Title: Classification Based on Association Rules
Description: Provides the infrastructure for association rule-based classification including the algorithms
CBA, CMAR, CPAR, C4.5, FOIL, PART, PRM, RCAR, and RIPPER to build associative classifiers.
Hahsler et al (2019) <doi:10.32614/RJ-2019-048>.
Author: Michael Hahsler [aut, cre, cph] ,
Ian Johnson [aut, cph],
Tyler Giallanza [ctb]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between arulesCBA versions 1.2.9 dated 2025-11-14 and 1.2.10 dated 2026-10-01
arulesCBA-1.2.10/arulesCBA/DESCRIPTION | 17 arulesCBA-1.2.10/arulesCBA/MD5 | 90 ++-- arulesCBA-1.2.10/arulesCBA/NAMESPACE | 14 arulesCBA-1.2.10/arulesCBA/NEWS.md | 29 - arulesCBA-1.2.10/arulesCBA/R/AAAdata.R | 5 arulesCBA-1.2.10/arulesCBA/R/CBA.R | 12 arulesCBA-1.2.10/arulesCBA/R/CBA_helpers.R | 8 arulesCBA-1.2.10/arulesCBA/R/CBA_ruleset.R | 17 arulesCBA-1.2.10/arulesCBA/R/FOIL.R | 2 arulesCBA-1.2.10/arulesCBA/R/LUCS_KDD_CBA.R | 8 arulesCBA-1.2.10/arulesCBA/R/RCAR.R | 31 - arulesCBA-1.2.10/arulesCBA/R/RWeka_CBA.R | 8 arulesCBA-1.2.10/arulesCBA/R/discretizeDF.supervised.R | 8 arulesCBA-1.2.10/arulesCBA/R/mineCARs.R | 21 - arulesCBA-1.2.10/arulesCBA/R/predict.R | 4 arulesCBA-1.2.10/arulesCBA/R/prepareTransactions.R | 12 arulesCBA-1.2.10/arulesCBA/R/transactions2DF.R | 6 arulesCBA-1.2.10/arulesCBA/README.md | 110 ++--- arulesCBA-1.2.10/arulesCBA/build/partial.rdb |binary arulesCBA-1.2.10/arulesCBA/build/vignette.rds |only arulesCBA-1.2.10/arulesCBA/inst/doc |only arulesCBA-1.2.10/arulesCBA/man/CBA.Rd | 24 - arulesCBA-1.2.10/arulesCBA/man/CBA_helpers.Rd | 22 - arulesCBA-1.2.10/arulesCBA/man/CBA_ruleset.Rd | 35 - arulesCBA-1.2.10/arulesCBA/man/FOIL.Rd | 16 arulesCBA-1.2.10/arulesCBA/man/LUCS_KDD_CBA.Rd | 22 - arulesCBA-1.2.10/arulesCBA/man/Lymphography.Rd | 2 arulesCBA-1.2.10/arulesCBA/man/Mushroom.Rd | 2 arulesCBA-1.2.10/arulesCBA/man/RCAR.Rd | 45 +- arulesCBA-1.2.10/arulesCBA/man/RWeka_CBA.Rd | 28 - arulesCBA-1.2.10/arulesCBA/man/arulesCBA-package.Rd | 4 arulesCBA-1.2.10/arulesCBA/man/discretizeDF.supervised.Rd | 24 - arulesCBA-1.2.10/arulesCBA/man/mineCARs.Rd | 36 - arulesCBA-1.2.10/arulesCBA/man/predict.CBA.Rd | 13 arulesCBA-1.2.10/arulesCBA/man/prepareTransactions.Rd | 27 - arulesCBA-1.2.10/arulesCBA/man/transactions2DF.Rd | 15 arulesCBA-1.2.10/arulesCBA/src/weighted.c | 3 arulesCBA-1.2.10/arulesCBA/tests/testthat.R | 6 arulesCBA-1.2.10/arulesCBA/tests/testthat/test-CBA.R | 85 ++-- arulesCBA-1.2.10/arulesCBA/tests/testthat/test-CBA_helpers.R | 201 ++-------- arulesCBA-1.2.10/arulesCBA/tests/testthat/test-CBA_ruleset.R | 64 +-- arulesCBA-1.2.10/arulesCBA/tests/testthat/test-RCAR.R | 48 +- arulesCBA-1.2.10/arulesCBA/tests/testthat/test-classifiers.R | 184 ++++----- arulesCBA-1.2.10/arulesCBA/tests/testthat/test-data-preparation.R |only arulesCBA-1.2.10/arulesCBA/tests/testthat/test-discretize.R | 55 +- arulesCBA-1.2.10/arulesCBA/vignettes |only arulesCBA-1.2.9/arulesCBA/tests/testthat/test-LUCS_KDD.R |only 47 files changed, 647 insertions(+), 716 deletions(-)
Title: Matching Methods for Causal Inference with Time-Series
Cross-Sectional Data
Description: Implements a set of methodological tools
that enable researchers to apply matching methods to
time-series cross-sectional data. Imai, Kim, and Wang
(2023) <https://web.mit.edu/insong/www/pdf/tscs.pdf>
proposes a nonparametric generalization of the
difference-in-differences estimator, which does not rely
on the linearity assumption as often done in
practice. Researchers first select a method of matching
each treated observation for a given unit in a
particular time period with control observations from
other units in the same time period that have a similar
treatment and covariate history. These methods include
standard matching methods based on propensity score and
Mahalanobis distance, as well as weighting methods. Once
matching and refinement is done,
treatment effects can be estimated with
standard errors. The package also offers diagnostics for researchers to assess the quality
of their results.
Author: In Song Kim [aut, cre],
Adam Rauh [aut],
Erik Wang [aut],
Kosuke Imai [aut]
Maintainer: In Song Kim <insong@mit.edu>
Diff between PanelMatch versions 3.1.3 dated 2025-12-13 and 3.1.5 dated 2026-10-01
DESCRIPTION | 12 - MD5 | 31 ++-- NAMESPACE | 6 R/PanelMatch-package.R | 4 R/PanelMatch.R | 2 R/PanelMatchObject.R | 42 +++++ R/diagnostic_summary.R |only R/placebo_test.R | 19 +- R/treated_untreated_diagnostic.R |only inst/doc/panelmatch-overview.pdf |binary man/PanelMatch.Rd | 2 man/all.equal.PanelMatch.Rd |only man/compare_treated_observations.Rd |only man/diagnostic_summary.Rd |only man/placebo_test.Rd | 4 tests/manual_tests/test-PanelEstimateObject.R | 131 +++++++++++++++++ tests/manual_tests/test-PanelMatch.R | 1 tests/manual_tests/test-compare_treated_observations.R |only tests/manual_tests/test-diagnostic_summary.R |only tests/testthat/test-PanelMatch.R | 2 20 files changed, 225 insertions(+), 31 deletions(-)
Title: GWR, Mixed GWR with Spatial Autocorrelation and Multiscale
GWR/GTWR (Top-Down Scale Approaches)
Description: Provides methods for Geographically Weighted Regression with spatial autocorrelation (Geniaux and Martinetti 2017) <doi:10.1016/j.regsciurbeco.2017.04.001>. Implements Multiscale Geographically Weighted Regression with Top-Down Scale approaches (Geniaux 2026) <doi:10.1007/s10109-025-00481-4>.
Author: Ghislain Geniaux [aut, cre],
Davide Martinetti [aut],
Cesar Martinez [aut]
Maintainer: Ghislain Geniaux <ghislain.geniaux@inrae.fr>
Diff between mgwrsar versions 1.3.2 dated 2026-03-03 and 1.4.1 dated 2026-10-01
DESCRIPTION | 15 MD5 | 178 +- NAMESPACE | 9 NEWS.md | 49 R/ApproxiW.R | 3 R/INST_C.R | 3 R/MGWR.R | 24 R/MGWRSAR.R | 26 R/PhWY_C.R | 3 R/Proj_C.R | 3 R/QRcpp2_C.R | 3 R/Sl_C.R | 3 R/TDS_MGWR.R | 387 ++++- R/aicc_f.R | 3 R/atds_gwr.R | 4 R/check_inputs.R |only R/compute_Rk.R | 4 R/compute_ts.R | 4 R/format_and_diagno.R | 5 R/get_index_mahalanobis_dual_rcpp.R | 3 R/golden_search_2d_bandwidth.R | 11 R/gtwr_HWB2010.R |only R/gwr_beta_pivotal_qrp_cpp.R | 6 R/gwr_beta_pivotal_qrp_full.R | 4 R/gwr_beta_univar_cpp.R | 6 R/kernel_eval.R |only R/matprod.R |only R/methods.R | 124 + R/mgwr_beta_pivotal_qrp_mixed_cpp.R | 8 R/mgwrsar_bootstrap_test.R | 1 R/mgwrsar_normalize_parallel_control.R | 48 R/mgwrsar_thread_control.R |only R/mod.R | 3 R/multiscale_gwr.R | 3 R/normW.R | 4 R/predict_mgwrsar.R | 13 R/prep_d.R | 2 R/prep_var.R | 4 R/prep_w.R | 102 - R/reord_D.R | 1 R/rng_scope.R |only R/search_bandwidths.R | 14 R/simu_multiscale.R | 1 R/update_bandwidth_candidates.R | 113 - R/update_opt.R | 53 R/update_opt_known.R | 29 R/update_opt_st.R | 4 R/weights_cache.R |only R/zzz.R | 16 build/partial.rdb |binary build/vignette.rds |binary configure | 86 - inst/CITATION | 5 inst/doc/GWR-and-Mixed-GWR-with-spatial-autocorrelation.html | 4 inst/doc/GWR-with-Space-Time-Kernels.Rmd | 64 inst/doc/GWR-with-Space-Time-Kernels.html | 504 ++---- inst/doc/Intro_french_data.Rmd | 64 inst/doc/Intro_french_data.html | 505 ++---- inst/doc/Multiscale-GWR-using-top-down-scale-approach.Rmd | 32 inst/doc/Multiscale-GWR-using-top-down-scale-approach.html | 497 ++---- inst/doc/Speeding_up_GWR_like_models.Rmd | 64 inst/doc/Speeding_up_GWR_like_models.html | 506 ++---- man/MGWRSAR.Rd | 2 man/TDS_MGWR.Rd | 10 man/as_gtwr.Rd |only man/bw_gdt2hwb.Rd |only man/bw_hwb2gdt.Rd |only man/gtwr-class.Rd |only man/gtwr_HWB2010.Rd |only man/internal_functions.Rd | 26 man/search_bandwidths.Rd | 2 man/summary.gtwr.Rd |only man/summary.mgwrsar.Rd | 8 src/Makevars.win | 13 src/RcppExports_arma.cpp | 44 src/RcppExports_eigen.cpp | 15 src/gwr_core.cpp | 826 +++++++---- src/init.c | 14 src/mgwrsar.cpp | 12 tests/testthat/_coef_hashes.csv | 64 tests/testthat/_pred_hashes.csv | 4 tests/testthat/_singular_hashes.csv |only tests/testthat/test-Shat_fitted_GWR_model.R | 1 tests/testthat/test-Shat_fitted_MGWR_model.R | 1 tests/testthat/test-gtwr_HWB2010.R |only tests/testthat/test-leverage_bounds.R |only tests/testthat/test-matprod_backend.R |only tests/testthat/test-rng_side_effects.R |only tests/testthat/test-singular_cases.R |only tests/testthat/test-stress_campaign.R |only tests/testthat/test-tds_levers.R |only tests/testthat/test-tds_minv_warning.R |only tests/testthat/test-tds_panel_grid.R |only tests/testthat/test-weights_cache.R |only tools/check_hash_against_registry.R | 37 tools/regen_coef_hashes_gwr.R |only tools/singular_cases.R |only tools/stress_cases.R |only tools/stress_configs.R |only tools/stress_generators.R |only tools/write_singular_hashes.R |only vignettes/GWR-with-Space-Time-Kernels.Rmd | 64 vignettes/Intro_french_data.Rmd | 64 vignettes/Multiscale-GWR-using-top-down-scale-approach.Rmd | 32 vignettes/Speeding_up_GWR_like_models.Rmd | 64 105 files changed, 2681 insertions(+), 2252 deletions(-)
Title: Example Datasets for a Learning Guide to R
Description: A collection of example datasets, including several classics. Many of
these datasets are well suited for regression, classification, and visualization.
Author: Remko Duursma [aut, cre],
Jeff Powell [ctb]
Maintainer: Remko Duursma <remkoduursma@gmail.com>
Diff between lgrdata versions 0.1.1 dated 2019-06-19 and 0.1.2 dated 2026-10-01
DESCRIPTION | 10 ++--- MD5 | 78 ++++++++++++++++++++++----------------------- R/zzz.R | 20 +++++------ README.md | 11 ++---- man/allometry.Rd | 8 ++-- man/anthropometry.Rd | 8 ++-- man/automobiles.Rd | 8 ++-- man/berkeley.Rd | 8 ++-- man/brunhild.Rd | 8 ++-- man/callitrishydraulic.Rd | 8 ++-- man/cereal1.Rd | 6 ++- man/cereal2.Rd | 6 ++- man/cereal3.Rd | 6 ++- man/cereals.Rd | 8 ++-- man/choat_precipp50.Rd | 8 ++-- man/coweeta.Rd | 8 ++-- man/dutchelection.Rd | 8 ++-- man/eucface_gasexchange.Rd | 8 ++-- man/eucfacegc.Rd | 8 ++-- man/fluxtower.Rd | 16 +++++---- man/germination_fire.Rd | 8 ++-- man/germination_water.Rd | 8 ++-- man/hfeifbytree.Rd | 8 ++-- man/hfeifplotmeans.Rd | 8 ++-- man/hfemet2008.Rd | 12 ++++-- man/howell.Rd | 8 ++-- man/hydro.Rd | 12 ++++-- man/icecream.Rd | 8 ++-- man/masslost.Rd | 8 ++-- man/memory.Rd | 8 ++-- man/oil.Rd | 8 ++-- man/pulse.Rd | 8 ++-- man/pupae.Rd | 8 ++-- man/rain.Rd | 8 ++-- man/sydney_hobart_times.Rd | 8 ++-- man/titanic.Rd | 8 ++-- man/treecanopy.Rd | 12 ++++-- man/vessel.Rd | 8 ++-- man/weightloss.Rd | 8 ++-- man/wildmousemetabolism.Rd | 8 ++-- 40 files changed, 246 insertions(+), 175 deletions(-)
Title: Convenient Access to Los Angeles Open Data API Endpoints
Description: Provides simple, reproducible access to datasets from the
Los Angeles Open Data portal <https://data.lacity.org/>. Functions return
results as tidy tibbles and support optional filtering, sorting,
and row limits via the Socrata API.
Author: Christian Martinez [aut, cre]
Maintainer: Christian Martinez <c.martinez0@outlook.com>
Diff between laOpenData versions 0.1.0 dated 2026-04-16 and 0.1.1 dated 2026-10-01
DESCRIPTION | 14 +++++------ MD5 | 18 +++++++------- R/la_list_datasets.R | 2 - README.md | 44 ++++++++++++++++++----------------- inst/doc/getting-started.R | 8 +++--- inst/doc/getting-started.Rmd | 10 ++++---- inst/doc/getting-started.html | 52 +++++++++++++++++++++--------------------- man/laOpenData-package.Rd | 13 +++++++--- man/la_list_datasets.Rd | 2 - vignettes/getting-started.Rmd | 10 ++++---- 10 files changed, 90 insertions(+), 83 deletions(-)
Title: Causal Generalized Linear Models
Description: An implementation of methods for causal discovery in a structural causal model where the conditional distribution of the target node is described by a generalized linear model conditional on its causal parents.
Author: Veronica Vinciotti [aut, cre],
Ernst C. Wit [aut],
Francisco Richter [aut]
Maintainer: Veronica Vinciotti <veronica.vinciotti@unitn.it>
Diff between causalreg versions 0.1.2 dated 2026-03-01 and 0.3.0 dated 2026-10-01
causalreg-0.1.2/causalreg/R/cgam_all.R |only causalreg-0.1.2/causalreg/R/cgam_step.R |only causalreg-0.1.2/causalreg/R/cglm_all.R |only causalreg-0.1.2/causalreg/R/cglm_step.R |only causalreg-0.3.0/causalreg/DESCRIPTION | 25 +++++++--- causalreg-0.3.0/causalreg/MD5 | 44 +++++++++++++---- causalreg-0.3.0/causalreg/NAMESPACE | 5 ++ causalreg-0.3.0/causalreg/NEWS.md |only causalreg-0.3.0/causalreg/R/RcppExports.R |only causalreg-0.3.0/causalreg/R/boot_pval.R | 50 +++++++++++++------- causalreg-0.3.0/causalreg/R/causal_all.R |only causalreg-0.3.0/causalreg/R/causal_step.R |only causalreg-0.3.0/causalreg/R/causalreg-package.R |only causalreg-0.3.0/causalreg/R/cgam.R | 45 ++++++++++++------ causalreg-0.3.0/causalreg/R/cglm.R | 45 ++++++++++++------ causalreg-0.3.0/causalreg/R/helpers.R |only causalreg-0.3.0/causalreg/build |only causalreg-0.3.0/causalreg/inst |only causalreg-0.3.0/causalreg/man/boot_pval_cpp.Rd |only causalreg-0.3.0/causalreg/man/causalreg-package.Rd |only causalreg-0.3.0/causalreg/man/cgam.Rd | 27 ++++++++-- causalreg-0.3.0/causalreg/man/cglm.Rd | 25 ++++++++-- causalreg-0.3.0/causalreg/man/eval_submodels_cpp.Rd |only causalreg-0.3.0/causalreg/man/fast_fit_and_stat.Rd |only causalreg-0.3.0/causalreg/man/fast_glm_bic.Rd |only causalreg-0.3.0/causalreg/man/fast_glm_fit.Rd |only causalreg-0.3.0/causalreg/man/glm_loglik_cpp.Rd |only causalreg-0.3.0/causalreg/man/pearson_stat_cpp.Rd |only causalreg-0.3.0/causalreg/src |only causalreg-0.3.0/causalreg/tests |only causalreg-0.3.0/causalreg/vignettes |only 31 files changed, 190 insertions(+), 76 deletions(-)
Title: Computation of Tree (Im)Balance Indices
Description: The aim of the 'R' package 'treebalance' is to provide functions for the computation of
a large variety of (im)balance indices for rooted trees. The package accompanies the book
''Tree Balance Indices - A Comprehensive Survey'' by M. Fischer, L. Herbst, S. Kersting,
L. Kuehn and K. Wicke (2023) <doi:10.1007/978-3-031-39800-1>, which gives a precise
definition for the terms 'balance index' and 'imbalance index' (Chapter 4) and provides an
overview of the terminology in this manual (Chapter 2).
For further information on (im)balance indices, see also Fischer et al. (2021)
<https://treebalance.wordpress.com>.
Considering both established and new (im)balance indices, 'treebalance' provides (among
others) functions for calculating the following 18 established indices and index families: the
average leaf depth, the B1 and B2 index, the Colijn-Plazzotta rank, the normal, corrected,
quadratic and equal weights Colless index, the family of Colless-like indices, the family of
I-based [...truncated...]
Author: Mareike Fischer [aut] ,
Lina Herbst [aut] ,
Sophie Kersting [aut, cre] ,
Luise Kuehn [aut] ,
Kristina Wicke [aut]
Maintainer: Sophie Kersting <treebalanceindices@gmail.com>
Diff between treebalance versions 1.2.0 dated 2023-12-14 and 1.2.2 dated 2026-10-01
treebalance-1.2.0/treebalance/R/mCherryI.R |only treebalance-1.2.0/treebalance/man/mCherryI.Rd |only treebalance-1.2.2/treebalance/DESCRIPTION | 54 treebalance-1.2.2/treebalance/MD5 | 140 - treebalance-1.2.2/treebalance/NAMESPACE | 2 treebalance-1.2.2/treebalance/NEWS.md | 62 treebalance-1.2.2/treebalance/R/B1I.R | 100 - treebalance-1.2.2/treebalance/R/B2I.R | 137 - treebalance-1.2.2/treebalance/R/IbasedI.R | 296 +-- treebalance-1.2.2/treebalance/R/areaPerPairI.R | 6 treebalance-1.2.2/treebalance/R/auxFuncs.R | 1642 ++++++++++----------- treebalance-1.2.2/treebalance/R/avgLeafDepI.R | 83 - treebalance-1.2.2/treebalance/R/avgVertDep.R | 10 treebalance-1.2.2/treebalance/R/cherryI.R | 6 treebalance-1.2.2/treebalance/R/colPlaLab.R | 145 - treebalance-1.2.2/treebalance/R/colPlaLab_inv.R | 96 - treebalance-1.2.2/treebalance/R/collessI.R | 15 treebalance-1.2.2/treebalance/R/collesslikeI.R | 241 +-- treebalance-1.2.2/treebalance/R/ewCollessI.R | 96 - treebalance-1.2.2/treebalance/R/furnasI.R | 81 - treebalance-1.2.2/treebalance/R/furnasI_inv.R | 169 +- treebalance-1.2.2/treebalance/R/mWovermD.R | 10 treebalance-1.2.2/treebalance/R/maxDelW.R | 107 - treebalance-1.2.2/treebalance/R/maxDepth.R | 4 treebalance-1.2.2/treebalance/R/maxWidth.R | 4 treebalance-1.2.2/treebalance/R/rQuartetI.R | 201 +- treebalance-1.2.2/treebalance/R/rogersI.R | 110 - treebalance-1.2.2/treebalance/R/sShapeI.R | 79 - treebalance-1.2.2/treebalance/R/sackinI.R | 4 treebalance-1.2.2/treebalance/R/stairs1.R | 78 treebalance-1.2.2/treebalance/R/stairs2.R | 106 - treebalance-1.2.2/treebalance/R/symNodesI.R | 126 - treebalance-1.2.2/treebalance/R/totCophI.R | 82 - treebalance-1.2.2/treebalance/R/totIntPathLen.R | 4 treebalance-1.2.2/treebalance/R/totPathLen.R | 10 treebalance-1.2.2/treebalance/R/varLeafDepI.R | 86 - treebalance-1.2.2/treebalance/R/wedEth-data.R | 6 treebalance-1.2.2/treebalance/R/weighL1dist.R | 100 - treebalance-1.2.2/treebalance/data/wedEth.RData |binary treebalance-1.2.2/treebalance/inst/CITATION | 18 treebalance-1.2.2/treebalance/man/B1I.Rd | 4 treebalance-1.2.2/treebalance/man/B2I.Rd | 15 treebalance-1.2.2/treebalance/man/IbasedI.Rd | 6 treebalance-1.2.2/treebalance/man/areaPerPairI.Rd | 6 treebalance-1.2.2/treebalance/man/auxFuncs.Rd | 30 treebalance-1.2.2/treebalance/man/avgLeafDepI.Rd | 3 treebalance-1.2.2/treebalance/man/avgVertDep.Rd | 8 treebalance-1.2.2/treebalance/man/cherryI.Rd | 4 treebalance-1.2.2/treebalance/man/colPlaLab.Rd | 18 treebalance-1.2.2/treebalance/man/colPlaLab_inv.Rd | 14 treebalance-1.2.2/treebalance/man/collessI.Rd | 10 treebalance-1.2.2/treebalance/man/collesslikeI.Rd | 13 treebalance-1.2.2/treebalance/man/ewCollessI.Rd | 4 treebalance-1.2.2/treebalance/man/furnasI.Rd | 16 treebalance-1.2.2/treebalance/man/furnasI_inv.Rd | 11 treebalance-1.2.2/treebalance/man/mWovermD.Rd | 7 treebalance-1.2.2/treebalance/man/maxDelW.Rd | 10 treebalance-1.2.2/treebalance/man/maxDepth.Rd | 4 treebalance-1.2.2/treebalance/man/maxWidth.Rd | 4 treebalance-1.2.2/treebalance/man/rQuartetI.Rd | 6 treebalance-1.2.2/treebalance/man/rogersI.Rd | 4 treebalance-1.2.2/treebalance/man/sShapeI.Rd | 4 treebalance-1.2.2/treebalance/man/sackinI.Rd | 4 treebalance-1.2.2/treebalance/man/stairs1.Rd | 6 treebalance-1.2.2/treebalance/man/stairs2.Rd | 6 treebalance-1.2.2/treebalance/man/symNodesI.Rd | 6 treebalance-1.2.2/treebalance/man/totCophI.Rd | 6 treebalance-1.2.2/treebalance/man/totIntPathLen.Rd | 4 treebalance-1.2.2/treebalance/man/totPathLen.Rd | 12 treebalance-1.2.2/treebalance/man/varLeafDepI.Rd | 6 treebalance-1.2.2/treebalance/man/wedEth.Rd | 6 treebalance-1.2.2/treebalance/man/weighL1dist.Rd | 6 72 files changed, 2438 insertions(+), 2341 deletions(-)
Title: R Programming: Zero to Pro
Description: This is a companion package of the book "R Programming: Zero to Pro" <https://r02pro.github.io/>. It contains the datasets used in the book and provides interactive exercises corresponding to the book. It covers a wide range of topics including visualization, data transformation, tidying data, data input and output.
Author: Yang Feng [aut, cre],
Jianan Zhu [aut]
Maintainer: Yang Feng <yangfengstat@gmail.com>
Diff between r02pro versions 0.2 dated 2023-05-31 and 0.2.1 dated 2026-10-01
DESCRIPTION | 11 - MD5 | 19 +- NEWS.md |only R/ahp.R | 422 +++++++++++++++++++++++++++++----------------------------- R/gm.R | 10 - R/gm2004.R | 14 - R/sahp.R | 46 +++--- man/ahp.Rd | 422 +++++++++++++++++++++++++++++----------------------------- man/gm.Rd | 10 - man/gm2004.Rd | 14 - man/sahp.Rd | 46 +++--- 11 files changed, 508 insertions(+), 506 deletions(-)
Title: Effect Sizes for Meta-Analysis of Interactions from Factorial
Experiments
Description: Compute effect sizes and their sampling variances from factorial experimental designs. The package supports calculation of simple effects, overall effects, and interaction effects for use in factorial meta-analyses. See Gurevitch et al. (2000) <doi:10.1086/303337>, Morris et al. (2007) <doi:10.1890/06-0442>, Lajeunesse (2011) <doi:10.1890/11-0423.1> and Macartney et al. (2022) <doi:10.1016/j.neubiorev.2022.104554>.
Author: Facundo Decunta [aut, cre] ,
Shinichi Nakagawa [ctb],
Daniel Noble [ctb]
Maintainer: Facundo Decunta <fdecunta@agro.uba.ar>
Diff between minter versions 0.1.1 dated 2026-05-03 and 0.2.0 dated 2026-10-01
minter-0.1.1/minter/build |only minter-0.1.1/minter/inst/doc |only minter-0.1.1/minter/vignettes |only minter-0.2.0/minter/DESCRIPTION | 11 - minter-0.2.0/minter/MD5 | 72 +++----- minter-0.2.0/minter/NEWS.md | 5 minter-0.2.0/minter/R/SMD_wrappers.R | 138 ++++++++++++++-- minter-0.2.0/minter/R/lnCVR_wrappers.R | 42 ++++ minter-0.2.0/minter/R/lnRR_wrappers.R | 53 +++++- minter-0.2.0/minter/R/lnVR_wrappers.R | 46 ++++- minter-0.2.0/minter/R/time_SMD.R | 33 +++ minter-0.2.0/minter/R/time_lnCVR.R | 24 ++ minter-0.2.0/minter/R/time_lnRR.R | 16 + minter-0.2.0/minter/R/time_lnVR.R | 5 minter-0.2.0/minter/R/utils.R | 39 ++-- minter-0.2.0/minter/README.md | 68 ++++--- minter-0.2.0/minter/inst/extdata |only minter-0.2.0/minter/man/SMD_ind.Rd | 25 ++ minter-0.2.0/minter/man/SMD_inter.Rd | 39 ++++ minter-0.2.0/minter/man/SMD_main.Rd | 41 ++++ minter-0.2.0/minter/man/dot-interaction_SMD.Rd | 39 ++++ minter-0.2.0/minter/man/dot-lnVR_args.Rd | 4 minter-0.2.0/minter/man/dot-main_SMD.Rd | 41 ++++ minter-0.2.0/minter/man/dot-simple_SMD.Rd | 25 ++ minter-0.2.0/minter/man/lnCVR_ind.Rd | 14 + minter-0.2.0/minter/man/lnCVR_inter.Rd | 14 + minter-0.2.0/minter/man/lnCVR_main.Rd | 14 + minter-0.2.0/minter/man/lnRR_ind.Rd | 9 - minter-0.2.0/minter/man/lnRR_inter.Rd | 12 + minter-0.2.0/minter/man/lnRR_main.Rd | 28 +++ minter-0.2.0/minter/man/lnVR_ind.Rd | 10 + minter-0.2.0/minter/man/lnVR_inter.Rd | 15 + minter-0.2.0/minter/man/lnVR_main.Rd | 19 ++ minter-0.2.0/minter/man/time_SMD.Rd | 16 + minter-0.2.0/minter/man/time_lnCVR.Rd | 10 + minter-0.2.0/minter/man/time_lnRR.Rd | 17 + minter-0.2.0/minter/man/time_lnVR.Rd | 7 minter-0.2.0/minter/tests/testthat/test-lnRR_wrappers.R | 24 ++ 38 files changed, 835 insertions(+), 140 deletions(-)
Title: Approximate Bayesian Latent Variable Analysis
Description: Implements approximate Bayesian inference for Structural
Equation Models (SEM) using a custom adaptation of the Integrated
Nested Laplace Approximation (Rue et al., 2009)
<doi:10.1111/j.1467-9868.2008.00700.x> as described in Jamil and Rue
(2026a) <doi:10.48550/arXiv.2603.25690>. Provides a computationally
efficient alternative to Markov Chain Monte Carlo (MCMC) for Bayesian
estimation, allowing users to fit latent variable models using the
'lavaan' syntax. See also the companion paper on implementation and
workflows, Jamil and Rue (2026b) <doi:10.48550/arXiv.2604.00671>.
Author: Haziq Jamil [aut, cre, cph] ,
Havard Rue [ctb] ,
Alvin Bong [ctb]
Maintainer: Haziq Jamil <haziq.jamil@gmail.com>
Diff between INLAvaan versions 0.3.1 dated 2026-07-21 and 0.3.2 dated 2026-10-01
INLAvaan-0.3.1/INLAvaan/R/lavaan-argnames.R |only INLAvaan-0.3.2/INLAvaan/DESCRIPTION | 12 INLAvaan-0.3.2/INLAvaan/MD5 | 161 +- INLAvaan-0.3.2/INLAvaan/NAMESPACE | 135 +- INLAvaan-0.3.2/INLAvaan/NEWS.md | 274 ++++ INLAvaan-0.3.2/INLAvaan/R/INLAvaan-package.R | 5 INLAvaan-0.3.2/INLAvaan/R/compare.R | 109 + INLAvaan-0.3.2/INLAvaan/R/create_lav_from_inlavaan_internal.R | 19 INLAvaan-0.3.2/INLAvaan/R/gauss-hermite.R |only INLAvaan-0.3.2/INLAvaan/R/inlavaan.R | 629 +++++++--- INLAvaan-0.3.2/INLAvaan/R/lavaan-unexported.R | 128 -- INLAvaan-0.3.2/INLAvaan/R/log-likelihood-and-grad.R | 6 INLAvaan-0.3.2/INLAvaan/R/loo.R | 517 ++++---- INLAvaan-0.3.2/INLAvaan/R/method-deviance.R | 25 INLAvaan-0.3.2/INLAvaan/R/method-diagnostics.R | 204 ++- INLAvaan-0.3.2/INLAvaan/R/method-fitmeasures.R | 385 ++++-- INLAvaan-0.3.2/INLAvaan/R/method-loglik.R | 48 INLAvaan-0.3.2/INLAvaan/R/method-loo.R | 417 +++--- INLAvaan-0.3.2/INLAvaan/R/method-others.R | 11 INLAvaan-0.3.2/INLAvaan/R/method-predict.R | 50 INLAvaan-0.3.2/INLAvaan/R/method-sampling.R | 392 ++++-- INLAvaan-0.3.2/INLAvaan/R/method-show.R | 6 INLAvaan-0.3.2/INLAvaan/R/method-summary.R | 19 INLAvaan-0.3.2/INLAvaan/R/method-timing.R | 62 INLAvaan-0.3.2/INLAvaan/R/method-waic.R | 175 +- INLAvaan-0.3.2/INLAvaan/R/posterior-marginals.R | 11 INLAvaan-0.3.2/INLAvaan/R/posterior-sampling.R | 53 INLAvaan-0.3.2/INLAvaan/R/skew-normal.R | 64 + INLAvaan-0.3.2/INLAvaan/R/sobol.R | 18 INLAvaan-0.3.2/INLAvaan/R/standardisedsolution.R | 24 INLAvaan-0.3.2/INLAvaan/R/sysdata.rda |binary INLAvaan-0.3.2/INLAvaan/R/utils-optim.R | 83 + INLAvaan-0.3.2/INLAvaan/R/utils-visual_debug.R | 155 +- INLAvaan-0.3.2/INLAvaan/R/utils.R | 174 ++ INLAvaan-0.3.2/INLAvaan/R/zzz.R | 32 INLAvaan-0.3.2/INLAvaan/README.md | 39 INLAvaan-0.3.2/INLAvaan/build/partial.rdb |binary INLAvaan-0.3.2/INLAvaan/build/vignette.rds |binary INLAvaan-0.3.2/INLAvaan/demo/00Index | 1 INLAvaan-0.3.2/INLAvaan/demo/twolevel.R |only INLAvaan-0.3.2/INLAvaan/inst/doc/INLAvaan.html | 222 +-- INLAvaan-0.3.2/INLAvaan/inst/doc/INLAvaan.qmd | 8 INLAvaan-0.3.2/INLAvaan/inst/doc/mediation.html | 23 INLAvaan-0.3.2/INLAvaan/inst/examples/ex-loo.R | 8 INLAvaan-0.3.2/INLAvaan/man/INLAvaan-class.Rd | 4 INLAvaan-0.3.2/INLAvaan/man/acfa.Rd | 89 + INLAvaan-0.3.2/INLAvaan/man/agrowth.Rd | 89 + INLAvaan-0.3.2/INLAvaan/man/asem.Rd | 89 + INLAvaan-0.3.2/INLAvaan/man/bfit_indices.Rd | 11 INLAvaan-0.3.2/INLAvaan/man/compare.Rd | 35 INLAvaan-0.3.2/INLAvaan/man/deviance.Rd | 9 INLAvaan-0.3.2/INLAvaan/man/diagnostics.Rd | 64 - INLAvaan-0.3.2/INLAvaan/man/figures/README-fig-compare-poldem-1.png |binary INLAvaan-0.3.2/INLAvaan/man/fitmeasures.Rd | 27 INLAvaan-0.3.2/INLAvaan/man/get_inlavaan_internal.Rd | 4 INLAvaan-0.3.2/INLAvaan/man/inlavaan.Rd | 101 + INLAvaan-0.3.2/INLAvaan/man/logLik.Rd | 4 INLAvaan-0.3.2/INLAvaan/man/loo.Rd | 276 ++-- INLAvaan-0.3.2/INLAvaan/man/sampling.Rd | 16 INLAvaan-0.3.2/INLAvaan/man/timing.Rd | 15 INLAvaan-0.3.2/INLAvaan/man/waic.Rd | 120 + INLAvaan-0.3.2/INLAvaan/tests/testthat/test-compare.R | 138 +- INLAvaan-0.3.2/INLAvaan/tests/testthat/test-diagnostics.R | 75 + INLAvaan-0.3.2/INLAvaan/tests/testthat/test-fast_jacobian.R | 1 INLAvaan-0.3.2/INLAvaan/tests/testthat/test-fitmeasures.R | 151 ++ INLAvaan-0.3.2/INLAvaan/tests/testthat/test-loo-existence.R |only INLAvaan-0.3.2/INLAvaan/tests/testthat/test-loo-fixedx.R | 20 INLAvaan-0.3.2/INLAvaan/tests/testthat/test-loo-loco.R | 126 +- INLAvaan-0.3.2/INLAvaan/tests/testthat/test-loo-loso.R | 221 ++- INLAvaan-0.3.2/INLAvaan/tests/testthat/test-loo-missing-2l.R | 42 INLAvaan-0.3.2/INLAvaan/tests/testthat/test-loo-missing.R | 64 - INLAvaan-0.3.2/INLAvaan/tests/testthat/test-loo-multigroup.R | 41 INLAvaan-0.3.2/INLAvaan/tests/testthat/test-method-update.R | 27 INLAvaan-0.3.2/INLAvaan/tests/testthat/test-missing-fiml.R |only INLAvaan-0.3.2/INLAvaan/tests/testthat/test-multigroup.R | 7 INLAvaan-0.3.2/INLAvaan/tests/testthat/test-multilevel.R | 34 INLAvaan-0.3.2/INLAvaan/tests/testthat/test-plot.R | 24 INLAvaan-0.3.2/INLAvaan/tests/testthat/test-predict.R | 34 INLAvaan-0.3.2/INLAvaan/tests/testthat/test-sampling.R | 140 ++ INLAvaan-0.3.2/INLAvaan/tests/testthat/test-sem.R | 48 INLAvaan-0.3.2/INLAvaan/tests/testthat/test-skew_normal.R | 72 + INLAvaan-0.3.2/INLAvaan/tests/testthat/test-sobol.R | 48 INLAvaan-0.3.2/INLAvaan/tests/testthat/test-test-argument.R |only INLAvaan-0.3.2/INLAvaan/tests/testthat/test-vb-correction.R |only INLAvaan-0.3.2/INLAvaan/vignettes/INLAvaan.qmd | 8 85 files changed, 4878 insertions(+), 2100 deletions(-)
Title: Data Frame Workflows for 'Microsoft Foundry'
Description: Work with 'Microsoft Foundry' from data-frame-oriented
'R' workflows. Provides data-frame-returning helpers for 'Azure AI Content
Safety', 'Azure OpenAI' Responses API calls, strict structured extraction,
vector representations, files, batch jobs, audio, media, and chat
completions. Supports
research annotation, safety gates, semantic search, and 'tidymodels'
recipes. Helps teams keep model workflows inside their 'Azure' environment
while preserving analyzable outputs. See the Microsoft Foundry REST API
documentation <https://learn.microsoft.com/rest/api/microsoft-foundry/> and
Azure AI Content Safety documentation
<https://learn.microsoft.com/azure/ai-services/content-safety/>.
Author: Alex Farach [aut, cre, cph]
Maintainer: Alex Farach <alexfarach@microsoft.com>
Diff between foundryR versions 0.1.0 dated 2026-09-24 and 1.0.0 dated 2026-10-01
foundryR-0.1.0/foundryR/inst/doc/foundryr-vs-ellmer.R |only foundryR-0.1.0/foundryR/inst/doc/foundryr-vs-ellmer.Rmd |only foundryR-0.1.0/foundryR/inst/doc/foundryr-vs-ellmer.html |only foundryR-0.1.0/foundryR/man/foundry_video_download.Rd |only foundryR-0.1.0/foundryR/man/foundry_video_get.Rd |only foundryR-0.1.0/foundryR/man/foundry_video_job_create.Rd |only foundryR-0.1.0/foundryR/man/foundry_video_job_delete.Rd |only foundryR-0.1.0/foundryR/man/foundry_video_job_get.Rd |only foundryR-0.1.0/foundryR/man/foundry_video_jobs.Rd |only foundryR-0.1.0/foundryR/tests/testthat/test-conversations-vector-validation.R |only foundryR-0.1.0/foundryR/tests/testthat/test-models-files-batches.R |only foundryR-0.1.0/foundryR/vignettes/foundryr-vs-ellmer.Rmd |only foundryR-1.0.0/foundryR/DESCRIPTION | 13 foundryR-1.0.0/foundryR/MD5 | 346 foundryR-1.0.0/foundryR/NAMESPACE | 5 foundryR-1.0.0/foundryR/NEWS.md | 145 foundryR-1.0.0/foundryR/R/agents.R | 4 foundryR-1.0.0/foundryR/R/audio.R | 250 foundryR-1.0.0/foundryR/R/auth.R | 44 foundryR-1.0.0/foundryR/R/batches.R | 198 foundryR-1.0.0/foundryR/R/chat.R | 4 foundryR-1.0.0/foundryR/R/check.R | 37 foundryR-1.0.0/foundryR/R/codebook.R | 124 foundryR-1.0.0/foundryR/R/config.R | 12 foundryR-1.0.0/foundryR/R/content-safety-extra.R | 16 foundryR-1.0.0/foundryR/R/content-safety-preview.R | 9 foundryR-1.0.0/foundryR/R/conversations.R | 104 foundryR-1.0.0/foundryR/R/embed-batch.R | 53 foundryR-1.0.0/foundryR/R/embed.R | 8 foundryR-1.0.0/foundryR/R/evals.R | 654 + foundryR-1.0.0/foundryR/R/evaluate.R |only foundryR-1.0.0/foundryR/R/files.R | 48 foundryR-1.0.0/foundryR/R/globals.R | 1 foundryR-1.0.0/foundryR/R/groundedness.R | 105 foundryR-1.0.0/foundryR/R/image.R | 147 foundryR-1.0.0/foundryR/R/models.R | 19 foundryR-1.0.0/foundryR/R/moderate.R | 115 foundryR-1.0.0/foundryR/R/responses.R | 298 foundryR-1.0.0/foundryR/R/route.R |only foundryR-1.0.0/foundryR/R/shield.R | 82 foundryR-1.0.0/foundryR/R/tidymodels.R | 60 foundryR-1.0.0/foundryR/R/utils.R | 253 foundryR-1.0.0/foundryR/R/validation.R | 166 foundryR-1.0.0/foundryR/R/vector-stores.R | 127 foundryR-1.0.0/foundryR/R/video.R | 374 - foundryR-1.0.0/foundryR/README.md | 450 - foundryR-1.0.0/foundryR/build/vignette.rds |binary foundryR-1.0.0/foundryR/inst/doc/annotation-workflow.R | 362 foundryR-1.0.0/foundryR/inst/doc/annotation-workflow.Rmd | 439 - foundryR-1.0.0/foundryR/inst/doc/annotation-workflow.html | 1022 -- foundryR-1.0.0/foundryR/inst/doc/api-support.Rmd | 115 foundryR-1.0.0/foundryR/inst/doc/api-support.html | 298 foundryR-1.0.0/foundryR/inst/doc/audio.R | 152 foundryR-1.0.0/foundryR/inst/doc/audio.Rmd | 245 foundryR-1.0.0/foundryR/inst/doc/audio.html | 296 foundryR-1.0.0/foundryR/inst/doc/content-safety.R | 364 foundryR-1.0.0/foundryR/inst/doc/content-safety.Rmd | 570 - foundryR-1.0.0/foundryR/inst/doc/content-safety.html | 1182 --- foundryR-1.0.0/foundryR/inst/doc/embeddings.R | 309 foundryR-1.0.0/foundryR/inst/doc/embeddings.Rmd | 409 - foundryR-1.0.0/foundryR/inst/doc/embeddings.html | 461 - foundryR-1.0.0/foundryR/inst/doc/evaluation-analysis.R |only foundryR-1.0.0/foundryR/inst/doc/evaluation-analysis.Rmd |only foundryR-1.0.0/foundryR/inst/doc/evaluation-analysis.html |only foundryR-1.0.0/foundryR/inst/doc/evaluations.R |only foundryR-1.0.0/foundryR/inst/doc/evaluations.Rmd |only foundryR-1.0.0/foundryR/inst/doc/evaluations.html |only foundryR-1.0.0/foundryR/inst/doc/files-batches.R | 184 foundryR-1.0.0/foundryR/inst/doc/files-batches.Rmd | 239 foundryR-1.0.0/foundryR/inst/doc/files-batches.html | 358 foundryR-1.0.0/foundryR/inst/doc/getting-started.R | 131 foundryR-1.0.0/foundryR/inst/doc/getting-started.Rmd | 289 foundryR-1.0.0/foundryR/inst/doc/getting-started.html | 442 - foundryR-1.0.0/foundryR/inst/doc/media-generation.R | 97 foundryR-1.0.0/foundryR/inst/doc/media-generation.Rmd | 143 foundryR-1.0.0/foundryR/inst/doc/media-generation.html | 156 foundryR-1.0.0/foundryR/inst/doc/responses-api.R | 156 foundryR-1.0.0/foundryR/inst/doc/responses-api.Rmd | 241 foundryR-1.0.0/foundryR/inst/doc/responses-api.html | 458 - foundryR-1.0.0/foundryR/inst/doc/tidymodels.R | 279 foundryR-1.0.0/foundryR/inst/doc/tidymodels.Rmd | 414 - foundryR-1.0.0/foundryR/inst/doc/tidymodels.html | 3725 ---------- foundryR-1.0.0/foundryR/inst/httptest2/start-vignette.R | 63 foundryR-1.0.0/foundryR/man/codebook_schema_helpers.Rd | 18 foundryR-1.0.0/foundryR/man/figures/logo.svg | 33 foundryR-1.0.0/foundryR/man/foundryR-package.Rd | 2 foundryR-1.0.0/foundryR/man/foundry_agent_delete.Rd | 2 foundryR-1.0.0/foundryR/man/foundry_agent_reference.Rd | 2 foundryR-1.0.0/foundryR/man/foundry_agreement.Rd | 17 foundryR-1.0.0/foundryR/man/foundry_blocklists.Rd | 6 foundryR-1.0.0/foundryR/man/foundry_build_request.Rd | 4 foundryR-1.0.0/foundryR/man/foundry_build_v1_request.Rd | 2 foundryR-1.0.0/foundryR/man/foundry_chat.Rd | 4 foundryR-1.0.0/foundryR/man/foundry_check_setup.Rd | 8 foundryR-1.0.0/foundryR/man/foundry_consistency.Rd | 10 foundryR-1.0.0/foundryR/man/foundry_conversations.Rd | 66 foundryR-1.0.0/foundryR/man/foundry_embed.Rd | 4 foundryR-1.0.0/foundryR/man/foundry_embed_batch.Rd | 5 foundryR-1.0.0/foundryR/man/foundry_error_body.Rd | 7 foundryR-1.0.0/foundryR/man/foundry_eval_create.Rd | 22 foundryR-1.0.0/foundryR/man/foundry_eval_data_config.Rd | 16 foundryR-1.0.0/foundryR/man/foundry_eval_delete.Rd | 28 foundryR-1.0.0/foundryR/man/foundry_eval_get.Rd | 22 foundryR-1.0.0/foundryR/man/foundry_eval_run_cancel.Rd | 22 foundryR-1.0.0/foundryR/man/foundry_eval_run_create.Rd | 25 foundryR-1.0.0/foundryR/man/foundry_eval_run_data.Rd | 53 foundryR-1.0.0/foundryR/man/foundry_eval_run_get.Rd | 22 foundryR-1.0.0/foundryR/man/foundry_eval_run_output_items.Rd | 36 foundryR-1.0.0/foundryR/man/foundry_eval_run_results.Rd |only foundryR-1.0.0/foundryR/man/foundry_eval_run_wait.Rd |only foundryR-1.0.0/foundryR/man/foundry_eval_runs.Rd | 22 foundryR-1.0.0/foundryR/man/foundry_evals.Rd | 22 foundryR-1.0.0/foundryR/man/foundry_evaluate.Rd |only foundryR-1.0.0/foundryR/man/foundry_extract.Rd | 7 foundryR-1.0.0/foundryR/man/foundry_extract_batch_results.Rd |only foundryR-1.0.0/foundryR/man/foundry_file_delete.Rd | 6 foundryR-1.0.0/foundryR/man/foundry_file_download.Rd | 6 foundryR-1.0.0/foundryR/man/foundry_file_get.Rd | 6 foundryR-1.0.0/foundryR/man/foundry_file_upload.Rd | 18 foundryR-1.0.0/foundryR/man/foundry_files.Rd | 6 foundryR-1.0.0/foundryR/man/foundry_get_endpoint.Rd | 2 foundryR-1.0.0/foundryR/man/foundry_get_key.Rd | 2 foundryR-1.0.0/foundryR/man/foundry_get_project_endpoint.Rd | 2 foundryR-1.0.0/foundryR/man/foundry_get_token.Rd | 2 foundryR-1.0.0/foundryR/man/foundry_grader_azure_ai.Rd | 14 foundryR-1.0.0/foundryR/man/foundry_groundedness.Rd | 18 foundryR-1.0.0/foundryR/man/foundry_image.Rd | 98 foundryR-1.0.0/foundryR/man/foundry_llm_resource.Rd | 10 foundryR-1.0.0/foundryR/man/foundry_models.Rd | 19 foundryR-1.0.0/foundryR/man/foundry_moderate.Rd | 19 foundryR-1.0.0/foundryR/man/foundry_moderate_image.Rd | 3 foundryR-1.0.0/foundryR/man/foundry_protected_code.Rd | 4 foundryR-1.0.0/foundryR/man/foundry_provenance.Rd | 4 foundryR-1.0.0/foundryR/man/foundry_response.Rd | 6 foundryR-1.0.0/foundryR/man/foundry_save_image.Rd | 36 foundryR-1.0.0/foundryR/man/foundry_set_endpoint.Rd | 4 foundryR-1.0.0/foundryR/man/foundry_set_image_endpoint.Rd | 8 foundryR-1.0.0/foundryR/man/foundry_set_image_key.Rd | 4 foundryR-1.0.0/foundryR/man/foundry_set_key.Rd | 4 foundryR-1.0.0/foundryR/man/foundry_set_project_endpoint.Rd | 4 foundryR-1.0.0/foundryR/man/foundry_set_route.Rd |only foundryR-1.0.0/foundryR/man/foundry_set_token.Rd | 2 foundryR-1.0.0/foundryR/man/foundry_shield.Rd | 7 foundryR-1.0.0/foundryR/man/foundry_similarity.Rd | 4 foundryR-1.0.0/foundryR/man/foundry_speak.Rd | 9 foundryR-1.0.0/foundryR/man/foundry_transcribe.Rd | 56 foundryR-1.0.0/foundryR/man/foundry_translate_audio.Rd | 37 foundryR-1.0.0/foundryR/man/foundry_usage.Rd | 6 foundryR-1.0.0/foundryR/man/foundry_vector_stores.Rd | 61 foundryR-1.0.0/foundryR/man/foundry_video_defunct.Rd |only foundryR-1.0.0/foundryR/man/foundry_web_search.Rd | 2 foundryR-1.0.0/foundryR/man/parse_shield_response.Rd | 9 foundryR-1.0.0/foundryR/man/step_foundry_embed.Rd | 4 foundryR-1.0.0/foundryR/tests/testthat/_snaps/codebook.md | 8 foundryR-1.0.0/foundryR/tests/testthat/helper.R | 12 foundryR-1.0.0/foundryR/tests/testthat/test-agents.R | 6 foundryR-1.0.0/foundryR/tests/testthat/test-audio.R | 263 foundryR-1.0.0/foundryR/tests/testthat/test-auth.R | 23 foundryR-1.0.0/foundryR/tests/testthat/test-batches.R |only foundryR-1.0.0/foundryR/tests/testthat/test-codebook.R | 75 foundryR-1.0.0/foundryR/tests/testthat/test-content-safety-extra.R | 51 foundryR-1.0.0/foundryR/tests/testthat/test-content-safety-preview.R | 25 foundryR-1.0.0/foundryR/tests/testthat/test-conversations.R |only foundryR-1.0.0/foundryR/tests/testthat/test-doc-hooks.R | 44 foundryR-1.0.0/foundryR/tests/testthat/test-embed-batch.R | 65 foundryR-1.0.0/foundryR/tests/testthat/test-embed.R | 27 foundryR-1.0.0/foundryR/tests/testthat/test-errors.R |only foundryR-1.0.0/foundryR/tests/testthat/test-evals.R | 176 foundryR-1.0.0/foundryR/tests/testthat/test-evaluate.R |only foundryR-1.0.0/foundryR/tests/testthat/test-extract.R |only foundryR-1.0.0/foundryR/tests/testthat/test-files.R |only foundryR-1.0.0/foundryR/tests/testthat/test-groundedness.R | 157 foundryR-1.0.0/foundryR/tests/testthat/test-image.R | 22 foundryR-1.0.0/foundryR/tests/testthat/test-models.R |only foundryR-1.0.0/foundryR/tests/testthat/test-moderate.R | 74 foundryR-1.0.0/foundryR/tests/testthat/test-recipe.R | 114 foundryR-1.0.0/foundryR/tests/testthat/test-route.R |only foundryR-1.0.0/foundryR/tests/testthat/test-shield.R | 43 foundryR-1.0.0/foundryR/tests/testthat/test-validation.R |only foundryR-1.0.0/foundryR/tests/testthat/test-vector-stores.R |only foundryR-1.0.0/foundryR/tests/testthat/test-video.R | 129 foundryR-1.0.0/foundryR/vignettes/annotation-workflow.Rmd | 439 - foundryR-1.0.0/foundryR/vignettes/api-support.Rmd | 115 foundryR-1.0.0/foundryR/vignettes/audio.Rmd | 245 foundryR-1.0.0/foundryR/vignettes/content-safety.Rmd | 570 - foundryR-1.0.0/foundryR/vignettes/embeddings.Rmd | 409 - foundryR-1.0.0/foundryR/vignettes/evaluation-analysis.Rmd |only foundryR-1.0.0/foundryR/vignettes/evaluations.Rmd |only foundryR-1.0.0/foundryR/vignettes/files-batches.Rmd | 239 foundryR-1.0.0/foundryR/vignettes/getting-started.Rmd | 289 foundryR-1.0.0/foundryR/vignettes/media-generation.Rmd | 143 foundryR-1.0.0/foundryR/vignettes/responses-api.Rmd | 241 foundryR-1.0.0/foundryR/vignettes/tidymodels.Rmd | 414 - 193 files changed, 10945 insertions(+), 12332 deletions(-)
Title: 'Circuitscape' and 'Omniscape' Connectivity Analysis via 'Julia'
Description: Provides an R-native interface to the 'Circuitscape.jl' and
'Omniscape.jl' 'Julia' packages for landscape connectivity modeling using
circuit theory. Users work entirely in R with familiar objects
(SpatRaster, file paths) while 'Julia' handles computation invisibly.
Supports all four 'Circuitscape' modes (pairwise, one-to-all, all-to-one,
advanced) and 'Omniscape' moving-window analysis. Methods are described in
McRae (2006) <doi:10.1111/j.0014-3820.2006.tb00500.x> and
Landau et al. (2021) <doi:10.21105/joss.02829>.
Author: Matthew Kling [aut, cre, cph]
Maintainer: Matthew Kling <mattkling@berkeley.edu>
Diff between circuitscaper versions 0.1.0 dated 2026-04-09 and 0.1.1 dated 2026-10-01
DESCRIPTION | 8 - MD5 | 61 +++++++------ NAMESPACE | 2 NEWS.md | 47 ++++++++++ R/config.R | 67 ++++++++++++--- R/cs-advanced.R | 3 R/cs-pairwise.R | 3 R/os-condition.R |only R/os-run.R | 76 ++++++++++------- R/setup.R | 14 +-- R/utils.R | 74 ++++++++++++++++ README.md | 30 +++--- build/partial.rdb |binary build/vignette.rds |binary inst/doc/getting-started.R | 14 +++ inst/doc/getting-started.Rmd | 35 +++++++ inst/doc/getting-started.html | 53 +++++++++--- man/circuitscaper-package.Rd | 5 + man/cs_advanced.Rd | 12 +- man/cs_all_to_one.Rd | 10 +- man/cs_install_julia.Rd | 6 - man/cs_julia_available.Rd | 7 - man/cs_one_to_all.Rd | 10 +- man/cs_pairwise.Rd | 10 +- man/cs_setup.Rd | 2 man/figures/README-example-1.png |binary man/figures/README-example-2.png |binary man/os_condition.Rd |only man/os_run.Rd | 41 +++++---- tests/testthat/test-config.R | 104 ++++++++++++++++++++++- tests/testthat/test-integration.R | 162 +++++++++++++++++++++++++++++++++++++ tests/testthat/test-os-condition.R |only vignettes/getting-started.Rmd | 35 +++++++ 33 files changed, 733 insertions(+), 158 deletions(-)
Title: Evaluate Structural Equation Model Identification Rules
Description: Evaluates selected necessary and sufficient identification
conditions in structural equation models (SEMs), including
latent-variable scaling constraints. Output reports rule
status and applicability and provides diagnostic messages to
support model specification and respecification. The package is
intended as a diagnostic aid and does not implement a universal
identification algorithm. For more details, see Bollen
(2026, ISBN:978-1009312820).
Author: Zach Vig [aut, cre, cph]
Maintainer: Zach Vig <zachvig@rocketmail.com>
Diff between semrulesid versions 0.4.1 dated 2026-09-26 and 0.4.2 dated 2026-10-01
DESCRIPTION | 6 +- MD5 | 20 ++++----- NEWS.md | 4 + R/cfa_rules.R | 39 +++++++++-------- R/print.R | 7 +-- R/reg_rules.R | 45 ++++++++++++-------- R/rule_utils.R | 21 ++++++++- R/sem_rules.R | 63 ++++++++++++++++------------ inst/doc/semrulesid-quickstart.html | 60 ++++++++++++++++++++------- tests/testthat/test-rules_output.R | 17 +++++++ tests/testthat/test-rules_print.R | 80 ++++++++++++++++++++++++++++++++++-- 11 files changed, 263 insertions(+), 99 deletions(-)
Title: Modular Toolkit for PageRank Calculation
Description: Provides a set of modular, pipeable functions to calculate PageRank scores from edge lists and redirect reports, common in SEO analysis. Functions handle URL cleaning, redirect resolution, edge deduplication, isolate handling, and PageRank computation using base R for data manipulation and 'igraph' for core PageRank calculation.
Author: Bart Turczynski [aut, cre]
Maintainer: Bart Turczynski <bartek@turczynski.pl>
Diff between pagerankr versions 0.1.0 dated 2026-09-28 and 0.1.1 dated 2026-10-01
DESCRIPTION | 12 +- MD5 | 94 ++++++++-------- NAMESPACE | 2 NEWS.md | 131 ++++++++++++++++++++++ R/analyze_pagerank_grid.R | 4 R/audit_canonicals.R | 2 R/audit_redirects.R | 2 R/auto_grid.R | 4 R/compute_pagerank.R | 2 R/hits.R | 7 - R/pagerank.R | 2 R/pagerank_metrics.R | 2 R/resolve_redirects.R | 10 - R/salsa.R | 7 - R/screaming_frog_contract.R | 4 R/simulate_changes.R | 2 R/smooth_transitions.R | 4 R/transform_weights.R | 2 R/validate_edge_weights.R | 2 README.md | 16 ++ inst/WORDLIST | 5 inst/doc/boilerplate.html | 4 inst/doc/case-study.html | 4 inst/doc/pagerankr-usage.R | 2 inst/doc/pagerankr-usage.Rmd | 2 inst/doc/pagerankr-usage.html | 6 - inst/doc/presets.html | 4 inst/doc/topic_feeder_pagerank.html | 4 inst/doc/trustrank.html | 4 inst/extdata/README.md | 4 man/analyze_pagerank_grid.Rd | 7 + man/audit_canonicals.Rd | 2 man/audit_redirects.Rd | 2 man/compute_hits.Rd | 2 man/compute_salsa.Rd | 2 man/hits.Rd | 4 man/pagerank.Rd | 2 man/pagerankr-package.Rd | 3 man/salsa.Rd | 4 man/sf_normalize_position.Rd | 3 man/simulate_changes.Rd | 2 man/smooth_transitions.Rd | 2 man/transform_weights.Rd | 2 tests/testthat/helper-security.R |only tests/testthat/test-aliases.R |only tests/testthat/test-canonicalization.R | 43 +++++++ tests/testthat/test-pagerank_metrics.R | 2 tests/testthat/test-security.R | 191 ++++++++++++++++++++++++++++++--- vignettes/pagerankr-usage.Rmd | 2 49 files changed, 493 insertions(+), 132 deletions(-)
Title: NanoString Quality Control Dashboard
Description: NanoString nCounter data are gene expression assays
where there is no need for the use of enzymes or amplification
protocols and work with fluorescent barcodes (Geiss et al. (2018)
<doi:10.1038/nbt1385>). Each barcode is assigned a
messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its
target can be counted. As a result each count of a specific barcode
represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString
quality Control dasHbOard) is able to analyse the exported NanoString
nCounter data and facilitates the user in performing a quality
control. 'NACHO' does this by visualising quality control metrics,
expression of control genes, principal components and sample specific
size factors in an interactive web application.
Author: Mickael Canouil [aut, cre] ,
Roderick Slieker [aut] ,
Gerard Bouland [aut]
Maintainer: Mickael Canouil <pro@mickael.canouil.dev>
Diff between NACHO versions 2.0.7 dated 2026-09-27 and 2.0.8 dated 2026-10-01
DESCRIPTION | 6 +-- MD5 | 22 +++++------ NEWS.md | 10 +++++ R/autoplot.R | 6 ++- inst/app/app.R | 19 ++-------- inst/app/utils.R | 17 +++++++++ inst/app/www/about-hgf.md | 2 - inst/app/www/about-pf.md | 2 - inst/doc/NACHO-analysis.html | 48 ++++++++++++------------- inst/doc/NACHO.html | 76 +++++++++++++++++++---------------------- tests/testthat/test-app.R | 48 +++++++++++++++++++++++++ tests/testthat/test-autoplot.R | 6 +++ 12 files changed, 165 insertions(+), 97 deletions(-)
Title: Clean Class-Less 'R Markdown' HTML Documents
Description: A collection of clean 'R Markdown' HTML document templates
using classy-looking classless CSS styles. These documents use a
minimal set of dependencies but still look great, making them suitable
for use a package vignettes or for sharing results via email.
Author: Garrick Aden-Buie [aut, cre, cph] ,
Igor Adamenko [ctb, cph] ,
Alvaro Montoro [ctb, cph] ,
Vladimir Carrer [ctb, cph] ,
Ty Bolt [ctb, cph] ,
Ruan Martinelli [ctb, cph] ,
Tran Ngoc Tuan Anh [ctb, cph] ,
Marco Pontili [ctb, cph] ,
Emanuel Regnath [ctb, [...truncated...]
Maintainer: Garrick Aden-Buie <garrick@adenbuie.com>
Diff between cleanrmd versions 0.1.1 dated 2023-05-19 and 0.2.0 dated 2026-10-01
cleanrmd-0.1.1/cleanrmd/tests/manual |only cleanrmd-0.2.0/cleanrmd/DESCRIPTION | 30 cleanrmd-0.2.0/cleanrmd/LICENSE | 2 cleanrmd-0.2.0/cleanrmd/MD5 | 103 cleanrmd-0.2.0/cleanrmd/NEWS.md | 37 cleanrmd-0.2.0/cleanrmd/R/highlight.R | 27 cleanrmd-0.2.0/cleanrmd/R/html_document_clean.R | 5 cleanrmd-0.2.0/cleanrmd/R/sysdata.rda |binary cleanrmd-0.2.0/cleanrmd/R/themes.R | 37 cleanrmd-0.2.0/cleanrmd/README.md | 33 cleanrmd-0.2.0/cleanrmd/inst/resources/NOTICE | 120 cleanrmd-0.2.0/cleanrmd/inst/resources/axist/axist.css | 606 ++- cleanrmd-0.2.0/cleanrmd/inst/resources/bamboo/bamboo.css | 2 cleanrmd-0.2.0/cleanrmd/inst/resources/basic.css |only cleanrmd-0.2.0/cleanrmd/inst/resources/bolt.css |only cleanrmd-0.2.0/cleanrmd/inst/resources/bullframe/bullframe-classless.min.css.map | 2 cleanrmd-0.2.0/cleanrmd/inst/resources/bullframe/bullframe.css | 4 cleanrmd-0.2.0/cleanrmd/inst/resources/classlesscss |only cleanrmd-0.2.0/cleanrmd/inst/resources/holiday/holiday.css | 168 - cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/LM-bold-italic.ttf |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/LM-bold-italic.woff |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/LM-bold-italic.woff2 |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/LM-bold.ttf |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/LM-bold.woff |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/LM-bold.woff2 |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/LM-italic.ttf |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/LM-italic.woff |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/LM-italic.woff2 |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/LM-regular.ttf |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/LM-regular.woff |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/LM-regular.woff2 |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/Libertinus-bold-italic.woff2 |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/Libertinus-bold.woff2 |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/Libertinus-italic.woff2 |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/Libertinus-regular.woff2 |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/Libertinus-semibold-italic.woff2 |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/fonts/Libertinus-semibold.woff2 |binary cleanrmd-0.2.0/cleanrmd/inst/resources/latex.css/latex.css | 187 + cleanrmd-0.2.0/cleanrmd/inst/resources/marx/marx.css | 4 cleanrmd-0.2.0/cleanrmd/inst/resources/mvp.css |only cleanrmd-0.2.0/cleanrmd/inst/resources/neat.css |only cleanrmd-0.2.0/cleanrmd/inst/resources/picocss/pico.css | 7 cleanrmd-0.2.0/cleanrmd/inst/resources/sakura-vader/sakura-vader.css | 37 cleanrmd-0.2.0/cleanrmd/inst/resources/sakura/sakura.css | 37 cleanrmd-0.2.0/cleanrmd/inst/resources/simplecss/simple.css | 2 cleanrmd-0.2.0/cleanrmd/inst/resources/theme-picker-init.js |only cleanrmd-0.2.0/cleanrmd/inst/resources/theme-picker.js | 109 cleanrmd-0.2.0/cleanrmd/inst/resources/water/water.css | 1536 +++++++++- cleanrmd-0.2.0/cleanrmd/inst/template/cleanrmd.html | 10 cleanrmd-0.2.0/cleanrmd/man/cleanrmd_themes.Rd | 9 cleanrmd-0.2.0/cleanrmd/man/html_document_clean.Rd | 2 cleanrmd-0.2.0/cleanrmd/man/rmd-fragments/usage.Rmd | 2 cleanrmd-0.2.0/cleanrmd/man/use_cleanrmd.Rd | 12 cleanrmd-0.2.0/cleanrmd/tests/testthat/test-highlight.R | 44 cleanrmd-0.2.0/cleanrmd/tests/testthat/test-themes.R | 38 55 files changed, 2572 insertions(+), 640 deletions(-)
Title: Relationship Matrices for Diploid and Autopolyploid Species
Description: Fast computation of A (pedigree), G (genomic-base), and H (A corrected
by G) relationship matrices for diploid and autopolyploid species. Several methods
are implemented considering additive and non-additive models.
Author: Rodrigo Amadeu [aut, cre],
Luis Ferrao [aut, ctb],
Thiago Oliveira [aut, ctb],
Catherine Cellon [ctb],
Leticia Lara [ctb],
Marcio Resende [ctb],
Ivone Oliveira [ctb],
Patricio Munoz [ctb],
Augusto Garcia [ctb]
Maintainer: Rodrigo Amadeu <rramadeu@gmail.com>
Diff between AGHmatrix versions 3.0.1 dated 2026-07-22 and 3.0.3 dated 2026-10-01
DESCRIPTION | 6 ++-- MD5 | 52 ++++++++++++++++++------------------ R/Amatrix.R | 46 ++++++++++++++++++++----------- R/Gmatrix.R | 10 ++++-- R/Hmatrix.R | 18 ++++++------ R/datatreat.R | 48 +++++++++++++++++++++++++++++++++ inst/doc/Tutorial_AGHmatrix.html | 14 ++++----- src/amatrix_kerr.cpp | 27 ++++++++++++++++++ src/amatrix_ploidy2.cpp | 27 ++++++++++++++++++ src/amatrix_slater.cpp | 27 ++++++++++++++++++ src/ascii_to_number.cpp | 28 ++++++++++++++++++- src/check_matrix.cpp | 28 +++++++++++++++++++ src/datatreat.cpp | 49 +++++++++++++++++++++++++++++---- src/diploid_p0p2_TwoPQ.cpp | 30 ++++++++++++++++++++ src/dominance_matrix.cpp | 28 +++++++++++++++++++ src/gmatrix_endelman.cpp | 28 +++++++++++++++++++ src/gmatrix_markers_mask.cpp | 28 +++++++++++++++++++ src/gmatrix_slater.cpp | 28 +++++++++++++++++++ src/gmatrix_su.cpp | 28 +++++++++++++++++++ src/gmatrix_utils.h | 28 +++++++++++++++++++ src/gmatrix_vanraden.cpp | 28 +++++++++++++++++++ src/gmatrix_vanraden_poly.cpp | 28 +++++++++++++++++++ src/gmatrix_vitezica.cpp | 28 +++++++++++++++++++ src/hmatrix_martini.cpp | 28 +++++++++++++++++++ src/hmatrix_munoz.cpp | 28 +++++++++++++++++++ src/slater_par.cpp | 28 +++++++++++++++++++ tests/testthat/test_datatreat_cpp.R | 7 ++-- 27 files changed, 678 insertions(+), 75 deletions(-)
Title: Create Tests According to QTI 2.1 Standard
Description: Create tests and tasks compliant with the Question & Test Interoperability (QTI) information model version 2.1. Input sources are Rmd/md description files or S4-class objects. Output formats include standalone zip or xml files. Supports the generation of basic task types (single and multiple choice, order, pair association, matching tables, filling gaps and essay) and provides a comprehensive set of attributes for customizing tests.
Author: Andrey Shevandrin [aut, cre, cph] ,
Petr Bondarenko [ctb] ,
Ivonne Ojeda [ctb],
Johannes Titz [aut, cph] ,
Brian Mottershead [cph] ,
Stiftung fuer Innovation in der Hochschullehre [fnd]
Maintainer: Andrey Shevandrin <shevandrin@gmail.com>
Diff between rqti versions 1.3.0 dated 2026-09-21 and 1.3.1 dated 2026-10-01
DESCRIPTION | 9 +- MD5 | 108 +++++++++++++++++++++++---------- NEWS.md | 23 +++++++ R/AssessmentItem.R | 8 ++ R/LMS.R | 38 ++++++++++- R/Opal.R | 21 +++++- R/extract_results.R | 18 +++-- R/object_builder.R | 106 ++++++++++++++++++++++++++++---- R/qti_task.R | 83 ++++++++++++++++++++++++- R/qti_test.R | 28 +++++++- inst/QTIJS/themecc/style.css | 15 +++- inst/apipv1p0 |only inst/maptolresponse.xsd |only inst/qti_v2p1p2_extension.xsd | 49 ++------------ inst/w3 |only inst/xsd/imsqtiv2p2_html5_v1p0.xsd |only man/AssessmentItem-class.Rd | 8 ++ man/DirectedPair-class.Rd | 8 ++ man/Entry-class.Rd | 8 ++ man/Essay-class.Rd | 8 ++ man/LMS-class.Rd | 5 + man/MatchTable-class.Rd | 8 ++ man/MultipleChoice-class.Rd | 8 ++ man/MultipleChoiceTable-class.Rd | 8 ++ man/OneInColTable-class.Rd | 8 ++ man/OneInRowTable-class.Rd | 8 ++ man/Opal-class.Rd | 4 + man/Ordering-class.Rd | 8 ++ man/SingleChoice-class.Rd | 8 ++ man/create_question_object.Rd | 15 ++++ man/extract_results.Rd | 2 man/opal.Rd | 10 ++- man/upload2opal.Rd | 6 + tests/testthat/test-extract_results.R | 54 ++++++++++++++++ tests/testthat/test-item-css.R |only tests/testthat/test-opal-credentials.R |only tests/testthat/test-qti_task.R | 19 +++++ tests/testthat/test-verify_qti.R | 61 ++++++++++++++++++ 38 files changed, 651 insertions(+), 119 deletions(-)
Title: Import Brazilian Real Estate Data into R
Description: Provides access to Brazilian real estate market data from multiple
official sources: the Central Bank of Brazil (BCB)
<https://www.bcb.gov.br/>, the Brazilian Association of Real Estate
Developers (ABRAINC) <https://abrainc.org.br/>, the Brazilian Association
of Real Estate Credit and Savings Entities (ABECIP)
<https://www.abecip.org.br/>, the Getulio Vargas Foundation (FGV)
<https://portalibre.fgv.br/>, and the Bank for International Settlements
(BIS) <https://www.bis.org/>, as well as Brazil's Federal Revenue Service
<https://www.gov.br/receitafederal/pt-br/>, the Brazilian Institute of
Geography and Statistics (IBGE) <https://www.ibge.gov.br/>, and the
Ministry of Cities <https://www.gov.br/cidades/pt-br/>.
Author: Vinicius Oike [aut, cre, cph]
Maintainer: Vinicius Oike <viniciusoike@gmail.com>
Diff between realestatebr versions 1.0.1 dated 2026-06-05 and 1.2.0 dated 2026-10-01
realestatebr-1.0.1/realestatebr/inst/doc/working-with-rppi.R |only realestatebr-1.0.1/realestatebr/inst/doc/working-with-rppi.Rmd |only realestatebr-1.0.1/realestatebr/inst/doc/working-with-rppi.html |only realestatebr-1.0.1/realestatebr/tests/basic_checks_2.R |only realestatebr-1.0.1/realestatebr/tests/fixes_bcb_series.R |only realestatebr-1.0.1/realestatebr/vignettes/working-with-rppi.Rmd |only realestatebr-1.2.0/realestatebr/DESCRIPTION | 44 realestatebr-1.2.0/realestatebr/MD5 | 164 +- realestatebr-1.2.0/realestatebr/NAMESPACE | 4 realestatebr-1.2.0/realestatebr/NEWS.md | 111 + realestatebr-1.2.0/realestatebr/R/cache_github.R | 16 realestatebr-1.2.0/realestatebr/R/data-abecip.R |only realestatebr-1.2.0/realestatebr/R/data-abrainc.R |only realestatebr-1.2.0/realestatebr/R/data-bcb_realestate.R |only realestatebr-1.2.0/realestatebr/R/data-bcb_series.R |only realestatebr-1.2.0/realestatebr/R/data-cno.R |only realestatebr-1.2.0/realestatebr/R/data-fgv_ibre.R |only realestatebr-1.2.0/realestatebr/R/data-mcmv.R |only realestatebr-1.2.0/realestatebr/R/data-paic.R |only realestatebr-1.2.0/realestatebr/R/data-pim_pf_construction.R |only realestatebr-1.2.0/realestatebr/R/data-rppi.R |only realestatebr-1.2.0/realestatebr/R/data-rppi_bis.R |only realestatebr-1.2.0/realestatebr/R/data-secovi.R |only realestatebr-1.2.0/realestatebr/R/data-sinapi.R |only realestatebr-1.2.0/realestatebr/R/data.R | 8 realestatebr-1.2.0/realestatebr/R/get_abecip_indicators.R | 11 realestatebr-1.2.0/realestatebr/R/get_bcb_realestate.R | 51 realestatebr-1.2.0/realestatebr/R/get_bcb_series.R | 130 + realestatebr-1.2.0/realestatebr/R/get_dataset.R | 282 +++- realestatebr-1.2.0/realestatebr/R/get_paic.R |only realestatebr-1.2.0/realestatebr/R/get_pim_pf_construction.R |only realestatebr-1.2.0/realestatebr/R/get_rppi.R | 21 realestatebr-1.2.0/realestatebr/R/get_secovi.R | 230 ++- realestatebr-1.2.0/realestatebr/R/get_sinapi.R |only realestatebr-1.2.0/realestatebr/R/helpers_download.R | 52 realestatebr-1.2.0/realestatebr/R/ibge_aggregates.R |only realestatebr-1.2.0/realestatebr/R/list_datasets.R | 26 realestatebr-1.2.0/realestatebr/R/query_dataset.R |only realestatebr-1.2.0/realestatebr/R/rppi_helpers.R | 24 realestatebr-1.2.0/realestatebr/R/sysdata.rda |binary realestatebr-1.2.0/realestatebr/R/utils.R | 2 realestatebr-1.2.0/realestatebr/R/utils_globals.R | 3 realestatebr-1.2.0/realestatebr/README.md | 107 - realestatebr-1.2.0/realestatebr/build/vignette.rds |binary realestatebr-1.2.0/realestatebr/inst/WORDLIST | 2 realestatebr-1.2.0/realestatebr/inst/doc/getting-started.R | 121 - realestatebr-1.2.0/realestatebr/inst/doc/getting-started.Rmd | 139 +- realestatebr-1.2.0/realestatebr/inst/doc/getting-started.html | 685 ++++++++-- realestatebr-1.2.0/realestatebr/inst/extdata/datasets.yaml | 631 +++++++++ realestatebr-1.2.0/realestatebr/man/abecip.Rd |only realestatebr-1.2.0/realestatebr/man/abrainc.Rd |only realestatebr-1.2.0/realestatebr/man/bcb_realestate.Rd |only realestatebr-1.2.0/realestatebr/man/bcb_series.Rd |only realestatebr-1.2.0/realestatebr/man/bcb_series_first_date.Rd |only realestatebr-1.2.0/realestatebr/man/cno.Rd |only realestatebr-1.2.0/realestatebr/man/dim_city.Rd | 8 realestatebr-1.2.0/realestatebr/man/download_bcb_series.Rd | 8 realestatebr-1.2.0/realestatebr/man/download_secovi.Rd | 8 realestatebr-1.2.0/realestatebr/man/fetch_github_release_asset.Rd | 3 realestatebr-1.2.0/realestatebr/man/fetch_sgs_series.Rd |only realestatebr-1.2.0/realestatebr/man/fgv_ibre.Rd |only realestatebr-1.2.0/realestatebr/man/figures/README-bis-example-1.png |binary realestatebr-1.2.0/realestatebr/man/figures/README-rppi-example-1.png |binary realestatebr-1.2.0/realestatebr/man/figures/hexlogo.png |binary realestatebr-1.2.0/realestatebr/man/figures/hexlogo.svg | 2 realestatebr-1.2.0/realestatebr/man/figures/inner_temp.png |binary realestatebr-1.2.0/realestatebr/man/figures/logo_cropped.png |only realestatebr-1.2.0/realestatebr/man/get_bcb_series.Rd | 16 realestatebr-1.2.0/realestatebr/man/get_dataset.Rd | 44 realestatebr-1.2.0/realestatebr/man/get_dataset_from_source.Rd | 13 realestatebr-1.2.0/realestatebr/man/get_dataset_info.Rd | 3 realestatebr-1.2.0/realestatebr/man/get_dataset_with_fallback.Rd | 6 realestatebr-1.2.0/realestatebr/man/get_from_github_cache.Rd | 2 realestatebr-1.2.0/realestatebr/man/get_from_internal_function.Rd | 12 realestatebr-1.2.0/realestatebr/man/get_paic.Rd |only realestatebr-1.2.0/realestatebr/man/get_pim_pf_construction.Rd |only realestatebr-1.2.0/realestatebr/man/get_sinapi.Rd |only realestatebr-1.2.0/realestatebr/man/list_datasets.Rd | 8 realestatebr-1.2.0/realestatebr/man/mcmv.Rd |only realestatebr-1.2.0/realestatebr/man/paic.Rd |only realestatebr-1.2.0/realestatebr/man/pim_pf_construction.Rd |only realestatebr-1.2.0/realestatebr/man/query_dataset.Rd |only realestatebr-1.2.0/realestatebr/man/realestatebr-package.Rd | 4 realestatebr-1.2.0/realestatebr/man/rppi.Rd |only realestatebr-1.2.0/realestatebr/man/rppi_bis.Rd |only realestatebr-1.2.0/realestatebr/man/secovi.Rd |only realestatebr-1.2.0/realestatebr/man/show_import_message.Rd | 9 realestatebr-1.2.0/realestatebr/man/sinapi.Rd |only realestatebr-1.2.0/realestatebr/tests/testthat/_snaps |only realestatebr-1.2.0/realestatebr/tests/testthat/fixtures |only realestatebr-1.2.0/realestatebr/tests/testthat/test-bcb-sgs.R |only realestatebr-1.2.0/realestatebr/tests/testthat/test-code-review-fixes.R |only realestatebr-1.2.0/realestatebr/tests/testthat/test-get-paic.R |only realestatebr-1.2.0/realestatebr/tests/testthat/test-get_dataset-interface.R |only realestatebr-1.2.0/realestatebr/tests/testthat/test-get_pim_pf_construction.R |only realestatebr-1.2.0/realestatebr/tests/testthat/test-get_secovi.R |only realestatebr-1.2.0/realestatebr/tests/testthat/test-get_sinapi.R |only realestatebr-1.2.0/realestatebr/tests/testthat/test-helpers-download.R |only realestatebr-1.2.0/realestatebr/tests/testthat/test-ibge_aggregates.R |only realestatebr-1.2.0/realestatebr/tests/testthat/test-integration-get_dataset.R | 51 realestatebr-1.2.0/realestatebr/tests/testthat/test-internal-functions.R | 31 realestatebr-1.2.0/realestatebr/tests/testthat/test-mcmv-discovery.R |only realestatebr-1.2.0/realestatebr/tests/testthat/test-mcmv-snapshot.R |only realestatebr-1.2.0/realestatebr/tests/testthat/test-query_dataset.R |only realestatebr-1.2.0/realestatebr/vignettes/getting-started.Rmd | 139 +- 105 files changed, 2384 insertions(+), 847 deletions(-)
Title: Heuristics for the Quadratic Assignment Problem (QAP)
Description: Implements a simulated annealing heuristic for the Quadratic Assignment Problem (QAP). Originally formulated as a facility location problem in operations research, the QAP also has applications in data analysis. The problem is NP-hard.
Author: Michael Hahsler [aut, cre, cph] ,
Franz Rendl [ctb, cph]
Maintainer: Michael Hahsler <mhahsler@lyle.smu.edu>
Diff between qap versions 0.1-2 dated 2022-06-27 and 0.1-3 dated 2026-10-01
DESCRIPTION | 27 +++---- MD5 | 27 +++---- NAMESPACE | 11 +- NEWS.md | 7 + R/qap.R | 95 ++++++++++++++++++++++++ R/qapSA.R | 34 +++++--- R/read_qaplib.R | 58 +++++++++++++-- R/validate.R |only README.md | 93 +++++++++++++++--------- build/partial.rdb |binary inst/CITATION |only man/figures |only man/qap.Rd | 145 ++++++++++++++++++-------------------- man/read_qaplib.Rd | 53 +++++-------- tests/testthat/test-qap.R | 64 ++++++++++++++-- tests/testthat/test-read_qaplib.R | 69 +++++++++++++++--- 16 files changed, 475 insertions(+), 208 deletions(-)
Title: Import Data from Spanish Sociological Research Center (CIS)
Description: Search and import data directly to R from the Spanish Sociological
Research Center (CIS) <https://www.cis.es/inicio>. The CIS is a public
institution that conducts electoral and sociological research studies on the
Spanish society. The CIS has a large database of surveys that can be
accessed through its website. The package includes functions to search for
surveys, survey questions and timeseries, and import the data directly to R.
Author: Hector Meleiro [aut, cre]
Maintainer: Hector Meleiro <hmeleiros@gmail.com>
Diff between opencis versions 0.1.2 dated 2026-09-07 and 0.1.4 dated 2026-10-01
DESCRIPTION | 6 MD5 | 34 ++--- NEWS.md | 43 ++++++ R/examples/search_cis.R | 22 ++- R/http.R | 64 +++++++++ R/search.R | 103 +++++++++++---- R/zzz.R | 5 README.md | 40 +++++- inst/doc/usage.R | 25 +++ inst/doc/usage.Rmd | 70 +++++++++- inst/doc/usage.html | 192 +++++++++++++++++++++++------ man/cis_catalog_url_date.Rd | 4 man/clear_cache.Rd | 4 man/search_all_cis.Rd | 27 +++- man/search_cis.Rd | 27 +++- tests/testthat/test-cis_catalog_url_date.R | 24 +++ tests/testthat/test-http-retry.R |only tests/testthat/test-search-parsers.R |only vignettes/usage.Rmd | 70 +++++++++- 19 files changed, 647 insertions(+), 113 deletions(-)
Title: Most Likely Transformations: Documentation and Regression Tests
Description: Additional documentation, a package vignette and
regression tests for package mlt.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt.docreg versions 1.1-13 dated 2026-06-09 and 1.1-14 dated 2026-10-01
DESCRIPTION | 10 +++++----- MD5 | 18 +++++++++--------- build/vignette.rds |binary inst/NEWS.Rd | 6 ++++++ inst/doc/mlt.R | 2 +- inst/doc/mlt.Rnw | 2 +- inst/doc/mlt.pdf |binary tests/truncreg-Ex.R | 2 ++ tests/truncreg-Ex.Rout.save | 8 +++++--- vignettes/mlt.Rnw | 2 +- 10 files changed, 30 insertions(+), 20 deletions(-)
Title: Calculation of Maritime Distances
Description: Tools for calculating and visualizing maritime distances and routes between geographic points. At its core, it implements a fast Haversine formula implemented in data.table to compute great circle distances across sea regions (i.e. avoiding land mass). The package builds a spatial network graph from port and cluster coordinates and uses a shortest path algorithm to identify optimal maritime routes between origin-destination pairs. For visualization, the package exports maps displaying individual routes, multi-destination networks, or continuous routes through specified waypoints. Utility functions identify the nearest network nodes to arbitrary coordinates and handle the antimeridian discontinuities common in Pacific maritime mapping. The package is particularly suited for analyzing shipping lanes, trade routes, and vessel trajectory data.
Author: Panayotis Christidis [cre, aut]
Maintainer: Panayotis Christidis <Panayotis.Christidis@ec.europa.eu>
Diff between mardist versions 1.0.1 dated 2026-09-14 and 1.1.1 dated 2026-10-01
DESCRIPTION | 10 ++--- MD5 | 9 ++-- NAMESPACE | 1 R/mardist.R | 86 +++++++++++++++++++++++++++++++++-------------- R/route_wrapper.R | 3 + man/multi_point_route.Rd |only 6 files changed, 75 insertions(+), 34 deletions(-)
Title: Reference-Compatible Outdoor Wet Bulb Globe Temperature
Description: Computes outdoor wet bulb globe temperature using the
reference-compatible Liljegren numerical model described by Liljegren et
al. (2008) <doi:10.1080/15459620802310770>. Provides dependency-free,
vectorized access to the native calculation with explicit input units,
per-row validation, and deterministic failure reporting.
Author: Yifei Zheng [aut, cre, cph] ,
James C. Liljegren [ctb],
Nels Larson [ctb],
UChicago Argonne, LLC [cph]
Maintainer: Yifei Zheng <zyf0717@gmail.com>
Diff between lwbgt versions 0.4.1 dated 2026-09-29 and 1.0.1 dated 2026-10-01
DESCRIPTION | 7 +-- MD5 | 24 +++++------ NEWS.md | 24 +++++++++++ R/lwbgt.R | 7 ++- README.md | 2 configure | 8 +-- inst/COPYRIGHTS | 2 inst/NOTICE | 2 man/calculate.Rd | 2 man/lwbgt_input.Rd | 9 ++-- src/lwbgt.h | 8 ++- src/wbgt.c | 110 ++++++++++++++++++++++++----------------------------- tests/test-api.R | 23 +++++++---- 13 files changed, 130 insertions(+), 98 deletions(-)
Title: Resistant Clustering via Chopping Up Mutual Reachability Minimum
Spanning Trees
Description: Implements a fast and resistant divisive clustering algorithm which
identifies a specified number of clusters: 'lumbermark' iteratively
chops off sizeable limbs that are joined by protruding segments
of a dataset's mutual reachability minimum spanning tree
(Gagolewski, 2026 <DOI:10.48550/arXiv.2604.07143>). The use of a mutual
reachability distance pulls peripheral points farther away from each other.
It is a viable alternative to the 'HDBSCAN*' algorithm
and can be viewed as a divisive version of Genie.
The resulting partitions of different granularities are properly nested.
When combined with the 'deadwood' package, it can act as an outlier detector.
The 'Python' version of 'lumbermark' is available via 'PyPI'.
Author: Marek Gagolewski [aut, cre, cph]
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between lumbermark versions 0.9.0 dated 2026-03-16 and 0.9.1 dated 2026-10-01
DESCRIPTION | 26 +++++++++++---------- MD5 | 20 ++++++++-------- NEWS | 16 +++++++++++++ R/RcppExports.R | 4 +-- R/lumbermark.R | 53 ++++++++++++++++++++++++++++++-------------- man/lumbermark-package.Rd | 5 ++++ man/lumbermark.Rd | 55 +++++++++++++++++++++++++++++----------------- src/RcppExports.cpp | 9 ++++--- src/RcppLumbermark.cpp | 4 ++- src/c_common.h | 5 +--- src/c_lumbermark.h | 39 +++++++++++++++++++++----------- 11 files changed, 154 insertions(+), 82 deletions(-)
Title: Hatemi-J Cointegration Test with Two Unknown Regime Shifts
Description: Implements the Hatemi-J (2008) cointegration test which allows
for two unknown structural breaks (regime shifts) in the cointegrating
relationship. The test provides three test statistics: ADF* (Augmented
Dickey-Fuller), Zt* (Phillips-Perron Z_t), and Za* (Phillips-Perron Z_alpha),
along with endogenously determined break dates. Critical values are based
on simulations from Hatemi-J (2008) <doi:10.1007/s00181-007-0175-9>.
The long-run variance in the Phillips statistics is estimated by default
with a prewhitened quadratic spectral kernel and the automatic bandwidth
of Andrews (1991) <doi:10.2307/2938229>, following Andrews and Monahan
(1992) <doi:10.2307/2951574>.
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between hatemicoint versions 1.0.1 dated 2026-03-13 and 1.1.0 dated 2026-10-01
DESCRIPTION | 13 MD5 | 28 - NEWS.md | 94 +++- R/hatemicoint-package.R | 94 ++-- R/hatemicoint.R | 935 ++++++++++++++++++++++++++------------------- R/utils.R | 629 ++++++++++++++++-------------- README.md | 219 +++++----- build/partial.rdb |binary inst |only man/hatemicoint-package.Rd | 123 +++-- man/hatemicoint.Rd | 344 +++++++++++----- man/print.hatemicoint.Rd | 38 - man/summary.hatemicoint.Rd | 38 - tests |only 14 files changed, 1500 insertions(+), 1055 deletions(-)
Title: Download Geographic Data on Various Topics Provided and Managed
by the Spatial Data Infrastructure of Peru
Description: Provides R users with easy access to official cartographic
data from Peru across a range of topics, including society,
transport, environment, agriculture, climate, and more. It
also includes data from regional government entities and
technical-scientific institutions, all managed by Peru's
Spatial Data Infrastructure. For more information, please
visit: <https://www.geoidep.gob.pe/>.
Author: antony barja [aut, cre, cph]
Maintainer: antony barja <geografo.pe@gmail.com>
Diff between geoidep versions 0.4.0 dated 2026-09-27 and 0.5.0 dated 2026-10-01
DESCRIPTION | 23 +-- MD5 | 118 +++++++++------- NAMESPACE | 4 NEWS.md | 47 ++++++ R/ana.R |only R/ceplan.R |only R/geobosque.R | 150 ++++++++++++++++----- R/igp.R |only R/mapbiomas-alerta.R | 2 R/mapbiomas-fire.R | 71 +++++----- R/mapbiomas-lulc.R | 86 +++++++----- R/oefa.R |only R/sysdata.rda |binary R/utils.R | 65 ++++++++- R/zzz.R | 40 ++--- README.md | 26 ++- inst/doc/geoidep.R | 27 ++- inst/doc/geoidep.Rmd | 28 ++- inst/doc/geoidep.html | 38 ++--- inst/sources-idep/sources_geoidep.csv | 205 ++++++++++++++++++++++++++++- man/geoidep-package.Rd | 56 +++---- man/get_ana_data.Rd |only man/get_ceplan_data.Rd |only man/get_data_sources.Rd | 46 +++--- man/get_departaments.Rd | 84 +++++------ man/get_districts.Rd | 108 +++++++-------- man/get_early_warning.Rd | 64 ++++----- man/get_forest_loss_data.Rd | 88 ++++++------ man/get_hotspots_data.Rd | 60 ++++---- man/get_igp_seismic_data.Rd |only man/get_inaigem_data.Rd | 82 +++++------ man/get_mapbiomas_alert_images.Rd | 104 +++++++------- man/get_mapbiomas_peru_alerta.Rd | 96 ++++++------- man/get_mapbiomas_peru_fire.Rd | 72 +++++----- man/get_mapbiomas_peru_fire_legend.Rd | 70 ++++----- man/get_mapbiomas_peru_fire_products.Rd | 44 +++--- man/get_mapbiomas_peru_lulc.Rd | 68 ++++----- man/get_mapbiomas_peru_lulc_series.Rd | 76 +++++----- man/get_mtc_data.Rd | 82 +++++------ man/get_oefa_data.Rd |only man/get_providers.Rd | 46 +++--- man/get_provinces.Rd | 86 ++++++------ man/get_sernanp_data.Rd | 80 +++++------ man/scale_fill_mapbiomas_peru_fire_d.Rd | 90 ++++++------ man/scale_fill_mapbiomas_peru_lulc_d.Rd | 82 +++++------ man/senamhi_alert_by_number.Rd | 38 ++--- man/senamhi_alerts_by_year.Rd | 38 ++--- man/senamhi_geometry_by_level.Rd | 58 ++++---- man/senamhi_get_meteorological_table.Rd | 52 +++---- man/senamhi_get_spatial_alerts.Rd | 74 +++++----- tests/testthat/helper-proj.R |only tests/testthat/test-ana.R |only tests/testthat/test-ceplan.R |only tests/testthat/test-get_data_sources.R | 91 +++++++----- tests/testthat/test-get_departaments.R |only tests/testthat/test-get_early_warning.R |only tests/testthat/test-get_forest_loss_data.R | 54 +++++-- tests/testthat/test-get_igp_seismic_data.R |only tests/testthat/test-get_inaigem_data.R |only tests/testthat/test-get_mtc_data.R |only tests/testthat/test-get_providers.R | 50 +++---- tests/testthat/test-get_provinces.R |only tests/testthat/test-get_sernanp.R | 2 tests/testthat/test-mapbiomas-alerta.R |only tests/testthat/test-mapbiomas-fire.R |only tests/testthat/test-mapbiomas-lulc.R |only tests/testthat/test-oefa.R |only tests/testthat/test-senamhi.R |only tests/testthat/test-utils.R | 84 +++++++++++ tests/testthat/test-zzz.R | 48 +++--- vignettes/geoidep.Rmd | 28 ++- 71 files changed, 1859 insertions(+), 1272 deletions(-)
Title: Factor Analysis for All
Description: Provides a comprehensive Shiny-based graphical user interface
for conducting a wide range of factor analysis procedures. 'FAfA'
(Factor Analysis for All) guides users through data uploading,
assumption checking (descriptive statistics, collinearity, multivariate
normality, outliers), data wrangling (variable exclusion, data
splitting), exploratory factor analysis (EFA) with various rotation
and extraction methods, confirmatory factor analysis (CFA), reliability
analysis (e.g., Cronbach's Alpha, McDonald's Omega), and measurement
invariance testing across groups. Factor retention methods include
parallel analysis following Horn (1965) <doi:10.1007/BF02289447>,
optimized parallel analysis following Timmerman and Lorenzo-Seva
(2011) <doi:10.1037/a0023353>, permutation parallel analysis for
categorical variables following Lubbe (2019) <doi:10.1037/met0000171>,
the Hull method following Lorenzo-Seva et al. (2011)
<doi:10.1080/00273171.2011.564527>, minimum average pa [...truncated...]
Author: Abdullah Faruk KILIC [aut, cre, cph],
Ahmet Caliskan [aut, cph],
Melissa G. Wolf [ctb, cph] ,
Daniel McNeish [ctb, cph] ,
Brian P. O'Connor [ctb, cph]
Maintainer: Abdullah Faruk KILIC <afarukkilic@trakya.edu.tr>
Diff between FAfA versions 1.4 dated 2026-09-30 and 1.4.1 dated 2026-10-01
FAfA-1.4.1/FAfA/DESCRIPTION | 46 ++-- FAfA-1.4.1/FAfA/MD5 | 30 +- FAfA-1.4.1/FAfA/NEWS.md | 14 + FAfA-1.4.1/FAfA/R/mod_about_server.r | 5 FAfA-1.4.1/FAfA/R/mod_about_ui.r | 2 FAfA-1.4.1/FAfA/R/mod_ega_server.r | 5 FAfA-1.4.1/FAfA/R/mod_missing_server.r | 11 - FAfA-1.4.1/FAfA/R/project_utils.R | 2 FAfA-1.4.1/FAfA/README.md | 117 ++++------- FAfA-1.4.1/FAfA/inst/COPYRIGHTS | 2 FAfA-1.4.1/FAfA/inst/WORDLIST | 38 ++- FAfA-1.4.1/FAfA/inst/extdata/ui-test-data.csv | 2 FAfA-1.4.1/FAfA/inst/golem-config.yml | 2 FAfA-1.4.1/FAfA/tests/testthat/test-critical-flow.R |only FAfA-1.4.1/FAfA/tests/testthat/test-golem-recommended.R | 22 +- FAfA-1.4.1/FAfA/tests/testthat/test-removed-efatools.R | 23 +- FAfA-1.4/FAfA/tests/testthat/test-shinytest2-critical-flow.R |only 17 files changed, 178 insertions(+), 143 deletions(-)
Title: Goodness-of-Fit and Calibration Tests for Logistic Regression
Description: Provides a unified battery of goodness-of-fit and calibration
tests for binary logistic regression, runnable in a single call via
'run.all.gof()'. Around twenty-five tests spanning five decades of
literature are aggregated and grouped by the departure each is built to
detect: global and standardized statistics, partition tests such as
Hosmer-Lemeshow, directed and covariate-space tests, smoothing and
resampling tests, and calibration tests. Each is obtained from its own
package where installed and attributed to its authors. The package also
implements the author's own procedures for sparse data, where the
Hosmer-Lemeshow test loses power: the omnibus Ebrahim-Farrington test
'ef.gof()', the directed 'edge.gof()' and its covariate-space variant
'cdef.gof()', the Cauchy-combination ensemble 'edges.gof()', 'DeepGOF-1'
(a pretrained convolutional statistic whose level comes from the analyst's
own parametric bootstrap rather than from the network), and 'legoft()'
(a frozen-weight combination [...truncated...]
Author: Ebrahim Khaled Ebrahim [aut, cre] ,
Jiawei Zhang [ctb, cph] ,
Jie Ding [ctb, cph] ,
Yuhong Yang [ctb, cph]
Maintainer: Ebrahim Khaled Ebrahim <ebrahimkhaled@alexu.edu.eg>
Diff between ebrahim.gof versions 2.8.0 dated 2026-09-26 and 2.9.0 dated 2026-10-01
DESCRIPTION | 8 MD5 | 63 NAMESPACE | 6 NEWS.md | 126 + R/bagoft_fast.R | 646 ++--- R/deepgof.R | 533 ++++ R/def_ensemble_gof.R | 2 R/def_gof.R | 108 R/ebrahim.gof-package.R | 3 R/edge_gof.R | 66 R/edge_stream.R |only R/proj_gof.R | 428 +-- R/run_all_external.R |only R/run_all_gof.R | 3679 ++++++++++++++++----------------- README.md | 31 inst/doc/ebrahim-farrington-intro.html | 57 inst/doc/ebrahim-gof-toolbox.html | 132 - man/bagoft.fast.Rd | 274 +- man/deepgof1.Rd | 86 man/deepgof1.external.Rd |only man/def.ensemble.gof.Rd | 2 man/def.gof.Rd | 45 man/ebrahim.gof-package.Rd | 3 man/edge.gof.Rd | 55 man/edge.stream.Rd |only man/projection.gof.Rd | 214 - man/run.all.external.Rd |only man/run.all.gof.Rd | 11 tests/testthat/test-bagoft-fast.R | 180 - tests/testthat/test-deepgof1.R | 207 + tests/testthat/test-def-external.R |only tests/testthat/test-def-gof.R | 4 tests/testthat/test-edge-stream.R |only tests/testthat/test-exports-smoke.R | 6 tests/testthat/test-hl-largeN.R |only tests/testthat/test-proj-gof.R | 200 - tests/testthat/test-run-all-external.R |only 37 files changed, 4161 insertions(+), 3014 deletions(-)
Title: Dose Transition Pathways for Continual Reassessment Method
Description: Provides the dose transition pathways (DTP) to project in advance
the doses recommended by a model-based design for subsequent patients (stay,
escalate, deescalate or stop early) using all the accumulated toxicity
information; See Yap et al (2017) <doi:10.1158/1078-0432.CCR-17-0582>. DTP
can be used as a design and an operational tool and can be displayed as a
table or flow diagram. The 'dtpcrm' package also provides the modified
continual reassessment method (CRM) and time-to-event CRM (TITE-CRM) with
added practical considerations to allow stopping early when there is
sufficient evidence that the lowest dose is too toxic and/or there is a
sufficient number of patients dosed at the maximum tolerated dose.
Author: Christina Yap [aut],
Daniel Slade [aut],
Kristian Brock [aut],
Yi Pan [aut],
Xiaoran Lai [cre]
Maintainer: Xiaoran Lai <xiaoran.lai@icr.ac.uk>
Diff between dtpcrm versions 0.1.1 dated 2019-08-20 and 0.1.3 dated 2026-10-01
DESCRIPTION | 27 + MD5 | 17 - NEWS.md |only R/applied_crm.R | 2 R/simulation_titecrm.R | 28 + build/vignette.rds |binary inst/doc/dtpcrm_vignettev02.R | 60 ++-- inst/doc/dtpcrm_vignettev02.html | 581 ++++++++++++++++++++++++--------------- man/applied_crm.Rd | 16 - man/applied_titecrm_sim.Rd | 2 10 files changed, 463 insertions(+), 270 deletions(-)
Title: Outlier Detection via Pruning Mutual Reachability Minimum
Spanning Trees
Description: Implements an anomaly detection algorithm based on a dataset's
mutual reachability minimum spanning tree: 'deadwood' prunes
protruding tree segments and marks small debris as outliers;
see Gagolewski (2026) <https://deadwood.gagolewski.com/>.
More precisely, tree edges with weights greater than the detected elbow
point are removed. All the resulting connected components whose sizes do
not exceed a prespecified threshold are deemed anomalous. The use of
a mutual reachability distance pulls peripheral observations farther away
from one another. If the dataset is comprised of well-separated clusters
of heterogeneous densities, an attempt to split the dataset and refine
the outlierness markers will be made.
The 'Python' version of 'deadwood' is available via 'PyPI'.
Author: Marek Gagolewski [aut, cre, cph]
Maintainer: Marek Gagolewski <marek@gagolewski.com>
Diff between deadwood versions 0.9.1 dated 2026-09-29 and 0.9.2 dated 2026-10-01
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NEWS | 12 ++++++++++-- R/deadwood.R | 3 +++ man/deadwood.Rd | 3 +++ src/RcppDeadwood.cpp | 6 ++++++ src/c_deadwood.h | 8 ++++++-- 7 files changed, 38 insertions(+), 14 deletions(-)
Title: Fast, Efficient, and Versatile Data Preprocessing and Reshaping
with 'C++', 'OpenMP' & 'SIMD'
Description: Fast, efficient, and versatile preprocessing and reshaping of tabular
and time-series data. Most heavy routines are implemented in 'C++' via
'Rcpp', with optional 'OpenMP' parallelization and 'SIMD' acceleration
('AVX2' / 'AVX-512') on supported hardware. The 0.1.8 release rewrites
the cleaning routines in 'C++' and delivers a 1.1–1146× speedup over
0.1.5. The 'melt()' and 'dcast()' reshaping functions achieve a
0.6×–1628.9× speedup for 'melt()' and a 1.9×–799.8× speedup for
'dcast()' relative to every one of the seven major alternatives in
the R and Python ecosystems, at every tested scale (from 1,000 to
100,000,000 rows), and produce output identical to 'reshape2',
'data.table', 'tidyr', 'pandas', 'polars', 'dask', and 'duckdb'.
Core preprocessing steps include variable deletion by missing
fraction, observation deletion by consecutive missing runs,
point-by-point weighted outlier removal via conditional extremum,
traditional percentile-based outlier removal, and linear
interpolation [...truncated...]
Author: Chun-Sheng Liang [aut, cre] ,
Hao Wu [aut],
Hai-Yan Li [aut],
Qiang Zhang [aut],
Zhanqing Li [aut],
Ke-Bin He [aut]
Maintainer: Chun-Sheng Liang <chun-shengliang@qq.com>
Diff between dataprep versions 0.1.5 dated 2022-01-15 and 0.1.8 dated 2026-10-01
dataprep-0.1.5/dataprep/R/data.R |only dataprep-0.1.5/dataprep/R/function.R |only dataprep-0.1.5/dataprep/R/globals.R |only dataprep-0.1.5/dataprep/inst/doc/vignettes.R |only dataprep-0.1.5/dataprep/inst/doc/vignettes.Rmd |only dataprep-0.1.5/dataprep/inst/doc/vignettes.html |only dataprep-0.1.5/dataprep/vignettes/vignettes.Rmd |only dataprep-0.1.8/dataprep/DESCRIPTION | 92 +++- dataprep-0.1.8/dataprep/MD5 | 204 +++++++-- dataprep-0.1.8/dataprep/NAMESPACE | 65 ++ dataprep-0.1.8/dataprep/NEWS.md |only dataprep-0.1.8/dataprep/R/RcppExports.R |only dataprep-0.1.8/dataprep/R/balance_panel.R |only dataprep-0.1.8/dataprep/R/bin_data.R |only dataprep-0.1.8/dataprep/R/clean_strings.R |only dataprep-0.1.8/dataprep/R/condextr.R |only dataprep-0.1.8/dataprep/R/create_lags.R |only dataprep-0.1.8/dataprep/R/data_report.R |only dataprep-0.1.8/dataprep/R/dataprep-package.R |only dataprep-0.1.8/dataprep/R/dataprep.R |only dataprep-0.1.8/dataprep/R/datasets.R |only dataprep-0.1.8/dataprep/R/day_night_flag.R |only dataprep-0.1.8/dataprep/R/dcast.R |only dataprep-0.1.8/dataprep/R/decompose_ts.R |only dataprep-0.1.8/dataprep/R/deduplicate.R |only dataprep-0.1.8/dataprep/R/descdata.R |only dataprep-0.1.8/dataprep/R/descplot.R |only dataprep-0.1.8/dataprep/R/detect_outliers.R |only dataprep-0.1.8/dataprep/R/detrend_ts.R |only dataprep-0.1.8/dataprep/R/drift_detect.R |only dataprep-0.1.8/dataprep/R/dry_run.R |only dataprep-0.1.8/dataprep/R/encode_categorical.R |only dataprep-0.1.8/dataprep/R/filter_high_cor.R |only dataprep-0.1.8/dataprep/R/filter_low_var.R |only dataprep-0.1.8/dataprep/R/impute_missing.R |only dataprep-0.1.8/dataprep/R/log_returns.R |only dataprep-0.1.8/dataprep/R/melt.R |only dataprep-0.1.8/dataprep/R/na_diagnose.R |only dataprep-0.1.8/dataprep/R/obsedele.R |only dataprep-0.1.8/dataprep/R/optisolu.R |only dataprep-0.1.8/dataprep/R/percdata.R |only dataprep-0.1.8/dataprep/R/percoutl.R |only dataprep-0.1.8/dataprep/R/percplot.R |only dataprep-0.1.8/dataprep/R/phys_filter.R |only dataprep-0.1.8/dataprep/R/prep_fit.R |only dataprep-0.1.8/dataprep/R/prep_transform.R |only dataprep-0.1.8/dataprep/R/remove_diurnal_cycle.R |only dataprep-0.1.8/dataprep/R/resample_time.R |only dataprep-0.1.8/dataprep/R/roll_apply.R |only dataprep-0.1.8/dataprep/R/sample_data.R |only dataprep-0.1.8/dataprep/R/season_flag.R |only dataprep-0.1.8/dataprep/R/shorvalu.R |only dataprep-0.1.8/dataprep/R/transform_data.R |only dataprep-0.1.8/dataprep/R/utils.R |only dataprep-0.1.8/dataprep/R/validate_data.R |only dataprep-0.1.8/dataprep/R/varidele.R |only dataprep-0.1.8/dataprep/R/winsorize.R |only dataprep-0.1.8/dataprep/R/zerona.R |only dataprep-0.1.8/dataprep/README.md |only dataprep-0.1.8/dataprep/build/partial.rdb |only dataprep-0.1.8/dataprep/build/vignette.rds |binary dataprep-0.1.8/dataprep/cleanup |only dataprep-0.1.8/dataprep/cleanup.win |only dataprep-0.1.8/dataprep/configure |only dataprep-0.1.8/dataprep/configure.win |only dataprep-0.1.8/dataprep/data |only dataprep-0.1.8/dataprep/inst/CITATION |only dataprep-0.1.8/dataprep/inst/WORDLIST |only dataprep-0.1.8/dataprep/inst/benchmark_helpers.R |only dataprep-0.1.8/dataprep/inst/benchmark_melt_dcast.R |only dataprep-0.1.8/dataprep/inst/doc/dataprep-cleaning.R |only dataprep-0.1.8/dataprep/inst/doc/dataprep-cleaning.Rmd |only dataprep-0.1.8/dataprep/inst/doc/dataprep-cleaning.html |only dataprep-0.1.8/dataprep/inst/doc/dataprep-melt-dcast.R |only dataprep-0.1.8/dataprep/inst/doc/dataprep-melt-dcast.Rmd |only dataprep-0.1.8/dataprep/inst/doc/dataprep-melt-dcast.html |only dataprep-0.1.8/dataprep/inst/doc/dataprep-migration.R |only dataprep-0.1.8/dataprep/inst/doc/dataprep-migration.Rmd |only dataprep-0.1.8/dataprep/inst/doc/dataprep-migration.html |only dataprep-0.1.8/dataprep/inst/doc/dataprep-performance.R |only dataprep-0.1.8/dataprep/inst/doc/dataprep-performance.Rmd |only dataprep-0.1.8/dataprep/inst/doc/dataprep-performance.html |only dataprep-0.1.8/dataprep/inst/doc/dataprep-philosophy.R |only dataprep-0.1.8/dataprep/inst/doc/dataprep-philosophy.Rmd |only dataprep-0.1.8/dataprep/inst/doc/dataprep-philosophy.html |only dataprep-0.1.8/dataprep/inst/doc/dataprep-plots.R |only dataprep-0.1.8/dataprep/inst/doc/dataprep-plots.Rmd |only dataprep-0.1.8/dataprep/inst/doc/dataprep-plots.html |only dataprep-0.1.8/dataprep/inst/doc/dataprep-workflow.R |only dataprep-0.1.8/dataprep/inst/doc/dataprep-workflow.Rmd |only dataprep-0.1.8/dataprep/inst/doc/dataprep-workflow.html |only dataprep-0.1.8/dataprep/inst/extdata/bench_dcast_ubuntu.csv |only dataprep-0.1.8/dataprep/inst/extdata/bench_dcast_win.csv |only dataprep-0.1.8/dataprep/inst/extdata/bench_melt_ubuntu.csv |only dataprep-0.1.8/dataprep/inst/extdata/bench_melt_win.csv |only dataprep-0.1.8/dataprep/man/balance_panel.Rd |only dataprep-0.1.8/dataprep/man/bin_data.Rd |only dataprep-0.1.8/dataprep/man/clean_strings.Rd |only dataprep-0.1.8/dataprep/man/condextr.Rd | 139 +----- dataprep-0.1.8/dataprep/man/create_lags.Rd |only dataprep-0.1.8/dataprep/man/data.Rd | 234 ++++++---- dataprep-0.1.8/dataprep/man/data1.Rd | 128 ++++- dataprep-0.1.8/dataprep/man/data_report.Rd |only dataprep-0.1.8/dataprep/man/dataprep-package.Rd |only dataprep-0.1.8/dataprep/man/dataprep.Rd | 167 ++----- dataprep-0.1.8/dataprep/man/day_night_flag.Rd |only dataprep-0.1.8/dataprep/man/dcast.Rd |only dataprep-0.1.8/dataprep/man/decompose_ts.Rd |only dataprep-0.1.8/dataprep/man/deduplicate.Rd |only dataprep-0.1.8/dataprep/man/descdata.Rd | 118 ++--- dataprep-0.1.8/dataprep/man/descplot.Rd | 115 +---- dataprep-0.1.8/dataprep/man/detect_outliers.Rd |only dataprep-0.1.8/dataprep/man/detrend_ts.Rd |only dataprep-0.1.8/dataprep/man/drift_detect.Rd |only dataprep-0.1.8/dataprep/man/dry_run.Rd |only dataprep-0.1.8/dataprep/man/encode_categorical.Rd |only dataprep-0.1.8/dataprep/man/figures |only dataprep-0.1.8/dataprep/man/filter_high_cor.Rd |only dataprep-0.1.8/dataprep/man/filter_low_var.Rd |only dataprep-0.1.8/dataprep/man/impute_missing.Rd |only dataprep-0.1.8/dataprep/man/log_returns.Rd |only dataprep-0.1.8/dataprep/man/melt.Rd | 269 ++++++++++-- dataprep-0.1.8/dataprep/man/na_diagnose.Rd |only dataprep-0.1.8/dataprep/man/obsedele.Rd | 148 +++--- dataprep-0.1.8/dataprep/man/optisolu.Rd | 166 ++----- dataprep-0.1.8/dataprep/man/percdata.Rd | 104 +--- dataprep-0.1.8/dataprep/man/percoutl.Rd | 129 ++--- dataprep-0.1.8/dataprep/man/percplot.Rd | 124 +---- dataprep-0.1.8/dataprep/man/phys_filter.Rd |only dataprep-0.1.8/dataprep/man/prep_fit.Rd |only dataprep-0.1.8/dataprep/man/prep_transform.Rd |only dataprep-0.1.8/dataprep/man/remove_diurnal_cycle.Rd |only dataprep-0.1.8/dataprep/man/resample_time.Rd |only dataprep-0.1.8/dataprep/man/roll_apply.Rd |only dataprep-0.1.8/dataprep/man/sample_data.Rd |only dataprep-0.1.8/dataprep/man/season_flag.Rd |only dataprep-0.1.8/dataprep/man/shorvalu.Rd | 89 +-- dataprep-0.1.8/dataprep/man/transform_data.Rd |only dataprep-0.1.8/dataprep/man/validate_data.Rd |only dataprep-0.1.8/dataprep/man/varidele.Rd | 96 +--- dataprep-0.1.8/dataprep/man/winsorize.Rd |only dataprep-0.1.8/dataprep/man/zerona.Rd | 52 +- dataprep-0.1.8/dataprep/src |only dataprep-0.1.8/dataprep/tests |only dataprep-0.1.8/dataprep/vignettes/dataprep-cleaning.Rmd |only dataprep-0.1.8/dataprep/vignettes/dataprep-melt-dcast.Rmd |only dataprep-0.1.8/dataprep/vignettes/dataprep-migration.Rmd |only dataprep-0.1.8/dataprep/vignettes/dataprep-performance.Rmd |only dataprep-0.1.8/dataprep/vignettes/dataprep-philosophy.Rmd |only dataprep-0.1.8/dataprep/vignettes/dataprep-plots.Rmd |only dataprep-0.1.8/dataprep/vignettes/dataprep-workflow.Rmd |only dataprep-0.1.8/dataprep/vignettes/figures |only 152 files changed, 1324 insertions(+), 1115 deletions(-)
Title: Join World Bank Data, Country Codes and Maps on the ISO Spine
Description: A complete toolkit for getting country data onto honest maps.
Country names rarely line up across data sources ("US", "U.S.",
"United States", "United States of America" are one country, but a
naive join treats them as four), so 'countryatlas' makes ISO codes the
universal join key. It generalises a one-call, map-ready table that
stitches together 'ggplot2' map geometry, 'WDI' World Bank indicators
and the 'countrycode' Rosetta stone; exposes the join machinery for the
user's own data; ships curated reference data (metadata, group
memberships, an indicator catalogue, flags and currencies); adds
analysis helpers (per-capita, regional roll-ups, ranking, inequality and
convergence statistics); and turns one hand-drawn choropleth into a full
vocabulary of projected, area-honest maps (binned and quantile
choropleths, proportional-symbol, spike, bivariate, value-by-alpha,
cartogram, tile-grid, flow, small-multiple, animated, globe and
interactive), and can hand its curated, ISO-reconciled ta [...truncated...]
Author: Youzhi Yu [aut, cre]
Maintainer: Youzhi Yu <yuyouzhi666@icloud.com>
Diff between countryatlas versions 2.0.1 dated 2026-08-28 and 3.0.0 dated 2026-10-01
countryatlas-2.0.1/countryatlas/man/figures/README-globe-1.png |only countryatlas-2.0.1/countryatlas/man/figures/README-globe-spin.gif |only countryatlas-2.0.1/countryatlas/man/figures/README-readme-bubble-1.png |only countryatlas-2.0.1/countryatlas/man/figures/README-readme-choropleth-1.png |only countryatlas-2.0.1/countryatlas/man/figures/README-readme-income-1.png |only countryatlas-2.0.1/countryatlas/man/figures/README-readme-join-1.png |only countryatlas-3.0.0/countryatlas/DESCRIPTION | 38 countryatlas-3.0.0/countryatlas/MD5 | 319 - countryatlas-3.0.0/countryatlas/NAMESPACE | 50 countryatlas-3.0.0/countryatlas/NEWS.md | 3052 +++++++++- countryatlas-3.0.0/countryatlas/R/analysis.R | 950 ++- countryatlas-3.0.0/countryatlas/R/cache.R | 195 countryatlas-3.0.0/countryatlas/R/countryatlas-package.R | 82 countryatlas-3.0.0/countryatlas/R/data.R | 149 countryatlas-3.0.0/countryatlas/R/diagnostics.R | 113 countryatlas-3.0.0/countryatlas/R/disputes.R |only countryatlas-3.0.0/countryatlas/R/geometry.R | 929 ++- countryatlas-3.0.0/countryatlas/R/ggsql.R | 186 countryatlas-3.0.0/countryatlas/R/historical.R | 17 countryatlas-3.0.0/countryatlas/R/honest-maps.R |only countryatlas-3.0.0/countryatlas/R/join.R | 218 countryatlas-3.0.0/countryatlas/R/networks.R |only countryatlas-3.0.0/countryatlas/R/overrides.R | 107 countryatlas-3.0.0/countryatlas/R/projections.R |only countryatlas-3.0.0/countryatlas/R/provenance.R |only countryatlas-3.0.0/countryatlas/R/rates.R |only countryatlas-3.0.0/countryatlas/R/reference.R | 194 countryatlas-3.0.0/countryatlas/R/reporting.R |only countryatlas-3.0.0/countryatlas/R/sources.R |only countryatlas-3.0.0/countryatlas/R/spatial-stats.R |only countryatlas-3.0.0/countryatlas/R/standardize.R | 367 + countryatlas-3.0.0/countryatlas/R/subnational.R |only countryatlas-3.0.0/countryatlas/R/time.R |only countryatlas-3.0.0/countryatlas/R/utils.R | 841 ++ countryatlas-3.0.0/countryatlas/R/visualization.R | 2296 +++++++ countryatlas-3.0.0/countryatlas/R/world_data.R | 83 countryatlas-3.0.0/countryatlas/README.md | 637 +- countryatlas-3.0.0/countryatlas/build/partial.rdb |only countryatlas-3.0.0/countryatlas/build/vignette.rds |binary countryatlas-3.0.0/countryatlas/data/common_indicators.rda |binary countryatlas-3.0.0/countryatlas/data/country_groups_history.rda |only countryatlas-3.0.0/countryatlas/data/country_meta.rda |binary countryatlas-3.0.0/countryatlas/data/disputed_territories.rda |only countryatlas-3.0.0/countryatlas/data/historical_codes.rda |binary countryatlas-3.0.0/countryatlas/data/world_tiles.rda |binary countryatlas-3.0.0/countryatlas/inst/CITATION |only countryatlas-3.0.0/countryatlas/inst/WORDLIST |only countryatlas-3.0.0/countryatlas/inst/doc/beyond-the-choropleth.R | 39 countryatlas-3.0.0/countryatlas/inst/doc/beyond-the-choropleth.Rmd | 69 countryatlas-3.0.0/countryatlas/inst/doc/beyond-the-choropleth.html | 148 countryatlas-3.0.0/countryatlas/inst/doc/countryatlas-and-ggsql.Rmd | 14 countryatlas-3.0.0/countryatlas/inst/doc/countryatlas-and-ggsql.html | 26 countryatlas-3.0.0/countryatlas/inst/doc/countryatlas.R | 16 countryatlas-3.0.0/countryatlas/inst/doc/countryatlas.Rmd | 54 countryatlas-3.0.0/countryatlas/inst/doc/countryatlas.html | 111 countryatlas-3.0.0/countryatlas/inst/doc/getting-started.R | 11 countryatlas-3.0.0/countryatlas/inst/doc/getting-started.Rmd | 24 countryatlas-3.0.0/countryatlas/inst/doc/getting-started.html | 18 countryatlas-3.0.0/countryatlas/inst/doc/honest-maps.R |only countryatlas-3.0.0/countryatlas/inst/doc/honest-maps.Rmd |only countryatlas-3.0.0/countryatlas/inst/doc/honest-maps.html |only countryatlas-3.0.0/countryatlas/inst/doc/joining-your-own-data.R | 8 countryatlas-3.0.0/countryatlas/inst/doc/joining-your-own-data.Rmd | 16 countryatlas-3.0.0/countryatlas/inst/doc/joining-your-own-data.html | 20 countryatlas-3.0.0/countryatlas/inst/doc/sf-and-projections.R | 35 countryatlas-3.0.0/countryatlas/inst/doc/sf-and-projections.Rmd | 28 countryatlas-3.0.0/countryatlas/inst/doc/sf-and-projections.html | 81 countryatlas-3.0.0/countryatlas/man/add_indicator.Rd |only countryatlas-3.0.0/countryatlas/man/as_ggsql_source.Rd | 12 countryatlas-3.0.0/countryatlas/man/attach_geometry.Rd | 35 countryatlas-3.0.0/countryatlas/man/audit_coverage.Rd | 24 countryatlas-3.0.0/countryatlas/man/audit_time_coverage.Rd |only countryatlas-3.0.0/countryatlas/man/beta_convergence.Rd | 11 countryatlas-3.0.0/countryatlas/man/bivariate_map.Rd | 3 countryatlas-3.0.0/countryatlas/man/cartogram_diagnostics.Rd |only countryatlas-3.0.0/countryatlas/man/cartogram_map.Rd | 29 countryatlas-3.0.0/countryatlas/man/check_dispute_coverage.Rd |only countryatlas-3.0.0/countryatlas/man/classify_compare.Rd |only countryatlas-3.0.0/countryatlas/man/clear_country_cache.Rd |only countryatlas-3.0.0/countryatlas/man/clear_wdi_cache.Rd | 22 countryatlas-3.0.0/countryatlas/man/compare_sources.Rd |only countryatlas-3.0.0/countryatlas/man/complete_years.Rd | 3 countryatlas-3.0.0/countryatlas/man/convergence_club.Rd |only countryatlas-3.0.0/countryatlas/man/country_borders.Rd | 26 countryatlas-3.0.0/countryatlas/man/country_factsheet.Rd |only countryatlas-3.0.0/countryatlas/man/country_groups.Rd | 42 countryatlas-3.0.0/countryatlas/man/country_groups_history.Rd |only countryatlas-3.0.0/countryatlas/man/country_groups_tbl.Rd | 23 countryatlas-3.0.0/countryatlas/man/country_join.Rd | 31 countryatlas-3.0.0/countryatlas/man/country_join_all.Rd | 14 countryatlas-3.0.0/countryatlas/man/country_meta.Rd | 4 countryatlas-3.0.0/countryatlas/man/country_network.Rd |only countryatlas-3.0.0/countryatlas/man/country_sources.Rd |only countryatlas-3.0.0/countryatlas/man/country_timeline.Rd |only countryatlas-3.0.0/countryatlas/man/country_weights.Rd |only countryatlas-3.0.0/countryatlas/man/countryatlas-package.Rd | 76 countryatlas-3.0.0/countryatlas/man/coverage_map.Rd |only countryatlas-3.0.0/countryatlas/man/deflate.Rd |only countryatlas-3.0.0/countryatlas/man/dispute_policy.Rd |only countryatlas-3.0.0/countryatlas/man/disputed_territories.Rd |only countryatlas-3.0.0/countryatlas/man/fetch_indicator.Rd |only countryatlas-3.0.0/countryatlas/man/figures/README-g-bivariate.png |only countryatlas-3.0.0/countryatlas/man/figures/README-g-bubble.png |only countryatlas-3.0.0/countryatlas/man/figures/README-g-cartogram.png |only countryatlas-3.0.0/countryatlas/man/figures/README-g-categorical.png |only countryatlas-3.0.0/countryatlas/man/figures/README-g-choropleth.png |only countryatlas-3.0.0/countryatlas/man/figures/README-g-dorling.png |only countryatlas-3.0.0/countryatlas/man/figures/README-g-facet.png |only countryatlas-3.0.0/countryatlas/man/figures/README-g-flow.png |only countryatlas-3.0.0/countryatlas/man/figures/README-g-globe.png |only countryatlas-3.0.0/countryatlas/man/figures/README-g-spike.png |only countryatlas-3.0.0/countryatlas/man/figures/README-g-spin.gif |only countryatlas-3.0.0/countryatlas/man/figures/README-g-tile.png |only countryatlas-3.0.0/countryatlas/man/figures/README-h-alpha.png |only countryatlas-3.0.0/countryatlas/man/figures/README-h-classify.png |only countryatlas-3.0.0/countryatlas/man/figures/README-h-coverage.png |only countryatlas-3.0.0/countryatlas/man/figures/README-h-hatched.png |only countryatlas-3.0.0/countryatlas/man/figures/README-h-projections.png |only countryatlas-3.0.0/countryatlas/man/figures/README-h-tissot-ee.png |only countryatlas-3.0.0/countryatlas/man/figures/README-h-tissot-merc.png |only countryatlas-3.0.0/countryatlas/man/figures/README-hero-1.png |only countryatlas-3.0.0/countryatlas/man/figures/README-hook-1.png |only countryatlas-3.0.0/countryatlas/man/figures/README-join-1.png |only countryatlas-3.0.0/countryatlas/man/figures/README-r-grid.png |only countryatlas-3.0.0/countryatlas/man/figures/README-r-history.png |only countryatlas-3.0.0/countryatlas/man/figures/README-r-lisa.png |only countryatlas-3.0.0/countryatlas/man/figures/README-r-od.png |only countryatlas-3.0.0/countryatlas/man/flow_matrix.Rd |only countryatlas-3.0.0/countryatlas/man/gearys_c.Rd |only countryatlas-3.0.0/countryatlas/man/geom_country_labels.Rd | 30 countryatlas-3.0.0/countryatlas/man/getis_ord.Rd |only countryatlas-3.0.0/countryatlas/man/globe_map.Rd | 8 countryatlas-3.0.0/countryatlas/man/gridded_cartogram.Rd |only countryatlas-3.0.0/countryatlas/man/growth_rate.Rd | 11 countryatlas-3.0.0/countryatlas/man/historical_codes.Rd | 10 countryatlas-3.0.0/countryatlas/man/historical_geometry.Rd |only countryatlas-3.0.0/countryatlas/man/in_group.Rd | 13 countryatlas-3.0.0/countryatlas/man/index_to.Rd | 16 countryatlas-3.0.0/countryatlas/man/interactive_map.Rd | 13 countryatlas-3.0.0/countryatlas/man/interpolate_missing.Rd |only countryatlas-3.0.0/countryatlas/man/join_world.Rd | 4 countryatlas-3.0.0/countryatlas/man/lag_by_country.Rd | 5 countryatlas-3.0.0/countryatlas/man/lisa_map.Rd |only countryatlas-3.0.0/countryatlas/man/local_morans.Rd |only countryatlas-3.0.0/countryatlas/man/locate_country.Rd | 6 countryatlas-3.0.0/countryatlas/man/map_provenance.Rd |only countryatlas-3.0.0/countryatlas/man/morans_i.Rd | 65 countryatlas-3.0.0/countryatlas/man/neighbors.Rd | 6 countryatlas-3.0.0/countryatlas/man/nuts_geometry.Rd |only countryatlas-3.0.0/countryatlas/man/od_map.Rd |only countryatlas-3.0.0/countryatlas/man/projection_compare.Rd |only countryatlas-3.0.0/countryatlas/man/projection_distortion.Rd |only countryatlas-3.0.0/countryatlas/man/projection_info.Rd |only countryatlas-3.0.0/countryatlas/man/rank_countries.Rd | 4 countryatlas-3.0.0/countryatlas/man/rate_check.Rd |only countryatlas-3.0.0/countryatlas/man/register_country_source.Rd |only countryatlas-3.0.0/countryatlas/man/remove_country_source.Rd |only countryatlas-3.0.0/countryatlas/man/repair_country_names.Rd | 19 countryatlas-3.0.0/countryatlas/man/share_of_world.Rd | 4 countryatlas-3.0.0/countryatlas/man/smooth_rates.Rd |only countryatlas-3.0.0/countryatlas/man/source_adapters.Rd |only countryatlas-3.0.0/countryatlas/man/spatial_lag.Rd |only countryatlas-3.0.0/countryatlas/man/spin_globe.Rd | 18 countryatlas-3.0.0/countryatlas/man/standardize_subnational.Rd |only countryatlas-3.0.0/countryatlas/man/subnational_map.Rd |only countryatlas-3.0.0/countryatlas/man/theil.Rd | 8 countryatlas-3.0.0/countryatlas/man/tissot_map.Rd |only countryatlas-3.0.0/countryatlas/man/to_ppp.Rd |only countryatlas-3.0.0/countryatlas/man/value_by_alpha_map.Rd |only countryatlas-3.0.0/countryatlas/man/wdj_overrides.Rd | 20 countryatlas-3.0.0/countryatlas/man/world_data.Rd | 13 countryatlas-3.0.0/countryatlas/man/world_geometry.Rd | 26 countryatlas-3.0.0/countryatlas/man/world_map.Rd | 90 countryatlas-3.0.0/countryatlas/man/world_query.Rd | 16 countryatlas-3.0.0/countryatlas/man/world_snapshot.Rd | 5 countryatlas-3.0.0/countryatlas/man/world_table.Rd |only countryatlas-3.0.0/countryatlas/tests/testthat/helper-cran.R |only countryatlas-3.0.0/countryatlas/tests/testthat/helper-geometry.R | 23 countryatlas-3.0.0/countryatlas/tests/testthat/helper-net.R | 21 countryatlas-3.0.0/countryatlas/tests/testthat/setup-null-device.R |only countryatlas-3.0.0/countryatlas/tests/testthat/setup-user-dirs.R | 32 countryatlas-3.0.0/countryatlas/tests/testthat/test-analysis.R | 39 countryatlas-3.0.0/countryatlas/tests/testthat/test-arg-validation.R | 1021 +++ countryatlas-3.0.0/countryatlas/tests/testthat/test-data-integrity.R | 566 + countryatlas-3.0.0/countryatlas/tests/testthat/test-degenerate-input.R | 1692 +++++ countryatlas-3.0.0/countryatlas/tests/testthat/test-diagnostics.R | 1 countryatlas-3.0.0/countryatlas/tests/testthat/test-features-2.0.0.R | 57 countryatlas-3.0.0/countryatlas/tests/testthat/test-features-2.1.0.R |only countryatlas-3.0.0/countryatlas/tests/testthat/test-features-3.0.0.R |only countryatlas-3.0.0/countryatlas/tests/testthat/test-fetch-assembly.R | 56 countryatlas-3.0.0/countryatlas/tests/testthat/test-geometry.R | 264 countryatlas-3.0.0/countryatlas/tests/testthat/test-ggsql.R | 16 countryatlas-3.0.0/countryatlas/tests/testthat/test-helper-invariants.R |only countryatlas-3.0.0/countryatlas/tests/testthat/test-numeric-anchors.R | 1019 +++ countryatlas-3.0.0/countryatlas/tests/testthat/test-parallel.R | 5 countryatlas-3.0.0/countryatlas/tests/testthat/test-polish-3.0.0.R |only countryatlas-3.0.0/countryatlas/tests/testthat/test-pre-cran-polish.R | 344 - countryatlas-3.0.0/countryatlas/tests/testthat/test-reference.R | 24 countryatlas-3.0.0/countryatlas/tests/testthat/test-return-contracts.R | 227 countryatlas-3.0.0/countryatlas/tests/testthat/test-review-3.0.0.R |only countryatlas-3.0.0/countryatlas/tests/testthat/test-second-wave.R | 14 countryatlas-3.0.0/countryatlas/tests/testthat/test-standardize.R | 129 countryatlas-3.0.0/countryatlas/tests/testthat/test-untested-exports.R | 80 countryatlas-3.0.0/countryatlas/tests/testthat/test-visual-regression.R |only countryatlas-3.0.0/countryatlas/tests/testthat/test-visualization.R | 142 countryatlas-3.0.0/countryatlas/tests/testthat/test-world-data.R | 16 countryatlas-3.0.0/countryatlas/vignettes/beyond-the-choropleth.Rmd | 69 countryatlas-3.0.0/countryatlas/vignettes/countryatlas-and-ggsql.Rmd | 14 countryatlas-3.0.0/countryatlas/vignettes/countryatlas.Rmd | 54 countryatlas-3.0.0/countryatlas/vignettes/getting-started.Rmd | 24 countryatlas-3.0.0/countryatlas/vignettes/honest-maps.Rmd |only countryatlas-3.0.0/countryatlas/vignettes/joining-your-own-data.Rmd | 16 countryatlas-3.0.0/countryatlas/vignettes/sf-and-projections.Rmd | 28 213 files changed, 16524 insertions(+), 1775 deletions(-)
Title: Risk Assessment Plot and Reclassification Metrics
Description: Assessing the comparative performance of two logistic regression models or results of such models or classification models. Discrimination metrics include Integrated Discrimination Improvement (IDI), Net Reclassification Improvement (NRI), and difference in Area Under the Curves (AUCs), Brier scores and Brier skill. Plots include Risk Assessment Plots, Decision curves and Calibration plots. Methods are described in Pickering and Endre (2012) <doi:10.2215/CJN.09590911> and Pencina et al. (2008) <doi:10.1002/sim.2929>.
Author: John W Pickering [aut],
Dimitrios Doudesis [aut],
Daniel Perez Vicencio [cre]
Maintainer: Daniel Perez Vicencio <dvicencio947@gmail.com>
Diff between raptools versions 1.23.0 dated 2025-12-09 and 1.24.0 dated 2026-10-01
DESCRIPTION | 8 MD5 | 18 + NAMESPACE | 1 NEWS.md | 20 + R/raptools.R | 279 +++++++++++++++++---------- README.md | 116 +++++++---- man/figures/README-ggcalibrate-1.png |binary man/figures/README-ggcalibrate_BA-1.png |only man/figures/README-ggcalibrate_BA_zoom-1.png |only man/figures/README-ggcalibrate_actuals-1.png |only man/ggcalibrate.Rd | 29 ++ man/ggcalibrate_BA.Rd |only 12 files changed, 317 insertions(+), 154 deletions(-)
Title: Likelihood-Based Inference for Joint Modeling of Correlated
Count and Binary Outcomes with Extra Variability and Zeros
Description: Inference approach for jointly modeling correlated count and binary outcomes. This formulation allows simultaneous modeling of zero inflation via the Bernoulli component while providing a more accurate assessment of the Hierarchical Zero-Inflated Poisson's parsimony (Lizandra C. Fabio, Jalmar M. F. Carrasco, Victor H. Lachos and Ming-Hui Chen, Likelihood-based inference for joint modeling of correlated count and binary outcomes with extra variability and zeros, 2026, under submission).
Author: Lizandra C. Fabio [aut],
Jalmar M. F. Carrasco [aut, cre],
Victor H. Lachos [aut],
Ming-Hui Chen [aut]
Maintainer: Jalmar M. F. Carrasco <carrasco.jalmar@ufba.br>
Diff between HZIP versions 0.1.2 dated 2026-06-02 and 0.1.3 dated 2026-10-01
HZIP-0.1.2/HZIP/R/generics.R |only HZIP-0.1.2/HZIP/R/rHZIP.R |only HZIP-0.1.2/HZIP/man/envelope.HZIP.Rd |only HZIP-0.1.2/HZIP/man/print.hzip_test.Rd |only HZIP-0.1.2/HZIP/man/rHZIP.Rd |only HZIP-0.1.2/HZIP/man/residuals.HZIP.Rd |only HZIP-0.1.2/HZIP/man/simulate.HZIP.Rd |only HZIP-0.1.2/HZIP/man/testDisp.HZIP.Rd |only HZIP-0.1.2/HZIP/man/testZI.HZIP.Rd |only HZIP-0.1.3/HZIP/DESCRIPTION | 8 HZIP-0.1.3/HZIP/MD5 | 47 - HZIP-0.1.3/HZIP/NAMESPACE | 96 +-- HZIP-0.1.3/HZIP/R/RcppExports.R | 70 +- HZIP-0.1.3/HZIP/R/envelope.R | 28 HZIP-0.1.3/HZIP/R/hzip.R | 1005 ++++++++++++++++----------------- HZIP-0.1.3/HZIP/R/residuals.R | 456 +++++++------- HZIP-0.1.3/HZIP/R/rhzip.R |only HZIP-0.1.3/HZIP/R/salamanders.R | 72 +- HZIP-0.1.3/HZIP/R/simulate.R | 207 +++--- HZIP-0.1.3/HZIP/R/testDisp.R | 25 HZIP-0.1.3/HZIP/R/testZI.R | 25 HZIP-0.1.3/HZIP/R/utils.R | 109 +-- HZIP-0.1.3/HZIP/R/zzz.R | 15 HZIP-0.1.3/HZIP/data/salamanders.rda |binary HZIP-0.1.3/HZIP/man/envelope.Rd |only HZIP-0.1.3/HZIP/man/hzip.Rd | 21 HZIP-0.1.3/HZIP/man/residuals.hzip.Rd |only HZIP-0.1.3/HZIP/man/rhzip.Rd |only HZIP-0.1.3/HZIP/man/salamanders.Rd | 14 HZIP-0.1.3/HZIP/man/testDisp.Rd | 69 ++ HZIP-0.1.3/HZIP/man/testZI.Rd | 68 ++ 31 files changed, 1235 insertions(+), 1100 deletions(-)
Title: Download 'Eurostat' 'GISCO' Spatial Data
Description: Tools to download global and European spatial data from the
'Eurostat' 'GISCO' (Geographic Information System of the Commission)
data distribution <https://ec.europa.eu/eurostat/web/gisco>. The
package provides helpers for country boundaries, Nomenclature of
Territorial Units for Statistics ('NUTS') regions, administrative
units, statistical units, transport networks, basic service locations
and other 'GISCO' datasets. This package is neither affiliated with
nor endorsed by 'Eurostat'.
Author: Diego Hernangomez [aut, cre, cph] ,
Eurostat [cph] ,
EuroGeographics [cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between giscoR versions 1.2.0 dated 2026-08-27 and 1.3.0 dated 2026-10-01
DESCRIPTION | 15 - MD5 | 214 ++++++++-------- NAMESPACE | 1 NEWS.md | 101 +++---- R/data.R | 45 +-- R/gisco-address-api.R | 110 +++++++- R/gisco-attributions.R | 6 R/gisco-bulk-download.R | 4 R/gisco-cache.R | 8 R/gisco-check-access.R | 7 R/gisco-get-cached-db.R | 14 - R/gisco-get-census.R | 2 R/gisco-get-coastal-lines.R | 2 R/gisco-get-communes.R | 16 - R/gisco-get-countries.R | 17 - R/gisco-get-grid.R | 2 R/gisco-get-lau.R | 12 R/gisco-get-metadata.R | 2 R/gisco-get-nuts.R | 16 - R/gisco-get-postal-codes.R | 2 R/gisco-get-unit-country.R | 4 R/gisco-get-units.R | 3 R/gisco-get-urban-audit.R | 4 R/gisco-id-api.R | 104 +++++--- R/utils-country.R | 4 R/utils-dataset.R | 12 R/utils-request.R | 55 ++-- R/utils-sf.R | 28 +- R/utils-units.R | 5 R/utils-url.R | 103 ++++++- R/utils.R | 14 - README.md | 18 - build/stage23.rdb |binary data/gisco_db.rda |binary inst/WORDLIST | 14 - inst/doc/apis.html | 150 +++++------ inst/doc/apis.qmd | 97 ++++--- inst/doc/giscoR.html | 14 - inst/doc/giscoR.qmd | 18 - inst/schemaorg.json | 4 man/chunks/address_api.Rmd | 24 + man/chunks/education_meta.Rmd | 8 man/chunks/healthcare_meta.Rmd | 4 man/figures/README-resolution-map-1.png |binary man/figures/README-thematic-map-1.png |binary man/giscoR-package.Rd | 2 man/gisco_address_api.Rd | 80 ++++-- man/gisco_attributions.Rd | 6 man/gisco_bulk_download.Rd | 4 man/gisco_coastal_lines.Rd | 4 man/gisco_countries_2024.Rd | 6 man/gisco_countrycode.Rd | 17 - man/gisco_db.Rd | 6 man/gisco_get_airports.Rd | 4 man/gisco_get_census.Rd | 6 man/gisco_get_coastal_lines.Rd | 9 man/gisco_get_communes.Rd | 20 - man/gisco_get_countries.Rd | 13 - man/gisco_get_education.Rd | 15 - man/gisco_get_grid.Rd | 6 man/gisco_get_healthcare.Rd | 11 man/gisco_get_lau.Rd | 16 - man/gisco_get_nuts.Rd | 19 - man/gisco_get_ports.Rd | 4 man/gisco_get_postal_codes.Rd | 6 man/gisco_get_unit.Rd | 11 man/gisco_get_units.Rd | 9 man/gisco_get_urban_audit.Rd | 11 man/gisco_id_api.Rd | 84 +++--- man/gisco_nuts_2024.Rd | 14 - man/gisco_set_cache_dir.Rd | 2 tests/testthat/_snaps/gisco-address-api.md | 4 tests/testthat/_snaps/gisco-bulk-download.md | 4 tests/testthat/_snaps/gisco-get-cached-db.md | 4 tests/testthat/_snaps/gisco-get-metadata.md | 4 tests/testthat/_snaps/gisco-get-nuts.md | 4 tests/testthat/_snaps/gisco-get-unit-country.md | 4 tests/testthat/_snaps/gisco-get-unit-nuts.md | 4 tests/testthat/_snaps/gisco-get-unit-urban-audit.md | 4 tests/testthat/_snaps/gisco-id-api.md | 21 - tests/testthat/_snaps/utils-url.md | 16 - tests/testthat/helper.R | 4 tests/testthat/test-docs.R | 2 tests/testthat/test-gisco-address-api.R | 258 +++++++++++++++++++- tests/testthat/test-gisco-bulk-download.R | 8 tests/testthat/test-gisco-cache.R | 8 tests/testthat/test-gisco-check-access.R | 25 + tests/testthat/test-gisco-get-cached-db.R | 14 - tests/testthat/test-gisco-get-coastal-lines.R | 2 tests/testthat/test-gisco-get-countries.R | 2 tests/testthat/test-gisco-get-metadata.R | 8 tests/testthat/test-gisco-get-nuts.R | 14 - tests/testthat/test-gisco-get-unit-country.R | 10 tests/testthat/test-gisco-get-unit-nuts.R | 10 tests/testthat/test-gisco-get-unit-urban-audit.R | 10 tests/testthat/test-gisco-get-units.R | 9 tests/testthat/test-gisco-get-urban-audit.R | 2 tests/testthat/test-gisco-id-api.R | 158 ++++++++++-- tests/testthat/test-utils-sf.R | 6 tests/testthat/test-utils-url.R | 226 ++++++++++++++++- tests/testthat/test-utils.R | 28 +- vignettes/apis.qmd | 97 ++++--- vignettes/fig-address-api-1.png |binary vignettes/fig-africa-1.png |binary vignettes/fig-api-id-1.png |binary vignettes/fig-country-1.png |binary vignettes/fig-giscor-1.png |binary vignettes/giscoR.qmd | 18 - 108 files changed, 1779 insertions(+), 877 deletions(-)
Title: Connecting to Various Database Platforms
Description: An R 'DataBase Interface' ('DBI') compatible interface to various database platforms ('PostgreSQL', 'Oracle', 'Microsoft SQL Server',
'Amazon Redshift', 'Microsoft Parallel Database Warehouse', 'IBM Netezza', 'Apache Impala', 'Google BigQuery', 'Snowflake', 'Spark', 'SQLite',
and 'InterSystems IRIS'). Also includes support for fetching data as 'Andromeda' objects. Uses either 'Java Database Connectivity' ('JDBC') or
other 'DBI' drivers to connect to databases.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Adam Black [aut],
Observational Health Data Science and Informatics [cph],
Microsoft Inc. [cph] ,
PostgreSQL Global Development Group [cph] ,
Oracle Inc. [cph] ,
Amazon Inc. [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between DatabaseConnector versions 7.2.0 dated 2026-06-26 and 8.0.0 dated 2026-10-01
DESCRIPTION | 12 - MD5 | 63 +++--- NAMESPACE | 44 ++-- NEWS.md | 22 ++ R/Andromeda.R | 9 R/BulkLoad.R | 14 + R/Connect.R | 196 ++++++++++--------- R/Drivers.R | 6 R/Sql.R | 38 +++ README.md | 5 build/vignette.rds |binary inst/csv/jarChecksum.txt | 2 inst/doc/Connecting.pdf |binary inst/doc/DbiAndDbplyr.pdf |binary inst/doc/Querying.pdf |binary inst/java/DatabaseConnector.jar |binary inst/sql/sql_server/sparkCopy.sql | 5 java/org/ohdsi/databaseConnector/Authentication.java | 44 ++-- man/connect.Rd | 14 + man/createConnectionDetails.Rd | 13 + man/downloadJdbcDrivers.Rd | 2 man/executeSql.Rd | 9 man/querySql.Rd | 7 man/querySqlToAndromeda.Rd | 7 man/renderTranslateExecuteSql.Rd | 9 man/renderTranslateQueryApplyBatched.Rd | 7 man/renderTranslateQuerySql.Rd | 7 man/renderTranslateQuerySqlToAndromeda.Rd | 7 tests/testthat/setup.R | 26 +- tests/testthat/test-connection.R | 20 + tests/testthat/test-errorReportFileLocation.R |only tests/testthat/test-fetchResults.R | 2 tests/testthat/test-insertTable.R | 3 33 files changed, 371 insertions(+), 222 deletions(-)
More information about DatabaseConnector at CRAN
Permanent link
Title: Three-Step Estimation for Latent Class Analysis
Description: Bias-adjusted three-step estimation of latent class models with
covariates and distal outcomes. The latent class measurement model is
estimated first, with 'multilevLCA' (Lyrvall et al., 2025)
<doi:10.1080/00273171.2025.2473935>, and held fixed; observations are then
classified; and the classes are related to covariates and distal outcomes
with the maximum likelihood correction of Vermunt (2010)
<doi:10.1093/pan/mpq025> and Bakk, Tekle and Vermunt (2013)
<doi:10.1177/0081175012470644>, or the correction of Bolck, Croon and
Hagenaars (2004) <doi:10.1093/pan/mph001>. Standard errors account for the
uncertainty of the measurement model (Bakk, Oberski and Vermunt, 2014)
<doi:10.1093/pan/mpu003>. Includes class enumeration, modal and
proportional class assignment, covariate formulas, Gaussian, Poisson,
binomial, and multinomial distal outcomes, the two-step estimator of Bakk
and Kuha (2018) <doi:10.1007/s11336-017-9592-7>, measurement models
applied to ne [...truncated...]
Author: Sam Lee [aut, cre, cph] ,
Jay Goodliffe [aut, cph]
Maintainer: Sam Lee <samlee@arizona.edu>
Diff between tseLCA versions 1.1.1 dated 2026-09-23 and 2.0.0 dated 2026-10-01
tseLCA-1.1.1/tseLCA/inst/examples |only tseLCA-1.1.1/tseLCA/man/coef.tseLCA_measurement.Rd |only tseLCA-1.1.1/tseLCA/man/compress_Y.Rd |only tseLCA-1.1.1/tseLCA/man/plot.tseLCA_measurement.Rd |only tseLCA-1.1.1/tseLCA/man/print.tseLCA_measurement.Rd |only tseLCA-1.1.1/tseLCA/man/summary.tseLCA_measurement.Rd |only tseLCA-1.1.1/tseLCA/man/vcov.tseLCA_measurement.Rd |only tseLCA-2.0.0/tseLCA/DESCRIPTION | 29 tseLCA-2.0.0/tseLCA/MD5 | 113 tseLCA-2.0.0/tseLCA/NAMESPACE | 156 tseLCA-2.0.0/tseLCA/NEWS.md | 574 + tseLCA-2.0.0/tseLCA/R/clean.R | 357 - tseLCA-2.0.0/tseLCA/R/control.R |only tseLCA-2.0.0/tseLCA/R/deprecated.R |only tseLCA-2.0.0/tseLCA/R/distal-ml.R |only tseLCA-2.0.0/tseLCA/R/imports.R | 3 tseLCA-2.0.0/tseLCA/R/lca_measurement.R | 104 tseLCA-2.0.0/tseLCA/R/likelihood.R |only tseLCA-2.0.0/tseLCA/R/methods-tseLCA.R |only tseLCA-2.0.0/tseLCA/R/step1.R |only tseLCA-2.0.0/tseLCA/R/step2.R |only tseLCA-2.0.0/tseLCA/R/step3-covariate.R |only tseLCA-2.0.0/tseLCA/R/step3-distal.R |only tseLCA-2.0.0/tseLCA/R/three_step.R | 4475 +-------------- tseLCA-2.0.0/tseLCA/R/tseLCA-package.R | 274 tseLCA-2.0.0/tseLCA/R/tseLCA.R |only tseLCA-2.0.0/tseLCA/R/tse_classify.R |only tseLCA-2.0.0/tseLCA/R/tse_lca.R |only tseLCA-2.0.0/tseLCA/R/tse_structural.R |only tseLCA-2.0.0/tseLCA/R/vcov.R |only tseLCA-2.0.0/tseLCA/README.md | 112 tseLCA-2.0.0/tseLCA/inst/CITATION | 168 tseLCA-2.0.0/tseLCA/inst/WORDLIST | 79 tseLCA-2.0.0/tseLCA/inst/doc/tseLCA-workflow.R | 534 - tseLCA-2.0.0/tseLCA/inst/doc/tseLCA-workflow.Rmd | 1121 +-- tseLCA-2.0.0/tseLCA/inst/doc/tseLCA-workflow.html | 1738 +---- tseLCA-2.0.0/tseLCA/man/anova.tseLCA_covariate.Rd |only tseLCA-2.0.0/tseLCA/man/as_tse_lca.Rd |only tseLCA-2.0.0/tseLCA/man/best_model.Rd |only tseLCA-2.0.0/tseLCA/man/class_sizes.Rd |only tseLCA-2.0.0/tseLCA/man/clean_data.Rd | 114 tseLCA-2.0.0/tseLCA/man/coef.tseLCA_structural.Rd |only tseLCA-2.0.0/tseLCA/man/extract_Y_from_mU.Rd | 74 tseLCA-2.0.0/tseLCA/man/fitZ_from_fit0.Rd | 195 tseLCA-2.0.0/tseLCA/man/fitZ_from_multiLCA.Rd | 232 tseLCA-2.0.0/tseLCA/man/lca_indiv_varmat.Rd | 162 tseLCA-2.0.0/tseLCA/man/lca_step1.Rd | 240 tseLCA-2.0.0/tseLCA/man/lca_step1_startval.Rd | 262 tseLCA-2.0.0/tseLCA/man/logLik.tseLCA.Rd |only tseLCA-2.0.0/tseLCA/man/measurement.Rd |only tseLCA-2.0.0/tseLCA/man/omnibus_test.Rd | 107 tseLCA-2.0.0/tseLCA/man/plot.tseLCA.Rd |only tseLCA-2.0.0/tseLCA/man/posterior.Rd |only tseLCA-2.0.0/tseLCA/man/predict.tseLCA_covariate.Rd |only tseLCA-2.0.0/tseLCA/man/predict.tseLCA_measurement.Rd |only tseLCA-2.0.0/tseLCA/man/relevel.tseLCA_covariate.Rd |only tseLCA-2.0.0/tseLCA/man/summary.tseLCA_structural.Rd |only tseLCA-2.0.0/tseLCA/man/three_step.Rd | 759 +- tseLCA-2.0.0/tseLCA/man/tseLCA-package.Rd | 315 - tseLCA-2.0.0/tseLCA/man/tseLCA.Rd |only tseLCA-2.0.0/tseLCA/man/tse_classify.Rd |only tseLCA-2.0.0/tseLCA/man/tse_control.Rd |only tseLCA-2.0.0/tseLCA/man/tse_covariate.Rd |only tseLCA-2.0.0/tseLCA/man/tse_distal.Rd |only tseLCA-2.0.0/tseLCA/man/tse_lca.Rd |only tseLCA-2.0.0/tseLCA/man/tse_twostep.Rd |only tseLCA-2.0.0/tseLCA/man/vcov.tseLCA_structural.Rd |only tseLCA-2.0.0/tseLCA/tests/testthat/fixtures |only tseLCA-2.0.0/tseLCA/tests/testthat/helper-options.R |only tseLCA-2.0.0/tseLCA/tests/testthat/helper-v1-reference.R |only tseLCA-2.0.0/tseLCA/tests/testthat/test-bugfixes-2.0.R |only tseLCA-2.0.0/tseLCA/tests/testthat/test-classify.R |only tseLCA-2.0.0/tseLCA/tests/testthat/test-data.R |only tseLCA-2.0.0/tseLCA/tests/testthat/test-deprecated.R |only tseLCA-2.0.0/tseLCA/tests/testthat/test-dgp.R | 232 tseLCA-2.0.0/tseLCA/tests/testthat/test-distal-ml.R |only tseLCA-2.0.0/tseLCA/tests/testthat/test-integration.R | 2369 +++---- tseLCA-2.0.0/tseLCA/tests/testthat/test-lca.R |only tseLCA-2.0.0/tseLCA/tests/testthat/test-methods.R |only tseLCA-2.0.0/tseLCA/tests/testthat/test-regression-v1.R |only tseLCA-2.0.0/tseLCA/tests/testthat/test-s3.R | 485 - tseLCA-2.0.0/tseLCA/tests/testthat/test-structural.R |only tseLCA-2.0.0/tseLCA/tests/testthat/test-wrapper.R |only tseLCA-2.0.0/tseLCA/vignettes/tseLCA-workflow.Rmd | 1121 +-- 84 files changed, 5833 insertions(+), 10671 deletions(-)
Title: Multivariate Comparative Tools for Fitting Evolutionary Models
to Morphometric Data
Description: Fits multivariate (Brownian Motion, Early Burst, ACDC, Ornstein-Uhlenbeck and Shifts) models of continuous traits evolution on trees and time series. 'mvMORPH' also proposes high-dimensional multivariate comparative tools (linear models using Generalized Least Squares and multivariate tests) based on penalized likelihood and Empirical Bayes approaches. See
Clavel et al. (2015) <DOI:10.1111/2041-210X.12420>, Clavel et al. (2019) <DOI:10.1093/sysbio/syy045>, Clavel & Morlon (2020) <DOI:10.1093/sysbio/syaa010>, and Montoya et al. (2026) <DOI:10.1093/sysbio/syag051>.
Author: Julien Clavel [aut, cre],
with contributions from Aaron King [aut],
Emmanuel Paradis [aut],
Paola Montoya [aut]
Maintainer: Julien Clavel <julien.clavel@hotmail.fr>
Diff between mvMORPH versions 1.2.2 dated 2026-09-24 and 1.2.3 dated 2026-10-01
DESCRIPTION | 14 +++++--- MD5 | 34 ++++++++++----------- NAMESPACE | 1 NEWS.md | 7 +++- R/fun.r | 16 +++++++--- R/mvgls.pca.r | 17 ++++++++-- R/p3ca.r | 2 - R/penalized.r | 64 +++++++++++++++++++++------------------- R/plot_methods.r | 26 ++++++++-------- R/utils.r | 3 + R/zzz.r | 2 - README.md | 10 +++--- inst/doc/How_to_use_mvMORPH.pdf |binary inst/doc/tutorial_mvMORPH.pdf |binary man/mvSIM.Rd | 19 ++++++++++- man/mvgls.Rd | 6 +++ man/p3ca.Rd | 6 +-- man/pcLoadings.Rd | 5 +++ 18 files changed, 148 insertions(+), 84 deletions(-)
Title: Latent Interaction (and Moderation) Analysis in Structural
Equation Models (SEM)
Description: Estimation of interaction (i.e., moderation) effects between latent variables
in structural equation models (SEM).
The supported methods are:
The constrained approach (Algina & Moulder, 2001).
The unconstrained approach (Marsh et al., 2004).
The residual centering approach (Little et al., 2006).
The double centering approach (Lin et al., 2010).
The latent moderated structural equations (LMS) approach (Klein & Moosbrugger, 2000).
The quasi-maximum likelihood (QML) approach (Klein & Muthén, 2007)
The constrained- unconstrained, residual- and double centering- approaches
are estimated via 'lavaan' (Rosseel, 2012), whilst the LMS- and QML- approaches
are estimated via 'modsem' it self. Alternatively model can be
estimated via 'Mplus' (Muthén & Muthén, 1998-2017).
References:
Algina, J., & Moulder, B. C. (2001).
<doi:10.1207/S15328007SEM0801_3>.
"A note on estimating the Jöreskog-Yang model for latent variable interaction using 'LISREL' 8.3."
Klein, A., & Moosb [...truncated...]
Author: Kjell Solem Slupphaug [aut, cre] ,
Mehmet Mehmetoglu [ctb] ,
Matthias Mittner [ctb]
Maintainer: Kjell Solem Slupphaug <slupphaugkjell@gmail.com>
Diff between modsem versions 1.0.22 dated 2026-08-21 and 1.0.23 dated 2026-10-01
modsem-1.0.22/modsem/tests/testthat/mplusResults.inp |only modsem-1.0.22/modsem/tests/testthat/mplusResults.out |only modsem-1.0.22/modsem/tests/testthat/mplusResults_034950db9f6a046dcbf4348715ec98cb.dat |only modsem-1.0.22/modsem/tests/testthat/mplusResults_0cdf413a1525cdd43e084da9823487b8.dat |only modsem-1.0.22/modsem/tests/testthat/mplusResults_1902fe5a594fdff027c6f333f1b42374.dat |only modsem-1.0.22/modsem/tests/testthat/mplusResults_1d99a51710dbe72680bd2167846dfc39.dat |only modsem-1.0.22/modsem/tests/testthat/mplusResults_2f55eb38256759e6ebc9b0699ecf1d13.dat |only modsem-1.0.22/modsem/tests/testthat/mplusResults_3d0f8823f6af05dbc789d0ed60a54090.dat |only modsem-1.0.22/modsem/tests/testthat/mplusResults_6507283a847451aff127c84c87ebd81b.dat |only modsem-1.0.22/modsem/tests/testthat/mplusResults_6bb11f99c9f63d831155403fa8debc11.dat |only modsem-1.0.22/modsem/tests/testthat/mplusResults_ad18af3b9c89a45fac7dc52df3607909.dat |only modsem-1.0.22/modsem/tests/testthat/mplusResults_c0d691516a85482200cebd668c136807.dat |only modsem-1.0.22/modsem/tests/testthat/mplusResults_cef7da5bcf84a819ec0f66c18d6ea355.dat |only modsem-1.0.22/modsem/tests/testthat/mplusResults_d4fd46d7e74eb5a0b73e2cb1369c4b51.dat |only modsem-1.0.22/modsem/tests/testthat/mplusResults_d7630a570fe7052efa569a29540ef19e.dat |only modsem-1.0.22/modsem/tests/testthat/mplusResults_e8725a6185cbe0286c28c26f935f24e2.dat |only modsem-1.0.23/modsem/DESCRIPTION | 6 modsem-1.0.23/modsem/MD5 | 56 -- modsem-1.0.23/modsem/R/lav_syntax_functions.R | 21 modsem-1.0.23/modsem/R/modsem_da.R | 31 - modsem-1.0.23/modsem/R/modsem_mplus.R | 9 modsem-1.0.23/modsem/R/ordered_mc_correction.R | 273 +--------- modsem-1.0.23/modsem/R/parser.R | 19 modsem-1.0.23/modsem/R/plot_interaction.R | 32 - modsem-1.0.23/modsem/R/simple_slopes.R | 95 ++- modsem-1.0.23/modsem/R/tokenizer.R | 20 modsem-1.0.23/modsem/R/utils_da.R | 2 modsem-1.0.23/modsem/build/vignette.rds |binary modsem-1.0.23/modsem/inst/doc/customize_plot_interactions.html | 8 modsem-1.0.23/modsem/inst/doc/estimation_lms.html | 6 modsem-1.0.23/modsem/inst/doc/observed_lms_qml.html | 6 modsem-1.0.23/modsem/inst/doc/plot_interactions.html | 4 modsem-1.0.23/modsem/inst/doc/ri_clpm_lms.R |only modsem-1.0.23/modsem/inst/doc/ri_clpm_lms.Rmd |only modsem-1.0.23/modsem/inst/doc/ri_clpm_lms.html |only modsem-1.0.23/modsem/man/modsem_da.Rd | 24 modsem-1.0.23/modsem/man/plot_interaction.Rd | 8 modsem-1.0.23/modsem/man/simple_slopes.Rd | 5 modsem-1.0.23/modsem/vignettes/ri_clpm_lms.Rmd |only 39 files changed, 260 insertions(+), 365 deletions(-)
Title: Unifying Estimation Results with Binary Dependent Variables
Description: Calculate unified measures
that quantify the effect of a covariate on a binary dependent variable
(e.g., for meta-analyses).
This can be particularly important
if the estimation results are obtained
with different models/estimators
(e.g., linear probability model, logit, probit, ...)
and/or with different transformations of the explanatory variable of interest
(e.g., linear, quadratic, interval-coded, ...).
The calculated unified measures are:
(a) semi-elasticities of linear, quadratic, or interval-coded covariates and
(b) effects of linear, quadratic, interval-coded, or categorical covariates
when a linear or quadratic covariate changes between distinct intervals,
the reference category of a categorical variable
or the reference interval of an interval-coded variable needs to be changed,
or some categories of a categorical covariate
or some intervals of an interval-coded covariate need to be grouped together.
Approximate standard errors of the unified measures are also calculated.
All [...truncated...]
Author: Arne Henningsen [aut, cre] ,
Geraldine Henningsen [aut]
Maintainer: Arne Henningsen <arne.henningsen@gmail.com>
Diff between urbin versions 0.1-16 dated 2025-07-06 and 0.1-18 dated 2026-10-01
DESCRIPTION | 8 +++--- MD5 | 54 +++++++++++++++++++++--------------------- NEWS | 7 +++++ build/vignette.rds |binary inst/doc/ExtendedAppendix.pdf |binary inst/doc/Manuscript.Rnw | 4 +-- inst/doc/Manuscript.pdf |binary tests/logit.R | 8 +++--- tests/logit.Rout.save | 36 +++++----------------------- tests/logitEffCat.R | 2 - tests/logitEffCat.Rout.save | 11 +++----- tests/logitEffInt.R | 2 - tests/logitEffInt.Rout.save | 11 +++----- tests/logitEla.R | 2 - tests/logitEla.Rout.save | 11 +++----- tests/logitElaInt.R | 2 - tests/logitElaInt.Rout.save | 11 +++----- tests/lpm.R | 6 ++-- tests/lpm.Rout.save | 23 +++++------------ tests/mlogit.R | 8 +++--- tests/mlogit.Rout.save | 23 +++++------------ tests/mvprobit.R | 8 +++--- tests/mvprobit.Rout.save | 28 ++++++--------------- tests/oprobit.R | 8 +++--- tests/oprobit.Rout.save | 26 ++++++-------------- tests/probit.R | 8 +++--- tests/probit.Rout.save | 36 +++++----------------------- vignettes/Manuscript.Rnw | 4 +-- 28 files changed, 133 insertions(+), 214 deletions(-)
Title: Extract Trends from Time Series
Description: Provides a unified interface to extract trends, cycles, and
seasonal components from monthly and quarterly time series using
established filters and smoothers from econometrics and signal extraction,
with frequency-aware defaults for common economic frequencies. Rolling and
year-to-date aggregations are also available, including the compounded
accumulation of rates of change.
Author: Vinicius Oike [aut, cre, cph]
Maintainer: Vinicius Oike <viniciusoike@gmail.com>
Diff between trendseries versions 1.4.0 dated 2026-07-13 and 1.7.0 dated 2026-10-01
trendseries-1.4.0/trendseries/inst/doc/augment-trends.R |only trendseries-1.4.0/trendseries/inst/doc/augment-trends.Rmd |only trendseries-1.4.0/trendseries/inst/doc/augment-trends.html |only trendseries-1.4.0/trendseries/inst/doc/decompose-series.R |only trendseries-1.4.0/trendseries/inst/doc/decompose-series.Rmd |only trendseries-1.4.0/trendseries/inst/doc/decompose-series.html |only trendseries-1.4.0/trendseries/inst/doc/detrend-series.R |only trendseries-1.4.0/trendseries/inst/doc/detrend-series.Rmd |only trendseries-1.4.0/trendseries/inst/doc/detrend-series.html |only trendseries-1.4.0/trendseries/inst/doc/econometric-filters.R |only trendseries-1.4.0/trendseries/inst/doc/econometric-filters.Rmd |only trendseries-1.4.0/trendseries/inst/doc/econometric-filters.html |only trendseries-1.4.0/trendseries/inst/doc/methods.R |only trendseries-1.4.0/trendseries/inst/doc/methods.Rmd |only trendseries-1.4.0/trendseries/inst/doc/methods.html |only trendseries-1.4.0/trendseries/inst/doc/moving-averages.R |only trendseries-1.4.0/trendseries/inst/doc/moving-averages.Rmd |only trendseries-1.4.0/trendseries/inst/doc/moving-averages.html |only trendseries-1.4.0/trendseries/inst/figures |only trendseries-1.4.0/trendseries/man/figures/README-unnamed-chunk-4-1.png |only trendseries-1.4.0/trendseries/vignettes/augment-trends.Rmd |only trendseries-1.4.0/trendseries/vignettes/decompose-series.Rmd |only trendseries-1.4.0/trendseries/vignettes/detrend-series.Rmd |only trendseries-1.4.0/trendseries/vignettes/econometric-filters.Rmd |only trendseries-1.4.0/trendseries/vignettes/methods.Rmd |only trendseries-1.4.0/trendseries/vignettes/moving-averages.Rmd |only trendseries-1.7.0/trendseries/DESCRIPTION | 18 trendseries-1.7.0/trendseries/MD5 | 159 +- trendseries-1.7.0/trendseries/NAMESPACE | 10 trendseries-1.7.0/trendseries/NEWS.md | 433 ++++-- trendseries-1.7.0/trendseries/R/augment_rolling.R |only trendseries-1.7.0/trendseries/R/augment_trends.R | 624 +++++---- trendseries-1.7.0/trendseries/R/converters.R | 654 ++++++++-- trendseries-1.7.0/trendseries/R/data.R | 391 ++++- trendseries-1.7.0/trendseries/R/decompose_series.R | 114 + trendseries-1.7.0/trendseries/R/deseason_series.R | 14 trendseries-1.7.0/trendseries/R/detrend_series.R | 68 - trendseries-1.7.0/trendseries/R/extract_trends.R | 199 ++- trendseries-1.7.0/trendseries/R/filters_econometric.R | 228 +-- trendseries-1.7.0/trendseries/R/filters_ma.R | 117 - trendseries-1.7.0/trendseries/R/filters_signal.R | 113 - trendseries-1.7.0/trendseries/R/filters_smoothing.R | 48 trendseries-1.7.0/trendseries/R/index_series.R |only trendseries-1.7.0/trendseries/R/method_registry.R | 139 +- trendseries-1.7.0/trendseries/R/roll_series.R |only trendseries-1.7.0/trendseries/R/tsibble.R |only trendseries-1.7.0/trendseries/R/utils.R | 241 ++- trendseries-1.7.0/trendseries/README.md | 237 ++- trendseries-1.7.0/trendseries/build/vignette.rds |binary trendseries-1.7.0/trendseries/data/coffee_arabica.rda |binary trendseries-1.7.0/trendseries/data/coffee_robusta.rda |binary trendseries-1.7.0/trendseries/data/metadata_series.rda |binary trendseries-1.7.0/trendseries/inst/doc/trendseries.R | 49 trendseries-1.7.0/trendseries/inst/doc/trendseries.Rmd | 185 +- trendseries-1.7.0/trendseries/inst/doc/trendseries.html | 213 +-- trendseries-1.7.0/trendseries/man/augment_rolling.Rd |only trendseries-1.7.0/trendseries/man/augment_trends.Rd | 51 trendseries-1.7.0/trendseries/man/coffee_arabica.Rd | 50 trendseries-1.7.0/trendseries/man/coffee_robusta.Rd | 47 trendseries-1.7.0/trendseries/man/decompose_series.Rd | 41 trendseries-1.7.0/trendseries/man/deseason_series.Rd | 13 trendseries-1.7.0/trendseries/man/detrend_series.Rd | 38 trendseries-1.7.0/trendseries/man/df_to_ts.Rd | 8 trendseries-1.7.0/trendseries/man/electric.Rd | 17 trendseries-1.7.0/trendseries/man/electricity.Rd | 20 trendseries-1.7.0/trendseries/man/extract_trends.Rd | 44 trendseries-1.7.0/trendseries/man/figures/logo.png |binary trendseries-1.7.0/trendseries/man/gdp_construction.Rd | 19 trendseries-1.7.0/trendseries/man/ibcbr.Rd | 23 trendseries-1.7.0/trendseries/man/index_series.Rd |only trendseries-1.7.0/trendseries/man/metadata_series.Rd | 4 trendseries-1.7.0/trendseries/man/oil_derivatives.Rd | 19 trendseries-1.7.0/trendseries/man/retail_autofuel.Rd | 41 trendseries-1.7.0/trendseries/man/retail_volume.Rd | 45 trendseries-1.7.0/trendseries/man/roll_series.Rd |only trendseries-1.7.0/trendseries/man/transit_london_avgs.Rd | 38 trendseries-1.7.0/trendseries/man/transit_london_monthly.Rd | 34 trendseries-1.7.0/trendseries/man/ts_to_df.Rd | 8 trendseries-1.7.0/trendseries/man/utils.Rd | 2 trendseries-1.7.0/trendseries/man/vehicles.Rd | 19 trendseries-1.7.0/trendseries/tests/testthat/_snaps |only trendseries-1.7.0/trendseries/tests/testthat/test-augment_rolling.R |only trendseries-1.7.0/trendseries/tests/testthat/test-augment_trends.R | 401 +++++- trendseries-1.7.0/trendseries/tests/testthat/test-decompose_series.R | 519 +++++-- trendseries-1.7.0/trendseries/tests/testthat/test-deseason_series.R | 76 - trendseries-1.7.0/trendseries/tests/testthat/test-detrend_series.R | 70 - trendseries-1.7.0/trendseries/tests/testthat/test-df_to_ts.R | 117 + trendseries-1.7.0/trendseries/tests/testthat/test-edge-cases.R | 595 ++++++++- trendseries-1.7.0/trendseries/tests/testthat/test-extract_trends.R | 143 ++ trendseries-1.7.0/trendseries/tests/testthat/test-filters-econometric.R | 273 +++- trendseries-1.7.0/trendseries/tests/testthat/test-filters-ma.R | 166 ++ trendseries-1.7.0/trendseries/tests/testthat/test-index_series.R |only trendseries-1.7.0/trendseries/tests/testthat/test-method_registry.R | 71 + trendseries-1.7.0/trendseries/tests/testthat/test-params-stl.R | 36 trendseries-1.7.0/trendseries/tests/testthat/test-roll_series.R |only trendseries-1.7.0/trendseries/tests/testthat/test-tsibble.R |only trendseries-1.7.0/trendseries/tests/testthat/test-utils.R | 188 ++ trendseries-1.7.0/trendseries/vignettes/trendseries.Rmd | 185 +- 98 files changed, 5545 insertions(+), 2130 deletions(-)
Title: 'Rcpp' Bindings to 'FastAD' Auto-Differentiation
Description: The header-only 'C++' template library 'FastAD' for automatic
differentiation <https://github.com/JamesYang007/FastAD> is provided by
this package, along with a few illustrative examples that can all be called
from R.
Author: Dirk Eddelbuettel [aut, cre] ,
James Yang [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppFastAD versions 0.0.5 dated 2026-09-24 and 0.0.6 dated 2026-10-01
ChangeLog | 17 ++++++++++++ DESCRIPTION | 8 +++--- MD5 | 18 ++++++------- README.md | 8 +++--- build/partial.rdb |binary inst/NEWS.Rd | 14 ++++++++++ inst/include/fastad_bits/reverse/core/value_view.hpp | 25 +++++++++++++++++-- src/Makevars.in | 2 - src/Makevars.win.in | 2 - tools/configure.R | 2 - 10 files changed, 75 insertions(+), 21 deletions(-)
Title: Drawing Chinese National and Historical Flags with 'ggplot2'
Description: Provides programmatic implementations for drawing
Chinese national and historical flags using analytic geometry and
'ggplot2'-based vector graphics. Flag designs are constructed
entirely from geometric primitives such as polygons and rectangles,
without relying on external image files. The package is intended
for educational demonstration, reproducible visualization, and
procedural graphics in R.
Author: Zhaoshuo Liu [aut, cre]
Maintainer: Zhaoshuo Liu <liuzhaoshuo1997@outlook.com>
Diff between ggChinaFlag versions 0.4.0 dated 2026-09-14 and 1.0.0 dated 2026-10-01
DESCRIPTION | 6 MD5 | 28 - NAMESPACE | 1 NEWS.md | 15 R/flag_interface.R | 10 R/globals.R | 16 R/package_logo.R | 1043 +++++-------------------------------------- R/plot_military.R | 71 ++ man/figures |only man/plot_Han18Star.Rd | 37 - man/plot_P.R.CHINA_flag.Rd | 30 - man/plot_PLA.Rd | 1 man/plot_ROC_Beiyang_flag.Rd | 30 - man/plot_ROC_KMT_flag.Rd | 31 - man/plot_ggChinaFlag_logo.Rd |only 15 files changed, 259 insertions(+), 1060 deletions(-)
Title: Estimate Survival from Common Data Model Cohorts
Description: Estimate survival using data mapped to the Observational Medical Outcomes Partnership common data model. Survival can be estimated based on user-defined study cohorts.
Author: Kim Lopez-Gueell [aut, cre] ,
Edward Burn [aut] ,
Marti Catala [aut] ,
Xintong Li [aut] ,
Danielle Newby [aut] ,
Nuria Mercade-Besora [aut]
Maintainer: Kim Lopez-Gueell <kim.lopez@spc.ox.ac.uk>
Diff between CohortSurvival versions 1.1.2 dated 2026-07-03 and 1.2.0 dated 2026-10-01
DESCRIPTION | 16 MD5 | 60 NAMESPACE | 1 NEWS.md | 21 R/addCohortSurvival.R | 139 +- R/estimateSurvival.R | 212 ++- R/filterSurvivalChanges.R |only R/tableSurvival.R | 32 build/vignette.rds |binary inst/doc/a00_Creating_cohorts_for_survival.html | 381 ++--- inst/doc/a01_Single_event_of_interest.Rmd | 8 inst/doc/a01_Single_event_of_interest.html | 1477 +++++++++++------------ inst/doc/a02_Competing_risk_survival.Rmd | 25 inst/doc/a02_Competing_risk_survival.html | 312 ++-- inst/doc/a03_Further_survival_analyses.html | 94 - man/CohortSurvival-package.Rd | 1 man/addCohortSurvival.Rd | 28 man/estimateCompetingRiskSurvival.Rd | 38 man/estimateSingleEventSurvival.Rd | 25 man/filterSurvivalChanges.Rd |only man/reexports.Rd | 2 man/riskTable.Rd | 2 man/tableSurvival.Rd | 2 man/tableSurvivalAttrition.Rd | 2 man/tableSurvivalEvents.Rd | 2 tests/testthat/test-addCohortSurvival-multiple.R |only tests/testthat/test-addCohortSurvival.R | 42 tests/testthat/test-estimateSurvival.R | 83 + tests/testthat/test-filterSurvivalChanges.R |only tests/testthat/test-outcomeHierarchy.R |only tests/testthat/test-selectResults.R |only tests/testthat/test-tableSurvival.R | 16 vignettes/a01_Single_event_of_interest.Rmd | 8 vignettes/a02_Competing_risk_survival.Rmd | 25 34 files changed, 1800 insertions(+), 1254 deletions(-)
More information about CohortSurvival at CRAN
Permanent link
Title: Secure and Intuitive Access to 'BigDataPE' 'API' Datasets
Description: Designed to simplify the process of retrieving datasets from the 'Big Data PE' platform using secure token-based authentication. It provides functions for securely storing, retrieving, and managing tokens associated with specific datasets, as well as fetching and processing data. The data-retrieval engine is provided by the generic 'apifetch' package, which 'BigDataPE' configures for the Big Data PE service.
Author: Andre Leite [aut, cre] ,
Hugo Vasconcelos [aut] ,
Diogo Bezerra [aut] ,
Marcos Wasiliew [aut] ,
Carlos Amorim [aut] ,
Julia Nascimento Barreto [aut]
Maintainer: Andre Leite <leite@castlab.org>
Diff between BigDataPE versions 0.2.0 dated 2026-07-15 and 0.3.0 dated 2026-10-01
DESCRIPTION | 49 +++++++++++++++++++++++++++++------------------ MD5 | 20 ++++++++++--------- NEWS.md | 29 +++++++++++++++++++++++++++ R/BigDataPE.R | 45 ++++++++++++++++++++++++++++++------------- README.md | 35 ++++++++++++++++++++++----------- man/bdpe_fetch_chunks.Rd | 11 ++++++---- man/bdpe_fetch_data.Rd | 3 +- man/bdpe_get_token.Rd | 2 - man/bdpe_store_token.Rd | 12 +++++++++-- man/parse_queries.Rd | 7 ++++-- tests |only 11 files changed, 151 insertions(+), 62 deletions(-)
Title: Methods to Analyse Signed Networks
Description: Methods for the analysis of signed networks. This includes
several measures for structural balance as introduced by Cartwright
and Harary (1956) <doi:10.1037/h0046049>, blockmodeling algorithms
from Doreian (2008) <doi:10.1016/j.socnet.2008.03.005>, various
centrality indices, and projections of signed two-mode networks
introduced by Schoch (2020) <doi:10.1080/0022250X.2019.1711376>.
Author: David Schoch [aut, cre]
Maintainer: David Schoch <david@schochastics.net>
Diff between signnet versions 1.0.6 dated 2025-11-06 and 1.1.0 dated 2026-10-01
signnet-1.0.6/signnet/src/circArc.cpp |only signnet-1.0.6/signnet/src/optimBlocks.cpp |only signnet-1.0.6/signnet/src/optimBlocksGen.cpp |only signnet-1.1.0/signnet/DESCRIPTION | 10 signnet-1.1.0/signnet/MD5 | 103 signnet-1.1.0/signnet/NEWS.md | 36 signnet-1.1.0/signnet/R/RcppExports.R | 44 signnet-1.1.0/signnet/R/balance_scores.R | 56 signnet-1.1.0/signnet/R/blockmodel.R | 139 signnet-1.1.0/signnet/R/centrality_indices.R | 68 signnet-1.1.0/signnet/R/complex_matrices.R | 132 signnet-1.1.0/signnet/R/laplace_matrix.R | 18 signnet-1.1.0/signnet/R/plot.R | 35 signnet-1.1.0/signnet/R/random_graphs.R | 74 signnet-1.1.0/signnet/R/signed_triangles.R | 1788 ---------- signnet-1.1.0/signnet/R/sysdata.rda |only signnet-1.1.0/signnet/R/utils.R | 82 signnet-1.1.0/signnet/README.md | 19 signnet-1.1.0/signnet/build/vignette.rds |binary signnet-1.1.0/signnet/inst/doc/blockmodeling.R | 6 signnet-1.1.0/signnet/inst/doc/blockmodeling.Rmd | 6 signnet-1.1.0/signnet/inst/doc/blockmodeling.html | 20 signnet-1.1.0/signnet/inst/doc/centrality.html | 3 signnet-1.1.0/signnet/inst/doc/complex_matrices.R | 4 signnet-1.1.0/signnet/inst/doc/complex_matrices.Rmd | 4 signnet-1.1.0/signnet/inst/doc/signed_2mode.html | 28 signnet-1.1.0/signnet/inst/doc/signed_networks.html | 14 signnet-1.1.0/signnet/inst/doc/structural_balance.html | 16 signnet-1.1.0/signnet/man/balance_score.Rd | 2 signnet-1.1.0/signnet/man/complex_walks.Rd | 2 signnet-1.1.0/signnet/man/count_complex_triangles.Rd | 2 signnet-1.1.0/signnet/man/eigen_centrality_signed.Rd | 1 signnet-1.1.0/signnet/man/figures/README-block_example-1.png |binary signnet-1.1.0/signnet/man/frustration_exact.Rd | 6 signnet-1.1.0/signnet/man/ggblock.Rd | 4 signnet-1.1.0/signnet/man/ggsigned.Rd | 8 signnet-1.1.0/signnet/man/signed_blockmodel.Rd | 7 signnet-1.1.0/signnet/man/signed_blockmodel_general.Rd | 12 signnet-1.1.0/signnet/man/triad_census_signed.Rd | 2 signnet-1.1.0/signnet/src/Makevars |only signnet-1.1.0/signnet/src/Makevars.win |only signnet-1.1.0/signnet/src/RcppExports.cpp | 157 signnet-1.1.0/signnet/src/blockmodel.cpp |only signnet-1.1.0/signnet/src/complex_walks.cpp | 31 signnet-1.1.0/signnet/src/triadCensus.cpp | 28 signnet-1.1.0/signnet/tests/testthat/test-balance_scores.R | 16 signnet-1.1.0/signnet/tests/testthat/test-blockmodel.R | 69 signnet-1.1.0/signnet/tests/testthat/test-centrality_indices.R | 8 signnet-1.1.0/signnet/tests/testthat/test-complex_matrices.R | 52 signnet-1.1.0/signnet/tests/testthat/test-laplace_matrix.R | 24 signnet-1.1.0/signnet/tests/testthat/test-plot.R | 16 signnet-1.1.0/signnet/tests/testthat/test-random_graphs.R | 9 signnet-1.1.0/signnet/tests/testthat/test-signed_triangles.R | 12 signnet-1.1.0/signnet/tests/testthat/test-utils.R | 31 signnet-1.1.0/signnet/vignettes/blockmodeling.Rmd | 6 signnet-1.1.0/signnet/vignettes/complex_matrices.Rmd | 4 56 files changed, 838 insertions(+), 2376 deletions(-)
Title: Get XKCD Comic from R
Description: Visualize your favorite XKCD comic strip directly from R.
Includes full-text search with BM25 ranking and semantic similarity search
via latent semantic analysis, powered by a local 'DuckDB' cache.
Author: Paolo Sonego [aut, cph, cre],
Mikko Korpela [aut]
Maintainer: Paolo Sonego <paolo.sonego@gmail.com>
Diff between RXKCD versions 2.0.1 dated 2026-04-15 and 2.0.2 dated 2026-10-01
DESCRIPTION | 14 ++++++------- MD5 | 12 ++++++----- NAMESPACE | 6 +++-- NEWS.md |only R/embeddings.R |only R/getXKCD.R | 57 ++++++++++++++--------------------------------------- README.md | 10 ++++----- man/similarXKCD.Rd | 6 ++--- 8 files changed, 42 insertions(+), 63 deletions(-)
Title: Sleep Data Filtering and Visualisation
Description: An online app and command-line utility to import, filter and visualise sleep data. Can be used with sleep data collected from any type of device (e.g. radar, sleep diary,...) as long as the data contains sleep onset and wake-up times for each sleep session.
Author: Daniel Thedie [aut, cre, cph]
Maintainer: Daniel Thedie <daniel.thedie@ed.ac.uk>
Diff between nocturn versions 1.2.0 dated 2026-07-29 and 1.2.1 dated 2026-10-01
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NAMESPACE | 8 ++++++++ NEWS.md | 6 ++++++ R/colnames_key.R | 8 ++++++++ README.md | 2 +- man/plot_bland_altman.Rd | 21 ++++++++++++++++++++- 7 files changed, 52 insertions(+), 11 deletions(-)
Title: Geometric Data Analysis
Description: Many tools for Geometric Data Analysis (Le Roux & Rouanet (2005) <doi:10.1007/1-4020-2236-0>), such as MCA variants (Specific Multiple Correspondence Analysis, Class Specific Analysis), many graphical and statistical aids to interpretation (structuring factors, concentration ellipses, inductive tests, bootstrap validation, etc.) and multiple-table analysis (Multiple Factor Analysis, between- and inter-class analysis, Principal Component Analysis and Correspondence Analysis with Instrumental Variables, etc.).
Author: Nicolas Robette [aut, cre]
Maintainer: Nicolas Robette <nicolas.robette@uvsq.fr>
Diff between GDAtools versions 2.3 dated 2025-05-29 and 2.3.1 dated 2026-10-01
DESCRIPTION | 8 ++-- MD5 | 26 ++++++------- NEWS.md | 10 ++++- R/angles.csa.R | 82 +++++++++++++++++++++++++++++++++++-------- R/ggbootvalid_supvars.R | 5 ++ R/ggbootvalid_variables.R | 5 ++ R/ggcloud_indiv.R | 5 ++ R/ggcloud_variables.R | 4 +- README.md | 12 +++--- man/angles.csa.Rd | 15 +++---- man/ggbootvalid_supvars.Rd | 4 +- man/ggbootvalid_variables.Rd | 3 + man/ggcloud_indiv.Rd | 4 +- man/ggcloud_variables.Rd | 3 + 14 files changed, 131 insertions(+), 55 deletions(-)
Title: Projection Pursuit Oblique Decision Trees and Random Forests
Description: Builds decision trees by splitting on linear combinations of
randomly chosen variables. Projection pursuit is used to choose a
projection of the variables that best separates the groups. Using linear
combinations of variables to separate groups takes the correlation between
variables into account, which allows the model to outperform a traditional
decision tree when the separation between groups occurs in combinations of
variables. Single trees can be assembled into random forests for improved
accuracy. Implements projection pursuit classification trees (Lee, Cook,
Park and Lee (2013) <doi:10.1214/13-EJS810>) and projection
pursuit forests (da Silva, Cook and Lee (2021)
<doi:10.1080/10618600.2020.1870480>), following the earlier 'PPforest'
package.
Author: Andres Vidal [aut, cre, cph],
Natalia da Silva [aut]
Maintainer: Andres Vidal <andres@andresvidal.dev>
Diff between ppforest2 versions 0.1.2 dated 2026-07-21 and 0.1.3 dated 2026-10-01
DESCRIPTION | 17 - MD5 | 67 ++-- NEWS.md | 87 +++--- R/plot-design.R | 12 R/plot-structure.R | 14 R/pprf.R | 2 R/pptr.R | 1 R/util.R | 57 +++- README.md | 15 - configure | 21 - configure.win | 13 inst/WORDLIST | 3 inst/doc/introduction.html | 142 ++++------ man/figures |only src/Makevars.in | 2 src/core/src/models/Bagged.hpp | 2 src/core/src/models/ClassificationForest.cpp | 2 src/core/src/models/Evaluation.cpp | 10 src/core/src/models/RegressionForest.cpp | 4 src/core/src/models/TrainingSpec.hpp | 5 src/core/src/models/strategies/cutpoint/MeanOfMeans.cpp | 4 src/core/src/models/strategies/grouping/ByCutpoint.cpp | 2 src/core/src/models/strategies/pp/PDA.cpp | 2 src/core/src/stats/GroupPartition.cpp | 14 src/core/src/stats/GroupPartition.hpp | 7 src/core/src/stats/Stats.hpp | 4 src/main.cpp | 11 tests/testthat/_snaps/plot-structure/pprf-structure.svg | 4 tests/testthat/_snaps/plot-structure/pptr-regression-structure.svg | 10 tests/testthat/_snaps/plot-structure/pptr-structure.svg | 4 tests/testthat/test-parsnip.R | 2 tests/testthat/test-pprf.R | 80 +++++ tests/testthat/test-pptr.R | 55 +++ tests/testthat/test-reproducibility.R | 37 ++ tests/testthat/test-variable-importance.R | 2 35 files changed, 458 insertions(+), 256 deletions(-)
Title: Official 'GenderAPI.io' V2 Client
Description: Official 'GenderAPI.io' V2 client for R. Provides an interface to
the 'GenderAPI.io' V2 web service <https://www.genderapi.io/api-documentation>
that infers gender from personal names, email addresses and usernames, runs
batches of up to 50 items, reads credit usage and validates phone numbers.
Responses are returned as parsed lists with all fields kept, including
unknown results, confidence metadata, billing status and batch summaries;
errors are raised as structured conditions. Requests are never retried and
redirects are never followed. Results are inferences, not verified identity,
and can be unknown.
Author: Onur Ozturk [aut, cre]
Maintainer: Onur Ozturk <onurozturk1980@gmail.com>
Diff between genderapi versions 1.0.3 dated 2025-07-14 and 2.0.0 dated 2026-10-01
genderapi-1.0.3/genderapi/R/genderapi.R |only genderapi-1.0.3/genderapi/README.md |only genderapi-1.0.3/genderapi/man/get_gender_by_email.Rd |only genderapi-1.0.3/genderapi/man/get_gender_by_email_bulk.Rd |only genderapi-1.0.3/genderapi/man/get_gender_by_name.Rd |only genderapi-1.0.3/genderapi/man/get_gender_by_name_bulk.Rd |only genderapi-1.0.3/genderapi/man/get_gender_by_username.Rd |only genderapi-1.0.3/genderapi/man/get_gender_by_username_bulk.Rd |only genderapi-1.0.3/genderapi/tests/testthat/test-get_gender_by_email.R |only genderapi-1.0.3/genderapi/tests/testthat/test-get_gender_by_email_bulk.R |only genderapi-1.0.3/genderapi/tests/testthat/test-get_gender_by_name.R |only genderapi-1.0.3/genderapi/tests/testthat/test-get_gender_by_name_bulk.R |only genderapi-1.0.3/genderapi/tests/testthat/test-get_gender_by_username.R |only genderapi-1.0.3/genderapi/tests/testthat/test-get_gender_by_username_bulk.R |only genderapi-2.0.0/genderapi/DESCRIPTION | 30 +++-- genderapi-2.0.0/genderapi/MD5 | 57 +++++++--- genderapi-2.0.0/genderapi/NAMESPACE | 26 ++++ genderapi-2.0.0/genderapi/R/account.R |only genderapi-2.0.0/genderapi/R/client.R |only genderapi-2.0.0/genderapi/R/defunct.R |only genderapi-2.0.0/genderapi/R/errors.R |only genderapi-2.0.0/genderapi/R/gender.R |only genderapi-2.0.0/genderapi/R/genderapi-package.R |only genderapi-2.0.0/genderapi/R/response.R |only genderapi-2.0.0/genderapi/man/as.data.frame.genderapi.Rd |only genderapi-2.0.0/genderapi/man/genderapi-defunct.Rd |only genderapi-2.0.0/genderapi/man/genderapi-package.Rd |only genderapi-2.0.0/genderapi/man/genderapi_batch.Rd |only genderapi-2.0.0/genderapi/man/genderapi_capabilities.Rd |only genderapi-2.0.0/genderapi/man/genderapi_client.Rd |only genderapi-2.0.0/genderapi/man/genderapi_error.Rd |only genderapi-2.0.0/genderapi/man/genderapi_failed.Rd |only genderapi-2.0.0/genderapi/man/genderapi_gender.Rd |only genderapi-2.0.0/genderapi/man/genderapi_item.Rd |only genderapi-2.0.0/genderapi/man/genderapi_usage.Rd |only genderapi-2.0.0/genderapi/man/genderapi_validate_phone.Rd |only genderapi-2.0.0/genderapi/tests/testthat/fixtures |only genderapi-2.0.0/genderapi/tests/testthat/helper-server.R |only genderapi-2.0.0/genderapi/tests/testthat/test-access-mode.R |only genderapi-2.0.0/genderapi/tests/testthat/test-account.R |only genderapi-2.0.0/genderapi/tests/testthat/test-batch.R |only genderapi-2.0.0/genderapi/tests/testthat/test-client.R |only genderapi-2.0.0/genderapi/tests/testthat/test-defunct.R |only genderapi-2.0.0/genderapi/tests/testthat/test-errors.R |only genderapi-2.0.0/genderapi/tests/testthat/test-gender.R |only genderapi-2.0.0/genderapi/tests/testthat/test-transport.R |only genderapi-2.0.0/genderapi/tests/testthat/test-validation.R |only 47 files changed, 84 insertions(+), 29 deletions(-)
Title: Tools for the Analysis of Epidemiological Data
Description: Tools for the analysis of epidemiological and surveillance data. Contains functions for directly and indirectly adjusting measures of disease frequency, quantifying measures of association on the basis of single or multiple strata of count data presented in a contingency table, computation of confidence intervals around incidence risk and incidence rate estimates and sample size calculations for cross-sectional, case-control and cohort studies. Surveillance tools include functions to calculate an appropriate sample size for 1- and 2-stage representative freedom surveys, functions to estimate surveillance system sensitivity and functions to support scenario tree modelling analyses.
Author: Mark Stevenson [aut, cre] ,
Evan Sergeant [aut],
Cord Heuer [ctb],
Ian Kopacka [ctb],
Klemens Fuchs [ctb],
Telmo Nunes [ctb],
Cord Heuer [ctb],
Jonathon Marshall [ctb],
Javier Sanchez [ctb],
Ron Thornton [ctb],
Jeno Reiczigel [ctb],
Jim Robison-Cox [ [...truncated...]
Maintainer: Mark Stevenson <mark.stevenson1@unimelb.edu.au>
Diff between epiR versions 2.0.98 dated 2026-09-19 and 2.0.99 dated 2026-10-01
DESCRIPTION | 8 +++--- MD5 | 28 ++++++++++++--------- NAMESPACE | 15 ++++++----- NEWS | 7 +++++ R/epi.iref.R |only R/zbrenner.R |only R/zgart_buck.R |only R/zhabibzadeh.R |only R/zstaquet.R |only inst/doc/epiR_descriptive_epi.html | 18 ++++++------- inst/doc/epiR_diagnostic_tests.html | 20 +++++++-------- inst/doc/epiR_measures_of_assoc.html | 12 ++++----- inst/doc/epiR_sample_size.html | 4 +-- inst/doc/epiR_surveillance.html | 14 +++++----- man/epi.2by2.Rd | 46 +++++++++++++++++------------------ man/epi.about.Rd | 2 + man/epi.iref.Rd |only man/epi.tests.Rd | 21 +++++++-------- 18 files changed, 105 insertions(+), 90 deletions(-)
Title: Data Science Infrastructure for Global Health
Description: Supports global health data analysis, including a
publication-ready 'ggplot2' theme, a 'flextable' defaults helper,
a thin pie chart wrapper, built-in regional country-code datasets
with a WHO region lookup helper, a geometric mean function for
indicator aggregation, an average annual rate of reduction function
for indicator progress tracking, direct age standardization against
the bundled WHO World Standard Population, period life-table
construction, a snapshot helper for reproducible data pulls, and
convenience clients for the World Health Organization Global Health
Observatory (GHO) OData API <https://ghoapi.azureedge.net/api/> and
the United Nations Sustainable Development Goals (SDG) API
<https://unstats.un.org/SDGAPI/swagger/>.
Author: Shanlong Ding [aut, cre]
Maintainer: Shanlong Ding <dings@who.int>
Diff between DSIR versions 0.9.0 dated 2026-08-28 and 0.10.0 dated 2026-10-01
DESCRIPTION | 8 MD5 | 51 +++-- NAMESPACE | 13 - NEWS.md | 61 +++++- R/DSIR-package.R | 6 R/bind_indicators.R | 22 +- R/clean_metadata.R |only R/gho.R | 56 ++++- R/sdg.R | 158 +++++++++------ R/sdg_coverage.R | 25 +- R/sdg_dimensions.R |only R/sdg_metadata.R |only R/sdg_pagination.R |only README.md | 129 +++++++++++- inst/CITATION | 2 inst/doc/DSIR.R | 31 +++ inst/doc/DSIR.Rmd | 121 +++++++++++- inst/doc/DSIR.html | 349 ++++++++++++++++++++++++++--------- inst/doc/visualizing-indicators.html | 4 man/DSIR-package.Rd | 6 man/bind_indicators.Rd | 14 + man/gho_clean.Rd | 25 ++ man/sdg_clean.Rd | 39 +++ man/sdg_coverage.Rd | 17 + man/sdg_data.Rd | 31 ++- man/sdg_dimensions.Rd |only tests/testthat/test-clean-metadata.R |only tests/testthat/test-sdg-dimensions.R |only tests/testthat/test-sdg-metadata.R |only tests/testthat/test-sdg-pagination.R |only vignettes/DSIR.Rmd | 121 +++++++++++- 31 files changed, 1019 insertions(+), 270 deletions(-)
Title: Panel Fixed Effects Filtered and Variance Decomposition
Estimation
Description: Implements fixed effects estimators for time-invariant variables
in panel data models. Provides three estimation methods: FEVD (Fixed Effects
Vector Decomposition) from Plumper and Troeger (2007)
<doi:10.1093/pan/mpm002>, and FEF (Fixed Effects Filtered) and FEF-IV
(instrumental variables variant) from Pesaran and Zhou (2018)
<doi:10.1080/07474938.2016.1222225>. All methods use the Pesaran and Zhou
variance estimators, which account for generated regressor uncertainty,
and report the full covariance matrix of the time-varying,
time-invariant and intercept coefficients.
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between xtfifevd versions 1.0.2 dated 2026-04-28 and 1.1.0 dated 2026-10-01
DESCRIPTION | 18 MD5 | 37 - NAMESPACE | 57 - NEWS.md | 120 ++- R/diagnostics.R | 301 ++++---- R/estimation.R | 1263 +++++++++++++++++++------------------ R/methods.R | 312 ++++----- R/xtfifevd-package.R | 115 +-- R/xtfifevd.R | 407 +++++++---- README.md | 337 +++++---- build/partial.rdb |binary inst/CITATION | 2 man/bw_ratio.Rd | 145 ++-- man/estimation-internal.Rd | 18 man/xtfifevd-methods.Rd | 18 man/xtfifevd-package.Rd | 141 ++-- man/xtfifevd.Rd | 425 ++++++++---- tests/testthat.R | 12 tests/testthat/test-pesaran-zhou.R |only tests/testthat/test-xtfifevd.R | 470 ++++++------- 20 files changed, 2343 insertions(+), 1855 deletions(-)
Title: Durbin-Hausman Panel Cointegration Tests
Description: Implements the Durbin-Hausman panel cointegration tests of
Westerlund (2008) <doi:10.1002/jae.967>. The tests are robust to
cross-sectional dependence through common factor extraction using
principal components. Provides both group-mean (DHg) and panel (DHp)
test statistics with automatic factor number selection via information
criteria.
Author: Muhammad Alkhalaf [aut, cre, cph] ,
Joakim Westerlund [ctb]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between xtdhcoint versions 1.0.1 dated 2026-03-12 and 1.0.3 dated 2026-10-01
DESCRIPTION | 18 +++++++----------- MD5 | 17 +++++++++-------- NEWS.md | 9 +++++++++ R/xtdhcoint-package.R | 2 +- R/xtdhcoint.R | 2 +- README.md | 2 +- build/partial.rdb |binary inst |only man/xtdhcoint-package.Rd | 5 ++--- man/xtdhcoint.Rd | 2 +- 10 files changed, 31 insertions(+), 26 deletions(-)
Title: Cross-Sectionally Augmented Panel Quantile ARDL
Description: Implements the Cross-Sectionally Augmented Panel Quantile
Autoregressive Distributed Lag (CS-PQARDL) model and the Quantile
Common Correlated Effects Mean Group (QCCEMG) estimator for panel data
with cross-sectional dependence. The package handles unobserved common
factors through cross-sectional averages following Pesaran (2006)
<doi:10.1111/j.1468-0262.2006.00692.x> and Chudik and Pesaran (2015)
<doi:10.1016/j.jeconom.2015.03.007>. Quantile regression for dynamic
panels follows Harding, Lamarche, and Pesaran (2020)
<doi:10.1002/jae.2753>. The ARDL approach to cointegration
testing is based on Pesaran, Shin, and Smith (2001)
<doi:10.1002/jae.616>.
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between xtcspqardl versions 1.0.2 dated 2026-03-12 and 1.0.5 dated 2026-10-01
DESCRIPTION | 24 ++++++-------- MD5 | 21 ++++++------- NEWS.md | 17 ++++++++++ R/estimate.R | 74 +++++++++++++++++++++++++++++----------------- R/xtcspqardl-package.R | 6 +-- R/xtcspqardl.R | 4 +- README.md | 4 -- build/partial.rdb |binary inst |only man/estimate_qccemg.Rd | 6 +-- man/xtcspqardl-package.Rd | 10 +----- man/xtcspqardl.Rd | 4 +- 12 files changed, 100 insertions(+), 70 deletions(-)
Title: Bootstrap Slope Heterogeneity Test for Panel Data
Description: Implements the bootstrap slope heterogeneity test for panel data
of Blomquist and Westerlund (2016) <doi:10.1007/s00181-015-0978-z>.
Tests the null hypothesis that slope coefficients are homogeneous across
cross-sectional units using a block bootstrap of the Swamy-type statistic,
with the unit-specific variance estimator of the paper or that of Pesaran
and Yamagata (2008) <doi:10.1016/j.jeconom.2007.05.010>, whose Delta and
adjusted Delta statistics are reported with asymptotic p-values. Supports
partialling out of control variables and cross-sectional averages.
Author: Muhammad Alkhalaf [aut, cre, cph] ,
Tore Bersvendsen [ctb]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between xtbhst versions 1.0.2 dated 2026-04-27 and 1.1.0 dated 2026-10-01
DESCRIPTION | 21 MD5 | 34 - NAMESPACE | 38 - NEWS.md | 96 ++- R/imports.R | 10 R/methods.R | 527 +++++++++-------- R/xtbhst-package.R | 122 ++-- R/xtbhst.R | 1273 ++++++++++++++++++++++++------------------- README.md | 252 ++++---- build/partial.rdb |binary inst/CITATION | 2 man/plot.xtbhst.Rd | 58 + man/print.xtbhst.Rd | 42 - man/summary.xtbhst.Rd | 42 - man/xtbhst-package.Rd | 185 +++--- man/xtbhst.Rd | 349 +++++++---- tests/testthat.R | 24 tests/testthat/test-xtbhst.R | 522 +++++++++++------ 18 files changed, 2055 insertions(+), 1542 deletions(-)
Title: Universal Turning Point and Inflection Point Tests
Description: Performs turning point and inflection point tests for
U-shaped and inverse U-shaped relationships in regression models.
Implements the Sasabuchi (1980) test as extended by Lind and Mehlum (2010)
with support for quadratic, cubic, log-quadratic, and inverse functional
forms. Features include delta-method standard errors, Fieller confidence
intervals, Simonsohn (2018) two-lines test, and parametric bootstrap.
Designed for post-estimation analysis of linear models, panel models,
and quantile regression.
References: Lind and Mehlum (2010) <doi:10.1111/j.1468-0084.2009.00569.x>;
Sasabuchi (1980); Fieller (1954) <doi:10.1111/j.2517-6161.1954.tb00159.x>.
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between tptest versions 1.0.3 dated 2026-04-09 and 1.1.0 dated 2026-10-01
DESCRIPTION | 8 MD5 | 32 NAMESPACE | 20 NEWS.md | 168 +++- R/data.R | 84 +- R/tptest-methods.R | 654 +++++++++--------- R/tptest.R | 1812 +++++++++++++++++++++++++++++--------------------- R/zzz.R | 14 README.md | 230 +++--- build/partial.rdb |binary inst |only man/ekc.Rd | 113 +-- man/fieller_ci.Rd | 120 ++- man/tptest-methods.Rd | 127 +-- man/tptest.Rd | 368 ++++++---- man/twolines_test.Rd | 68 - tests |only 17 files changed, 2211 insertions(+), 1607 deletions(-)
Title: Interface to the 'SymEngine' Library
Description: Provides an R interface to 'SymEngine' <https://github.com/symengine/>,
a standalone 'C++' library for fast symbolic manipulation. The package has functionalities
for symbolic computation like calculating exact mathematical expressions, solving
systems of linear equations and code generation.
Author: Jialin Ma [cre, aut],
Isuru Fernando [aut],
Xin Chen [aut]
Maintainer: Jialin Ma <jialin.ma@gmx.com>
Diff between symengine versions 0.2.13 dated 2026-06-11 and 0.2.14 dated 2026-10-01
DESCRIPTION | 10 +++++----- MD5 | 4 ++-- src/upstream.tar |binary 3 files changed, 7 insertions(+), 7 deletions(-)
Title: Transmission Channel Analysis in Structural VAR Models
Description: Implements Transmission Channel Analysis (TCA) for structural
vector autoregressive (SVAR) models following the methodology of
Wegner, Lieb, Smeekes and Wilms (2025) <doi:10.48550/arXiv.2405.18987>.
TCA decomposes impulse response functions (IRFs) into contributions
from distinct transmission channels using a systems form representation
and directed acyclic graph (DAG) path analysis. Supports overlapping channels,
exhaustive 3-way and 4-way decompositions via inclusion-exclusion
principle. This is a parallel R implementation of the
'tca-matlab-toolbox' (<https://github.com/enweg/tca-matlab-toolbox>).
Author: Muhammad Alkhalaf [aut, cre] ,
Enrico Wegner [ctb] ,
Lenard Lieb [ctb] ,
Stephan Smeekes [ctb] ,
Ines Wilms [ctb]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between SVARtca versions 1.0.2 dated 2026-04-08 and 1.0.3 dated 2026-10-01
DESCRIPTION | 34 +- LICENSE | 4 MD5 | 47 +-- NAMESPACE | 52 +-- NEWS.md | 76 ++++- R/plot_tca.R | 252 ++++++++--------- R/systems_form.R | 409 +++++++++++++++------------- R/tca_analyze.R | 584 +++++++++++++++++++++++----------------- R/tca_from_var.R | 178 ++++++------ R/transmission.R | 361 ++++++++++++++----------- build |only inst/CITATION | 27 - inst/doc/tca-introduction.R | 135 +++++++-- inst/doc/tca-introduction.Rmd | 329 +++++++++++----------- inst/doc/tca-introduction.html | 590 ++++++++++++++++++++++++++++++++++++++++- man/SVARtca-package.Rd | 160 +++++------ man/plot_tca.Rd | 84 ++--- man/print.tca_result.Rd | 42 +- man/tca_analyze.Rd | 159 +++++------ man/tca_decompose_binary.Rd | 64 ++-- man/tca_from_var.Rd | 92 +++--- man/tca_systems_form.Rd | 105 ++++--- man/tca_validate_additivity.Rd | 120 ++++++-- tests/testthat.R | 14 tests/testthat/test-tca.R | 520 ++++++++++++++++++++++++------------ 25 files changed, 2797 insertions(+), 1641 deletions(-)
Title: Publication-Ready Tables for Descriptive Statistics and
Regression Models
Description: Provides publication-ready tables for descriptive statistics
and regression models: frequency tables and cross-tabulations with
association measures (Cramer's V, Kendall's Tau-b, and others),
categorical and continuous summary tables, by group or from a complex
survey design, and regression tables for one or more models side by
side, across more than thirty model classes from mixed-effects to
survival and Bayesian, with robust standard errors, average marginal
effects, and univariable screening. Tables follow APA conventions by
default, can switch to named journal styles such as JAMA, NEJM, or
The Lancet, and render identically in the console and in 'gt',
'tinytable', 'flextable', 'Word', 'Excel', or the clipboard. Declared
missing values in labelled data are honored and disclosed throughout
the descriptive tables. Helpers cover codebooks, variable inspection,
and row-wise summaries.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.12.0 dated 2026-05-19 and 0.13.0 dated 2026-10-01
spicy-0.12.0/spicy/inst/doc/association-measures.R |only spicy-0.12.0/spicy/inst/doc/association-measures.Rmd |only spicy-0.12.0/spicy/inst/doc/association-measures.html |only spicy-0.12.0/spicy/inst/doc/frequency-tables.R |only spicy-0.12.0/spicy/inst/doc/frequency-tables.Rmd |only spicy-0.12.0/spicy/inst/doc/frequency-tables.html |only spicy-0.12.0/spicy/inst/doc/summary-tables-reporting.R |only spicy-0.12.0/spicy/inst/doc/summary-tables-reporting.Rmd |only spicy-0.12.0/spicy/inst/doc/summary-tables-reporting.html |only spicy-0.12.0/spicy/inst/doc/table-categorical.R |only spicy-0.12.0/spicy/inst/doc/table-categorical.Rmd |only spicy-0.12.0/spicy/inst/doc/table-categorical.html |only spicy-0.12.0/spicy/inst/doc/table-continuous-lm.R |only spicy-0.12.0/spicy/inst/doc/table-continuous-lm.Rmd |only spicy-0.12.0/spicy/inst/doc/table-continuous-lm.html |only spicy-0.12.0/spicy/inst/doc/table-continuous.R |only spicy-0.12.0/spicy/inst/doc/table-continuous.Rmd |only spicy-0.12.0/spicy/inst/doc/table-continuous.html |only spicy-0.12.0/spicy/inst/doc/table-regression.R |only spicy-0.12.0/spicy/inst/doc/table-regression.Rmd |only spicy-0.12.0/spicy/inst/doc/table-regression.html |only spicy-0.12.0/spicy/inst/doc/variable-exploration.R |only spicy-0.12.0/spicy/inst/doc/variable-exploration.Rmd |only spicy-0.12.0/spicy/inst/doc/variable-exploration.html |only spicy-0.12.0/spicy/man/figures/animation_varlist.gif |only spicy-0.12.0/spicy/tests/testthat/test-regression_coverage_push.R |only spicy-0.12.0/spicy/tests/testthat/test-regression_titlefooter.R |only spicy-0.12.0/spicy/vignettes/_pkgdown-helpers.R |only spicy-0.12.0/spicy/vignettes/association-measures.Rmd |only spicy-0.12.0/spicy/vignettes/frequency-tables.Rmd |only spicy-0.12.0/spicy/vignettes/summary-tables-reporting.Rmd |only spicy-0.12.0/spicy/vignettes/table-categorical.Rmd |only spicy-0.12.0/spicy/vignettes/table-continuous-lm.Rmd |only spicy-0.12.0/spicy/vignettes/table-continuous.Rmd |only spicy-0.12.0/spicy/vignettes/table-regression.Rmd |only spicy-0.12.0/spicy/vignettes/variable-exploration.Rmd |only spicy-0.13.0/spicy/DESCRIPTION | 64 spicy-0.13.0/spicy/MD5 | 603 - spicy-0.13.0/spicy/NAMESPACE | 77 spicy-0.13.0/spicy/NEWS.md | 1391 +- spicy-0.13.0/spicy/R/abort.R | 398 spicy-0.13.0/spicy/R/assoc.R | 591 - spicy-0.13.0/spicy/R/clipboard_helpers.R |only spicy-0.13.0/spicy/R/code_book-filename.R | 3 spicy-0.13.0/spicy/R/code_book.R | 333 spicy-0.13.0/spicy/R/copy_clipboard.R | 463 spicy-0.13.0/spicy/R/count_n.R | 183 spicy-0.13.0/spicy/R/cross_tab.R | 720 + spicy-0.13.0/spicy/R/data.R | 2 spicy-0.13.0/spicy/R/excel_helpers.R |only spicy-0.13.0/spicy/R/flextable_helpers.R | 317 spicy-0.13.0/spicy/R/freq.R | 356 spicy-0.13.0/spicy/R/freq_print.R | 89 spicy-0.13.0/spicy/R/glm_compute.R | 1144 + spicy-0.13.0/spicy/R/i18n.R |only spicy-0.13.0/spicy/R/i18n_fr.R |only spicy-0.13.0/spicy/R/inline.R |only spicy-0.13.0/spicy/R/label_from_names.R | 377 spicy-0.13.0/spicy/R/lm_compute.R | 814 - spicy-0.13.0/spicy/R/lm_helpers.R | 40 spicy-0.13.0/spicy/R/mean_n.R | 24 spicy-0.13.0/spicy/R/regression_align.R | 625 - spicy-0.13.0/spicy/R/regression_ame.R | 2025 ++- spicy-0.13.0/spicy/R/regression_broom.R | 498 spicy-0.13.0/spicy/R/regression_dispatch.R | 5493 +++++---- spicy-0.13.0/spicy/R/regression_extract.R | 1868 ++- spicy-0.13.0/spicy/R/regression_frame.R |only spicy-0.13.0/spicy/R/regression_frame_MASS.R |only spicy-0.13.0/spicy/R/regression_frame_estimatr.R |only spicy-0.13.0/spicy/R/regression_frame_fixest.R |only spicy-0.13.0/spicy/R/regression_frame_flexsurv_selection.R |only spicy-0.13.0/spicy/R/regression_frame_geepack.R |only spicy-0.13.0/spicy/R/regression_frame_glmmTMB.R |only spicy-0.13.0/spicy/R/regression_frame_lm.R |only spicy-0.13.0/spicy/R/regression_frame_merMod.R |only spicy-0.13.0/spicy/R/regression_frame_mgcv.R |only spicy-0.13.0/spicy/R/regression_frame_mlogit_betareg.R |only spicy-0.13.0/spicy/R/regression_frame_multinom.R |only spicy-0.13.0/spicy/R/regression_frame_nlme.R |only spicy-0.13.0/spicy/R/regression_frame_nls.R |only spicy-0.13.0/spicy/R/regression_frame_ordinal.R |only spicy-0.13.0/spicy/R/regression_frame_pscl.R |only spicy-0.13.0/spicy/R/regression_frame_quantreg_AER.R |only spicy-0.13.0/spicy/R/regression_frame_rms.R |only spicy-0.13.0/spicy/R/regression_frame_stan.R |only spicy-0.13.0/spicy/R/regression_frame_survival.R |only spicy-0.13.0/spicy/R/regression_frame_svycoxph.R |only spicy-0.13.0/spicy/R/regression_frame_svyglm.R |only spicy-0.13.0/spicy/R/regression_frame_svyolr.R |only spicy-0.13.0/spicy/R/regression_multinom_layout.R |only spicy-0.13.0/spicy/R/regression_nested.R | 1775 ++- spicy-0.13.0/spicy/R/regression_partial.R | 322 spicy-0.13.0/spicy/R/regression_re_test.R |only spicy-0.13.0/spicy/R/regression_render.R | 1857 ++- spicy-0.13.0/spicy/R/regression_structured.R | 1710 ++ spicy-0.13.0/spicy/R/regression_survival_estimands.R |only spicy-0.13.0/spicy/R/regression_titlefooter.R | 3581 ++++-- spicy-0.13.0/spicy/R/regression_transform.R | 167 spicy-0.13.0/spicy/R/regression_uv.R |only spicy-0.13.0/spicy/R/regression_validate.R | 2375 +++- spicy-0.13.0/spicy/R/row_n_helpers.R | 477 spicy-0.13.0/spicy/R/selection_helpers.R | 314 spicy-0.13.0/spicy/R/smd.R |only spicy-0.13.0/spicy/R/spicy-package.R | 352 spicy-0.13.0/spicy/R/spicy_style.R |only spicy-0.13.0/spicy/R/standardize_glm.R | 359 spicy-0.13.0/spicy/R/standardize_lm.R | 1359 +- spicy-0.13.0/spicy/R/sum_n.R | 14 spicy-0.13.0/spicy/R/survey_helpers.R |only spicy-0.13.0/spicy/R/table_categorical.R | 2539 +++- spicy-0.13.0/spicy/R/table_categorical_print.R | 224 spicy-0.13.0/spicy/R/table_categorical_svy.R |only spicy-0.13.0/spicy/R/table_categorical_svy_print.R |only spicy-0.13.0/spicy/R/table_categorical_svy_render.R |only spicy-0.13.0/spicy/R/table_continuous.R | 3111 ++++- spicy-0.13.0/spicy/R/table_continuous_lm.R | 4185 ++++--- spicy-0.13.0/spicy/R/table_continuous_lm_print.R | 238 spicy-0.13.0/spicy/R/table_continuous_lm_render.R | 1131 + spicy-0.13.0/spicy/R/table_continuous_print.R | 154 spicy-0.13.0/spicy/R/table_continuous_svy.R |only spicy-0.13.0/spicy/R/table_continuous_svy_print.R |only spicy-0.13.0/spicy/R/table_helpers.R | 322 spicy-0.13.0/spicy/R/table_outcome.R |only spicy-0.13.0/spicy/R/table_outcome_print.R |only spicy-0.13.0/spicy/R/table_regression.R | 2657 ++++ spicy-0.13.0/spicy/R/table_regression_models.R |only spicy-0.13.0/spicy/R/tables_ascii.R | 1778 +-- spicy-0.13.0/spicy/R/tables_structured.R |only spicy-0.13.0/spicy/R/tt_theme.R |only spicy-0.13.0/spicy/R/user_na.R |only spicy-0.13.0/spicy/R/varlist-title.R | 100 spicy-0.13.0/spicy/R/varlist-values.R | 735 - spicy-0.13.0/spicy/R/varlist.R | 63 spicy-0.13.0/spicy/R/vcov.R |only spicy-0.13.0/spicy/R/weighted_stats.R |only spicy-0.13.0/spicy/README.md | 450 spicy-0.13.0/spicy/build/partial.rdb |binary spicy-0.13.0/spicy/build/vignette.rds |binary spicy-0.13.0/spicy/inst/CITATION | 16 spicy-0.13.0/spicy/inst/WORDLIST | 356 spicy-0.13.0/spicy/inst/doc/spicy.R | 25 spicy-0.13.0/spicy/inst/doc/spicy.Rmd | 497 spicy-0.13.0/spicy/inst/doc/spicy.html | 377 spicy-0.13.0/spicy/man/as.data.frame.spicy_categorical_svy_table.Rd |only spicy-0.13.0/spicy/man/as.data.frame.spicy_continuous_svy_table.Rd |only spicy-0.13.0/spicy/man/as.data.frame.spicy_outcome_table.Rd |only spicy-0.13.0/spicy/man/as.data.frame.spicy_regression_table.Rd | 13 spicy-0.13.0/spicy/man/as_flextable.spicy_flextable.Rd |only spicy-0.13.0/spicy/man/as_structured.Rd | 269 spicy-0.13.0/spicy/man/assoc_measures.Rd | 210 spicy-0.13.0/spicy/man/build_ascii_table.Rd | 17 spicy-0.13.0/spicy/man/code_book.Rd | 286 spicy-0.13.0/spicy/man/contingency_coef.Rd | 137 spicy-0.13.0/spicy/man/copy_clipboard.Rd | 40 spicy-0.13.0/spicy/man/count_n.Rd | 65 spicy-0.13.0/spicy/man/cramer_v.Rd | 27 spicy-0.13.0/spicy/man/cross_tab.Rd | 117 spicy-0.13.0/spicy/man/freq.Rd | 150 spicy-0.13.0/spicy/man/gamma_gk.Rd | 149 spicy-0.13.0/spicy/man/goodman_kruskal_tau.Rd | 164 spicy-0.13.0/spicy/man/inline.Rd |only spicy-0.13.0/spicy/man/kendall_tau_b.Rd | 154 spicy-0.13.0/spicy/man/kendall_tau_c.Rd | 156 spicy-0.13.0/spicy/man/label_from_names.Rd | 7 spicy-0.13.0/spicy/man/lambda_gk.Rd | 170 spicy-0.13.0/spicy/man/mean_n.Rd | 53 spicy-0.13.0/spicy/man/phi.Rd | 144 spicy-0.13.0/spicy/man/print.spicy_categorical_svy_table.Rd |only spicy-0.13.0/spicy/man/print.spicy_categorical_table.Rd | 50 spicy-0.13.0/spicy/man/print.spicy_continuous_svy_table.Rd |only spicy-0.13.0/spicy/man/print.spicy_cross_table.Rd | 49 spicy-0.13.0/spicy/man/print.spicy_flextable.Rd |only spicy-0.13.0/spicy/man/print.spicy_freq_table.Rd | 52 spicy-0.13.0/spicy/man/print.spicy_gt.Rd |only spicy-0.13.0/spicy/man/print.spicy_outcome_table.Rd |only spicy-0.13.0/spicy/man/print.spicy_regression_frame.Rd |only spicy-0.13.0/spicy/man/print.spicy_regression_table.Rd |only spicy-0.13.0/spicy/man/print.spicy_style.Rd |only spicy-0.13.0/spicy/man/sochealth.Rd | 2 spicy-0.13.0/spicy/man/somers_d.Rd | 193 spicy-0.13.0/spicy/man/spicy-package.Rd | 140 spicy-0.13.0/spicy/man/spicy_labels.Rd |only spicy-0.13.0/spicy/man/spicy_print_table.Rd | 297 spicy-0.13.0/spicy/man/spicy_style.Rd |only spicy-0.13.0/spicy/man/sum_n.Rd | 53 spicy-0.13.0/spicy/man/table_categorical.Rd | 1092 + spicy-0.13.0/spicy/man/table_categorical_svy.Rd |only spicy-0.13.0/spicy/man/table_continuous.Rd | 1314 +- spicy-0.13.0/spicy/man/table_continuous_lm.Rd | 236 spicy-0.13.0/spicy/man/table_continuous_svy.Rd |only spicy-0.13.0/spicy/man/table_outcome.Rd |only spicy-0.13.0/spicy/man/table_regression.Rd | 1066 + spicy-0.13.0/spicy/man/table_regression_models.Rd |only spicy-0.13.0/spicy/man/table_regression_uv.Rd |only spicy-0.13.0/spicy/man/terms.spicy_uv_screen.Rd |only spicy-0.13.0/spicy/man/tidy.spicy_categorical_svy_table.Rd |only spicy-0.13.0/spicy/man/tidy.spicy_categorical_table.Rd | 3 spicy-0.13.0/spicy/man/tidy.spicy_continuous_lm_table.Rd | 3 spicy-0.13.0/spicy/man/tidy.spicy_continuous_svy_table.Rd |only spicy-0.13.0/spicy/man/tidy.spicy_continuous_table.Rd | 109 spicy-0.13.0/spicy/man/tidy.spicy_outcome_table.Rd |only spicy-0.13.0/spicy/man/tidy.spicy_regression_table.Rd | 16 spicy-0.13.0/spicy/man/uncertainty_coef.Rd | 206 spicy-0.13.0/spicy/man/varlist.Rd | 51 spicy-0.13.0/spicy/man/yule_q.Rd | 149 spicy-0.13.0/spicy/tests/testthat.R | 56 spicy-0.13.0/spicy/tests/testthat/_snaps/i18n.md |only spicy-0.13.0/spicy/tests/testthat/_snaps/i18n_language.md |only spicy-0.13.0/spicy/tests/testthat/_snaps/mlogit_two_segment.md |only spicy-0.13.0/spicy/tests/testthat/_snaps/multinom_columns.md |only spicy-0.13.0/spicy/tests/testthat/_snaps/regression_uv.md |only spicy-0.13.0/spicy/tests/testthat/_snaps/smd-engines.md |only spicy-0.13.0/spicy/tests/testthat/_snaps/snapshots.md | 30 spicy-0.13.0/spicy/tests/testthat/_snaps/spicy_style.md |only spicy-0.13.0/spicy/tests/testthat/_snaps/survey_edges.md |only spicy-0.13.0/spicy/tests/testthat/_snaps/table_categorical_svy.md |only spicy-0.13.0/spicy/tests/testthat/_snaps/table_continuous_svy.md |only spicy-0.13.0/spicy/tests/testthat/_snaps/table_outcome.md |only spicy-0.13.0/spicy/tests/testthat/_snaps/table_regression.md | 34 spicy-0.13.0/spicy/tests/testthat/helper-oracle.R |only spicy-0.13.0/spicy/tests/testthat/helper-stan-cache.R |only spicy-0.13.0/spicy/tests/testthat/setup.R |only spicy-0.13.0/spicy/tests/testthat/test-ame-by-class.R |only spicy-0.13.0/spicy/tests/testthat/test-ame_mixed.R |only spicy-0.13.0/spicy/tests/testthat/test-ascii_panel_polish.R |only spicy-0.13.0/spicy/tests/testthat/test-assoc.R | 523 spicy-0.13.0/spicy/tests/testthat/test-betareg_precision_fitstat.R |only spicy-0.13.0/spicy/tests/testthat/test-boot_percentile.R |only spicy-0.13.0/spicy/tests/testthat/test-clipboard_payload.R |only spicy-0.13.0/spicy/tests/testthat/test-clm_scale_block.R |only spicy-0.13.0/spicy/tests/testthat/test-component_blocks.R |only spicy-0.13.0/spicy/tests/testthat/test-copy_clipboard.R | 332 spicy-0.13.0/spicy/tests/testthat/test-correctness-sweep.R |only spicy-0.13.0/spicy/tests/testthat/test-correlation_se_ci.R |only spicy-0.13.0/spicy/tests/testthat/test-count_n.R | 116 spicy-0.13.0/spicy/tests/testthat/test-cov-abort.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-ame-bayes-table.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-ame.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-bayes-refusals.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-cluster-robust-df.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-compute-vcov-gaps.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-descriptive-gaps.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-frame-class-gaps.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-frame_core.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-glm_compute.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-glmmTMB.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-inline-gaps.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-lm_compute.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-lm_helpers.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-merMod.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-nlme.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-partial.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-pregel-internals.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-pregel-misc.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-pregel-stan.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-pregel-svy.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_align.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_broom.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_dispatch.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_extract.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_frame_estimatr.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_frame_fixest.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_frame_flexsurv_selection.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_frame_mgcv.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_frame_mlogit_betareg.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_frame_multinom.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_frame_ordinal.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_frame_pscl.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_frame_quantreg_AER.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_frame_rms.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_frame_survival.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_frame_svyglm.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_render.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_structured.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-regression_validate.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-render-cells.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-standardize.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-standardize_glm.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-survival-estimand-gaps.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-table_categorical.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-table_categorical_print.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-table_continuous-gaps.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-table_continuous.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-table_continuous_lm.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-table_continuous_lm_print.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-table_continuous_lm_render.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-table_outcome-gaps.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-titlefooter-notes.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-titlefooter.R |only spicy-0.13.0/spicy/tests/testthat/test-cov-varlist-title.R |only spicy-0.13.0/spicy/tests/testthat/test-cov100-ame_core.R |only spicy-0.13.0/spicy/tests/testthat/test-cov100-descriptive.R |only spicy-0.13.0/spicy/tests/testthat/test-cov100-dispatch_render.R |only spicy-0.13.0/spicy/tests/testthat/test-cov100-frame_validate.R |only spicy-0.13.0/spicy/tests/testthat/test-cov100-frames_misc.R |only spicy-0.13.0/spicy/tests/testthat/test-cov100-mixed.R |only spicy-0.13.0/spicy/tests/testthat/test-cov100-ordinal.R |only spicy-0.13.0/spicy/tests/testthat/test-cov100-re_test.R |only spicy-0.13.0/spicy/tests/testthat/test-cov100-titlefooter.R |only spicy-0.13.0/spicy/tests/testthat/test-cov100-vcov_glm.R |only spicy-0.13.0/spicy/tests/testthat/test-cox-exponentiate-ame.R |only spicy-0.13.0/spicy/tests/testthat/test-cramer_v.R | 98 spicy-0.13.0/spicy/tests/testthat/test-cran_tier.R |only spicy-0.13.0/spicy/tests/testthat/test-cross_tab.R | 825 + spicy-0.13.0/spicy/tests/testthat/test-engine-escaping.R |only spicy-0.13.0/spicy/tests/testthat/test-engine_parity_contract.R |only spicy-0.13.0/spicy/tests/testthat/test-engine_parity_flextable.R |only spicy-0.13.0/spicy/tests/testthat/test-engine_parity_tinytable.R |only spicy-0.13.0/spicy/tests/testthat/test-engine_parity_word.R |only spicy-0.13.0/spicy/tests/testthat/test-engine_parity_xlsx.R |only spicy-0.13.0/spicy/tests/testthat/test-env_leak_refits.R |only spicy-0.13.0/spicy/tests/testthat/test-exponentiate-classes.R |only spicy-0.13.0/spicy/tests/testthat/test-exponentiate_gate.R |only spicy-0.13.0/spicy/tests/testthat/test-exponentiate_mixed.R |only spicy-0.13.0/spicy/tests/testthat/test-export_desc_table.R |only spicy-0.13.0/spicy/tests/testthat/test-family-parity.R |only spicy-0.13.0/spicy/tests/testthat/test-fit-stats-defaults.R |only spicy-0.13.0/spicy/tests/testthat/test-fixest_fe_block.R |only spicy-0.13.0/spicy/tests/testthat/test-footer_typography.R |only spicy-0.13.0/spicy/tests/testthat/test-formal-shadowing-lint.R |only spicy-0.13.0/spicy/tests/testthat/test-freq.R | 684 - spicy-0.13.0/spicy/tests/testthat/test-freq_print.R | 220 spicy-0.13.0/spicy/tests/testthat/test-glmer_panel.R |only spicy-0.13.0/spicy/tests/testthat/test-gt-spanner-ids.R |only spicy-0.13.0/spicy/tests/testthat/test-gt-title.R |only spicy-0.13.0/spicy/tests/testthat/test-i18n-titles.R |only spicy-0.13.0/spicy/tests/testthat/test-i18n.R |only spicy-0.13.0/spicy/tests/testthat/test-i18n_language.R |only spicy-0.13.0/spicy/tests/testthat/test-inline-messages.R |only spicy-0.13.0/spicy/tests/testthat/test-inline.R |only spicy-0.13.0/spicy/tests/testthat/test-label_from_names.R | 332 spicy-0.13.0/spicy/tests/testthat/test-lm_helpers.R | 1535 +- spicy-0.13.0/spicy/tests/testthat/test-mean_n.R | 20 spicy-0.13.0/spicy/tests/testthat/test-mixed_inference_footer.R |only spicy-0.13.0/spicy/tests/testthat/test-mlogit_two_segment.R |only spicy-0.13.0/spicy/tests/testthat/test-multinom_columns.R |only spicy-0.13.0/spicy/tests/testthat/test-multinom_outcome_labels.R |only spicy-0.13.0/spicy/tests/testthat/test-multinom_pseudo_r2.R |only spicy-0.13.0/spicy/tests/testthat/test-n_events_column.R |only spicy-0.13.0/spicy/tests/testthat/test-nakagawa_r2.R |only spicy-0.13.0/spicy/tests/testthat/test-negbin_dispersion_fitstat.R |only spicy-0.13.0/spicy/tests/testthat/test-nested_likelihood_classes.R |only spicy-0.13.0/spicy/tests/testthat/test-nested_lme_re_block.R |only spicy-0.13.0/spicy/tests/testthat/test-nested_lrt_cox.R |only spicy-0.13.0/spicy/tests/testthat/test-nested_lrt_dispersion.R |only spicy-0.13.0/spicy/tests/testthat/test-nested_mixed.R |only spicy-0.13.0/spicy/tests/testthat/test-nested_multinom.R |only spicy-0.13.0/spicy/tests/testthat/test-nested_rms.R |only spicy-0.13.0/spicy/tests/testthat/test-nonconvergence_note.R |only spicy-0.13.0/spicy/tests/testthat/test-nontreatment_contrasts.R |only spicy-0.13.0/spicy/tests/testthat/test-null_lrt_mixed.R |only spicy-0.13.0/spicy/tests/testthat/test-oracle-pspp-regression.R |only spicy-0.13.0/spicy/tests/testthat/test-ordinal-ppo.R |only spicy-0.13.0/spicy/tests/testthat/test-ordinal-profile-ci.R |only spicy-0.13.0/spicy/tests/testthat/test-ordinal-thresholds-rows.R |only spicy-0.13.0/spicy/tests/testthat/test-ordinal_thresholds_footer.R |only spicy-0.13.0/spicy/tests/testthat/test-partial_chi2_mixed.R |only spicy-0.13.0/spicy/tests/testthat/test-polish_7c22.R |only spicy-0.13.0/spicy/tests/testthat/test-polish_7c23.R |only spicy-0.13.0/spicy/tests/testthat/test-polish_7c24.R |only spicy-0.13.0/spicy/tests/testthat/test-quarto_word_rendering.R |only spicy-0.13.0/spicy/tests/testthat/test-random_effects_api_args.R |only spicy-0.13.0/spicy/tests/testthat/test-random_effects_footer.R |only spicy-0.13.0/spicy/tests/testthat/test-random_effects_panel.R |only spicy-0.13.0/spicy/tests/testthat/test-random_effects_rows.R |only spicy-0.13.0/spicy/tests/testthat/test-random_effects_scale_correlation.R |only spicy-0.13.0/spicy/tests/testthat/test-random_effects_wald_se_ci.R |only spicy-0.13.0/spicy/tests/testthat/test-re_test.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_align.R | 376 spicy-0.13.0/spicy/tests/testthat/test-regression_ame_factor_ordering.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_ame_satterthwaite.R | 722 - spicy-0.13.0/spicy/tests/testthat/test-regression_broom.R | 374 spicy-0.13.0/spicy/tests/testthat/test-regression_dispatch_engines.R | 646 - spicy-0.13.0/spicy/tests/testthat/test-regression_frame.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_MASS.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_estimatr.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_fixest.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_flexsurv_selection.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_geepack.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_glmmTMB.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_lm.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_merMod.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_mgcv.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_mlogit_betareg.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_multinom.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_nlme.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_nls.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_ordinal.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_pscl.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_quantreg_AER.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_rms.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_stan.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_survival.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_svycoxph.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_svyglm.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_frame_svyolr.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_glm.R | 2047 ++- spicy-0.13.0/spicy/tests/testthat/test-regression_nested.R | 558 spicy-0.13.0/spicy/tests/testthat/test-regression_render.R | 179 spicy-0.13.0/spicy/tests/testthat/test-regression_structured.R | 407 spicy-0.13.0/spicy/tests/testthat/test-regression_transform.R | 334 spicy-0.13.0/spicy/tests/testthat/test-regression_uv.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_uv_coxph.R |only spicy-0.13.0/spicy/tests/testthat/test-regression_validate_branches.R | 613 - spicy-0.13.0/spicy/tests/testthat/test-reserved_residual_group.R |only spicy-0.13.0/spicy/tests/testthat/test-robust-vcov-cbind.R |only spicy-0.13.0/spicy/tests/testthat/test-robust-vcov-glm-classes.R |only spicy-0.13.0/spicy/tests/testthat/test-robust-vcov-mixed.R |only spicy-0.13.0/spicy/tests/testthat/test-robust-vcov-multinom.R |only spicy-0.13.0/spicy/tests/testthat/test-robust-vcov-phase3-matrix.R |only spicy-0.13.0/spicy/tests/testthat/test-robust-vcov-rank-deficient.R |only spicy-0.13.0/spicy/tests/testthat/test-robust-vcov-rms.R |only spicy-0.13.0/spicy/tests/testthat/test-robust-vcov-survival.R |only spicy-0.13.0/spicy/tests/testthat/test-rq_vcov_family.R |only spicy-0.13.0/spicy/tests/testthat/test-selection_helpers.R | 124 spicy-0.13.0/spicy/tests/testthat/test-singular_footer_mixed.R |only spicy-0.13.0/spicy/tests/testthat/test-smd-engines.R |only spicy-0.13.0/spicy/tests/testthat/test-smd.R |only spicy-0.13.0/spicy/tests/testthat/test-snapshots.R | 486 spicy-0.13.0/spicy/tests/testthat/test-spicy_style.R |only spicy-0.13.0/spicy/tests/testthat/test-stan_bayes_gates_re.R |only spicy-0.13.0/spicy/tests/testthat/test-stan_fixture_cache.R |only spicy-0.13.0/spicy/tests/testthat/test-standardize_interactions.R |only spicy-0.13.0/spicy/tests/testthat/test-standardized-classes.R |only spicy-0.13.0/spicy/tests/testthat/test-standardized_mixed.R |only spicy-0.13.0/spicy/tests/testthat/test-stat_header_and_guards.R |only spicy-0.13.0/spicy/tests/testthat/test-structured-descriptives.R |only spicy-0.13.0/spicy/tests/testthat/test-structured-parity.R |only spicy-0.13.0/spicy/tests/testthat/test-sum_n.R | 16 spicy-0.13.0/spicy/tests/testthat/test-survey-design-guards.R |only spicy-0.13.0/spicy/tests/testthat/test-survey_ame_reference.R |only spicy-0.13.0/spicy/tests/testthat/test-survey_edges.R |only spicy-0.13.0/spicy/tests/testthat/test-survey_fit_stats_footer.R |only spicy-0.13.0/spicy/tests/testthat/test-survey_helpers.R |only spicy-0.13.0/spicy/tests/testthat/test-survey_i18n.R |only spicy-0.13.0/spicy/tests/testthat/test-survey_vcov_label.R |only spicy-0.13.0/spicy/tests/testthat/test-survey_wrong_numbers.R |only spicy-0.13.0/spicy/tests/testthat/test-survival_estimands.R |only spicy-0.13.0/spicy/tests/testthat/test-survival_estimands_cov.R |only spicy-0.13.0/spicy/tests/testthat/test-survival_estimands_strata.R |only spicy-0.13.0/spicy/tests/testthat/test-survival_estimands_survreg.R |only spicy-0.13.0/spicy/tests/testthat/test-survival_estimands_ties.R |only spicy-0.13.0/spicy/tests/testthat/test-survival_footer.R |only spicy-0.13.0/spicy/tests/testthat/test-table_categorical.R | 5894 ++++++---- spicy-0.13.0/spicy/tests/testthat/test-table_categorical_smd.R |only spicy-0.13.0/spicy/tests/testthat/test-table_categorical_svy.R |only spicy-0.13.0/spicy/tests/testthat/test-table_continuous.R | 1643 ++ spicy-0.13.0/spicy/tests/testthat/test-table_continuous_lm.R | 1888 ++- spicy-0.13.0/spicy/tests/testthat/test-table_continuous_smd.R |only spicy-0.13.0/spicy/tests/testthat/test-table_continuous_svy.R |only spicy-0.13.0/spicy/tests/testthat/test-table_continuous_weights.R |only spicy-0.13.0/spicy/tests/testthat/test-table_outcome.R |only spicy-0.13.0/spicy/tests/testthat/test-table_outcome_oracles.R |only spicy-0.13.0/spicy/tests/testthat/test-table_outcome_render.R |only spicy-0.13.0/spicy/tests/testthat/test-table_outcome_structured.R |only spicy-0.13.0/spicy/tests/testthat/test-table_outcome_weights.R |only spicy-0.13.0/spicy/tests/testthat/test-table_regression.R | 1729 ++ spicy-0.13.0/spicy/tests/testthat/test-table_regression_models.R |only spicy-0.13.0/spicy/tests/testthat/test-tables_ascii.R | 296 spicy-0.13.0/spicy/tests/testthat/test-tclm_notes.R |only spicy-0.13.0/spicy/tests/testthat/test-tools-ascii_sentinel.R |only spicy-0.13.0/spicy/tests/testthat/test-user_na.R |only spicy-0.13.0/spicy/tests/testthat/test-uv_estimands.R |only spicy-0.13.0/spicy/tests/testthat/test-varlist.R | 1687 +- spicy-0.13.0/spicy/tests/testthat/test-vcov-robust-no-silent-fallback.R |only spicy-0.13.0/spicy/tests/testthat/test-vcov_kind_canon.R |only spicy-0.13.0/spicy/tests/testthat/test-vignette-index.R |only spicy-0.13.0/spicy/tools/ascii_sentinel.R |only spicy-0.13.0/spicy/tools/benchmark_cross_tab.R | 268 spicy-0.13.0/spicy/tools/coverage.R |only spicy-0.13.0/spicy/tools/coverage_table_continuous_lm_probes.R | 16 spicy-0.13.0/spicy/tools/run_suite.R |only spicy-0.13.0/spicy/vignettes/spicy.Rmd | 497 473 files changed, 60430 insertions(+), 24702 deletions(-)
Title: The 'pic' Graphics Language Rendered to SVG, PNG and PDF
Description: Renders diagrams written in the 'pic' picture-drawing language
(Kernighan, 1984) to SVG, PNG and PDF, using 'rpic'
<https://github.com/milkway/rpic-lang>, a reimplementation of 'pic' in
'Rust' with no system dependencies. Includes a native circuit-element
library in the spirit of 'circuit_macros', TeX math labels typeset
natively, structured compile diagnostics, and a 'knitr' language engine
for inline diagrams in 'R Markdown' and 'Quarto' documents.
Author: Andre Leite [aut, cre, cph] ,
The authors of the dependency Rust crates [cph]
Maintainer: Andre Leite <leite@castlab.org>
Diff between rpic versions 0.6.2 dated 2026-07-15 and 0.11.3 dated 2026-10-01
DESCRIPTION | 14 - MD5 | 26 +- NEWS.md | 27 ++ R/rpic.R | 9 inst/AUTHORS | 144 ++++++------ inst/doc/circuits.html | 4 man/rpic-package.Rd | 4 man/rpic_manifest.Rd | 9 src/rust/Cargo.lock | 481 +++++++++++++++++++++++++---------------- src/rust/Cargo.toml | 8 src/rust/vendor.tar.xz |binary vignettes/figures/animate.json | 2 vignettes/figures/elements.svg | 16 - vignettes/figures/npn.svg | 30 +- 14 files changed, 465 insertions(+), 309 deletions(-)
Title: Causal Mediation Analysis Using Weighting Approach
Description: We implement causal mediation analysis using the methods proposed by Hong (2010) and Hong, Deutsch & Hill (2015) <doi:10.3102/1076998615583902>. It allows the estimation and hypothesis testing of causal mediation effects through ratio of mediator probability weights (RMPW). This strategy conveniently relaxes the assumption of no treatment-by-mediator interaction while greatly simplifying the outcome model specification without invoking strong distributional assumptions. We also implement a sensitivity analysis by extending the RMPW method to assess potential bias in the presence of omitted pretreatment or posttreatment covariates. The sensitivity analysis strategy was proposed by Hong, Qin, and Yang (2018) <doi:10.3102/1076998617749561>.
Author: Xu Qin [aut, cre],
Guanglei Hong [aut],
Fan Yang [aut]
Maintainer: Xu Qin <xuqin@uchicago.edu>
Diff between rmpw versions 0.0.6 dated 2025-11-17 and 0.0.7 dated 2026-10-01
DESCRIPTION | 12 - MD5 | 18 - NAMESPACE | 2 R/rmpw.R | 481 ++++++++++++++++++++---------------------------- build/partial.rdb |binary data/Riverside.rda |binary man/Riverside.Rd | 3 man/rmpw.Rd | 49 ++-- man/sensitivity.Rd | 32 ++- man/sensitivity.plot.Rd | 30 ++ 10 files changed, 299 insertions(+), 328 deletions(-)
Title: Quantile Autoregressive Distributed Lag Model
Description: Implements the Quantile Autoregressive Distributed Lag (QARDL)
model of Cho, Kim and Shin (2015) <doi:10.1016/j.jeconom.2015.05.003>.
Estimates quantile-specific long-run (beta), short-run autoregressive (phi),
and impact (gamma) parameters. Features include BIC-based automatic lag
selection, Error Correction Model (ECM) parameterization, Wald tests for
parameter constancy across quantiles, rolling/recursive QARDL estimation,
Monte Carlo simulation, and publication-ready output tables.
Author: Muhammad Alkhalaf [aut, cre, cph] ,
Jin Seo Cho [ctb] ,
Tae-Hwan Kim [ctb] ,
Yongcheol Shin [ctb]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between qardlr versions 1.0.1 dated 2026-03-13 and 1.1.1 dated 2026-10-01
DESCRIPTION | 14 +--- MD5 | 47 +++++++------- NEWS.md |only R/data.R | 2 R/qardl.R | 144 ++++++++++++++++++++------------------------ R/qardl_bic.R | 2 R/qardl_cks.R |only R/qardl_print.R | 6 - R/qardl_rolling.R | 27 ++++---- R/qardl_simulate.R | 21 ++++-- R/qardl_wald.R | 132 ++++++++++++++++------------------------ R/qardlr-package.R | 2 README.md | 25 ++++++- build/partial.rdb |binary inst |only man/cks_blocks.Rd |only man/cks_covariance.Rd |only man/compute_longrun.Rd | 2 man/qardl.Rd | 25 +++++-- man/qardl_bic_select.Rd | 2 man/qardl_rolling.Rd | 4 - man/qardl_sim.Rd | 2 man/qardl_simulate.Rd | 2 man/qardl_wald.Rd | 5 - man/qardlr-package.Rd | 3 man/wald_constancy_test.Rd | 14 ++-- tests/testthat/test-qardl.R | 17 +++++ 27 files changed, 266 insertions(+), 232 deletions(-)
Title: Multivariate ARDL Unit Root Test
Description: Implements the multivariate autoregressive distributed lag (ARDL)
unit root test of Sam, McNown, Goh and Goh (2025)
<doi:10.1080/03796205.2024.2439101>. The test augments the ADF regression
with the lagged level, the current difference and lagged differences of
one or more covariates so that cointegration between the series under
test and the covariates is taken into account. The t statistic on the
lagged level of the series and the joint F statistic on the lagged levels
of the covariates are bootstrapped with the respective null imposed
(residual bootstrap), giving critical values and p-values. Provides
automatic lag selection via AIC or BIC, diagnostic plots, and the
four-case classification of the order of integration of the series.
Author: Muhammad Alkhalaf [aut, cre, cph]
Maintainer: Muhammad Alkhalaf <muhammedalkhalaf@gmail.com>
Diff between mvardlurt versions 1.0.2 dated 2026-03-16 and 1.1.0 dated 2026-10-01
DESCRIPTION | 28 + MD5 | 31 + NAMESPACE | 5 NEWS.md | 81 +++++ R/mvardlurt.R | 384 +++++++++++++----------- R/plot.R | 29 + R/print.R | 193 ++++++------ R/utils.R | 626 +++++++++++++++------------------------- README.md | 152 +++++---- build/partial.rdb |binary inst |only man/autoplot.mvardlurt.Rd | 62 +-- man/mvardlurt-package.Rd | 130 ++++---- man/mvardlurt.Rd | 302 +++++++++++-------- man/plot.mvardlurt.Rd | 100 +++--- man/print.mvardlurt.Rd | 131 ++++---- tests/testthat/test-mvardlurt.R | 480 +++++++++++++++--------------- 17 files changed, 1416 insertions(+), 1318 deletions(-)
Title: Spatial MIDAS Models Using INLA
Description: Provides tools for fitting spatial Mixed-Data Sampling (MIDAS) regression models using Integrated Nested Laplace Approximation (INLA) (Rue et al., 2009) <doi:10.1111/j.1467-9868.2008.00700.x>. The package is designed for settings where responses and explanatory variables are observed at different temporal frequencies and supports both constant and spatially varying regression coefficients.
Author: Stephen Jun Villejo [aut, cre]
Maintainer: Stephen Jun Villejo <s.villejo@imperial.ac.uk>
Diff between midasINLA versions 0.1.0 dated 2026-09-17 and 0.1.1 dated 2026-10-01
DESCRIPTION | 8 MD5 | 25 +-- R/estimation_functions.R | 8 inst/doc/midasINLA.R | 104 ++++++++---- inst/doc/midasINLA.Rmd | 109 +++++++++---- inst/doc/midasINLA.html | 329 ++++++++++++++++++---------------------- inst/extdata |only man/compute_beta_spatial.Rd | 2 man/compute_weights.Rd | 2 man/fit_Minla_spatial.Rd | 2 man/predict_midas.Rd | 2 tests/testthat/fixtures |only tests/testthat/test-functions.R | 148 ++++++----------- vignettes/midasINLA.Rmd | 109 +++++++++---- 14 files changed, 469 insertions(+), 379 deletions(-)
Title: Graphic Styles of Emile Cheysson for 'ggplot2'
Description: Implements for 'ggplot2' the stylistic elements (fonts, hatched patterns, color palettes) used by 'Emile
Cheysson' in the 'Albums de Statistique Graphique', sometimes called the pinnacle of the
Golden Age of Statistical Graphics.
Author: Michael Friendly [aut, cre] ,
RJ Andrews [ctb],
Tom Shanley [ctb],
Kenneth Fields [ctb]
Maintainer: Michael Friendly <friendly@yorku.ca>
Diff between ggCheysson versions 1.0.1 dated 2026-09-26 and 1.1.0 dated 2026-10-01
DESCRIPTION | 8 MD5 | 116 +- NAMESPACE | 4 NEWS.md | 105 ++ R/cheysson_name.R |only R/data.R | 141 ++- R/fonts.R | 447 +++++----- R/globals.R | 2 R/migration.R |only R/palettes.R | 649 +++++++-------- R/patterns.R | 88 -- R/scale_cheysson.R |only R/scale_patterns.R | 392 +++------ R/scales.R | 182 ++-- R/theme.R | 757 +++++++++-------- README.md | 259 ++++-- build/vignette.rds |binary data/cheysson_labels.rda |only data/cheysson_palettes.rda |binary data/cheysson_patterns.rda |binary inst/WORDLIST | 118 +- inst/doc/combining-colors-patterns.R |only inst/doc/combining-colors-patterns.Rmd |only inst/doc/combining-colors-patterns.html |only inst/doc/getting-started.R | 61 - inst/doc/getting-started.Rmd | 69 - inst/doc/getting-started.html | 220 ++--- inst/doc/guerry-maps.R | 123 +- inst/doc/guerry-maps.Rmd | 1181 +++++++++++++--------------- inst/doc/guerry-maps.html | 376 ++++---- man/albumImages.Rd | 127 +-- man/cheysson_font.Rd | 44 - man/cheysson_font_size_adjust.Rd |only man/cheysson_fonts.Rd | 123 +- man/cheysson_fonts_available.Rd | 48 - man/cheysson_labels.Rd |only man/cheysson_name.Rd |only man/cheysson_pal.Rd | 84 + man/cheysson_palettes.Rd | 131 +-- man/cheysson_pattern.Rd | 69 - man/cheysson_pattern_params.Rd | 57 - man/cheysson_patterns.Rd | 110 +- man/figures/README-base-size-14-1.png |only man/figures/README-base-size-16-1.png |only man/figures/README-complete-aesthetic-1.png |binary man/figures/README-pattern-bars-1.png |only man/figures/README-pattern-swatches-1.png |only man/figures/README-show-palette-1.png |binary man/figures/README-show-palette-grid-1.png |binary man/figures/README-show-palette-multi-1.png |binary man/figures/README-with-fonts-1.png |binary man/get_pattern_param.Rd | 44 - man/list_cheysson_pals.Rd | 60 - man/list_cheysson_patterns.Rd | 52 - man/load_cheysson_fonts.Rd | 137 +-- man/scale_cheysson.Rd | 166 ++- man/scale_color_cheysson.Rd |only man/scale_fill_cheysson_pattern.Rd | 90 +- man/scale_pattern_cheysson.Rd | 173 ++-- man/show_palette.Rd | 86 +- man/show_palettes.Rd | 70 - man/theme_cheysson.Rd | 148 +-- man/theme_cheysson_map.Rd | 96 +- man/theme_cheysson_minimal.Rd | 96 +- vignettes/combining-colors-patterns.Rmd |only vignettes/getting-started.Rmd | 69 - vignettes/guerry-maps.Rmd | 1181 +++++++++++++--------------- 67 files changed, 4481 insertions(+), 4078 deletions(-)
Title: Estimation and Visualization of Linear Panel Event Studies
Description: Estimates linear panel event study models. Plots coefficients following the recommendations in Freyaldenhoven et al. (2021) <doi:10.3386/w29170>. Includes sup-t bands, testing for key hypotheses, least wiggly path through the Wald region. Allows instrumental variables estimation following Freyaldenhoven et al. (2019) <doi:10.1257/aer.20180609>.
Author: Simon Freyaldenhoven [aut],
Christian Hansen [aut],
Jorge Perez Perez [aut],
Jesse Shapiro [aut],
Veli Andirin [aut],
Richard Calvo [aut],
Santiago Hermo [aut, cre],
Nathan Schor [aut],
Emily Wang [aut],
JMSLab [cph],
Ryan Kessler [cph]
Maintainer: Santiago Hermo <santiago.hermo@monash.edu>
Diff between eventstudyr versions 1.2.0 dated 2026-04-05 and 1.2.1 dated 2026-10-01
DESCRIPTION | 8 - MD5 | 22 +-- NAMESPACE | 62 ++++---- R/AddSmPath.R | 2 R/AddSuptBand.R | 2 R/EventStudyPlot.R | 2 build/vignette.rds |binary inst/doc/documentation.R | 16 +- inst/doc/documentation.html | 260 ++++++++++++++++++------------------ tests/testthat/test-AddSmPath.R | 18 ++ tests/testthat/test-EventStudyFHS.R | 3 tests/testthat/test-EventStudyOLS.R | 6 12 files changed, 213 insertions(+), 188 deletions(-)
Title: Detecting Extremal Values in a Normal Linear Model
Description: Provides a method to detect values poorly explained by a Gaussian linear model. The procedure is based on the maximum of the absolute value of the studentized residuals, which is a parameter-free statistic. This approach generalizes several procedures used to detect abnormal values during longitudinal monitoring of biological markers. Methodological details are provided in Berthelot G., Saulière G., and Dedecker J. (2025), "DEViaN-LM An R Package for Detecting Abnormal Values in the Gaussian Linear Model", HAL Id: hal-05230549, <https://hal.science/hal-05230549>, and in Berthelot G., Gelein B., Meinadier E., Orhant E., and Dedecker J. (2026), "A guide to z-score-based methods, with illustrations from biological data sets", The Journal of Sport and Exercise Science 10, 54–70, <doi:10.36905/jses.2026.01.06>.
Author: Guillaume Sauliere [aut] ,
Geoffroy Berthelot [aut, cre] ,
Jerome Dedecker [aut]
Maintainer: Geoffroy Berthelot <geoffroy.berthelot@insep.fr>
Diff between devianLM versions 1.1.0 dated 2026-04-30 and 1.1.1 dated 2026-10-01
DESCRIPTION | 12 +- MD5 | 22 ++-- NAMESPACE | 13 +- NEWS.md | 12 ++ R/data.R | 6 - R/devianlm_stats.R | 41 +++++++- build/partial.rdb |binary man/devianLM-package.Rd | 1 man/devianlm_stats.Rd | 1 man/get_devianlm_threshold.Rd | 7 + man/salary.Rd | 6 - src/devianlm_cpp.cpp | 206 ++++++++++++++++++++++-------------------- 12 files changed, 192 insertions(+), 135 deletions(-)
Title: Transformation Models
Description: Formula-based user-interfaces to specific transformation models
implemented in package 'mlt' (<DOI:10.32614/CRAN.package.mlt>, <DOI:10.32614/CRAN.package.mlt.docreg>).
Available models include Cox models, some parametric
survival models (Weibull, etc.), models for ordered categorical variables,
normal and non-normal (Box-Cox type) linear models, and continuous outcome logistic regression
(Lohse et al., 2017, <DOI:10.12688/f1000research.12934.1>). The underlying theory
is described in Hothorn et al. (2018) <DOI:10.1111/sjos.12291>. An extension to
transformation models for clustered data is provided (Barbanti and Hothorn, 2022,
<DOI:10.1093/biostatistics/kxac048>) and a tutorial explains applications in survival analysis
(Siegfried et al., 2025, <DOI:10.48550/arXiv.2402.06428>). Multivariate conditional transformation models
(Klein et al, 2022, <DOI:10.1111/sjos.12501>) and shift-scale transformation models (Siegfried et al, 2023,
<DOI:10.108 [...truncated...]
Author: Torsten Hothorn [aut, cre] ,
Luisa Barbanti [ctb] ,
Sandra Siegfried [aut] ,
Lucas Kook [aut] ,
Susanne Dandl [ctb] ,
Brian Ripley [ctb],
Bill Venables [ctb],
Douglas M. Bates [ctb],
Nadja Klein [ctb]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between tram versions 1.4-5 dated 2026-08-23 and 1.4-6 dated 2026-10-01
tram-1.4-5/tram/tests/Polr-Ex.Rout.save |only tram-1.4-6/tram/DESCRIPTION | 6 +-- tram-1.4-6/tram/MD5 | 43 ++++++++++++-------------- tram-1.4-6/tram/build/partial.rdb |binary tram-1.4-6/tram/inst/CITATION | 3 + tram-1.4-6/tram/inst/NEWS.Rd | 6 +++ tram-1.4-6/tram/inst/doc/NAMI.pdf |binary tram-1.4-6/tram/inst/doc/mtram.R | 2 - tram-1.4-6/tram/inst/doc/mtram.Rnw | 6 ++- tram-1.4-6/tram/inst/doc/mtram.pdf |binary tram-1.4-6/tram/inst/doc/survtram.pdf |binary tram-1.4-6/tram/inst/doc/tram.pdf |binary tram-1.4-6/tram/tests/Coxph-Ex.Rout.save | 6 +-- tram-1.4-6/tram/tests/Polr-Ex.R | 17 ++++------ tram-1.4-6/tram/tests/Survreg-Ex.Rout.save | 6 +-- tram-1.4-6/tram/tests/bugfixes.R | 19 ++++++----- tram-1.4-6/tram/tests/intercepts-Ex.R | 2 - tram-1.4-6/tram/tests/intercepts-Ex.Rout.save | 10 +++--- tram-1.4-6/tram/tests/mmlt-Ex.Rout.save | 6 +-- tram-1.4-6/tram/tests/mtram-Ex.R | 4 +- tram-1.4-6/tram/tests/mtram-Ex.Rout.save | 10 +++--- tram-1.4-6/tram/tests/stram-Ex.Rout.save | 4 +- tram-1.4-6/tram/vignettes/mtram.Rnw | 6 ++- 23 files changed, 85 insertions(+), 71 deletions(-)
Title: Reporting Tables
Description: Reporting tables often have structure that goes beyond simple
rectangular data. The 'rtables' package provides a framework for
declaring complex multi-level tabulations and then applying them to
data. This framework models both tabulation and the resulting tables
as hierarchical, tree-like objects which support sibling sub-tables,
arbitrary splitting or grouping of data in row and column dimensions,
cells containing multiple values, and the concept of contextual
summary computations. A convenient pipe-able interface is provided for
declaring table layouts and the corresponding computations, and then
applying them to data.
Author: Gabriel Becker [aut] ,
Adrian Waddell [aut],
Daniel Sabanes Bove [ctb],
Maximilian Mordig [ctb],
Davide Garolini [aut] ,
Emily de la Rua [aut] ,
Abinaya Yogasekaram [ctb] ,
Joe Zhu [aut, cre] ,
David Munoz Tord [ctb],
F. Hoffmann-La Roche AG [cph, fn [...truncated...]
Maintainer: Joe Zhu <joe.zhu@roche.com>
Diff between rtables versions 0.6.16 dated 2026-04-22 and 0.6.17 dated 2026-10-01
DESCRIPTION | 36 MD5 | 502 - NAMESPACE | 23 NEWS.md | 72 R/00tabletrees.R | 157 R/Viewer.R | 240 R/argument_conventions.R | 7 R/colby_constructors.R | 682 -- R/custom_split_funs.R | 14 R/default_split_funs.R | 70 R/indent.R | 176 R/make_split_fun.R | 24 R/nesting_impl.R |only R/package.R | 15 R/summary.R | 880 +- R/tree_accessors.R | 259 R/tt_afun_utils.R | 1282 +-- R/tt_as_df.R | 1424 ++-- R/tt_compare_tables.R | 560 - R/tt_compatibility.R | 2472 +++---- R/tt_dotabulation.R | 169 R/tt_export.R | 182 R/tt_paginate.R | 4 R/tt_pos_and_access.R | 3604 +++++------ R/tt_showmethods.R | 856 +- R/tt_sort.R | 614 - R/tt_toString.R | 1942 ++--- R/utils.R | 354 - R/validate_table_struct.R | 420 - README.md | 466 - build/vignette.rds |binary inst/WORDLIST | 92 inst/doc/advanced_usage.R | 342 - inst/doc/advanced_usage.Rmd | 508 - inst/doc/advanced_usage.html | 1272 +-- inst/doc/ard_how_to.R | 230 inst/doc/ard_how_to.Rmd | 334 - inst/doc/ard_how_to.html | 1791 ++--- inst/doc/baseline.R | 140 inst/doc/baseline.Rmd | 266 inst/doc/baseline.html | 967 +- inst/doc/clinical_trials.R | 1425 ++-- inst/doc/clinical_trials.Rmd | 2259 +++--- inst/doc/clinical_trials.html | 4579 ++++++-------- inst/doc/col_counts.R | 180 inst/doc/col_counts.Rmd | 466 - inst/doc/col_counts.html | 1125 +-- inst/doc/custom_appearance.R | 626 - inst/doc/custom_appearance.Rmd | 1132 +-- inst/doc/custom_appearance.html | 2620 +++----- inst/doc/example_analysis_coxreg.R | 604 - inst/doc/example_analysis_coxreg.Rmd | 784 +- inst/doc/example_analysis_coxreg.html | 1588 ++-- inst/doc/exploratory_analysis.R | 240 inst/doc/exploratory_analysis.Rmd | 576 - inst/doc/exploratory_analysis.html | 1528 ++-- inst/doc/format_precedence.R | 406 - inst/doc/format_precedence.Rmd | 782 +- inst/doc/format_precedence.html | 1550 ++-- inst/doc/guided_advanced.R |only inst/doc/guided_advanced.Rmd |only inst/doc/guided_advanced.html |only inst/doc/guided_advanced_afuns.R |only inst/doc/guided_advanced_afuns.Rmd |only inst/doc/guided_advanced_afuns.html |only inst/doc/guided_advanced_afuns_building_blocks.R |only inst/doc/guided_advanced_afuns_building_blocks.Rmd |only inst/doc/guided_advanced_afuns_building_blocks.html |only inst/doc/guided_advanced_afuns_rowsverticalsection.R |only inst/doc/guided_advanced_afuns_rowsverticalsection.Rmd |only inst/doc/guided_advanced_afuns_rowsverticalsection.html |only inst/doc/guided_advanced_afuns_spl_context.R |only inst/doc/guided_advanced_afuns_spl_context.Rmd |only inst/doc/guided_advanced_afuns_spl_context.html |only inst/doc/guided_advanced_split_funs.R |only inst/doc/guided_advanced_split_funs.Rmd |only inst/doc/guided_advanced_split_funs.html |only inst/doc/guided_advanced_split_funs_make_split_fun.R |only inst/doc/guided_advanced_split_funs_make_split_fun.Rmd |only inst/doc/guided_advanced_split_funs_make_split_fun.html |only inst/doc/guided_advanced_split_funs_new_bbbs.R |only inst/doc/guided_advanced_split_funs_new_bbbs.Rmd |only inst/doc/guided_advanced_split_funs_new_bbbs.html |only inst/doc/guided_advanced_split_funs_worked_ex.R |only inst/doc/guided_advanced_split_funs_worked_ex.Rmd |only inst/doc/guided_advanced_split_funs_worked_ex.html |only inst/doc/guided_advanced_tt.R |only inst/doc/guided_advanced_tt.Rmd |only inst/doc/guided_advanced_tt.html |only inst/doc/guided_advanced_tt_access.R |only inst/doc/guided_advanced_tt_access.Rmd |only inst/doc/guided_advanced_tt_access.html |only inst/doc/guided_advanced_tt_prune_funs.R |only inst/doc/guided_advanced_tt_prune_funs.Rmd |only inst/doc/guided_advanced_tt_prune_funs.html |only inst/doc/guided_advanced_tt_score_funs.R |only inst/doc/guided_advanced_tt_score_funs.Rmd |only inst/doc/guided_advanced_tt_score_funs.html |only inst/doc/guided_intermediate.R | 32 inst/doc/guided_intermediate.html | 3215 ++++----- inst/doc/guided_intermediate_afun_reqs.R | 408 - inst/doc/guided_intermediate_afun_reqs.html | 4417 ++++++------- inst/doc/guided_intermediate_split_reqs.R | 371 - inst/doc/guided_intermediate_split_reqs.Rmd | 1051 +-- inst/doc/guided_intermediate_split_reqs.html | 4485 ++++++------- inst/doc/guided_intermediate_translating_shells.R | 976 +- inst/doc/guided_intermediate_translating_shells.Rmd | 1980 +++--- inst/doc/guided_intermediate_translating_shells.html | 5228 +++++++--------- inst/doc/guided_intro_basics.R |only inst/doc/guided_intro_basics.Rmd |only inst/doc/guided_intro_basics.html |only inst/doc/guided_intro_nesting.R |only inst/doc/guided_intro_nesting.Rmd |only inst/doc/guided_intro_nesting.html |only inst/doc/introspecting_tables.R | 152 inst/doc/introspecting_tables.Rmd | 346 - inst/doc/introspecting_tables.html | 1316 +--- inst/doc/manual_table_construction.R | 48 inst/doc/manual_table_construction.html | 935 +- inst/doc/pathing.R | 376 - inst/doc/pathing.html | 2569 +++---- inst/doc/rtables.R | 312 inst/doc/rtables.Rmd | 808 +- inst/doc/rtables.html | 1521 ++-- inst/doc/sorting_pruning.R | 364 - inst/doc/sorting_pruning.Rmd | 1078 +-- inst/doc/sorting_pruning.html | 2509 +++---- inst/doc/split_functions.R | 386 - inst/doc/split_functions.Rmd | 958 +- inst/doc/split_functions.html | 1733 ++--- inst/doc/subsetting_tables.R | 226 inst/doc/subsetting_tables.Rmd | 548 - inst/doc/subsetting_tables.html | 1561 ++-- inst/doc/tabulation_concepts.R | 564 - inst/doc/tabulation_concepts.Rmd | 1224 +-- inst/doc/tabulation_concepts.html | 2309 +++---- inst/doc/tabulation_dplyr.R | 292 inst/doc/tabulation_dplyr.Rmd | 494 - inst/doc/tabulation_dplyr.html | 1376 ++-- inst/doc/title_footer.R | 282 inst/doc/title_footer.Rmd | 516 - inst/doc/title_footer.html | 1807 ++--- man/CellValue.Rd | 110 man/RefFootnote.Rd |only man/SplitValue.Rd |only man/Viewer.Rd | 96 man/add_colcounts.Rd | 84 man/add_combo_facet.Rd | 16 man/add_existing_table.Rd | 92 man/add_overall_col.Rd | 68 man/add_overall_level.Rd | 39 man/additional_fun_params.Rd | 101 man/analyze.Rd | 57 man/analyze_colvars.Rd | 259 man/append_topleft.Rd | 106 man/as_html.Rd | 152 man/basic_table.Rd | 218 man/brackets.Rd | 260 man/build_table.Rd | 246 man/c.RowsVerticalSection.Rd |only man/cell_values.Rd | 198 man/clear_imods.Rd | 70 man/coltree_structure.Rd | 58 man/compat_args.Rd | 78 man/constr_args.Rd | 258 man/custom_split_funs.Rd | 174 man/data.frame_export.Rd | 226 man/dimensions.Rd | 76 man/do_base_split.Rd | 106 man/drop_facet_levels.Rd | 12 man/facet_colcount.Rd | 184 man/find_degen_struct.Rd | 60 man/formatters_methods.Rd | 582 - man/gen_args.Rd | 252 man/get_anchor_df.Rd |only man/gfc.Rd | 136 man/in_rows.Rd | 174 man/insert_row_at_path.Rd | 104 man/insert_rrow.Rd | 120 man/int_methods.Rd | 247 man/label_at_path.Rd | 94 man/lyt_args.Rd | 22 man/make_col_row_df.Rd | 74 man/make_split_fun.Rd | 30 man/make_split_result.Rd | 19 man/matrix_form-VTableTree-method.Rd | 166 man/paginate.Rd | 472 - man/prune_table.Rd | 108 man/qtable_layout.Rd | 262 man/rbind.Rd | 152 man/rcell.Rd | 170 man/reexports.Rd | 92 man/ref_fnotes.Rd | 180 man/restrict_facets.Rd | 12 man/rheader.Rd | 84 man/rm_all_colcounts.Rd | 82 man/row_accessors.Rd | 107 man/row_paths_summary.Rd | 102 man/rowclasses.Rd | 208 man/rrow.Rd | 100 man/rrowl.Rd | 124 man/rtable.Rd | 268 man/rtables-package.Rd | 10 man/sanitize_table_struct.Rd | 92 man/score_funs.Rd | 54 man/section_div.Rd | 502 - man/sf_args.Rd | 60 man/sort_at_path.Rd | 322 man/split_cols_by.Rd | 336 - man/split_cols_by_multivar.Rd | 176 man/split_funcs.Rd | 370 - man/split_rows_by.Rd | 403 - man/split_rows_by_multivar.Rd | 217 man/splv_extra.Rd |only man/subset_cols.Rd | 266 man/summarize_row_groups.Rd | 218 man/tabclasses.Rd | 280 man/table_shell.Rd | 152 man/table_structure.Rd | 92 man/tostring.Rd | 184 man/trim_levels_in_facets.Rd | 14 man/trim_levels_to_map.Rd | 102 man/trim_prune_funs.Rd | 200 man/trim_rows.Rd | 104 man/ttap.Rd | 110 man/validate_table_struct.Rd | 106 man/value_expr.Rd |only man/value_formats.Rd | 88 man/varcuts.Rd | 557 - man/vil.Rd | 137 tests/testthat/test-accessors.R | 108 tests/testthat/test-as_html.R | 292 tests/testthat/test-binding.R | 604 - tests/testthat/test-colby_constructors.R | 14 tests/testthat/test-default_split_funs.R | 838 +- tests/testthat/test-deprecated.R | 184 tests/testthat/test-exporters.R | 14 tests/testthat/test-formatting.R | 36 tests/testthat/test-header-footer.R | 22 tests/testthat/test-indent-mod.R | 82 tests/testthat/test-lyt-tabulation.R | 52 tests/testthat/test-make-afun.R | 36 tests/testthat/test-matrix_form.R | 26 tests/testthat/test-nesting.R |only tests/testthat/test-pagination.R | 78 tests/testthat/test-printing.R | 1973 +++--- tests/testthat/test-regressions.R | 196 tests/testthat/test-result_data_frame.R | 1196 +-- tests/testthat/test-rowsverticalsection.R |only tests/testthat/test-sanitize-struct.R | 108 tests/testthat/test-sort-prune.R | 100 tests/testthat/test-tab_afun_cfun.R | 790 +- vignettes/advanced_usage.Rmd | 508 - vignettes/analysis_basics_a.png |only vignettes/ard_how_to.Rmd | 334 - vignettes/baseline.Rmd | 266 vignettes/clinical_trials.Rmd | 2259 +++--- vignettes/col_counts.Rmd | 466 - vignettes/custom_appearance.Rmd | 1132 +-- vignettes/example_analysis_coxreg.Rmd | 784 +- vignettes/exploratory_analysis.Rmd | 576 - vignettes/format_precedence.Rmd | 782 +- vignettes/guided_advanced.Rmd |only vignettes/guided_advanced_afuns.Rmd |only vignettes/guided_advanced_afuns_building_blocks.Rmd |only vignettes/guided_advanced_afuns_rowsverticalsection.Rmd |only vignettes/guided_advanced_afuns_spl_context.Rmd |only vignettes/guided_advanced_split_funs.Rmd |only vignettes/guided_advanced_split_funs_make_split_fun.Rmd |only vignettes/guided_advanced_split_funs_new_bbbs.Rmd |only vignettes/guided_advanced_split_funs_worked_ex.Rmd |only vignettes/guided_advanced_tt.Rmd |only vignettes/guided_advanced_tt_access.Rmd |only vignettes/guided_advanced_tt_prune_funs.Rmd |only vignettes/guided_advanced_tt_score_funs.Rmd |only vignettes/guided_intermediate_split_reqs.Rmd | 1051 +-- vignettes/guided_intermediate_translating_shells.Rmd | 1980 +++--- vignettes/guided_intro_basics.Rmd |only vignettes/guided_intro_nesting.Rmd |only vignettes/introspecting_tables.Rmd | 346 - vignettes/rtables.Rmd | 808 +- vignettes/sorting_pruning.Rmd | 1078 +-- vignettes/split_functions.Rmd | 958 +- vignettes/subsetting_tables.Rmd | 548 - vignettes/tabulation_concepts.Rmd | 1224 +-- vignettes/tabulation_dplyr.Rmd | 494 - vignettes/title_footer.Rmd | 516 - 287 files changed, 64817 insertions(+), 65832 deletions(-)
Title: External Control Borrowing for Rare Disease Trials
Description: Implements causal inference methods for incorporating external
control data into randomized controlled trials (RCTs) with longitudinal
outcomes. Provides an analysis module supporting weighting-based methods
such as inverse probability weighting (IPW) and augmented inverse
probability weighting (AIPW), difference-in-differences (DID), and
synthetic control approaches for borrowing external control information,
as well as a simulation module for generating trial and external control
data, evaluating estimator performance via Monte Carlo studies, and
conducting power analyses for sample size determination. Methods are
based on Zhou et al. (2024) <doi:10.1093/jrsssa/qnae075> and
Zhou et al. (2024) <doi:10.1080/10543406.2024.2330209>.
Author: Lei Shi [aut],
Matt Secrest [cre, aut] ,
Herbert Pang [aut],
Chen Chen [aut],
Jiawen Zhu [aut],
Genentech, Inc. [cph]
Maintainer: Matt Secrest <secrmatt@gmail.com>
Diff between rdborrow versions 0.0.4.1 dated 2026-09-24 and 0.0.4.2 dated 2026-10-01
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 5 +++++ inst/WORDLIST | 2 ++ inst/doc/OLE_analysis_workflow.html | 20 ++++++++++---------- inst/doc/OLE_simulation_workflow.html | 4 ++-- inst/doc/introduction.html | 4 ++-- inst/doc/primary_analysis_workflow.html | 4 ++-- inst/doc/primary_simulation_workflow.html | 4 ++-- tests/testthat/test-full_pipeline_did_ec_aipw.R | 2 +- tests/testthat/test-full_pipeline_did_ec_ipw.R | 2 +- tests/testthat/test-full_pipeline_ec_ipw.R | 5 ++++- 12 files changed, 45 insertions(+), 35 deletions(-)
Title: Maximum Likelihood Estimation and Related Tools
Description: Functions for Maximum Likelihood (ML) estimation, non-linear
optimization, and related tools. It includes a unified way to call
different optimizers, and classes and methods to handle the results from
the Maximum Likelihood viewpoint. It also includes a number of convenience
tools for testing and developing your own models.
Author: Ott Toomet [aut, cre],
Arne Henningsen [aut],
Spencer Graves [ctb],
Yves Croissant [ctb],
David Hugh-Jones [ctb],
Luca Scrucca [ctb]
Maintainer: Ott Toomet <otoomet@gmail.com>
Diff between maxLik versions 1.5-2.2 dated 2025-12-29 and 1.6-10 dated 2026-10-01
maxLik-1.5-2.2/maxLik/R/nObs.R |only maxLik-1.5-2.2/maxLik/R/tidyMethods.R |only maxLik-1.5-2.2/maxLik/man/nObs.Rd |only maxLik-1.5-2.2/maxLik/tests/finalHessian.R |only maxLik-1.5-2.2/maxLik/tests/finalHessian.Rout.save |only maxLik-1.5-2.2/maxLik/vignettes/probability-density.asy |only maxLik-1.6-10/maxLik/DESCRIPTION | 12 maxLik-1.6-10/maxLik/MD5 | 115 +++---- maxLik-1.6-10/maxLik/NAMESPACE | 11 maxLik-1.6-10/maxLik/NEWS | 33 ++ maxLik-1.6-10/maxLik/R/10-MaxControl_class.R | 8 maxLik-1.6-10/maxLik/R/25-addControlList.R | 23 + maxLik-1.6-10/maxLik/R/confint.maxLik.R | 4 maxLik-1.6-10/maxLik/R/glance.R |only maxLik-1.6-10/maxLik/R/maxBFGSR.R | 33 -- maxLik-1.6-10/maxLik/R/maxBFGSRCompute.R | 133 ++++----- maxLik-1.6-10/maxLik/R/maxNR.R | 3 maxLik-1.6-10/maxLik/R/maxNRCompute.R | 8 maxLik-1.6-10/maxLik/R/maxOptim.R | 8 maxLik-1.6-10/maxLik/R/maxSGA.R | 1 maxLik-1.6-10/maxLik/R/nobs.R |only maxLik-1.6-10/maxLik/R/print.maxLik.R | 9 maxLik-1.6-10/maxLik/R/print.maxim.R |only maxLik-1.6-10/maxLik/R/returnCode.R | 4 maxLik-1.6-10/maxLik/R/sumt.R | 29 + maxLik-1.6-10/maxLik/R/tidy.R |only maxLik-1.6-10/maxLik/R/vcov.maxLik.R | 10 maxLik-1.6-10/maxLik/R/zzz.R | 4 maxLik-1.6-10/maxLik/build/partial.rdb |binary maxLik-1.6-10/maxLik/build/vignette.rds |binary maxLik-1.6-10/maxLik/inst/CITATION | 29 + maxLik-1.6-10/maxLik/inst/doc/intro-to-maximum-likelihood.R | 72 ---- maxLik-1.6-10/maxLik/inst/doc/intro-to-maximum-likelihood.Rnw | 105 ++++--- maxLik-1.6-10/maxLik/inst/doc/intro-to-maximum-likelihood.pdf |binary maxLik-1.6-10/maxLik/inst/doc/stochastic-gradient-maxLik.R | 2 maxLik-1.6-10/maxLik/inst/doc/stochastic-gradient-maxLik.pdf |binary maxLik-1.6-10/maxLik/inst/doc/using-maxlik.R | 147 +--------- maxLik-1.6-10/maxLik/inst/doc/using-maxlik.Rnw | 40 +- maxLik-1.6-10/maxLik/inst/doc/using-maxlik.pdf |binary maxLik-1.6-10/maxLik/inst/tinytest/test-finalHessian.R |only maxLik-1.6-10/maxLik/inst/tinytest/test-maxControl.R | 7 maxLik-1.6-10/maxLik/inst/tinytest/test-methods.R | 45 ++- maxLik-1.6-10/maxLik/inst/tinytest/test-optimizers.R | 21 - maxLik-1.6-10/maxLik/inst/tinytest/test-parameters.R | 18 - maxLik-1.6-10/maxLik/man/hessian.Rd | 2 maxLik-1.6-10/maxLik/man/maxBFGS.Rd | 50 ++- maxLik-1.6-10/maxLik/man/maxLik-methods.Rd | 11 maxLik-1.6-10/maxLik/man/maxLik.Rd | 9 maxLik-1.6-10/maxLik/man/maxNR.Rd | 102 +++--- maxLik-1.6-10/maxLik/man/nobs.Rd |only maxLik-1.6-10/maxLik/man/returnCode.Rd | 24 + maxLik-1.6-10/maxLik/man/summary.maxim.Rd | 3 maxLik-1.6-10/maxLik/man/sumt.Rd | 19 - maxLik-1.6-10/maxLik/man/tidy.maxLik.Rd | 39 ++ maxLik-1.6-10/maxLik/man/vcov.maxLik.Rd | 4 maxLik-1.6-10/maxLik/tests/BFGSR.R | 23 - maxLik-1.6-10/maxLik/tests/BFGSR.Rout.save | 34 +- maxLik-1.6-10/maxLik/tests/constraints.R | 47 +-- maxLik-1.6-10/maxLik/tests/constraints.Rout.save | 90 +++--- maxLik-1.6-10/maxLik/tests/libs.R |only maxLik-1.6-10/maxLik/tests/numericGradient.R | 2 maxLik-1.6-10/maxLik/tests/numericGradient.Rout.save | 14 maxLik-1.6-10/maxLik/vignettes/intro-to-maximum-likelihood.Rnw | 105 ++++--- maxLik-1.6-10/maxLik/vignettes/probability-density.pdf |binary maxLik-1.6-10/maxLik/vignettes/using-maxlik.Rnw | 40 +- 65 files changed, 833 insertions(+), 719 deletions(-)
Title: Dendrochronology Program Library in R
Description: Perform tree-ring analyses such as detrending, chronology
building, and cross dating. Read and write standard file formats
used in dendrochronology.
Author: Andy Bunn [aut, cph, cre, trl],
Mikko Korpela [aut, cph, trl],
Franco Biondi [aut, cph],
Filipe Campelo [aut, cph],
Stefan Klesse [aut, cph],
Pierre Merian [aut, cph],
Fares Qeadan [aut, cph],
Christian Zang [aut, cph],
Allan Buras [ctb],
Alice Cecil [...truncated...]
Maintainer: Andy Bunn <bunna@wwu.edu>
Diff between dplR versions 1.7.9 dated 2026-05-21 and 1.8.0 dated 2026-10-01
dplR-1.7.9/dplR/man/csv2rwl.Rd |only dplR-1.8.0/dplR/ChangeLog | 1658 ++++++++++++++ dplR-1.8.0/dplR/DESCRIPTION | 15 dplR-1.8.0/dplR/MD5 | 239 +- dplR-1.8.0/dplR/NAMESPACE | 49 dplR-1.8.0/dplR/NEWS.md |only dplR-1.8.0/dplR/R/Extract.rwl.R |only dplR-1.8.0/dplR/R/as.bai.R |only dplR-1.8.0/dplR/R/as.rwi.R |only dplR-1.8.0/dplR/R/as.rwl.R | 9 dplR-1.8.0/dplR/R/bai.in.R | 13 dplR-1.8.0/dplR/R/bai.out.R | 12 dplR-1.8.0/dplR/R/caps.R | 10 dplR-1.8.0/dplR/R/ccf.series.rwl.R | 7 dplR-1.8.0/dplR/R/chron.R | 19 dplR-1.8.0/dplR/R/chron.ars.R | 25 dplR-1.8.0/dplR/R/chron.stabilized.R | 3 dplR-1.8.0/dplR/R/cms.R | 20 dplR-1.8.0/dplR/R/common.interval.R | 55 dplR-1.8.0/dplR/R/corr.rwl.seg.R | 75 dplR-1.8.0/dplR/R/corr.series.seg.R | 15 dplR-1.8.0/dplR/R/csv2rwl.R | 60 dplR-1.8.0/dplR/R/detrend.R | 34 dplR-1.8.0/dplR/R/detrend.series.R | 39 dplR-1.8.0/dplR/R/encoding.R |only dplR-1.8.0/dplR/R/helpers.R | 372 +++ dplR-1.8.0/dplR/R/i.detrend.R | 26 dplR-1.8.0/dplR/R/i.detrend.series.R | 13 dplR-1.8.0/dplR/R/insert.ring.R | 10 dplR-1.8.0/dplR/R/interseries.cor.R | 17 dplR-1.8.0/dplR/R/normalize.xdate.R | 36 dplR-1.8.0/dplR/R/normalize1.R | 29 dplR-1.8.0/dplR/R/plot.crs.R | 26 dplR-1.8.0/dplR/R/pointer.R | 4 dplR-1.8.0/dplR/R/rcs.R | 21 dplR-1.8.0/dplR/R/read.fh.R | 23 dplR-1.8.0/dplR/R/read.rwl.R | 196 + dplR-1.8.0/dplR/R/read.sheet.R |only dplR-1.8.0/dplR/R/read.tucson.R | 2033 +++++++++++++----- dplR-1.8.0/dplR/R/read.tucson.legacy.R |only dplR-1.8.0/dplR/R/rwi.image.R |only dplR-1.8.0/dplR/R/rwi.stats.running.R | 21 dplR-1.8.0/dplR/R/rwl.check.R |only dplR-1.8.0/dplR/R/rwl.report.R | 143 + dplR-1.8.0/dplR/R/rwl.stats.R | 1 dplR-1.8.0/dplR/R/seg.plot.R | 4 dplR-1.8.0/dplR/R/series.rwl.plot.R | 17 dplR-1.8.0/dplR/R/sgc.R | 20 dplR-1.8.0/dplR/R/spag.plot.R | 13 dplR-1.8.0/dplR/R/ssf.R | 10 dplR-1.8.0/dplR/R/sss.R | 2 dplR-1.8.0/dplR/R/strip.rwl.R | 8 dplR-1.8.0/dplR/R/summary.rwi.R |only dplR-1.8.0/dplR/R/window.rwl.R |only dplR-1.8.0/dplR/R/write.rwl.R | 8 dplR-1.8.0/dplR/R/write.sheet.R |only dplR-1.8.0/dplR/R/write.tucson.R | 145 + dplR-1.8.0/dplR/R/xdate.floater.R | 7 dplR-1.8.0/dplR/R/xdate.report.R |only dplR-1.8.0/dplR/R/xskel.ccf.plot.R | 6 dplR-1.8.0/dplR/R/xskel.plot.R | 10 dplR-1.8.0/dplR/R/zzz.R | 3 dplR-1.8.0/dplR/TODO | 18 dplR-1.8.0/dplR/build |only dplR-1.8.0/dplR/data/ca533.rda |binary dplR-1.8.0/dplR/data/co021.rda |binary dplR-1.8.0/dplR/data/nm046.rda |binary dplR-1.8.0/dplR/data/wa082.rda |binary dplR-1.8.0/dplR/inst/doc |only dplR-1.8.0/dplR/man/Extract.rwl.Rd |only dplR-1.8.0/dplR/man/as.bai.Rd |only dplR-1.8.0/dplR/man/as.rwi.Rd |only dplR-1.8.0/dplR/man/bai.in.Rd | 11 dplR-1.8.0/dplR/man/bai.out.Rd | 11 dplR-1.8.0/dplR/man/ca533.Rd | 15 dplR-1.8.0/dplR/man/caps.Rd | 36 dplR-1.8.0/dplR/man/ccf.series.rwl.Rd | 22 dplR-1.8.0/dplR/man/check.rwl.Rd |only dplR-1.8.0/dplR/man/chron.Rd | 8 dplR-1.8.0/dplR/man/chron.ars.Rd | 10 dplR-1.8.0/dplR/man/cms.Rd | 8 dplR-1.8.0/dplR/man/co021.Rd | 15 dplR-1.8.0/dplR/man/common.interval.Rd | 13 dplR-1.8.0/dplR/man/corr.rwl.seg.Rd | 153 + dplR-1.8.0/dplR/man/corr.series.seg.Rd | 22 dplR-1.8.0/dplR/man/detrend.Rd | 34 dplR-1.8.0/dplR/man/detrend.series.Rd | 17 dplR-1.8.0/dplR/man/gini.coef.Rd | 7 dplR-1.8.0/dplR/man/glk.Rd | 2 dplR-1.8.0/dplR/man/i.detrend.Rd | 13 dplR-1.8.0/dplR/man/i.detrend.series.Rd | 5 dplR-1.8.0/dplR/man/interseries.cor.Rd | 16 dplR-1.8.0/dplR/man/latexify.Rd | 2 dplR-1.8.0/dplR/man/nm046.Rd | 15 dplR-1.8.0/dplR/man/plot.crs.Rd | 8 dplR-1.8.0/dplR/man/rcs.Rd | 6 dplR-1.8.0/dplR/man/read.fh.Rd | 14 dplR-1.8.0/dplR/man/read.rwl.Rd | 36 dplR-1.8.0/dplR/man/read.sheet.Rd |only dplR-1.8.0/dplR/man/read.tucson.Rd | 200 + dplR-1.8.0/dplR/man/read.tucson.legacy.Rd |only dplR-1.8.0/dplR/man/rwi.stats.running.Rd | 23 dplR-1.8.0/dplR/man/rwl.check.Rd |only dplR-1.8.0/dplR/man/rwl.report.Rd | 22 dplR-1.8.0/dplR/man/series.rwl.plot.Rd | 16 dplR-1.8.0/dplR/man/sgc.Rd | 6 dplR-1.8.0/dplR/man/skel.plot.Rd | 2 dplR-1.8.0/dplR/man/spag.plot.Rd | 5 dplR-1.8.0/dplR/man/ssf.Rd | 2 dplR-1.8.0/dplR/man/treeMean.Rd | 12 dplR-1.8.0/dplR/man/wa082.Rd | 27 dplR-1.8.0/dplR/man/window.rwl.Rd |only dplR-1.8.0/dplR/man/write.rwl.Rd | 14 dplR-1.8.0/dplR/man/write.sheet.Rd |only dplR-1.8.0/dplR/man/write.tucson.Rd | 106 dplR-1.8.0/dplR/man/xdate.floater.Rd | 16 dplR-1.8.0/dplR/man/xdate.report.Rd |only dplR-1.8.0/dplR/man/xskel.ccf.plot.Rd | 33 dplR-1.8.0/dplR/man/xskel.plot.Rd | 33 dplR-1.8.0/dplR/tests/testthat/Rplots.pdf |only dplR-1.8.0/dplR/tests/testthat/test-Extract.rwl.R |only dplR-1.8.0/dplR/tests/testthat/test-bai.R |only dplR-1.8.0/dplR/tests/testthat/test-check.rwl.R |only dplR-1.8.0/dplR/tests/testthat/test-common.interval.R |only dplR-1.8.0/dplR/tests/testthat/test-corr.rwl.seg.R |only dplR-1.8.0/dplR/tests/testthat/test-difference.R |only dplR-1.8.0/dplR/tests/testthat/test-empty-series.R |only dplR-1.8.0/dplR/tests/testthat/test-encoding.R |only dplR-1.8.0/dplR/tests/testthat/test-insert.ring.R |only dplR-1.8.0/dplR/tests/testthat/test-io.R | 69 dplR-1.8.0/dplR/tests/testthat/test-normalize.R |only dplR-1.8.0/dplR/tests/testthat/test-read.sheet.R |only dplR-1.8.0/dplR/tests/testthat/test-read.tucson.R |only dplR-1.8.0/dplR/tests/testthat/test-rwi.R |only dplR-1.8.0/dplR/tests/testthat/test-rwl.check.R |only dplR-1.8.0/dplR/tests/testthat/test-sniff.rwl.R |only dplR-1.8.0/dplR/tests/testthat/test-write.sheet.R |only dplR-1.8.0/dplR/tests/testthat/test-write.tucson.R |only dplR-1.8.0/dplR/tests/testthat/test-xdate.report.R |only dplR-1.8.0/dplR/vignettes |only 140 files changed, 5600 insertions(+), 1084 deletions(-)
Title: Base Functions for the 'DescToolsX' Ecosystem
Description: Provides the low level utilities on which the 'DescToolsX'
ecosystem is built. Covered are data manipulation and reshaping,
predicates for data inspection and validation, vector and string
operations, handling of labels and metadata, and routines from
number theory and combinatorics. All functions share a common
naming and argument scheme and are implemented as S3 generics
wherever several input types are meaningful, with performance
critical parts written in C++. The package is self contained and
can be used on its own, independently of the higher level packages
of the suite.
Author: Andri Signorell [aut, cre] ,
R Core Team [ctb],
Hans W. Borchers [ctb],
Daniel Chessel [ctb],
Nicholas Cooper [ctb],
Stephane Dray [ctb],
Martin Elff [ctb],
Michael Friendly [ctb],
Friedrich Leisch [ctb],
Thomas Lumley [ctb],
Martin Maechler [ctb],
N [...truncated...]
Maintainer: Andri Signorell <andri@signorell.net>
Diff between bedrock versions 0.1.9 dated 2026-09-29 and 0.1.16 dated 2026-10-01
bedrock-0.1.16/bedrock/DESCRIPTION | 6 bedrock-0.1.16/bedrock/MD5 | 47 bedrock-0.1.16/bedrock/NAMESPACE | 5 bedrock-0.1.16/bedrock/NEWS.md | 11 bedrock-0.1.16/bedrock/R/applySides.R | 17 bedrock-0.1.16/bedrock/R/concepts.R |only bedrock-0.1.16/bedrock/R/resolveContingency.R | 22 bedrock-0.1.16/bedrock/R/resolveFormula.R | 1114 +++++----- bedrock-0.1.16/bedrock/R/strX.R | 54 bedrock-0.1.16/bedrock/R/zzz.R | 2 bedrock-0.1.16/bedrock/man/applySides.Rd | 9 bedrock-0.1.16/bedrock/man/concepts.Rd |only bedrock-0.1.16/bedrock/man/resolveContingency.Rd | 15 bedrock-0.1.16/bedrock/man/resolveFormula.Rd | 145 + bedrock-0.1.16/bedrock/man/strX.Rd | 5 bedrock-0.1.16/bedrock/tests/testthat/test-concepts.R |only bedrock-0.1.16/bedrock/tests/testthat/test-precision.R | 5 bedrock-0.1.16/bedrock/tests/testthat/test-printCharMatrix.R | 22 bedrock-0.1.16/bedrock/tests/testthat/test-recycle.R | 140 - bedrock-0.1.16/bedrock/tests/testthat/test-resolveFormula.R | 987 ++++++-- bedrock-0.1.16/bedrock/tests/testthat/test-set-remove-keep-attr.R | 76 bedrock-0.1.16/bedrock/tests/testthat/test-strX.R | 82 bedrock-0.1.16/bedrock/tests/testthat/test-vRot-vShift.R | 16 bedrock-0.1.9/bedrock/R/getConcepts.R |only bedrock-0.1.9/bedrock/tests/testthat/test-getConcepts.R |only bedrock-0.1.9/bedrock/tests/testthat/test-recyle.R |only bedrock-0.1.9/bedrock/tests/testthat/test-set-and-remove-attributes.R |only bedrock-0.1.9/bedrock/tests/testthat/test-vRot.R |only bedrock-0.1.9/bedrock/tests/testthat/test-vShift.R |only 29 files changed, 1691 insertions(+), 1089 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-02-13 1.1.2