Thu, 24 Mar 2011

Package games updated to version 1.0-1 with previous version 1.0-0 dated 2011-03-04

Title: Statistical Estimation of Game-Theoretic Models
Description: Provides estimation and analysis functions for strategic statistical models.
Author: Curtis S. Signorino and Brenton Kenkel
Maintainer: Brenton Kenkel

Diff between games versions 1.0-0 dated 2011-03-04 and 1.0-1 dated 2011-03-24

 DESCRIPTION       |   12 ++++++------
 NAMESPACE         |    2 +-
 NEWS              |    6 ++++++
 R/latexTable.r    |   10 +++++++++-
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Package dti updated to version 0.9-5 with previous version 0.9-4 dated 2011-03-08

Title: Analysis of diffusion weighted imaging (DWI) data
Description: Diffusion Weighted Imaging (DWI) is a Magnetic Resonance Imaging modality, that measures diffusion of water in tissues like the human brain. The package contains R-functions to process diffusion-weighted data. The functionality includes diffusion tensor imaging (DTI), structural adaptive smoothing in in case of (DTI) (K. Tabelow, J. Polzehl, V. Spokoiny, and H.U. Voss, Diffusion Tensor Imaging: Structural Adaptive Smoothing, Neuroimage 39(4), 1763-1773 (2008)), modeling for high angular resolution diffusion weighted imaging (HARDI) using Q-ball-reconstruction and tensor mixture models and a stremaline fiber tracking for tensor and tensor mixture models. The package provides functionality to manipulate and visualize results in 2D and 3D.
Author: Karsten Tabelow Joerg Polzehl
Maintainer: Karsten Tabelow

Diff between dti versions 0.9-4 dated 2011-03-08 and 0.9-5 dated 2011-03-24

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Package dcemriS4 updated to version 0.43 with previous version 0.41 dated 2010-12-23

Title: A Package for Medical Image Analysis (S4 implementation)
Description: A collection of routines and documentation that allows one to perform voxel-wise quantitative analysis of dynamic contrast-enhanced or diffusion-weighted MRI data.
Author: Brandon Whitcher and Volker Schmid, with contributions from Andrew Thornton
Maintainer: Brandon Whitcher

Diff between dcemriS4 versions 0.41 dated 2010-12-23 and 0.43 dated 2011-03-24

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New package TwoPhaseInd with initial version 1.0.0
Package: TwoPhaseInd
Type: Package
Title: Two-Phase Independence
Version: 1.0.0
Date: 2011-03-23
Author: James Dai
Maintainer: Ting-Yuan Liu
Description: Semiparametric Estimation Exploiting Covariate Independence in Two-Phase Randomized Trials
License: GPL (>= 2)
LazyLoad: no
Packaged: 2011-03-23 21:49:36 UTC; ting
Repository: CRAN
Date/Publication: 2011-03-24 20:30:16

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New package ROAuth with initial version 0.1.1
Package: ROAuth
Title: R interface to liboauth
Description: This package provides an interface to the liboauth library, allowing users to authenticate via OAuth to the server of their choice.
Version: 0.1.1
Author: Jeff Gentry
Maintainer: Jeff Gentry
Depends: R (>= 2.12.0), methods
Imports: methods
License: Artistic-2.0
SystemRequirements: liboauth (>= 0.9.4) liboauth.sourceforge.net and libcurl http://curl.haxx.se
Packaged: 2011-03-23 22:58:44 UTC; gentrj
Repository: CRAN
Date/Publication: 2011-03-24 20:19:47

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Package IBrokers updated to version 0.9-1 with previous version 0.3-2 dated 2011-01-03

Title: R API to Interactive Brokers Trader Workstation
Description: Provides native R access to Interactive Brokers Trader Workstation API.
Author: Jeffrey A. Ryan
Maintainer: Jeffrey A. Ryan

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Package vcdExtra updated to version 0.5-2 with previous version 0.5-1 dated 2010-11-29

Title: vcd additions
Description: Provides additional data sets, methods and documentation to complement the vcd package for Visualizing Categorical Data and the gnm package for Generalized Nonlinear Models. In particular, vcdExtra extends mosaic, assoc and sieve plots from vcd to handle glm() and gnm() models and adds a 3D version in mosaic3d.
Author: Michael Friendly with Heather Turner, David Firth, Achim Zeileis and Duncan Murdoch
Maintainer: Michael Friendly

Diff between vcdExtra versions 0.5-1 dated 2010-11-29 and 0.5-2 dated 2011-03-24

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Package rpart.plot updated to version 1.2-0 with previous version 1.1-1 dated 2011-03-09

Title: Plot rpart models. An enhanced version of plot.rpart.
Description: Plot rpart models. Extends plot.rpart and text.rpart in the rpart package.
Author: Stephen Milborrow, borrowing heavily from the rpart package by Terry M. Therneau and Beth Atkinson, and the R port of that package by Brian Ripley.
Maintainer: Stephen Milborrow

Diff between rpart.plot versions 1.1-1 dated 2011-03-09 and 1.2-0 dated 2011-03-24

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Package mratios updated to version 1.3.15 with previous version 1.3.14 dated 2010-10-23

Title: Inferences for ratios of coefficients in the general linear model
Description: With this package, it is possible to perform (simultaneous) inferences for ratios of linear combinations of coefficients in the general linear model. In particular, tests and confidence interval estimations for ratios of treatment means in the normal one-way layout and confidence interval estimations like in (multiple) slope ratio and parallel line assays can be carried out. Moreover, it is possible to calculate the sample sizes required in comparisons with a control based on relative margins. For the simple two-sample problem, functions for a t-test for ratio-formatted hypotheses and the corresponding Fieller-type confidence interval are provided assuming homogeneous or heterogeneous group variances.
Author: Gemechis Dilba Djira, Mario Hasler, Daniel Gerhard, Frank Schaarschmidt
Maintainer: Frank Schaarschmidt

Diff between mratios versions 1.3.14 dated 2010-10-23 and 1.3.15 dated 2011-03-24

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New package insideRODE with initial version 1.0
Package: insideRODE
Type: Package
Title: insideRODE build in function with ODE solver and C/FORTRAN interface to nlme
Version: 1.0
Date: 2011-03-22
Author: YUZHUO PAN, XIAOYU YAN
Maintainer: YUZHUO PAN
Depends: R (>= 2.12.0), deSolve, nlme, lattice
Description: insideRODE build in function with ODE solver and C/FORTRAN interface to nlme, including nlmLSODA, nlmODE, nlmVODE,nlmLSODE for general ODE; cfLSODA,cfLSODE, cfODE, cfVODE solver for C/FORTRAN based ODE.V1.2 CAN READ DLLNAME BY DLL loaded.
License: LGPL (> 2.0)
LazyLoad: yes
Packaged: 2011-03-24 02:56:56 UTC; Administrator
Repository: CRAN
Date/Publication: 2011-03-24 16:56:31

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Package gogarch updated to version 0.7-0 with previous version 0.6-9 dated 2009-05-04

Title: Generalized Orthogonal GARCH (GO-GARCH) models
Description: Implementation of the GO-GARCH model class
Author: Bernhard Pfaff
Maintainer: Bernhard Pfaff

Diff between gogarch versions 0.6-9 dated 2009-05-04 and 0.7-0 dated 2011-03-24

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Package genoPlotR updated to version 0.6 with previous version 0.5.4 dated 2010-09-22

Title: Plot publication-grade gene and genome maps
Description: genoPlotR draws gene or genome maps and comparisons between these, in a publication-grade manner. Starting from simple, common files, it will draw postscript or pdf files that can be sent as such to journals
Author: Lionel Guy
Maintainer: Lionel Guy

Diff between genoPlotR versions 0.5.4 dated 2010-09-22 and 0.6 dated 2011-03-24

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Package earth updated to version 2.5-0 with previous version 2.4-8 dated 2011-03-05

Title: Multivariate Adaptive Regression Spline Models
Description: Build regression models using the techniques in Friedman's papers "Fast MARS" and "Multivariate Adaptive Regression Splines". (The term "MARS" is copyrighted and thus not used in the name of the package.)
Author: Stephen Milborrow derived from mda:mars by Trevor Hastie and Rob Tibshirani.
Maintainer: Stephen Milborrow

Diff between earth versions 2.4-8 dated 2011-03-05 and 2.5-0 dated 2011-03-24

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Package depmixS4 updated to version 1.0-3 with previous version 1.0-2 dated 2011-02-18

Title: Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
Description: Fit latent (hidden) Markov models on mixed categorical and continuous (timeseries) data, otherwise known as dependent mixture models
Author: Ingmar Visser , Maarten Speekenbrink
Maintainer: Ingmar Visser

Diff between depmixS4 versions 1.0-2 dated 2011-02-18 and 1.0-3 dated 2011-03-24

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Package clinfun updated to version 0.9.6 with previous version 0.9.5 dated 2011-03-09

Title: Clinical Trial Design and Data Analysis Functions
Description: Utilities to make your clinical collaborations easier if not fun.
Author: Venkatraman E. Seshan
Maintainer: Venkatraman E. Seshan

Diff between clinfun versions 0.9.5 dated 2011-03-09 and 0.9.6 dated 2011-03-24

 CHANGES           |    5 +++++
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Package RecordLinkage updated to version 0.3-1 with previous version 0.3-0 dated 2011-03-15

Title: Record Linkage in R
Description: Provides functions for linking and deduplicating data sets. Methods based on a stochastical approach are implemented as well as classification algorithms from the machine learning domain.
Author: Andreas Borg , Murat Sariyar
Maintainer: Murat Sariyar

Diff between RecordLinkage versions 0.3-0 dated 2011-03-15 and 0.3-1 dated 2011-03-24

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Package EquiNorm updated to version 2.0 with previous version 1.1 dated 2011-03-17

Title: Normalize expression data using equivalently expressed genes
Description: Normalize oligonucleotide gene expression data using equivalently expressed genes in experiments comparing two groups of samples (for example, case-control samples), as outlined in L-X Qin and JM Satagopan (2009).
Author: Li-Xuan Qin , Jaya M. Satagopan
Maintainer: Brian Denton

Diff between EquiNorm versions 1.1 dated 2011-03-17 and 2.0 dated 2011-03-24

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Package CollocInfer updated to version 0.1.3 with previous version 0.1.2 dated 2010-10-01

Title: Collocation Inference for Dynamic Systems
Description: These functions implement collocation-inference for continuous-time and discrete-time stochastic processes. They provide model-based smoothing, gradient-matching, generalized profiling and forwards prediction error methods.
Author: Giles Hooker , Luo Xiao , James Ramsay
Maintainer: Giles Hooker

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New package unknownR with initial version 0.1
Package: unknownR
Version: 0.1
Title: You didn't know you didn't know?
Author: Matthew Dowle
Maintainer: Matthew Dowle
Depends: tcltk
Description: Utility to quickly find useful functions in R that you didn't know you didn't know.
License: GPL
URL: http://unknownr.r-forge.r-project.org/
Packaged: 2011-03-24 00:54:50 UTC; mdowle
Repository: CRAN
Date/Publication: 2011-03-24 08:02:08

More information about unknownR at CRAN
Permanent link

Package sos4R updated to version 0.2-01 with previous version 0.2 dated 2011-03-20

Title: An R client for the OGC Sensor Observation Service
Description: sos4R is a client for Sensor Observation Services (SOS) as specified by the Open Geospatial Consortium (OGC). It allows users to retrieve metadata from SOS web services and to interactively create requests for observation data based on the available sensors, phenomena, observations et cetera using thematical, temporal and spatial filtering.
Author: Daniel Nuest
Maintainer: Daniel Nuest

Diff between sos4R versions 0.2 dated 2011-03-20 and 0.2-01 dated 2011-03-24

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 sos4R-0.2-01/sos4R/R/Defaults.R                                                                      |    6 
 sos4R-0.2-01/sos4R/R/Generic-methods.R                                                               |    6 
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 sos4R-0.2-01/sos4R/man/SML.Rd                                                                        |   10 
 sos4R-0.2-01/sos4R/man/parse.Rd                                                                      |    2 
 sos4R-0.2-01/sos4R/man/sos4R-package.Rd                                                              |    4 
 sos4R-0.2-01/sos4R/man/sosCreate.Rd                                                                  |   16 
 sos4R-0.2-01/sos4R/sandbox/edc-entwicklerforum.R                                                     |    1 
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Package rainbow updated to version 2.3.4 with previous version 2.3.3 dated 2011-03-23

Title: Rainbow plots, bagplots and boxplots for functional data
Description: Functions and datasets for functional data display and outlier detection.
Author: Han Lin Shang and Rob J Hyndman
Maintainer: Han Lin Shang

Diff between rainbow versions 2.3.3 dated 2011-03-23 and 2.3.4 dated 2011-03-24

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Package maptools updated to version 0.8-4 with previous version 0.8-3 dated 2011-03-21

Title: Tools for reading and handling spatial objects
Description: Set of tools for manipulating and reading geographic data, in particular ESRI shapefiles; C code used from shapelib. It includes binary access to GSHHS shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as PBSmapping, spatstat, maps, RArcInfo, Stata tmap, WinBUGS, Mondrian, and others.
Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer J. Pebesma, Eric Archer, Adrian Baddeley, Hans-Jörg Bibiko, Stéphane Dray, David Forrest, Michael Friendly, Patrick Giraudoux, Duncan Golicher, Virgilio Gómez Rubio, Patrick Hausmann, Karl Ove Hufthammer, Thomas Jagger, Sebastian P. Luque, Don MacQueen, Andrew Niccolai, Tom Short and Ben Stabler
Maintainer: Roger Bivand

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Package gamair updated to version 0.0-7 with previous version 0.0-6 dated 2010-04-27

Title: Data for "GAMs: An Introduction with R"
Description: Data sets and scripts used in the book "Generalized Additive Models: An Introduction with R", Wood (2006) CRC.
Author: Simon Wood
Maintainer: Simon Wood

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Package changepoint updated to version 0.4 with previous version 0.3 dated 2011-01-25

Title: Contains funcions that run various single and multiple changepoint methods
Description: Implements various mainstream and specialised changepoint methods for finding single and multiple changepoints within data. Many popular non-parametric and frequentist methods are included. The cpt.mean, cpt.var, cpt.meanvar functions should be your first point of call.
Author: Rebecca Killick , Idris A. Eckley
Maintainer: Rebecca Killick

Diff between changepoint versions 0.3 dated 2011-01-25 and 0.4 dated 2011-03-24

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Package bpca updated to version 1.0-4 with previous version 1.0.3 dated 2009-06-24

Title: Biplot of Multivariate Data Based on Principal Components Analysis
Description: Implements biplot (2d and 3d) of multivariate data based on principal components analysis and diagnostic tools of the quality of the reduction.
Author: Jose Claudio Faria & Clarice Garcia Borges Demetrio
Maintainer: Jose Claudio Faria

Diff between bpca versions 1.0.3 dated 2009-06-24 and 1.0-4 dated 2011-03-24

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Package amer updated to version 0.6.9 with previous version 0.6.7 dated 2010-06-09

Title: Additive mixed models with lme4
Description: Fitting generalized additive mixed models based on the mixed model algorithm of lme4
Author: Fabian Scheipl
Maintainer: Fabian Scheipl

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 amer-0.6.9/amer/NAMESPACE                                |    2 
 amer-0.6.9/amer/R/amer-class.R                           |    4 
 amer-0.6.9/amer/R/amer.R                                 |    8 -
 amer-0.6.9/amer/R/amerSetup.R                            |    3 
 amer-0.6.9/amer/R/expand.call.R                          |    1 
 amer-0.6.9/amer/R/getF.R                                 |    5 
 amer-0.6.9/amer/R/reparameterizeDesign.R                 |    2 
 amer-0.6.9/amer/R/tp.R                                   |    2 
 amer-0.6.9/amer/R/tpU.R                                  |    4 
 amer-0.6.9/amer/TODO                                     |   11 +-
 amer-0.6.9/amer/inst/doc/GAMMsUsingLME4.Rnw              |    1 
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 amer-0.6.9/amer/tests/optionsTests.R                     |   78 ++++++++++-----
 39 files changed, 104 insertions(+), 53 deletions(-)

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Package alabama updated to version 2011.3-1 with previous version 2010.10-1 dated 2010-10-15

Title: Constrained nonlinear optimization
Description: Augmented Lagrangian Adaptive Barrier Minimization Algorithm for optimizing smooth nonlinear objective functions with constraints. Linear or nonlinear equality and inequality constraints are allowed.
Author: Ravi Varadhan (with contributions from Gabor Grothendieck)
Maintainer: Ravi Varadhan

Diff between alabama versions 2010.10-1 dated 2010-10-15 and 2011.3-1 dated 2011-03-24

 DESCRIPTION |    8 ++++----
 NEWS        |    6 ++++++
 R/auglag.R  |   12 +++++++++---
 3 files changed, 19 insertions(+), 7 deletions(-)

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Package RSurvey updated to version 0.6-1 with previous version 0.6-0 dated 2011-02-22

Title: Analysis of Spatially Distributed Data
Description: This package is a processing program for spatially distributed data. It features graphing tools, query building, and polygon clipping. A graphical user interface is provided.
Author: Jason C. Fisher
Maintainer: Jason C. Fisher

Diff between RSurvey versions 0.6-0 dated 2011-02-22 and 0.6-1 dated 2011-03-24

 DESCRIPTION                     |   11 
 R/AddAxis.R                     |  154 +-
 R/Autocrop.R                    |  250 ++--
 R/AutocropPolygon.R             |  392 +++----
 R/BuildPackage.R                |   92 -
 R/CheckEntry.R                  |   92 -
 R/CutoutPolygon.R               |  132 +-
 R/Data.R                        |  228 ++--
 R/EditFunction.R                |  842 ++++++++--------
 R/EditLimits.R                  |  994 +++++++++---------
 R/EditTimeFormat.R              |  544 +++++-----
 R/EvalFunction.R                |   74 -
 R/GetFile.R                     |  256 ++--
 R/ImportData.R                  | 1037 ++++++++++---------
 R/LoadPackages.R                |   60 -
 R/ManageData.R                  | 1374 +++++++++++++-------------
 R/ManagePolygons.R              |  418 +++----
 R/OpenRSurvey.R                 | 2094 ++++++++++++++++++++--------------------
 R/PlotSurface2d.R               |  722 ++++++-------
 R/PlotSurface3d.R               |  358 +++---
 R/PlotTimeSeries.R              |  268 ++---
 R/ProcessData.R                 |  392 +++----
 R/ReadData.R                    |  325 ++----
 R/Rename.R                      |  230 ++--
 R/RestoreSession.R              |   94 -
 R/SetConfiguration.R            |  588 +++++------
 R/SetPolygonLimits.R            |  248 ++--
 R/SetPreferences.R              |  326 +++---
 R/SummarizeData.R               |  266 ++---
 R/ViewData.R                    |only
 R/WriteFile.R                   |  295 ++---
 data/project.rda                |binary
 inst/extdata/DataExample.csv    |  106 +-
 inst/extdata/DataExample.txt    |  112 +-
 inst/extdata/DataExample.txt.gz |binary
 inst/extdata/DataExample.xlsx   |binary
 inst/extdata/Polygon1.ply       |   72 -
 inst/extdata/Polygon2.ply       |   28 
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 man/AddAxis.Rd                  |  104 -
 man/Autocrop.Rd                 |   92 -
 man/AutocropPolygon.Rd          |  106 +-
 man/BuildPackage.Rd             |   54 -
 man/CheckEntry.Rd               |  100 -
 man/CutoutPolygon.Rd            |  112 +-
 man/Data.Rd                     |  136 +-
 man/EditFunction.Rd             |  100 -
 man/EditLimits.Rd               |   98 -
 man/EditTimeFormat.Rd           |   70 -
 man/EvalFunction.Rd             |  108 +-
 man/GetFile.Rd                  |  106 +-
 man/ImportData.Rd               |  104 +
 man/LoadPackages.Rd             |   48 
 man/ManageData.Rd               |  138 +-
 man/ManagePolygons.Rd           |  118 +-
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 man/PlotTimeSeries.Rd           |  114 +-
 man/ProcessData.Rd              |  135 +-
 man/RSurvey-package.Rd          |  112 +-
 man/ReadData.Rd                 |  164 +--
 man/Rename.Rd                   |   68 -
 man/RestoreSession.Rd           |   82 -
 man/SetConfiguration.Rd         |  144 +-
 man/SetPolygonLimits.Rd         |   82 -
 man/SetPreferences.Rd           |   86 -
 man/SummarizeData.Rd            |  112 +-
 man/ViewData.Rd                 |only
 man/WriteFile.Rd                |   86 -
 70 files changed, 8427 insertions(+), 8314 deletions(-)

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Package R.utils updated to version 1.7.2 with previous version 1.7.0 dated 2011-03-14

Title: Various programming utilities
Description: This package provides utility classes and methods useful when programming in R and developing R packages.
Author: Henrik Bengtsson
Maintainer: Henrik Bengtsson

Diff between R.utils versions 1.7.0 dated 2011-03-14 and 1.7.2 dated 2011-03-24

 R.utils-1.7.0/R.utils/man/Sys.setenv.Rd |only
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 R.utils-1.7.2/R.utils/R/deviceUtils.R   |   40 +++++++++++++++++++++++---------
 R.utils-1.7.2/R.utils/R/env.R           |    2 -
 R.utils-1.7.2/R.utils/inst/NEWS         |   16 ++++++++++++
 R.utils-1.7.2/R.utils/man/devDone.Rd    |    4 +--
 R.utils-1.7.2/R.utils/man/devEval.Rd    |    2 -
 R.utils-1.7.2/R.utils/man/env.Rd        |    2 -
 10 files changed, 56 insertions(+), 20 deletions(-)

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Package EvalEst updated to version 2011.3-1 with previous version 2010.02-1 dated 2010-04-21

Title: Dynamic Systems Estimation - extensions
Description: EvalEst provides functions for evalating (time series) model estimation methods. These facilitate monte carlo experiments of repeated simulations and estimations. The package also provides methods for looking at the distribution of the results from these experiments, including model roots (which are an equivalence class invariant).
Author: Paul Gilbert
Maintainer: Paul Gilbert

Diff between EvalEst versions 2010.02-1 dated 2010-04-21 and 2011.3-1 dated 2011-03-24

 EvalEst-2010.02-1/EvalEst/inst/doc/EvalEst-guide.Stex         |only
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 EvalEst-2011.3-1/EvalEst/DESCRIPTION                          |   10 ++++++----
 EvalEst-2011.3-1/EvalEst/NAMESPACE                            |    2 +-
 EvalEst-2011.3-1/EvalEst/NEWS                                 |    5 +++++
 EvalEst-2011.3-1/EvalEst/R/EvalEst.R                          |    6 +++---
 EvalEst-2011.3-1/EvalEst/inst/doc/Guide.Stex                  |only
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 EvalEst-2011.3-1/EvalEst/man/TobsMonteCarloSimulations.Rd     |only
 10 files changed, 15 insertions(+), 8 deletions(-)

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New package DALY with initial version 1.0
Package: DALY
Type: Package
Title: DALY Calculator - A GUI for stochastic DALY calculation in R
Version: 1.0
Date: 2011-03-23
Author: Brecht Devleesschauwer, Arie Havelaar, Juanita Haagsma, Nicolas Praet, and Niko Speybroeck
Maintainer: Brecht Devleesschauwer
Depends: R (>= 2.12.0), tcltk
Description: The DALY Calculator is a free, open-source Graphical User Interface (GUI) for stochastic disability-adjusted life year (DALY) calculation.
License: GPL (>= 2)
URL: http://www.r-project.org, http://studwww.ugent.be/~bdvleess/DALYcalculator
LazyLoad: yes
Packaged: 2011-03-23 13:36:52 UTC; UGent
Repository: CRAN
Date/Publication: 2011-03-24 07:08:39

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