Thu, 11 Dec 2014

New package RecordLinkage with initial version 0.4-6
Package: RecordLinkage
Version: 0.4-6
Title: Record Linkage in R
Author: Andreas Borg , Murat Sariyar
Maintainer: Andreas Borg
Contact: reclinkmainz@googlemail.com
Description: Provides functions for linking and de-duplicating data sets. Methods based on a stochastic approach are implemented as well as classification algorithms from the machine learning domain.
License: GPL (>= 2)
Depends: R (>= 2.10.0), DBI, RSQLite(>= 0.9-1), ff, ffbase
Imports: e1071, rpart, ada, ipred, stats, evd, methods, data.table (>= 1.7.8), nnet, xtable
Suggests: RUnit
LinkingTo: RSQLite
URL: https://r-forge.r-project.org/projects/recordlinkage/, http://journal.r-project.org/archive/2010-2/RJournal_2010-2_Sariyar+Borg.pdf
Collate: register-S3-classes.r RLBigData-classes.r RLResult-class.r accessor-methods.r evt.r classify.r classifySupv-methods.r genSamples.r strcmp.r compare.r getPairs.r summary.r em-methods.r internals.r em.r mygllm.r epilink-methods.r phonetics.r onAttach.r getPairs-methods.r serialization.r tools.r stochastic.r
Packaged: 2014-12-11 09:26:14 UTC; rforge
Repository: CRAN
Repository/R-Forge/Project: recordlinkage
Repository/R-Forge/Revision: 437
Repository/R-Forge/DateTimeStamp: 2014-12-11 09:20:46
Date/Publication: 2014-12-11 19:37:43
NeedsCompilation: yes

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Package io updated to version 0.2 with previous version 0.1 dated 2014-06-06

Title: A Unified Framework for Input-Output Operations in R
Description: One function to read files. One function to write files. One function to direct plots to screen or file. Automatic file format inference and directory structure creation.
Author: David J. H. Shih
Maintainer: David J. H. Shih

Diff between io versions 0.1 dated 2014-06-06 and 0.2 dated 2014-12-11

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New package EffectTreat with initial version 0.1-1
Package: EffectTreat
Type: Package
Title: Prediction of Therapeutic Success
Version: 0.1-1
Date: 2014-12-11
Author: Wim Van der Elst, Ariel Alonso & Geert Molenberghs
Maintainer: Wim Van der Elst
Description: In personalized medicine, one wants to know, for a given patient and his or her outcome for a predictor (pre-treatment variable), how likely it is that a treatment will be more beneficial than an alternative treatment. This package allows for the quantification of the predictive causal association(i.e., the association between the predictor variable and the individual causal effect of the treatment) and related metrics.
Depends:
License: GPL (>= 2)
BugReports: Wim Van der Elst
Repository: CRAN
Packaged: 2014-12-11 15:59:18 UTC; wimvde
NeedsCompilation: no
Date/Publication: 2014-12-11 19:32:48

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Package actuar updated to version 1.1-7 with previous version 1.1-6 dated 2013-01-13

Title: Actuarial functions
Description: Additional actuarial science functionality, mostly in the fields of loss distributions, risk theory (including ruin theory), simulation of compound hierarchical models and credibility theory. The package also features 17 probability laws commonly used in insurance, mostly heavy tailed distributions.
Author: Vincent Goulet, Sébastien Auclair, Christophe Dutang, Xavier Milhaud, Tommy Ouellet, Louis-Philippe Pouliot, Mathieu Pigeon
Maintainer: Vincent Goulet

Diff between actuar versions 1.1-6 dated 2013-01-13 and 1.1-7 dated 2014-12-11

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Package BoolNet updated to version 2.0.2 with previous version 2.0.1 dated 2014-08-26

Title: Generation, reconstruction, simulation and analysis of synchronous, asynchronous, and probabilistic Boolean networks
Description: Provides methods to reconstruct and generate synchronous, asynchronous, and probabilistic Boolean networks, and to analyze and visualize attractors in Boolean networks
Author: Christoph Müssel, Martin Hopfensitz, Dao Zhou, Hans Kestler
Maintainer: Hans Kestler

Diff between BoolNet versions 2.0.1 dated 2014-08-26 and 2.0.2 dated 2014-12-11

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Package stab updated to version 0.1.9 with previous version 0.1.8 dated 2013-12-30

Title: Data Analysis for Drug Stability
Description: Data analysis of drug stability for shelf-life estimation based on ICH Q1E guideline with single-factor analysis for single-batch or multiple-batch.
Author: Hsin-ya Lee, Yung-jin Lee
Maintainer: Yung-jin Lee

Diff between stab versions 0.1.8 dated 2013-12-30 and 0.1.9 dated 2014-12-11

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Package rpf updated to version 0.44 with previous version 0.43 dated 2014-11-13

Title: Response Probability Functions
Description: The purpose of this package is to factor out logic and math common to Item Factor Analysis fitting, diagnostics, and analysis. It is envisioned as core support code suitable for more specialized IRT packages to build upon. Complete access to optimized C functions are made available with R_RegisterCCallable.
Author: Joshua Pritikin [cre, aut], Jonathan Weeks [ctb], Li Cai [ctb], Carrie Houts [ctb], Phil Chalmers [ctb]
Maintainer: Joshua Pritikin

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Package PrevMap updated to version 1.1.3 with previous version 1.1.2 dated 2014-12-09

Title: Geostatistical Modelling of Spatially Referenced Prevalence Data
Description: It provides functions for both likelihood-based and Bayesian analysis of spatially referenced prevalence data. 'PrevMap' is also an extension of the 'geoR' package which should be installed first together with the 'maxLik', 'raster' and 'pdist' packages.
Author: Emanuele Giorgi, Peter J. Diggle
Maintainer: Emanuele Giorgi

Diff between PrevMap versions 1.1.2 dated 2014-12-09 and 1.1.3 dated 2014-12-11

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Package doBy updated to version 4.5-13 with previous version 4.5-12 dated 2014-11-13

Title: Groupwise statistics, LSmeans, linear contrasts, utilities
Description: doBy originally contained facilities to 'do' something to data stratified 'by' some variables. doBy contains a variety of utilities including: 1) Facilities for groupwise computations of summary statistics and other facilities for working with grouped data. 2) LSmeans (least-squares means), general linear contrasts. 3) Miscellaneous other utilities.
Author: Sren Hjsgaard and Ulrich Halekoh with contributions from Jim Robison-Cox, Kevin Wright, Alessandro A. Leidi and others.
Maintainer: Sren Hjsgaard

Diff between doBy versions 4.5-12 dated 2014-11-13 and 4.5-13 dated 2014-12-11

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Package c060 updated to version 0.2-4 with previous version 0.2-3 dated 2014-01-22

Title: Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
Description: c060 provides additional functions to perform stability selection, model validation and parameter tuning for glmnet models
Author: Martin Sill, Thomas Hielscher, Manuela Zucknick, Natalia Becker.
Maintainer: Martin Sill

Diff between c060 versions 0.2-3 dated 2014-01-22 and 0.2-4 dated 2014-12-11

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Package TIMP updated to version 1.12.1 with previous version 1.12.0 dated 2014-12-02

Title: Fitting Separable Nonlinear Models in Spectroscopy and Microscopy
Description: TIMP is a problem-solving environment (PSE) for fitting separable nonlinear models to measurements arising in physics and chemistry experiments, and has been extensively applied to time-resolved spectroscopy and FLIM-FRET data.
Author: Katharine M. Mullen, Joris J. Snellenburg, Sergey P. Laptenok, David Nicolaides, Ivo H.M. van Stokkum
Maintainer: Joris J. Snellenburg

Diff between TIMP versions 1.12.0 dated 2014-12-02 and 1.12.1 dated 2014-12-11

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Package RProtoBuf updated to version 0.4.2 with previous version 0.4.1 dated 2014-03-25

Title: R Interface to the Protocol Buffers API
Description: Protocol Buffers are a way of encoding structured data in an efficient yet extensible format. Google uses Protocol Buffers for almost all of its internal RPC protocols and file formats. Additional documentation is available in the arXiv.org preprint "RProtoBuf: Efficient Cross-Language Data Serialization in R" by Eddelbuettel, Stokely, and Ooms (2014) http://arxiv.org/abs/1401.7372
Author: Romain Francois, Dirk Eddelbuettel, Murray Stokely and Jeroen Ooms
Maintainer: Dirk Eddelbuettel

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Package RJaCGH updated to version 2.0.3 with previous version 2.0.2 dated 2011-10-10

Title: Reversible Jump MCMC for the analysis of CGH arrays.
Description: Bayesian analysis of CGH microarrays fitting Hidden Markov Chain models. The selection of the number of states is made via their posterior probability computed by Reversible Jump Markov Chain Monte Carlo Methods. Also returns probabilistic common regions for gains/losses.
Author: Oscar Rueda and Ramon Diaz-Uriarte . zlib from Jean-loup Gailly and Mark Adler; see README. Function "getHostname.System" from package R.utils by Henrik Bengtsson.
Maintainer: Oscar Rueda

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 RJaCGH-2.0.3/RJaCGH/src/nnhl.c            |    6 ++++
 34 files changed, 24 insertions(+), 41 deletions(-)

More information about RJaCGH at CRAN
Permanent link

New package clusterCrit with initial version 1.2.4
Package: clusterCrit
Type: Package
Title: Clustering Indices
Version: 1.2.4
Date: 2014-12-11
Author: Bernard Desgraupes (University of Paris Ouest - Lab Modal'X)
Maintainer: Bernard Desgraupes
Description: compute clustering validation indices
License: GPL (>= 2)
URL: http:www.r-project.org
Collate: main.R zzz.R
Encoding: latin1
Suggests: RUnit, rbenchmark
Packaged: 2014-12-11 10:15:06 UTC; bernardo
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2014-12-11 13:20:18

More information about clusterCrit at CRAN
Permanent link

Package tergm updated to version 3.2.3 with previous version 3.1.4 dated 2014-01-22

Title: Fit, Simulate and Diagnose Models for Network Evolution based on Exponential-Family Random Graph Models
Description: An integrated set of extensions to the `ergm` package to analyze and simulate network evolution based on exponential-family random graph models (ERGM). "tergm" is a part of the "statnet" suite of packages for network analysis.
Author: Pavel N. Krivitsky [aut, cre], Mark S. Handcock [aut, ths], David R. Hunter [ctb], Steven M. Goodreau [ctb, ths], Martina Morris [ctb, ths], Nicole Bohme Carnegie [ctb], Carter T. Butts [ctb], Ayn Leslie-Cook [ctb], Skye Bender-deMoll [ctb], Li Wang [ctb], Kirk Li [ctb]
Maintainer: Pavel N. Krivitsky

Diff between tergm versions 3.1.4 dated 2014-01-22 and 3.2.3 dated 2014-12-11

 DESCRIPTION                              |   22 ++--
 LICENSE                                  |    2 
 MD5                                      |  153 ++++++++++++++++---------------
 NAMESPACE                                |    2 
 R/InitConstraint.R                       |    2 
 R/InitErgmTerm.duration.R                |   15 ++-
 R/InitMHP.DynMLE.R                       |    2 
 R/InitMHP.DynMLE.blockdiag.R             |    2 
 R/InitMHP.DynMoME.R                      |    7 +
 R/coef.stergm.R                          |    2 
 R/combine.networks.R                     |    2 
 R/control.logLik.stergm.R                |    2 
 R/control.simulate.stergm.R              |    2 
 R/control.stergm.R                       |    4 
 R/ergm.godfather.R                       |   13 +-
 R/gof.stergm.R                           |    2 
 R/impute.network.list.R                  |   85 +++++++++++++++++
 R/is.lasttoggle.R                        |only
 R/logLik.stergm.R                        |    2 
 R/mcmc.diagnostics.stergm.R              |    2 
 R/print.stergm.R                         |    2 
 R/simulate.stergm.R                      |   61 +++++++++---
 R/stergm.CMLE.R                          |    2 
 R/stergm.EGMME.GD.R                      |   21 +++-
 R/stergm.EGMME.R                         |   33 +++++-
 R/stergm.EGMME.SA.R                      |   49 +++++++--
 R/stergm.EGMME.initialfit.R              |    7 -
 R/stergm.R                               |   20 ++--
 R/stergm.getMCMCsample.R                 |   21 ++--
 R/stergm.utils.R                         |   82 ++++++++--------
 R/summary.statistics.networkDynamic.R    |   24 +++-
 R/summary.stergm.R                       |    2 
 R/zzz.R                                  |    5 -
 build                                    |only
 inst/NEWS.Rd                             |  100 +++++++++++++++++++-
 inst/doc                                 |only
 man/coef.stergm.Rd                       |    2 
 man/control.simulate.stergm.Rd           |    2 
 man/control.stergm.Rd                    |   19 ++-
 man/ergm-constraints.Rd                  |    2 
 man/ergm-terms.Rd                        |    5 -
 man/gof.stergm.Rd                        |    2 
 man/impute.network.list.Rd               |    2 
 man/logLik.stergm.Rd                     |    2 
 man/mcmc.diagnostics.stergm.Rd           |    2 
 man/print.stergm.Rd                      |    2 
 man/simulate.stergm.Rd                   |   25 +++--
 man/stergm.Rd                            |   44 +++++---
 man/summary.statistics.networkDynamic.Rd |   18 ++-
 man/tergm-internal.Rd                    |    4 
 man/tergm-package.Rd                     |    2 
 man/tergm.godfather.Rd                   |    4 
 src/DynSA.c                              |    5 -
 src/DynSA.h                              |    2 
 src/MCMCDyn.c                            |    8 +
 src/MCMCDyn.h                            |    2 
 src/MHproposals_DynMLE.c                 |   11 +-
 src/MHproposals_DynMLE.h                 |    2 
 src/MHproposals_DynMLE_block.c           |    8 +
 src/MHproposals_DynMLE_block.h           |    2 
 src/MHproposals_DynMoME.c                |   76 +++++++++++++--
 src/MHproposals_DynMoME.h                |    7 -
 src/changestats_duration.c               |    2 
 src/changestats_duration.h               |    2 
 src/godfather.c                          |    5 -
 src/godfather.h                          |    2 
 src/include_stubs.c                      |    2 
 tests/degree.mean.age.R                  |    2 
 tests/dynamic_EGMME.R                    |    2 
 tests/dynamic_EGMME.simple.R             |    9 +
 tests/dynamic_MLE.R                      |    2 
 tests/dynamic_MLE_2.R                    |    2 
 tests/dynamic_MLE_blockdiag.R            |    2 
 tests/examples.R                         |    9 +
 tests/sim_gf_sum.R                       |    3 
 tests/simulate_networkDynamic.R          |   98 +++++++++++++++++++
 tests/tergm_offset_tests.R               |only
 tests/tergm_parallel.R                   |only
 vignettes                                |only
 79 files changed, 852 insertions(+), 302 deletions(-)

More information about tergm at CRAN
Permanent link

Package phreeqc updated to version 1.0-9102 with previous version 1.0-8877 dated 2014-07-29

Title: R interface to Geochemical Modeling Software
Description: PHREEQC (Version 3) is a geochemical modeling program developed by the US Geological Survey that is designed to perform a wide variety of aqueous geochemical calculations, including speciation, batch-reaction, one-dimensional reactive-transport, and inverse geochemical calculations.
Author: S.R. Charlton, D.L. Parkhurst, and C.A.J. Appelo, with contributions from D. Gillespie for Chipmunk BASIC and S.D. Cohen, A.C. Hindmarsh, R. Serban, D. Shumaker, and A.G. Taylor for CVODE/SUNDIALS
Maintainer: S.R. Charlton

Diff between phreeqc versions 1.0-8877 dated 2014-07-29 and 1.0-9102 dated 2014-12-11

 DESCRIPTION                         |   18 +-
 MD5                                 |  226 ++++++++++++++++++------------------
 NAMESPACE                           |    2 
 R/phreeqc.R                         |    6 
 data/databases.rda                  |binary
 data/examples.rda                   |binary
 man/Amm.dat.Rd                      |   18 +-
 man/ex1.Rd                          |   32 ++---
 man/ex10.Rd                         |   44 +++----
 man/ex11.Rd                         |   42 +++---
 man/ex12.Rd                         |   58 ++++-----
 man/ex13.Rd                         |   41 +++---
 man/ex14.Rd                         |   51 ++++----
 man/ex15.Rd                         |   46 +++----
 man/ex15.dat.Rd                     |   15 +-
 man/ex16.Rd                         |   52 ++++----
 man/ex17.Rd                         |   51 ++++----
 man/ex18.Rd                         |   71 ++++++-----
 man/ex19.Rd                         |   37 +++--
 man/ex2.Rd                          |   28 ++--
 man/ex20.Rd                         |   56 ++++----
 man/ex21.Rd                         |   51 ++++----
 man/ex22.Rd                         |   45 +++----
 man/ex3.Rd                          |   50 ++++---
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 man/ex5.Rd                          |   40 +++---
 man/ex6.Rd                          |   35 ++---
 man/ex7.Rd                          |   60 +++++----
 man/ex8.Rd                          |   37 +++--
 man/ex9.Rd                          |   61 +++++----
 man/iso.dat.Rd                      |   17 +-
 man/llnl.dat.Rd                     |   16 +-
 man/minteq.dat.Rd                   |   13 --
 man/minteq.v4.dat.Rd                |   13 --
 man/phrAccumulateLine.Rd            |   11 -
 man/phrClearAccumulatedLines.Rd     |   10 -
 man/phrGetAccumulatedLines.Rd       |    5 
 man/phrGetComponentList.Rd          |    4 
 man/phrGetDumpFileName.Rd           |   16 +-
 man/phrGetDumpFileOn.Rd             |   11 -
 man/phrGetDumpStrings.Rd            |   15 +-
 man/phrGetDumpStringsOn.Rd          |   11 -
 man/phrGetErrorFileName.Rd          |   17 +-
 man/phrGetErrorFileOn.Rd            |   11 -
 man/phrGetErrorStrings.Rd           |   31 ++--
 man/phrGetErrorStringsOn.Rd         |   11 -
 man/phrGetLogFileName.Rd            |   14 +-
 man/phrGetLogFileOn.Rd              |   11 -
 man/phrGetLogStrings.Rd             |   11 -
 man/phrGetLogStringsOn.Rd           |   11 -
 man/phrGetOutputFileName.Rd         |   14 +-
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 man/phrGetOutputStrings.Rd          |   11 -
 man/phrGetOutputStringsOn.Rd        |   11 -
 man/phrGetSelectedOutput.Rd         |   29 ++--
 man/phrGetSelectedOutputFileName.Rd |   14 +-
 man/phrGetWarningStrings.Rd         |   13 +-
 man/phrLoadDatabase.Rd              |    6 
 man/phrLoadDatabaseString.Rd        |    8 -
 man/phrRunAccumulated.Rd            |   24 ++-
 man/phrRunFile.Rd                   |    5 
 man/phrRunString.Rd                 |   17 +-
 man/phrSetDumpFileName.Rd           |   18 +-
 man/phrSetDumpFileOn.Rd             |   19 +--
 man/phrSetDumpStringsOn.Rd          |   21 +--
 man/phrSetErrorFileName.Rd          |   16 +-
 man/phrSetErrorFileOn.Rd            |   22 +--
 man/phrSetErrorStringsOn.Rd         |   24 ++-
 man/phrSetLogFileName.Rd            |   20 +--
 man/phrSetLogFileOn.Rd              |   23 +--
 man/phrSetLogStringsOn.Rd           |   21 +--
 man/phrSetOutputFileName.Rd         |   19 +--
 man/phrSetOutputFileOn.Rd           |   21 +--
 man/phrSetOutputStringsOn.Rd        |   21 +--
 man/phrSetSelectedOutputFileName.Rd |   19 +--
 man/phrSetSelectedOutputFileOn.Rd   |   21 +--
 man/phreeqc-package.Rd              |   25 ++-
 man/phreeqc.dat.Rd                  |   16 +-
 man/pitzer.dat.Rd                   |   16 +-
 man/sit.dat.Rd                      |   16 +-
 man/wateq4f.dat.Rd                  |   14 +-
 src/CSelectedOutput.cpp             |    1 
 src/IPhreeqc.cpp                    |    8 +
 src/IPhreeqc.h                      |    2 
 src/IPhreeqcLib.cpp                 |    4 
 src/IPhreeqchpp.h                   |    2 
 src/phreeqcpp/GasPhase.cpp          |   10 +
 src/phreeqcpp/PBasic.cpp            |   77 +++++++++---
 src/phreeqcpp/PBasic.h              |    3 
 src/phreeqcpp/PHRQ_io.cpp           |    5 
 src/phreeqcpp/Parser.cpp            |   24 ++-
 src/phreeqcpp/Phreeqc.cpp           |    2 
 src/phreeqcpp/Phreeqc.h             |   10 +
 src/phreeqcpp/ReadClass.cpp         |   45 +++----
 src/phreeqcpp/Solution.cpp          |    8 +
 src/phreeqcpp/System.cpp            |    2 
 src/phreeqcpp/UserPunch.cpp         |    8 -
 src/phreeqcpp/basicsubs.cpp         |   31 ++++
 src/phreeqcpp/cl1.cpp               |   54 --------
 src/phreeqcpp/gases.cpp             |   18 +-
 src/phreeqcpp/inverse.cpp           |   12 +
 src/phreeqcpp/isotopes.cpp          |   67 ++++++----
 src/phreeqcpp/mainsubs.cpp          |    9 -
 src/phreeqcpp/parse.cpp             |   13 +-
 src/phreeqcpp/phqalloc.cpp          |    5 
 src/phreeqcpp/prep.cpp              |   40 ++++--
 src/phreeqcpp/print.cpp             |    3 
 src/phreeqcpp/read.cpp              |  100 ++++++++++++---
 src/phreeqcpp/sit.cpp               |    3 
 src/phreeqcpp/spread.cpp            |   52 ++++++--
 src/phreeqcpp/step.cpp              |   55 ++++----
 src/phreeqcpp/structures.cpp        |   91 ++++++++++++--
 src/phreeqcpp/tidy.cpp              |    2 
 src/phreeqcpp/utilities.cpp         |   10 +
 114 files changed, 1617 insertions(+), 1279 deletions(-)

More information about phreeqc at CRAN
Permanent link

Package ergm updated to version 3.2.3 with previous version 3.1.3 dated 2014-07-19

Title: Fit, Simulate and Diagnose Exponential-Family Models for Networks
Description: An integrated set of tools to analyze and simulate networks based on exponential-family random graph models (ERGM). "ergm" is a part of the "statnet" suite of packages for network analysis.
Author: Mark S. Handcock [aut], David R. Hunter [aut], Carter T. Butts [aut], Steven M. Goodreau [aut], Pavel N. Krivitsky [aut, cre], Martina Morris [aut], Li Wang [ctb], Kirk Li [ctb]
Maintainer: Pavel N. Krivitsky

Diff between ergm versions 3.1.3 dated 2014-07-19 and 3.2.3 dated 2014-12-11

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 ergm-3.2.3/ergm/MD5                                     |  486 +++----
 ergm-3.2.3/ergm/NAMESPACE                               |    3 
 ergm-3.2.3/ergm/R/InitConstraint.R                      |   75 +
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 ergm-3.2.3/ergm/R/InitErgmTerm.R                        |   42 
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 ergm-3.2.3/ergm/R/InitErgmTermcondegmple.R              |    2 
 ergm-3.2.3/ergm/R/InitMHP.R                             |   40 
 ergm-3.2.3/ergm/R/InitMHP.blockdiag.R                   |    2 
 ergm-3.2.3/ergm/R/InitReferences.R                      |    7 
 ergm-3.2.3/ergm/R/InitWtErgmTerm.R                      |    2 
 ergm-3.2.3/ergm/R/InitWtMHP.R                           |    8 
 ergm-3.2.3/ergm/R/MHproposal.R                          |    3 
 ergm-3.2.3/ergm/R/WtReferences.R                        |    2 
 ergm-3.2.3/ergm/R/anova.ergm.R                          |    2 
 ergm-3.2.3/ergm/R/anova.ergmlist.R                      |    2 
 ergm-3.2.3/ergm/R/approx.hotelling.diff.test.R          |  252 ++-
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Package rcrossref updated to version 0.2.1 with previous version 0.2.0 dated 2014-11-29

Title: R Client for Various CrossRef APIs
Description: R client for various CrossRef APIs, including metadata search with their old and search APIs, get citations in various formats (including bibtex, citeproc-json, rdf-xml, etc.), convert DOIs to PMIDs, and vice versa, get citations for DOIs, and get links to full text of articles when available.
Author: Carl Boettiger [aut], Ted Hart [aut], Scott Chamberlain [aut, cre], Karthik Ram [aut]
Maintainer: Scott Chamberlain

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Package optparse updated to version 1.3.0 with previous version 1.2.0 dated 2014-04-04

Title: Command line option parser.
Description: A command line parser inspired by Python's 'optparse' library to be used with Rscript to write "#!" shebang scripts that accept short and long flag/options.
Author: Trevor L Davis. Some documentation and examples ported from Allen Day's getopt package. Some documentation from the optparse Python module by the Python Software Foundation. Contributions from Steve Lianoglou, Jim Nikelski, Kirill Müller, and Peter Humburg.
Maintainer: Trevor L Davis

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Package metacom updated to version 1.4.2 with previous version 1.3 dated 2013-11-13

Title: Analysis of the 'Elements of Metacommunity Structure'
Description: Functions to analyze coherence, boundary clumping, and turnover following the pattern-based metacommunity analysis of Leibold and Mikkelson 2002
Author: person("Tad", "Dallas", role = c("aut", "cre"), email = "tdallas@uga.edu")
Maintainer: Tad Dallas

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New package medflex with initial version 0.4.0
Package: medflex
Title: Flexible Mediation Analysis using Natural Effect Models
Version: 0.4.0
Date: 2014-12-10
Authors@R: c( person("Johan", "Steen", email = "johan.steen@gmail.com", role = c("aut", "cre")), person("Tom", "Loeys", email = "tom.loeys@ugent.be", role = "aut"), person("Beatrijs", "Moerkerke", email = "beatrijs.moerkerke@ugent.be", role = "aut"), person("Stijn", "Vansteelandt", email = "stijn.vansteelandt@ugent.be", role = "aut"), person("Joris", "Meys", email = "joris.meys@ugent.be", comment = "technical support", role = "ctb"), person("Theis", "Lange", email = "thlan@sund.ku.dk", comment = "valuable suggestions", role = "ctb"))
Description: medflex allows to run flexible mediation analyses using natural effect models as described in Lange, Vansteelandt and Bekaert (2012), Vansteelandt, Bekaert and Lange (2012) and Loeys, Moerkerke, De Smet, Buysse, Steen and Vansteelandt (2013).
Depends: R (>= 3.1.2), multcomp (>= 1.3-6)
License: GPL-2
LazyData: true
Imports: boot (>= 1.3-8)
Suggests: arm (>= 1.7-05), car (>= 2.0-21), gam (>= 1.09.1), glmnet (>= 1.9-8), Matrix (>= 1.1-4), rpart (>= 4.1-8), SuperLearner (>= 2.0-15), VGAM (>= 0.9-5)
Packaged: 2014-12-10 23:05:29 UTC; johansteen
Author: Johan Steen [aut, cre], Tom Loeys [aut], Beatrijs Moerkerke [aut], Stijn Vansteelandt [aut], Joris Meys [ctb] (technical support), Theis Lange [ctb] (valuable suggestions)
Maintainer: Johan Steen
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2014-12-11 08:02:18

More information about medflex at CRAN
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Package enigma updated to version 0.1.1 with previous version 0.1.0 dated 2014-10-16

Title: R Client for the Enigma API
Description: Enigma (https://enigma.io) holds many public datasets from governments, companies, universities, and organizations. Enigma provides an API for data, metadata, and statistics on each of the datasets. enigma is an R client to interact with the Enigma API, including getting the data and metadata for datasets in Enigma, as well as collecting statistics on datasets. In addition, you can download a gzipped csv file of a dataset if you want the whole dataset. An API key from Enigma is required to use enigma.
Author: Scott Chamberlain [aut, cre]
Maintainer: Scott Chamberlain

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Package choroplethr updated to version 2.1.1 with previous version 2.1.0 dated 2014-12-03

Title: Simplify the Creation of Choropleth Maps in R
Description: Choropleths are thematic maps where geographic regions, such as states, are colored according to some metric, such as the number of people who live in that state. choroplethr simplifies this process by 1. Providing ready-made functions for creating choropleths of common maps. 2. Providing API connections to interesting data sources for making choropleths. 3. Providing a framework for creating choropleths from arbitrary shapefiles. Please see the vignettes for more details.
Author: Ari Lamstein [cre, aut], Brian P Johnson [ctb, frontend animation code]
Maintainer: Ari Lamstein

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 choroplethr-2.1.1/choroplethr/man/Admin1Choropleth.Rd                |    2 
 choroplethr-2.1.1/choroplethr/man/CountryChoropleth.Rd               |    2 
 choroplethr-2.1.1/choroplethr/man/CountyChoropleth.Rd                |    2 
 choroplethr-2.1.1/choroplethr/man/CountyZoomChoropleth.Rd            |    2 
 choroplethr-2.1.1/choroplethr/man/StateChoropleth.Rd                 |    2 
 choroplethr-2.1.1/choroplethr/man/USAChoropleth.Rd                   |    2 
 choroplethr-2.1.1/choroplethr/man/ZipMap.Rd                          |    2 
 choroplethr-2.1.1/choroplethr/man/choroplethr_wdi.Rd                 |    2 
 choroplethr-2.1.1/choroplethr/vignettes/f-mapping-us-census-data.Rmd |    2 
 choroplethr-2.1.1/choroplethr/vignettes/g-world-bank-data.Rmd        |    2 
 35 files changed, 132 insertions(+), 85 deletions(-)

More information about choroplethr at CRAN
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