functions_fragment.R | 25 telegramR-0.0.2/telegramR/R/functions_help.R | 351 telegramR-0.0.2/telegramR/R/functions_langpack.R | 70 telegramR-0.0.2/telegramR/R/functions_messages.R | 5476 telegramR-0.0.2/telegramR/R/functions_payments.R | 574 telegramR-0.0.2/telegramR/R/functions_phone.R | 549 telegramR-0.0.2/telegramR/R/functions_photos.R | 147 telegramR-0.0.2/telegramR/R/functions_premium.R | 67 telegramR-0.0.2/telegramR/R/functions_smsjobs.R | 91 telegramR-0.0.2/telegramR/R/functions_stats.R | 189 telegramR-0.0.2/telegramR/R/functions_stickers.R | 257 telegramR-0.0.2/telegramR/R/functions_stories.R | 1325 telegramR-0.0.2/telegramR/R/functions_updates.R | 42 telegramR-0.0.2/telegramR/R/functions_upload.R | 263 telegramR-0.0.2/telegramR/R/functions_users.R | 78 telegramR-0.0.2/telegramR/R/gzippacked.R | 22 telegramR-0.0.2/telegramR/R/helpers.R | 236 telegramR-0.0.2/telegramR/R/html.R | 81 telegramR-0.0.2/telegramR/R/http.R | 22 telegramR-0.0.2/telegramR/R/libssl.R | 12 telegramR-0.0.2/telegramR/R/markdown.R | 144 telegramR-0.0.2/telegramR/R/messagecontainer.R | 3 telegramR-0.0.2/telegramR/R/messagepacker.R | 16 telegramR-0.0.2/telegramR/R/messageparse.R | 14 telegramR-0.0.2/telegramR/R/messages.R | 53 telegramR-0.0.2/telegramR/R/mtprotoplainsender.R | 28 telegramR-0.0.2/telegramR/R/mtprotosender.R | 159 telegramR-0.0.2/telegramR/R/mtprotostate.R | 71 telegramR-0.0.2/telegramR/R/password.R | 44 telegramR-0.0.2/telegramR/R/requestiter.R | 15 telegramR-0.0.2/telegramR/R/requests.R | 698 telegramR-0.0.2/telegramR/R/requeststate.R | 12 telegramR-0.0.2/telegramR/R/rpcresult.R | 22 telegramR-0.0.2/telegramR/R/rsa.R | 52 telegramR-0.0.2/telegramR/R/tcpabridget.R | 20 telegramR-0.0.2/telegramR/R/tcpfull.R | 20 telegramR-0.0.2/telegramR/R/tcpintermediate.R | 36 telegramR-0.0.2/telegramR/R/tcpmtproxy.R | 40 telegramR-0.0.2/telegramR/R/tcpobfuscated.R | 19 telegramR-0.0.2/telegramR/R/telegrambaseclient.R | 149 telegramR-0.0.2/telegramR/R/telegramclient.R | 249 telegramR-0.0.2/telegramR/R/tlmessage.R | 10 telegramR-0.0.2/telegramR/R/tlobject.R | 297 telegramR-0.0.2/telegramR/R/types.R |104436 ++++++---- telegramR-0.0.2/telegramR/R/updates.R | 17 telegramR-0.0.2/telegramR/R/utils.R | 1511 telegramR-0.0.2/telegramR/R/zzz.R | 2 telegramR-0.0.2/telegramR/README.md | 4 telegramR-0.0.2/telegramR/configure | 44 telegramR-0.0.2/telegramR/inst/doc/channel-interactions.html | 3 telegramR-0.0.2/telegramR/inst/doc/download-data.html | 3 telegramR-0.0.2/telegramR/inst/doc/download-media.html | 3 telegramR-0.0.2/telegramR/inst/doc/zelenskiy-war-peace.html | 9 telegramR-0.0.2/telegramR/inst/integration |only telegramR-0.0.2/telegramR/man/TelegramClient.Rd | 1587 telegramR-0.0.2/telegramR/tests/testthat/helper-integration.R | 5 telegramR-0.0.2/telegramR/tests/testthat/test-binaryreader-deep.R | 1 telegramR-0.0.2/telegramR/tests/testthat/test-chats.R | 2 telegramR-0.0.2/telegramR/tests/testthat/test-functions_auth-extra.R | 14 telegramR-0.0.2/telegramR/tests/testthat/test-functions_contacts.R | 7 telegramR-0.0.2/telegramR/tests/testthat/test-functions_messages-extra.R | 6 telegramR-0.0.2/telegramR/tests/testthat/test-functions_messages-sweep.R | 19 telegramR-0.0.2/telegramR/tests/testthat/test-functions_stories-coverage.R | 12 telegramR-0.0.2/telegramR/tests/testthat/test-functions_upload.R | 12 telegramR-0.0.2/telegramR/tests/testthat/test-rsa.R | 2 telegramR-0.0.2/telegramR/tests/testthat/test-telegramclient.R | 3 telegramR-0.0.2/telegramR/tests/testthat/test-tl-bulk.R | 5 96 files changed, 83156 insertions(+), 45138 deletions(-)
More information about pediatric.zcalc at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-03-03 0.3.0
2025-10-15 0.2.0
2025-07-25 0.1.0