Title: Estimation of the Structural Topic Model
Description: The Structural Topic Model (STM) allows researchers
to estimate topic models with document-level covariates.
The package also includes tools for model selection, visualization,
and estimation of topic-covariate regressions.
Author: Margaret Roberts [aut, cre],
Brandon Stewart [aut, cre],
Dustin Tingley [aut, cre],
Kenneth Benoit [ctb]
Maintainer: Brandon Stewart <bms4@princeton.edu>
Diff between stm versions 1.1.3 dated 2016-01-14 and 1.2.1 dated 2017-03-06
stm-1.1.3/stm/R/checkFactors.R |only stm-1.1.3/stm/R/dmr.R |only stm-1.1.3/stm/R/parseFormulas.R |only stm-1.1.3/stm/man/checkBeta.rd |only stm-1.1.3/stm/man/heldout.Rd |only stm-1.2.1/stm/DESCRIPTION | 22 - stm-1.2.1/stm/LICENSE | 2 stm-1.2.1/stm/MD5 | 227 ++++++----- stm-1.2.1/stm/NAMESPACE | 150 +++++-- stm-1.2.1/stm/R/RcppExports.R | 2 stm-1.2.1/stm/R/STMfunctions.R | 175 +++++++- stm-1.2.1/stm/R/STMinit.R | 33 + stm-1.2.1/stm/R/STMlncpp.R | 115 +++++ stm-1.2.1/stm/R/STMmnreg.R | 2 stm-1.2.1/stm/R/STMmu.R | 19 stm-1.2.1/stm/R/checkBeta.R | 32 + stm-1.2.1/stm/R/cloud.R | 39 + stm-1.2.1/stm/R/convertCorpus.R | 50 ++ stm-1.2.1/stm/R/estimateEffect.R | 184 +++++++++ stm-1.2.1/stm/R/exclusivity.R | 42 +- stm-1.2.1/stm/R/findThoughts.R | 170 +++++++- stm-1.2.1/stm/R/findTopic.R | 21 + stm-1.2.1/stm/R/fitNewDocuments.R |only stm-1.2.1/stm/R/heldout.R | 49 ++ stm-1.2.1/stm/R/labelTopics.R | 57 ++ stm-1.2.1/stm/R/makeDesignMatrix.R |only stm-1.2.1/stm/R/manyTopics.R | 100 ++++- stm-1.2.1/stm/R/multiSTM.R | 311 +++++++++++++++ stm-1.2.1/stm/R/permute.R | 117 +++++ stm-1.2.1/stm/R/plot.STM.R | 89 ++++ stm-1.2.1/stm/R/plot.estimateEffect.R | 134 ++++++ stm-1.2.1/stm/R/plot.searchK.R | 36 + stm-1.2.1/stm/R/plotModels.R | 35 + stm-1.2.1/stm/R/plotQuote.R | 33 + stm-1.2.1/stm/R/plotRemoved.R | 28 + stm-1.2.1/stm/R/plotTopicLoess.R | 26 + stm-1.2.1/stm/R/plottingutilfns.R | 6 stm-1.2.1/stm/R/prepDocuments.R | 73 +++ stm-1.2.1/stm/R/produce_cmatrix.R | 31 - stm-1.2.1/stm/R/readCorpus.R | 66 +++ stm-1.2.1/stm/R/residuals.R | 56 ++ stm-1.2.1/stm/R/s.R | 54 ++ stm-1.2.1/stm/R/sageLabels.R | 32 + stm-1.2.1/stm/R/searchK.R | 66 +++ stm-1.2.1/stm/R/selectModel.R | 96 ++++ stm-1.2.1/stm/R/semanticCoherence.R | 69 ++- stm-1.2.1/stm/R/spectral.R | 191 +++++---- stm-1.2.1/stm/R/stm-package.R |only stm-1.2.1/stm/R/stm.R | 486 +++++++++++++++++++++++- stm-1.2.1/stm/R/stm.control.R | 10 stm-1.2.1/stm/R/summary.STM.R | 15 stm-1.2.1/stm/R/textProcessor.R | 145 ++++++- stm-1.2.1/stm/R/thetaPosterior.R | 73 +++ stm-1.2.1/stm/R/toLDAvis.R | 49 ++ stm-1.2.1/stm/R/topicCorr.R | 112 +++++ stm-1.2.1/stm/R/topicLasso.R | 82 +++- stm-1.2.1/stm/R/topicQuality.R | 36 + stm-1.2.1/stm/R/writeLdac.R | 38 + stm-1.2.1/stm/R/zzz.R | 4 stm-1.2.1/stm/build/vignette.rds |binary stm-1.2.1/stm/data/gadarian.RData |binary stm-1.2.1/stm/data/gadarianFit.RData |binary stm-1.2.1/stm/data/poliblog5k.RData |binary stm-1.2.1/stm/inst/NEWS.Rd | 45 ++ stm-1.2.1/stm/inst/doc/stmVignette.R | 91 ++-- stm-1.2.1/stm/inst/doc/stmVignette.Rnw | 167 ++++---- stm-1.2.1/stm/inst/doc/stmVignette.pdf |binary stm-1.2.1/stm/man/calcfrex.Rd |only stm-1.2.1/stm/man/calclift.Rd |only stm-1.2.1/stm/man/calcscore.Rd |only stm-1.2.1/stm/man/checkBeta.Rd |only stm-1.2.1/stm/man/checkResiduals.Rd | 73 ++- stm-1.2.1/stm/man/cloud.Rd | 80 ++-- stm-1.2.1/stm/man/convertCorpus.Rd | 72 ++- stm-1.2.1/stm/man/estimateEffect.Rd | 177 +++++--- stm-1.2.1/stm/man/exclusivity.Rd |only stm-1.2.1/stm/man/findThoughts.Rd | 103 +++-- stm-1.2.1/stm/man/findTopic.Rd | 49 +- stm-1.2.1/stm/man/fitNewDocuments.Rd |only stm-1.2.1/stm/man/gadarian.Rd | 56 +- stm-1.2.1/stm/man/js.estimate.Rd |only stm-1.2.1/stm/man/labelTopics.Rd | 89 ++-- stm-1.2.1/stm/man/make.dt.Rd |only stm-1.2.1/stm/man/make.heldout.Rd |only stm-1.2.1/stm/man/makeDesignMatrix.Rd |only stm-1.2.1/stm/man/manyTopics.Rd | 196 ++++----- stm-1.2.1/stm/man/multiSTM.Rd | 235 +++++++---- stm-1.2.1/stm/man/optimizeDocument.Rd |only stm-1.2.1/stm/man/permutationTest.Rd | 123 +++--- stm-1.2.1/stm/man/plot.MultimodDiagnostic.Rd | 152 +++++-- stm-1.2.1/stm/man/plot.STM.Rd | 175 ++++---- stm-1.2.1/stm/man/plot.STMpermute.Rd | 75 +-- stm-1.2.1/stm/man/plot.estimateEffect.Rd | 295 ++++++-------- stm-1.2.1/stm/man/plot.searchK.Rd | 28 - stm-1.2.1/stm/man/plot.topicCorr.Rd | 84 ++-- stm-1.2.1/stm/man/plotModels.Rd | 81 +--- stm-1.2.1/stm/man/plotQuote.Rd | 82 +--- stm-1.2.1/stm/man/plotRemoved.Rd | 54 +- stm-1.2.1/stm/man/plotTopicLoess.Rd | 72 +-- stm-1.2.1/stm/man/poliblog5k.Rd | 63 ++- stm-1.2.1/stm/man/prepDocuments.Rd | 116 +++-- stm-1.2.1/stm/man/readCorpus.Rd | 102 +++-- stm-1.2.1/stm/man/rmvnorm.Rd |only stm-1.2.1/stm/man/s.Rd | 40 +- stm-1.2.1/stm/man/sageLabels.Rd | 76 +-- stm-1.2.1/stm/man/searchK.Rd | 107 ++--- stm-1.2.1/stm/man/selectModel.Rd | 218 ++++------ stm-1.2.1/stm/man/semanticCoherence.Rd |only stm-1.2.1/stm/man/stm-package.Rd | 80 +--- stm-1.2.1/stm/man/stm.Rd | 537 ++++++++++++++++++--------- stm-1.2.1/stm/man/summary.STM.Rd | 26 - stm-1.2.1/stm/man/summary.estimateEffect.Rd |only stm-1.2.1/stm/man/textProcessor.Rd | 200 ++++++---- stm-1.2.1/stm/man/thetaPosterior.Rd | 91 ++-- stm-1.2.1/stm/man/toLDAvis.Rd | 91 ++-- stm-1.2.1/stm/man/topicCorr.Rd | 114 +++-- stm-1.2.1/stm/man/topicLasso.Rd | 144 +++---- stm-1.2.1/stm/man/topicQuality.Rd | 63 +-- stm-1.2.1/stm/man/unpack.glmnet.Rd |only stm-1.2.1/stm/man/writeLdac.Rd | 54 +- stm-1.2.1/stm/src/RcppExports.cpp | 26 - stm-1.2.1/stm/src/init.c |only stm-1.2.1/stm/tests |only stm-1.2.1/stm/vignettes/extracted.bib | 248 +++++++++++- stm-1.2.1/stm/vignettes/stmVignette.Rnw | 167 ++++---- 125 files changed, 6667 insertions(+), 2640 deletions(-)
Title: Wrapper for MUMPS Library
Description: Some basic features of MUMPS (Multifrontal Massively Parallel
sparse direct Solver) are wrapped in a class whose methods can be used
for sequentially solving a sparse linear system (symmetric or not)
with one or many right hand sides (dense or sparse).
There is a possibility to do separately symbolic analysis, LU factorization
and system solving.
Author: Serguei Sokol
Maintainer: Serguei Sokol <sokol@insa-toulouse.fr>
Diff between rmumps versions 5.0.1.11-1 dated 2016-12-22 and 5.0.1.12 dated 2017-03-06
rmumps-5.0.1.11-1/rmumps/configure.win |only rmumps-5.0.1.11-1/rmumps/inst/include/rmumps_RcppExports.h |only rmumps-5.0.1.12/rmumps/DESCRIPTION | 19 rmumps-5.0.1.12/rmumps/MD5 | 692 +++++++++++- rmumps-5.0.1.12/rmumps/NAMESPACE | 4 rmumps-5.0.1.12/rmumps/NEWS | 12 rmumps-5.0.1.12/rmumps/R/RcppExports.R | 4 rmumps-5.0.1.12/rmumps/R/methods.R | 17 rmumps-5.0.1.12/rmumps/R/zzz.R | 1 rmumps-5.0.1.12/rmumps/cleanup | 1 rmumps-5.0.1.12/rmumps/inst/CITATION |only rmumps-5.0.1.12/rmumps/inst/examples/random_stm.R |only rmumps-5.0.1.12/rmumps/inst/include/rmumps.h | 19 rmumps-5.0.1.12/rmumps/man/Rmumps.Rd | 36 rmumps-5.0.1.12/rmumps/src/Makevars | 8 rmumps-5.0.1.12/rmumps/src/Makevars.win | 14 rmumps-5.0.1.12/rmumps/src/RcppExports.cpp | 16 rmumps-5.0.1.12/rmumps/src/init.c |only rmumps-5.0.1.12/rmumps/src/lib/MUMPS_5.0.1/Makefile | 9 rmumps-5.0.1.12/rmumps/src/lib/MUMPS_5.0.1/Makefile.inc | 16 rmumps-5.0.1.12/rmumps/src/lib/MUMPS_5.0.1/src/Makevars.win | 6 rmumps-5.0.1.12/rmumps/src/lib/Makefile | 24 rmumps-5.0.1.12/rmumps/src/lib/Makefile.win | 30 rmumps-5.0.1.12/rmumps/src/lib/scotch_6.0.4 |only rmumps-5.0.1.12/rmumps/src/rmumps_module.cpp | 108 + rmumps-5.0.1.12/rmumps/tests/testthat/test_rmumps.R | 36 26 files changed, 921 insertions(+), 151 deletions(-)
Title: Sparsity by Worst-Case Quadratic Penalties
Description: Fits classical sparse regression models with
efficient active set algorithms by solving quadratic problems. Also
provides a few methods for model selection purpose (cross-validation,
stability selection).
Author: Julien Chiquet [aut, cre]
Maintainer: Julien Chiquet <julien.chiquet@inra.fr>
Diff between quadrupen versions 0.2-4 dated 2014-01-16 and 0.2-5 dated 2017-03-06
DESCRIPTION | 17 ++++++++++------- MD5 | 15 ++++++++------- NAMESPACE | 8 +++----- NEWS | 4 ++++ R/crossval-class.R | 19 +++++++++++-------- R/quadrupen-class.R | 4 ++-- R/quadrupen.R | 4 ++-- R/stability-class.R | 4 ++-- src/init.c |only 9 files changed, 42 insertions(+), 33 deletions(-)
Title: Wrapper Functions for FSL ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')
Description: Wrapper functions that interface with 'FSL'
<http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/>, a powerful and commonly-used 'neuroimaging'
software, using system commands. The goal is to be able to interface with 'FSL'
completely in R, where you pass R objects of class 'nifti', implemented by
package 'oro.nifti', and the function executes an 'FSL' command and returns an R
object of class 'nifti' if desired.
Author: John Muschelli <muschellij2@gmail.com>
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between fslr versions 2.0 dated 2016-09-28 and 2.12 dated 2017-03-06
fslr-2.0/fslr/man/fsl_slicetimer.Rd |only fslr-2.12/fslr/DESCRIPTION | 14 fslr-2.12/fslr/MD5 | 433 ++++++++++++++------------ fslr-2.12/fslr/NAMESPACE | 55 +++ fslr-2.12/fslr/R/avscale.R |only fslr-2.12/fslr/R/dtifit.R | 2 fslr-2.12/fslr/R/fast.R | 7 fslr-2.12/fslr/R/fsl_abs.R |only fslr-2.12/fslr/R/fsl_acos.R |only fslr-2.12/fslr/R/fsl_add.R |only fslr-2.12/fslr/R/fsl_anat.R | 2 fslr-2.12/fslr/R/fsl_asin.R |only fslr-2.12/fslr/R/fsl_atan.R |only fslr-2.12/fslr/R/fsl_bet.R |only fslr-2.12/fslr/R/fsl_bin.R |only fslr-2.12/fslr/R/fsl_bin_tab.R |only fslr-2.12/fslr/R/fsl_binv.R |only fslr-2.12/fslr/R/fsl_cos.R |only fslr-2.12/fslr/R/fsl_dice.R |only fslr-2.12/fslr/R/fsl_dilate.R |only fslr-2.12/fslr/R/fsl_div.R |only fslr-2.12/fslr/R/fsl_edge.R |only fslr-2.12/fslr/R/fsl_erode.R |only fslr-2.12/fslr/R/fsl_exp.R |only fslr-2.12/fslr/R/fsl_fill.R |only fslr-2.12/fslr/R/fsl_index.R |only fslr-2.12/fslr/R/fsl_log.R |only fslr-2.12/fslr/R/fsl_mask.R |only fslr-2.12/fslr/R/fsl_maths.R |only fslr-2.12/fslr/R/fsl_merge.R |only fslr-2.12/fslr/R/fsl_mul.R |only fslr-2.12/fslr/R/fsl_nan.R |only fslr-2.12/fslr/R/fsl_nanm.R |only fslr-2.12/fslr/R/fsl_rand.R |only fslr-2.12/fslr/R/fsl_randn.R |only fslr-2.12/fslr/R/fsl_recip.R |only fslr-2.12/fslr/R/fsl_rem.R |only fslr-2.12/fslr/R/fsl_slicetimer.R | 16 fslr-2.12/fslr/R/fsl_smooth.R |only fslr-2.12/fslr/R/fsl_sqr.R |only fslr-2.12/fslr/R/fsl_sqrt.R |only fslr-2.12/fslr/R/fsl_sub.R |only fslr-2.12/fslr/R/fsl_sub2.R |only fslr-2.12/fslr/R/fsl_swapdim.R |only fslr-2.12/fslr/R/fsl_tan.R |only fslr-2.12/fslr/R/fsl_thresh.R |only fslr-2.12/fslr/R/fslbin.R |only fslr-2.12/fslr/R/fslhd.R | 55 --- fslr-2.12/fslr/R/fslmin_max.R |only fslr-2.12/fslr/R/fslrobustfov.R |only fslr-2.12/fslr/R/fslsmooth_in_mask.R |only fslr-2.12/fslr/R/fslsplit.R | 16 fslr-2.12/fslr/R/mid_sagittal_align.R |only fslr-2.12/fslr/R/readrpi.R |only fslr-2.12/fslr/R/rpi_orient.R |only fslr-2.12/fslr/R/topup.R |only fslr-2.12/fslr/build/vignette.rds |binary fslr-2.12/fslr/inst/doc/dti_data.Rmd | 2 fslr-2.12/fslr/inst/doc/dti_data.html | 13 fslr-2.12/fslr/inst/doc/fslr.Rmd | 2 fslr-2.12/fslr/man/aux_file-methods.Rd | 3 fslr-2.12/fslr/man/bitpix-methods.Rd | 3 fslr-2.12/fslr/man/cal_max-methods.Rd | 3 fslr-2.12/fslr/man/cal_min-methods.Rd | 3 fslr-2.12/fslr/man/check_file.Rd | 1 fslr-2.12/fslr/man/checkout.Rd | 1 fslr-2.12/fslr/man/data_type-methods.Rd | 3 fslr-2.12/fslr/man/datatype-methods.Rd | 3 fslr-2.12/fslr/man/descrip-methods.Rd | 3 fslr-2.12/fslr/man/dim_-methods.Rd | 3 fslr-2.12/fslr/man/download_fsl.Rd | 1 fslr-2.12/fslr/man/dtifit.Rd | 1 fslr-2.12/fslr/man/eddy_correct.Rd | 1 fslr-2.12/fslr/man/fast.Rd | 1 fslr-2.12/fslr/man/fast.help.Rd | 1 fslr-2.12/fslr/man/flirt.Rd | 1 fslr-2.12/fslr/man/flirt.help.Rd | 1 fslr-2.12/fslr/man/flirt_apply.Rd | 1 fslr-2.12/fslr/man/fnirt.Rd | 1 fslr-2.12/fslr/man/fnirt.help.Rd | 1 fslr-2.12/fslr/man/fnirt_with_affine.Rd | 1 fslr-2.12/fslr/man/fnirt_with_affine_apply.Rd | 1 fslr-2.12/fslr/man/fsl_anat.Rd | 1 fslr-2.12/fslr/man/fsl_anat.help.Rd | 1 fslr-2.12/fslr/man/fsl_applywarp.Rd | 1 fslr-2.12/fslr/man/fsl_applywarp.help.Rd | 1 fslr-2.12/fslr/man/fsl_atlas_dir.Rd | 1 fslr-2.12/fslr/man/fsl_avscale.Rd |only fslr-2.12/fslr/man/fsl_biascorrect.Rd | 1 fslr-2.12/fslr/man/fsl_bin_tab.Rd |only fslr-2.12/fslr/man/fsl_data_dir.Rd | 1 fslr-2.12/fslr/man/fsl_dice.Rd |only fslr-2.12/fslr/man/fsl_std_dir.Rd | 1 fslr-2.12/fslr/man/fsl_version.Rd | 1 fslr-2.12/fslr/man/fslabs.Rd | 18 - fslr-2.12/fslr/man/fslabs.help.Rd | 1 fslr-2.12/fslr/man/fslacos.Rd | 18 - fslr-2.12/fslr/man/fslacos.help.Rd | 1 fslr-2.12/fslr/man/fsladd.Rd | 22 - fslr-2.12/fslr/man/fsladd.help.Rd | 1 fslr-2.12/fslr/man/fslasin.Rd | 18 - fslr-2.12/fslr/man/fslasin.help.Rd | 1 fslr-2.12/fslr/man/fslatan.Rd | 18 - fslr-2.12/fslr/man/fslatan.help.Rd | 1 fslr-2.12/fslr/man/fslbet.Rd | 18 - fslr-2.12/fslr/man/fslbet.help.Rd | 1 fslr-2.12/fslr/man/fslbin.Rd | 27 + fslr-2.12/fslr/man/fslbin.help.Rd | 1 fslr-2.12/fslr/man/fslbinv.Rd | 18 - fslr-2.12/fslr/man/fslbinv.help.Rd | 1 fslr-2.12/fslr/man/fslchfiletype.Rd | 1 fslr-2.12/fslr/man/fslchfiletype.help.Rd | 1 fslr-2.12/fslr/man/fslcmd.Rd | 6 fslr-2.12/fslr/man/fslcog.Rd | 1 fslr-2.12/fslr/man/fslcos.Rd | 18 - fslr-2.12/fslr/man/fslcos.help.Rd | 1 fslr-2.12/fslr/man/fslcpgeom.Rd | 1 fslr-2.12/fslr/man/fslcpgeom.help.Rd | 1 fslr-2.12/fslr/man/fsldilate.Rd | 18 - fslr-2.12/fslr/man/fsldir.Rd | 4 fslr-2.12/fslr/man/fsldiv.Rd | 22 - fslr-2.12/fslr/man/fsldiv.help.Rd | 1 fslr-2.12/fslr/man/fsledge.Rd | 18 - fslr-2.12/fslr/man/fsledge.help.Rd | 1 fslr-2.12/fslr/man/fslentropy.Rd | 1 fslr-2.12/fslr/man/fslerode.Rd | 18 - fslr-2.12/fslr/man/fslerode.help.Rd | 1 fslr-2.12/fslr/man/fslexp.Rd | 18 - fslr-2.12/fslr/man/fslexp.help.Rd | 1 fslr-2.12/fslr/man/fslfill.Rd | 22 - fslr-2.12/fslr/man/fslfill.help.Rd | 1 fslr-2.12/fslr/man/fslfill2.Rd | 1 fslr-2.12/fslr/man/fslhd.Rd | 3 fslr-2.12/fslr/man/fslhd.help.Rd | 1 fslr-2.12/fslr/man/fslhd.parse.Rd | 1 fslr-2.12/fslr/man/fslhelp.Rd | 1 fslr-2.12/fslr/man/fslindex.Rd | 18 - fslr-2.12/fslr/man/fslindex.help.Rd | 1 fslr-2.12/fslr/man/fsllog.Rd | 18 - fslr-2.12/fslr/man/fsllog.help.Rd | 1 fslr-2.12/fslr/man/fslmask.Rd | 22 - fslr-2.12/fslr/man/fslmask.help.Rd | 1 fslr-2.12/fslr/man/fslmaths.Rd | 18 - fslr-2.12/fslr/man/fslmaths.help.Rd | 1 fslr-2.12/fslr/man/fslmean.Rd | 1 fslr-2.12/fslr/man/fslmerge.Rd | 24 - fslr-2.12/fslr/man/fslmerge.help.Rd | 1 fslr-2.12/fslr/man/fslmin_max.Rd |only fslr-2.12/fslr/man/fslmul.Rd | 22 - fslr-2.12/fslr/man/fslmul.help.Rd | 1 fslr-2.12/fslr/man/fslnan.Rd | 18 - fslr-2.12/fslr/man/fslnan.help.Rd | 1 fslr-2.12/fslr/man/fslnanm.Rd | 18 - fslr-2.12/fslr/man/fslnanm.help.Rd | 1 fslr-2.12/fslr/man/fslorient.Rd | 1 fslr-2.12/fslr/man/fslorient.help.Rd | 1 fslr-2.12/fslr/man/fslorient_wrap.Rd | 5 fslr-2.12/fslr/man/fslorienter.Rd | 1 fslr-2.12/fslr/man/fslrand.Rd | 18 - fslr-2.12/fslr/man/fslrand.help.Rd | 1 fslr-2.12/fslr/man/fslrandn.Rd | 18 - fslr-2.12/fslr/man/fslrandn.help.Rd | 1 fslr-2.12/fslr/man/fslrange.Rd | 1 fslr-2.12/fslr/man/fslrecip.Rd | 18 - fslr-2.12/fslr/man/fslrecip.help.Rd | 1 fslr-2.12/fslr/man/fslrem.Rd | 22 - fslr-2.12/fslr/man/fslrem.help.Rd | 1 fslr-2.12/fslr/man/fslreorient2std.Rd | 1 fslr-2.12/fslr/man/fslreorient2std.help.Rd | 1 fslr-2.12/fslr/man/fslrobustfov.Rd |only fslr-2.12/fslr/man/fslrobustfov.help.Rd |only fslr-2.12/fslr/man/fslroi.Rd | 1 fslr-2.12/fslr/man/fslsd.Rd | 1 fslr-2.12/fslr/man/fslsin.Rd | 1 fslr-2.12/fslr/man/fslsin.help.Rd | 1 fslr-2.12/fslr/man/fslslicetimer.Rd |only fslr-2.12/fslr/man/fslsmooth.Rd | 26 - fslr-2.12/fslr/man/fslsmooth.help.Rd | 1 fslr-2.12/fslr/man/fslsmooth_in_mask.Rd |only fslr-2.12/fslr/man/fslsplit.Rd | 10 fslr-2.12/fslr/man/fslsplit.help.Rd | 1 fslr-2.12/fslr/man/fslsqr.Rd | 18 - fslr-2.12/fslr/man/fslsqr.help.Rd | 1 fslr-2.12/fslr/man/fslsqrt.Rd | 18 - fslr-2.12/fslr/man/fslsqrt.help.Rd | 1 fslr-2.12/fslr/man/fslstats.Rd | 1 fslr-2.12/fslr/man/fslstats.help.Rd | 7 fslr-2.12/fslr/man/fslsub.Rd | 22 - fslr-2.12/fslr/man/fslsub.help.Rd | 1 fslr-2.12/fslr/man/fslsub2.Rd | 18 - fslr-2.12/fslr/man/fslsub2.help.Rd | 1 fslr-2.12/fslr/man/fslsum.Rd | 1 fslr-2.12/fslr/man/fslswapdim.Rd | 18 - fslr-2.12/fslr/man/fslswapdim.help.Rd | 1 fslr-2.12/fslr/man/fsltan.Rd | 18 - fslr-2.12/fslr/man/fsltan.help.Rd | 1 fslr-2.12/fslr/man/fslthresh.Rd | 22 - fslr-2.12/fslr/man/fslthresh.help.Rd | 1 fslr-2.12/fslr/man/fslval.Rd | 3 fslr-2.12/fslr/man/fslval.help.Rd | 1 fslr-2.12/fslr/man/fslview.Rd | 1 fslr-2.12/fslr/man/fslview.help.Rd | 1 fslr-2.12/fslr/man/fslvol.Rd | 1 fslr-2.12/fslr/man/fslvolume.Rd | 1 fslr-2.12/fslr/man/get.fsl.Rd | 1 fslr-2.12/fslr/man/get.fsloutput.Rd | 1 fslr-2.12/fslr/man/get.imgext.Rd | 1 fslr-2.12/fslr/man/getForms.Rd | 1 fslr-2.12/fslr/man/have.fsl.Rd | 1 fslr-2.12/fslr/man/intent_code-methods.Rd | 3 fslr-2.12/fslr/man/intent_name-methods.Rd | 3 fslr-2.12/fslr/man/intent_p1-methods.Rd | 3 fslr-2.12/fslr/man/intent_p2-methods.Rd | 3 fslr-2.12/fslr/man/intent_p3-methods.Rd | 3 fslr-2.12/fslr/man/magic-methods.Rd | 3 fslr-2.12/fslr/man/mcflirt.Rd | 1 fslr-2.12/fslr/man/mcflirt.help.Rd | 1 fslr-2.12/fslr/man/melodic.Rd | 1 fslr-2.12/fslr/man/melodic.help.Rd | 1 fslr-2.12/fslr/man/mid_sagittal_align.Rd |only fslr-2.12/fslr/man/mni_fname.Rd | 1 fslr-2.12/fslr/man/mni_img.Rd | 1 fslr-2.12/fslr/man/orientation-methods.Rd | 5 fslr-2.12/fslr/man/parse_avscale.Rd |only fslr-2.12/fslr/man/pixdim-methods.Rd | 3 fslr-2.12/fslr/man/probtrackx.Rd | 1 fslr-2.12/fslr/man/qform_code-methods.Rd | 3 fslr-2.12/fslr/man/readrpi.Rd |only fslr-2.12/fslr/man/reverse_rpi_orient.Rd |only fslr-2.12/fslr/man/rpi_orient.Rd |only fslr-2.12/fslr/man/run_first_all.Rd | 1 fslr-2.12/fslr/man/run_first_all.help.Rd | 1 fslr-2.12/fslr/man/scl_inter-methods.Rd | 3 fslr-2.12/fslr/man/scl_slope-methods.Rd | 3 fslr-2.12/fslr/man/sform_code-methods.Rd | 3 fslr-2.12/fslr/man/sizeof_hdr-methods.Rd | 3 fslr-2.12/fslr/man/slice_code-methods.Rd | 3 fslr-2.12/fslr/man/slice_duration-methods.Rd | 3 fslr-2.12/fslr/man/slice_end-methods.Rd | 3 fslr-2.12/fslr/man/slice_start-methods.Rd | 3 fslr-2.12/fslr/man/susan.Rd | 1 fslr-2.12/fslr/man/susan.help.Rd | 1 fslr-2.12/fslr/man/toffset-methods.Rd | 3 fslr-2.12/fslr/man/topup.Rd |only fslr-2.12/fslr/man/vox_offset-methods.Rd | 3 fslr-2.12/fslr/man/xfibres.Rd | 3 fslr-2.12/fslr/vignettes/dti_data.Rmd | 2 fslr-2.12/fslr/vignettes/fslr.Rmd | 2 248 files changed, 875 insertions(+), 657 deletions(-)
Title: Supervised Weight of Evidence Binning of Numeric Variables and
Factors
Description: Implements an automated binning of numeric variables and factors with
respect to a dichotomous target variable.
Two approaches are provided: An implementation of fine and coarse classing that
merges granular classes and levels step by step. And a tree-like approach that
iteratively segments the initial bins via binary splits. Both procedures merge,
respectively split, bins based on similar weight of evidence (WOE) values and
stop via an information value (IV) based criteria.
The package can be used with single variables or an entire data frame. It provides
flexible tools for exploring different binning solutions and for deploying them to
(new) data.
Author: Thilo Eichenberg
Maintainer: Thilo Eichenberg <te.r@gmx.net>
Diff between woeBinning versions 0.1.1 dated 2017-02-21 and 0.1.2 dated 2017-03-06
DESCRIPTION | 30 ++++++++++++++---------------- MD5 | 26 ++++++++++++++------------ NAMESPACE | 1 + R/woe.binning.R | 43 ++++++++++++++++++++++++++++--------------- R/woe.binning.deploy.R | 28 +++++++++++++--------------- R/woe.binning.plot.R | 7 +++---- R/woe.binning.table.R | 15 +++++++-------- R/woe.tree.binning.R |only man/germancredit.Rd | 1 - man/woe.binning.Rd | 26 ++++++++++++-------------- man/woe.binning.deploy.Rd | 35 ++++++++++++++++------------------- man/woe.binning.plot.Rd | 11 +++-------- man/woe.binning.table.Rd | 18 +++++++----------- man/woe.tree.binning.Rd |only man/woeBinning.Rd | 21 +++++++++++---------- 15 files changed, 129 insertions(+), 133 deletions(-)
Title: False Discovery Control Procedure Integrating the Prior
Structure Information
Description: Perform more powerful false discovery control (FDR) for microbiome data, taking into account the prior phylogenetic relationship among bacteria species. As a general methodology, it is applicable to any type of (genomic) data with prior structure information.
Author: Jun Chen
Maintainer: Jun Chen <chen.jun2@mayo.edu>
Diff between StructFDR versions 1.0 dated 2016-11-01 and 1.1 dated 2017-03-06
StructFDR-1.0/StructFDR/man/Initialize.corHerit.Rd |only StructFDR-1.0/StructFDR/man/coef.corHerit.Rd |only StructFDR-1.0/StructFDR/man/corHerit.Rd |only StructFDR-1.0/StructFDR/man/corMatrix.corHerit.Rd |only StructFDR-1.1/StructFDR/DESCRIPTION | 13 StructFDR-1.1/StructFDR/MD5 | 27 StructFDR-1.1/StructFDR/NAMESPACE | 14 StructFDR-1.1/StructFDR/R/StructFDR.R | 722 ++++++++++++++++---- StructFDR-1.1/StructFDR/build |only StructFDR-1.1/StructFDR/data |only StructFDR-1.1/StructFDR/inst |only StructFDR-1.1/StructFDR/man/AdjStats.Rd | 4 StructFDR-1.1/StructFDR/man/MicrobiomeSeqTreeFDR.Rd |only StructFDR-1.1/StructFDR/man/SimulateData.Rd |only StructFDR-1.1/StructFDR/man/StructFDR.Rd | 18 StructFDR-1.1/StructFDR/man/TreeFDR.Rd | 18 StructFDR-1.1/StructFDR/man/alcohol.Rd |only StructFDR-1.1/StructFDR/man/throat.parameter.Rd |only StructFDR-1.1/StructFDR/vignettes |only 19 files changed, 648 insertions(+), 168 deletions(-)
Title: Wrapper Functions for 'SPM' (Statistical Parametric Mapping)
Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'
Description: Installs 'SPM12' to the R library directory and has associated
functions for 'fMRI' and general imaging utilities, called through 'MATLAB'.
Author: John Muschelli
Maintainer: John Muschelli <muschellij2@gmail.com>
Diff between spm12r versions 2.0 dated 2016-09-28 and 2.3.1 dated 2017-03-06
DESCRIPTION | 12 +++--- MD5 | 70 ++++++++++++++++++++----------------- R/acpc_reorient.R | 2 - R/install_spm12.R | 18 +++++++-- R/run_spm12_script.R | 2 - R/spm12_coregister.R | 6 ++- R/spm12_normalize.R | 12 ++++-- R/spm12_normalize_write.R | 51 ++++++++++++++++---------- R/spm12_segment.R | 34 +++++++++++++---- R/spm12_smooth.R | 9 +++- R/spm_probs_to_seg.R | 2 - build |only inst/doc |only inst/scripts/Normalize_Write_job.m | 5 +- inst/scripts/OldNorm_job.m |only inst/scripts/Segment_job.m | 2 - man/acpc_reorient.Rd | 1 man/bwconncomp.Rd | 1 man/filename_check.Rd | 1 man/group_xyz.Rd | 1 man/install_spm12.Rd | 1 man/ntime_points.Rd | 1 man/run_spm12_script.Rd | 1 man/spm12_coregister.Rd | 1 man/spm12_normalize.Rd | 3 - man/spm12_normalize_est.Rd | 1 man/spm12_normalize_write.Rd | 13 ++++-- man/spm12_realign.Rd | 1 man/spm12_realign_est.Rd | 1 man/spm12_script.Rd | 1 man/spm12_segment.Rd | 5 +- man/spm12_slice_timing.Rd | 1 man/spm12_smooth.Rd | 1 man/spm_bwlabel.Rd | 1 man/spm_dir.Rd | 1 man/spm_probs_to_seg.Rd | 3 - vignettes |only 37 files changed, 153 insertions(+), 112 deletions(-)
Title: Forecast Verification Routines for Ensemble Forecasts of Weather
and Climate
Description: A collection of forecast verification routines developed for the SPECS
FP7 project. The emphasis is on comparative verification of ensemble forecasts of weather and climate.
Author: Stefan Siegert [aut, cre],
Jonas Bhend [ctb],
Igor Kroener [ctb],
Matteo De Felice [ctb]
Maintainer: Stefan Siegert <s.siegert@exeter.ac.uk>
Diff between SpecsVerification versions 0.5-1 dated 2017-02-28 and 0.5-2 dated 2017-03-06
DESCRIPTION | 8 ++-- MD5 | 81 +++++++++++++++++++++++----------------------- R/Auc.R | 4 +- R/AucDiff.R | 4 +- R/BrierDecomp.R | 6 +-- R/CorrDiff.R | 4 +- R/DressCrps.R | 2 - R/DressEnsemble.R | 2 - R/DressIgn.R | 2 - R/EnsBrier.R | 2 - R/EnsCrps.R | 2 - R/EnsQs.R | 1 R/EnsRps.R | 1 R/FitAkdParameters.R | 2 - R/GaussCrps.R | 2 - R/PlotRankhist.R | 4 +- R/Rankhist.R | 4 +- R/ReliabilityDiagram.R | 2 - R/ScoreDiff.R | 2 - R/TestRankhist.R | 34 +------------------ R/eurotempforecast.R | 6 +-- build |only man/Auc.Rd | 4 +- man/AucDiff.Rd | 4 +- man/BrierDecomp.Rd | 6 +-- man/CorrDiff.Rd | 4 +- man/DressCrps.Rd | 2 - man/DressEnsemble.Rd | 2 - man/DressIgn.Rd | 2 - man/EnsBrier.Rd | 2 - man/EnsCrps.Rd | 2 - man/EnsQs.Rd | 3 - man/EnsRps.Rd | 3 - man/FitAkdParameters.Rd | 2 - man/GaussCrps.Rd | 2 - man/PlotRankhist.Rd | 4 -- man/Rankhist.Rd | 4 -- man/ReliabilityDiagram.Rd | 2 - man/ScoreDiff.Rd | 2 - man/TestRankhist.Rd | 4 +- man/eurotempforecast.Rd | 6 +-- src/enscrps.cpp | 8 ++-- 42 files changed, 101 insertions(+), 142 deletions(-)
More information about SpecsVerification at CRAN
Permanent link
Title: Data Transformation and Labelled Data Utility Functions
Description: Collection of miscellaneous utility functions (especially intended
for people coming from other statistical software packages like 'SPSS', and/
or who are new to R), supporting following common tasks when working with
data : 1) Reading and writing data between R and other statistical software
packages like 'SPSS', 'SAS' or 'Stata' and working with labelled data; this
includes easy ways to get and set label attributes, to convert labelled
vectors into factors (and vice versa), or to deal with multiple declared
missing values etc. 2) Data transformation tasks like recoding,
dichotomizing or grouping variables, setting and replacing missing values.
The data transformation functions also support labelled data.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjmisc versions 2.3.0 dated 2017-02-07 and 2.3.1 dated 2017-03-06
DESCRIPTION | 16 MD5 | 135 ++-- NAMESPACE | 3 NEWS | 17 NEWS.md | 21 R/S3-methods.R | 84 +- R/add_columns.R | 89 ++ R/add_labels.R | 39 - R/as_labelled.R | 256 ++++---- R/copy_labels.R | 6 R/count_na.R | 25 R/descr.R | 192 +++--- R/dicho.R | 274 ++++---- R/frq.R | 1 R/get_label.R | 3 R/get_labels.R | 7 R/group_var.R | 490 ++++++++-------- R/helpfunctions.R | 302 +++++---- R/read_write.R | 595 +++++++++---------- R/rec.R | 836 +++++++++++++-------------- R/rec_pattern.R | 4 R/recode_to.R | 262 ++++---- R/ref_lvl.R | 224 +++---- R/remove_all_labels.R | 6 R/replace_na.R | 318 +++++----- R/set_label.R | 322 +++++----- R/set_labels.R | 824 +++++++++++++-------------- R/set_na.R | 499 ++++++++-------- R/split_var.R | 266 ++++---- R/std.R | 222 +++---- R/str_pos.R | 24 R/to_factor.R | 290 ++++----- R/to_label.R | 612 ++++++++++---------- R/to_value.R | 2 R/unlabel.R | 7 R/var_labels.R | 2 R/word_wrap.R | 132 ++-- R/zap_labels.R | 8 build/partial.rdb |binary inst/doc/design_philosophy.R | 100 +-- inst/doc/design_philosophy.html | 568 +++++++++--------- inst/doc/exploringdatasets.R | 144 ++-- inst/doc/exploringdatasets.html | 519 ++++++++--------- inst/doc/intro_sjmisc.R | 566 +++++++++--------- inst/doc/intro_sjmisc.Rmd | 882 ++++++++++++++-------------- inst/doc/intro_sjmisc.html | 1219 ++++++++++++++++++++-------------------- inst/doc/labelleddata.R | 110 +-- inst/doc/labelleddata.html | 733 ++++++++++++------------ man/add_columns.Rd | 57 + man/count_na.Rd | 25 man/descr.Rd | 18 man/get_label.Rd | 3 man/get_labels.Rd | 7 man/read_spss.Rd | 7 man/rec.Rd | 46 - man/rec_pattern.Rd | 4 man/reexports.Rd |only man/remove_all_labels.Rd | 6 man/replace_na.Rd | 2 man/set_label.Rd | 26 man/set_labels.Rd | 6 man/set_na.Rd | 35 - man/std.Rd | 2 man/str_pos.Rd | 8 man/unlabel.Rd | 9 man/var_rename.Rd | 4 man/write_spss.Rd | 24 man/zap_labels.Rd | 2 vignettes/intro_sjmisc.Rmd | 882 ++++++++++++++-------------- 69 files changed, 6833 insertions(+), 6596 deletions(-)
Title: R Interface to the 'Protocol Buffers' 'API' (Version 2 or 3)
Description: Protocol Buffers are a way of encoding structured data in an
efficient yet extensible format. Google uses Protocol Buffers for almost all
of its internal 'RPC' protocols and file formats. Additional documentation
is available in two included vignettes one of which corresponds to our paper
in the Journal of Statistical Software (2016, v71i02). Either version 2 or 3
of the 'Protocol Buffers' 'API' is supported.
Author: Romain Francois, Dirk Eddelbuettel, Murray Stokely and Jeroen Ooms
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RProtoBuf versions 0.4.8 dated 2017-01-17 and 0.4.9 dated 2017-03-06
ChangeLog | 51 +++++ DESCRIPTION | 8 MD5 | 54 +++--- NAMESPACE | 14 - R/00classes.R | 12 - R/clone.R | 2 R/extensions.R | 3 R/has.R | 2 R/internals.R | 2 R/merge.R | 2 R/unit_tests.R | 3 R/with.R | 4 cleanup | 2 configure | 343 +++------------------------------------ configure.ac |only inst/NEWS.Rd | 18 ++ inst/doc/RProtoBuf-intro.Rnw | 40 ++-- inst/doc/RProtoBuf-intro.pdf |binary inst/doc/RProtoBuf-paper.pdf |binary inst/doc/RProtoBuf-quickref.pdf |binary inst/doc/RProtoBuf-unitTests.pdf |binary src/Makevars.in | 12 - src/Makevars.win | 1 src/extensions.cpp | 2 src/init.c |only src/rprotobuf.cpp | 2 src/rprotobuf.h | 2 vignettes/RProtoBuf-intro.Rnw | 40 ++-- vignettes/figures/fig-SER.pdf |binary 29 files changed, 206 insertions(+), 413 deletions(-)
Title: L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments,
and Many Distributions
Description: Extensive functions for L-moments (LMs) and probability-weighted moments
(PWMs), parameter estimation for distributions, LM computation for distributions, and
L-moment ratio diagrams. Maximum likelihood and maximum product of spacings estimation
are also available. LMs for right-tail and left-tail censoring by known or unknown
threshold and by indicator variable are available. Asymmetric (asy) trimmed LMs
(TL-moments, TLMs) are supported. LMs of residual (resid) and reversed (rev) resid life
are implemented along with 13 quantile function operators for reliability and survival
analyses. Exact analytical bootstrap estimates of order statistics, LMs, and variances-
covariances of LMs are provided. The Harri-Coble Tau34-squared Normality Test is available.
Distribution support with "L" (LMs), "TL" (TLMs) and added (+) support for right-tail
censoring (RC) encompasses: Asy Exponential (Exp) Power [L], Asy Triangular [L],
Cauchy [TL], Eta-Mu [L], Exp. [L], Gamma [L], Generalized (Gen) Exp Poisson [L],
Gen Extreme Value [L], Gen Lambda [L,TL], Gen Logistic [L), Gen Normal [L],
Gen Pareto [L+RC, TL], Govindarajulu [L], Gumbel [L], Kappa [L], Kappa-Mu [L],
Kumaraswamy [L], Laplace [L], Linear Mean Resid. Quantile Function [L], Normal [L],
3-p log-Normal [L], Pearson Type III [L], Rayleigh [L], Rev-Gumbel [L+RC], Rice/Rician [L],
Slash [TL], 3-p Student t [L], Truncated Exponential [L], Wakeby [L], and Weibull [L].
Multivariate sample L-comoments (LCMs) are implemented to measure asymmetric associations.
Author: William Asquith
Maintainer: William Asquith <william.asquith@ttu.edu>
Diff between lmomco versions 2.2.5 dated 2016-09-10 and 2.2.6 dated 2017-03-06
DESCRIPTION | 27 ++++++++++++--- MD5 | 72 ++++++++++++++++++++-------------------- NEWS | 74 ++++++++++++++++++++++++++++++++++------- R/TLmoms.R | 9 ++--- R/are.lmom.valid.R | 30 +++++++++++----- R/are.pargam.valid.R | 4 +- R/are.parln3.valid.R | 27 +++++++++------ R/cdfgam.R | 2 - R/cdfgev.R | 4 -- R/cdfglo.R | 4 -- R/cdfgno.R | 4 -- R/cdfgpa.R | 4 -- R/mle2par.R | 8 ++-- R/mps2par.R | 5 +- R/parln3.R | 6 +-- R/pdfgam.R | 2 - R/pdfgev.R | 4 -- R/pdfglo.R | 4 -- R/pdfgno.R | 4 -- R/pdfgpa.R | 4 -- R/pdfkap.R | 4 -- R/pdfkmu.R | 16 +++----- R/pdfrice.R | 6 +-- R/quagam.R | 2 - R/quagep.R | 8 +--- R/quagev.R | 4 -- R/quaglo.R | 4 -- R/quagpa.R | 4 -- R/quatexp.R | 4 -- README | 9 ----- inst/ACKNOWLEDGEMENTS | 1 man/TLmoms.Rd | 3 + man/are.lmom.valid.Rd | 14 +++++-- man/lmomco-package.Rd | 44 +++++++++++++++++++++++- man/lmomgev.Rd | 90 ++++++++++++++++++++++++++++++++++++++++++++++++++ man/lmomgum.Rd | 1 man/mps2par.Rd | 34 ++++++++++-------- 37 files changed, 366 insertions(+), 180 deletions(-)
Title: Read Data from Files Readable by 'gnumeric'
Description: Read data files readable by 'gnumeric' into 'R'. Can read
whole sheet or a range, from several file formats, including
the native format of 'gnumeric'. Reading is done by using
'ssconvert' (a file converter utility included in the 'gnumeric'
distribution <http://projects.gnome.org/gnumeric/>) to convert
the requested part to CSV. From 'gnumeric' files (but not other
formats) can list sheet names and sheet sizes or read all
sheets.
Author: Karoly Antal <antalk2@gmail.com>.
Maintainer: Karoly Antal <antalk2@gmail.com>
Diff between gnumeric versions 0.7-6 dated 2016-10-25 and 0.7-7 dated 2017-03-06
DESCRIPTION | 8 +++---- MD5 | 4 +-- R/read.gnumeric.R | 60 +++++++++++++++++++++++++++++------------------------- 3 files changed, 39 insertions(+), 33 deletions(-)
Title: Parsing Command-Line Arguments and Variable Interpolation
Description: This is yet another command-line argument parser which wraps the
powerful Perl module Getopt::Long and with some adaptation for easier use
in R. It also provides a simple way for variable interpolation in R.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between GetoptLong versions 0.1.5 dated 2016-09-26 and 0.1.6 dated 2017-03-06
DESCRIPTION | 8 +- MD5 | 34 +++++------ NAMESPACE | 4 - NEWS | 9 ++ R/0_global.R | 3 R/GetoptLong.R | 106 +++++++++++++++++++++++------------ R/qq.R | 4 - build/vignette.rds |binary inst/doc/GetoptLong.html | 13 +--- inst/doc/variable_interpolation.R | 1 inst/doc/variable_interpolation.Rmd | 3 inst/doc/variable_interpolation.html | 60 ++++++------------- man/GetoptLong.rd | 5 - man/get_scriptname.rd | 2 man/qq.options.rd | 1 man/qqcat.rd | 2 tests/testthat/test_GetoptLong.R | 15 ++++ vignettes/variable_interpolation.Rmd | 3 18 files changed, 159 insertions(+), 114 deletions(-)
Title: Data Frames in R for Make
Description: Reproducible build system for any project. Understands
the dependency structure of your workflow, builds out-of-date
targets, skips up-to-date targets, and offers two forms of
parallel computing.
Author: William Michael Landau [aut, cre],
Eli Lilly and Company [cph]
Maintainer: William Michael Landau <will.landau@lilly.com>
Diff between drake versions 1.0.1 dated 2017-02-27 and 2.0.0 dated 2017-03-06
drake-1.0.1/drake/R/Make-class.R |only drake-1.0.1/drake/R/color.R |only drake-1.0.1/drake/R/dep.R |only drake-1.0.1/drake/R/help.R |only drake-1.0.1/drake/R/makefile.R |only drake-1.0.1/drake/R/manipulate.R |only drake-1.0.1/drake/R/sanitize.R |only drake-1.0.1/drake/R/tidy.R |only drake-1.0.1/drake/man/debug_cleanup.Rd |only drake-1.0.1/drake/man/debug_setup.Rd |only drake-1.0.1/drake/man/example_plan.Rd |only drake-1.0.1/drake/man/example_plans.Rd |only drake-1.0.1/drake/man/help_drake.Rd |only drake-1.0.1/drake/tests/makefiles |only drake-1.0.1/drake/tests/testthat/analyses-summaries |only drake-1.0.1/drake/tests/testthat/makefile-debug |only drake-1.0.1/drake/tests/testthat/makefile-small |only drake-1.0.1/drake/tests/testthat/test-analyses-summaries.R |only drake-1.0.1/drake/tests/testthat/test-check.R |only drake-1.0.1/drake/tests/testthat/test-clean.R |only drake-1.0.1/drake/tests/testthat/test-code.R |only drake-1.0.1/drake/tests/testthat/test-dep.R |only drake-1.0.1/drake/tests/testthat/test-evaluate.R |only drake-1.0.1/drake/tests/testthat/test-examples.R |only drake-1.0.1/drake/tests/testthat/test-file.R |only drake-1.0.1/drake/tests/testthat/test-help_drake.R |only drake-1.0.1/drake/tests/testthat/test-make.R |only drake-1.0.1/drake/tests/testthat/test-makefile.R |only drake-1.0.1/drake/tests/testthat/test-manipulation.R |only drake-1.0.1/drake/tests/testthat/test-onload.R |only drake-1.0.1/drake/tests/testthat/test-prune.R |only drake-1.0.1/drake/tests/testthat/test-rebuild.R |only drake-1.0.1/drake/tests/testthat/test-sanitize.R |only drake-1.0.1/drake/tests/testthat/utils.R |only drake-2.0.0/drake/DESCRIPTION | 22 drake-2.0.0/drake/MD5 | 167 +-- drake-2.0.0/drake/NAMESPACE | 36 drake-2.0.0/drake/R/Makefile.R |only drake-2.0.0/drake/R/build.R |only drake-2.0.0/drake/R/cache.R | 296 ++---- drake-2.0.0/drake/R/check.R |only drake-2.0.0/drake/R/clean.R | 108 +- drake-2.0.0/drake/R/config.R |only drake-2.0.0/drake/R/console.R |only drake-2.0.0/drake/R/current.R |only drake-2.0.0/drake/R/debug.R |only drake-2.0.0/drake/R/dependencies.R |only drake-2.0.0/drake/R/deprecate.R |only drake-2.0.0/drake/R/envir.R |only drake-2.0.0/drake/R/examples.R | 98 -- drake-2.0.0/drake/R/find.R |only drake-2.0.0/drake/R/generate.R |only drake-2.0.0/drake/R/graph.R |only drake-2.0.0/drake/R/hash.R | 53 + drake-2.0.0/drake/R/make.R | 364 ++------ drake-2.0.0/drake/R/mclapply.R |only drake-2.0.0/drake/R/namespace.R | 22 drake-2.0.0/drake/R/plan.R | 84 + drake-2.0.0/drake/R/read.R |only drake-2.0.0/drake/R/status.R |only drake-2.0.0/drake/R/test.R |only drake-2.0.0/drake/R/timestamp.R | 45 - drake-2.0.0/drake/R/zzz.R | 2 drake-2.0.0/drake/build/vignette.rds |binary drake-2.0.0/drake/inst/doc/drake.R | 224 ---- drake-2.0.0/drake/inst/doc/drake.Rmd | 464 ---------- drake-2.0.0/drake/inst/doc/drake.html | 583 ------------- drake-2.0.0/drake/inst/doc/quickstart.R |only drake-2.0.0/drake/inst/doc/quickstart.Rmd |only drake-2.0.0/drake/inst/doc/quickstart.html |only drake-2.0.0/drake/inst/examples |only drake-2.0.0/drake/inst/logo.png |binary drake-2.0.0/drake/inst/timestamp.zip |only drake-2.0.0/drake/man/analyses.Rd | 26 drake-2.0.0/drake/man/as_file.Rd | 4 drake-2.0.0/drake/man/build_graph.Rd |only drake-2.0.0/drake/man/built.Rd | 4 drake-2.0.0/drake/man/cached.Rd | 35 drake-2.0.0/drake/man/check.Rd | 21 drake-2.0.0/drake/man/clean.Rd | 46 - drake-2.0.0/drake/man/default_system2_args.Rd |only drake-2.0.0/drake/man/evaluate.Rd | 58 - drake-2.0.0/drake/man/example_drake.Rd |only drake-2.0.0/drake/man/examples_drake.Rd |only drake-2.0.0/drake/man/expand.Rd | 21 drake-2.0.0/drake/man/find_cache.Rd | 3 drake-2.0.0/drake/man/find_project.Rd | 5 drake-2.0.0/drake/man/gather.Rd | 25 drake-2.0.0/drake/man/imported.Rd | 13 drake-2.0.0/drake/man/load_if_missing.Rd |only drake-2.0.0/drake/man/loadd.Rd | 28 drake-2.0.0/drake/man/make.Rd | 244 ++--- drake-2.0.0/drake/man/mk.Rd |only drake-2.0.0/drake/man/parallelism_choices.Rd |only drake-2.0.0/drake/man/plan.Rd | 48 - 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Title: Dive Analysis and Calibration
Description: Utilities to represent, visualize, filter, analyse, and summarize
time-depth recorder (TDR) data. Miscellaneous functions for
handling location data are also provided.
Author: Sebastian P. Luque <spluque@gmail.com>
Maintainer: Sebastian P. Luque <spluque@gmail.com>
Diff between diveMove versions 1.4.2 dated 2017-02-23 and 1.4.3 dated 2017-03-06
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 6 ++++++ R/diveStats.R | 5 +++-- inst/doc/diveMove.pdf |binary 5 files changed, 16 insertions(+), 9 deletions(-)
Title: Calculate the Proportion of Permutations in Line with an
Informative Hypothesis
Description: Allows for the easy computation of complexity: the proportion of the parameter space in line with the hypothesis by chance. The package comes with a Shiny application in which the calculations can be conducted as well.
Author: M. A. J. Zondervan-Zwijnenburg
Maintainer: M. A. J. Zondervan-Zwijnenburg <m.a.j.zwijnenburg@uu.nl>
Diff between complexity versions 1.0.0 dated 2017-01-21 and 1.1.0 dated 2017-03-06
DESCRIPTION | 10 +++++----- MD5 | 8 ++++++-- NAMESPACE | 1 + R/runShiny.R |only inst |only man/runShiny.Rd |only 6 files changed, 12 insertions(+), 7 deletions(-)
Title: Companion to Applied Linear Statistical Models
Description: Functions and Data set presented in Applied Linear Statistical Models Fifth Edition (Chapters 1-9 and 16-25), Michael H. Kutner; Christopher J. Nachtsheim; John Neter; William Li, 2005. (ISBN-10: 0071122214, ISBN-13: 978-0071122214) that do not exist in R, are gathered in this package. The whole book will be covered in the next versions.
Author: Ali Ghanbari <a.ghanbari541@gmail.com>
Maintainer: Ali Ghanbari <a.ghanbari541@gmail.com>
Diff between ALSM versions 0.1.9 dated 2017-02-03 and 0.2.0 dated 2017-03-06
DESCRIPTION | 6 +++--- MD5 | 16 +++++++++++++++- data/ComputerizedGame.rda |only data/HelicopterService.rda |only data/PremiumDistribution.rda |only data/QuestionnaireColor.rda |only data/RehabilitationTherapy.rda |only data/SolutionConcentration.rda |only data/TelephoneCommunications.rda |only man/ComputerizedGame.Rd |only man/HelicopterService.Rd |only man/PremiumDistribution.Rd |only man/QuestionnaireColor.Rd |only man/RehabilitationTherapy.Rd |only man/SolutionConcentration.Rd |only man/TelephoneCommunications.Rd |only 16 files changed, 18 insertions(+), 4 deletions(-)
Title: Prediction Error Curves for Risk Prediction Models in Survival
Analysis
Description: Validation of risk predictions obtained from survival models and
competing risk models based on censored data using inverse weighting and
cross-validation.
Author: Thomas A. Gerds
Maintainer: Thomas A. Gerds <tag@biostat.ku.dk>
Diff between pec versions 2.4.9 dated 2016-05-14 and 2.5.3 dated 2017-03-06
pec-2.4.9/pec/R/pseudo.bootstrapCrossValidation.R |only pec-2.4.9/pec/R/pseudoPecMethods.R |only pec-2.5.3/pec/DESCRIPTION | 12 - pec-2.5.3/pec/MD5 | 51 ++-- pec-2.5.3/pec/NAMESPACE | 2 pec-2.5.3/pec/R/CindexBootstrapCrossValidation.R | 6 pec-2.5.3/pec/R/CindexKFoldCrossValidation.R | 6 pec-2.5.3/pec/R/baselineHazard.coxph.R | 2 pec-2.5.3/pec/R/bootstrapCrossValidation.R | 2 pec-2.5.3/pec/R/calPlot.R | 80 ++++-- pec-2.5.3/pec/R/cindex.R | 6 pec-2.5.3/pec/R/crps.R | 52 ++-- pec-2.5.3/pec/R/kFoldCrossValidation.R | 2 pec-2.5.3/pec/R/pec-package.R | 2 pec-2.5.3/pec/R/pec.R | 108 ++++----- pec-2.5.3/pec/R/plot.calibrationPlot.R | 61 ++--- pec-2.5.3/pec/R/plotPredictEventProb.R | 3 pec-2.5.3/pec/R/predictEventProb.R | 27 +- pec-2.5.3/pec/R/reclass.R | 262 +++++++++++----------- pec-2.5.3/pec/R/survest.aalen.R | 2 pec-2.5.3/pec/R/survest.cox.aalen.R | 2 pec-2.5.3/pec/man/calPlot.Rd | 9 pec-2.5.3/pec/man/cindex.Rd | 2 pec-2.5.3/pec/man/pec.Rd | 4 pec-2.5.3/pec/man/plotPredictEventProb.Rd | 1 pec-2.5.3/pec/src/cindex.c | 2 pec-2.5.3/pec/src/declareRoutines.c |only pec-2.5.3/pec/src/pec.c | 2 28 files changed, 372 insertions(+), 336 deletions(-)
Title: Information Decomposition of Two-Phase Experiments
Description: The main purpose of this package is to generate the structure of the analysis of variance
(ANOVA) table of the two-phase experiments. The user only need to input the design and the
relationships of the random and fixed factors using the Wilkinson-Rogers' syntax,
this package can then quickly generate the structure of the ANOVA table with the
coefficients of the variance components for the expected mean squares.
Thus, the balanced incomplete block design and provides the efficiency
factors of the fixed effects can also be studied and compared much easily.
Author: Kevin Chang [aut, cre]
Maintainer: Kevin Chang <k.chang@auckland.ac.nz>
Diff between infoDecompuTE versions 0.5.1 dated 2013-02-04 and 0.6.0 dated 2017-03-06
infoDecompuTE-0.5.1/infoDecompuTE/R/blkProkMat.R |only infoDecompuTE-0.5.1/infoDecompuTE/R/getFixEF.onePhase.R |only infoDecompuTE-0.5.1/infoDecompuTE/R/getFixEF.twoPhase.R |only infoDecompuTE-0.5.1/infoDecompuTE/R/getIncidenceMatrix.R |only infoDecompuTE-0.5.1/infoDecompuTE/R/getReplicationList.R |only infoDecompuTE-0.5.1/infoDecompuTE/R/getVcCoefMS.onePhase.R |only infoDecompuTE-0.5.1/infoDecompuTE/R/getVcCoefMS.twoPhase.R |only infoDecompuTE-0.5.1/infoDecompuTE/R/m1.R |only infoDecompuTE-0.5.1/infoDecompuTE/R/mI.R |only infoDecompuTE-0.5.1/infoDecompuTE/R/mJ.R |only infoDecompuTE-0.5.1/infoDecompuTE/R/mK.R |only infoDecompuTE-0.5.1/infoDecompuTE/R/makeBlkDesMatrix.R |only infoDecompuTE-0.5.1/infoDecompuTE/R/makeBlockProjectors.R |only infoDecompuTE-0.5.1/infoDecompuTE/R/makeTreatProjectors.R |only infoDecompuTE-0.5.1/infoDecompuTE/R/trtProkMat.R |only infoDecompuTE-0.5.1/infoDecompuTE/man/blkProkMat.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/getFixEF.onePhase.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/getFixEF.twoPhase.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/getIncidenceMatrix.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/getReplicationList.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/getVMat.onePhase.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/getVMat.twoPhase.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/getVcCoefMS.onePhase.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/getVcCoefMS.twoPhase.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/m1.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/mI.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/mJ.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/mK.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/makeBlkDesMatrix.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/makeBlockProjectors.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/makeTreatProjectors.Rd |only infoDecompuTE-0.5.1/infoDecompuTE/man/trtProkMat.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/DESCRIPTION | 40 - infoDecompuTE-0.6.0/infoDecompuTE/MD5 | 105 +-- infoDecompuTE-0.6.0/infoDecompuTE/NAMESPACE | 30 infoDecompuTE-0.6.0/infoDecompuTE/NEWS.md |only infoDecompuTE-0.6.0/infoDecompuTE/R/J.R |only infoDecompuTE-0.6.0/infoDecompuTE/R/K.R |only infoDecompuTE-0.6.0/infoDecompuTE/R/adjustEffectNames.r |only infoDecompuTE-0.6.0/infoDecompuTE/R/adjustMissingLevels.r |only infoDecompuTE-0.6.0/infoDecompuTE/R/getCoefVC.onePhase.R |only infoDecompuTE-0.6.0/infoDecompuTE/R/getCoefVC.twoPhase.R |only infoDecompuTE-0.6.0/infoDecompuTE/R/getEffFactor.R |only infoDecompuTE-0.6.0/infoDecompuTE/R/getFixedEF.onePhase.R |only infoDecompuTE-0.6.0/infoDecompuTE/R/getFixedEF.twoPhase.R |only infoDecompuTE-0.6.0/infoDecompuTE/R/getTrtCoef.R | 39 - infoDecompuTE-0.6.0/infoDecompuTE/R/getTrtRep.R |only infoDecompuTE-0.6.0/infoDecompuTE/R/getVMat.onePhase.R | 41 - infoDecompuTE-0.6.0/infoDecompuTE/R/getVMat.twoPhase.R | 40 - infoDecompuTE-0.6.0/infoDecompuTE/R/identityMat.R |only infoDecompuTE-0.6.0/infoDecompuTE/R/infoDecompMat.R |only infoDecompuTE-0.6.0/infoDecompuTE/R/invInfMat.R | 27 infoDecompuTE-0.6.0/infoDecompuTE/R/makeBlkDesMat.R |only infoDecompuTE-0.6.0/infoDecompuTE/R/makeContrMat.R |only infoDecompuTE-0.6.0/infoDecompuTE/R/makeOrthProjectors.R |only infoDecompuTE-0.6.0/infoDecompuTE/R/makeOverDesMat.R |only infoDecompuTE-0.6.0/infoDecompuTE/R/projMat.R | 23 infoDecompuTE-0.6.0/infoDecompuTE/R/summaryAovOnePhase.R | 174 +++-- infoDecompuTE-0.6.0/infoDecompuTE/R/summaryAovTwoPhase.R | 320 ++++++--- infoDecompuTE-0.6.0/infoDecompuTE/R/toLatexTable.r | 337 +++++----- infoDecompuTE-0.6.0/infoDecompuTE/R/tr.R | 23 infoDecompuTE-0.6.0/infoDecompuTE/R/unity.R |only infoDecompuTE-0.6.0/infoDecompuTE/README.md |only infoDecompuTE-0.6.0/infoDecompuTE/man/J.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/K.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/adjustEffectNames.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/adjustMissingLevels.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/getCoefVC.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/getEffFactor.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/getFixedEF.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/getTrtCoef.Rd | 90 +- infoDecompuTE-0.6.0/infoDecompuTE/man/getTrtRep.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/getVMat.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/identityMat.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/infoDecompMat.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/infoDecompuTE-package.Rd | 54 - infoDecompuTE-0.6.0/infoDecompuTE/man/invInfMat.Rd | 72 +- infoDecompuTE-0.6.0/infoDecompuTE/man/makeBlkDesMat.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/makeContrMat.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/makeOrthProjectors.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/makeOverDesMat.Rd |only infoDecompuTE-0.6.0/infoDecompuTE/man/projMat.Rd | 28 infoDecompuTE-0.6.0/infoDecompuTE/man/summaryAovOnePhase.Rd | 172 ++--- infoDecompuTE-0.6.0/infoDecompuTE/man/summaryAovTwoPhase.Rd | 111 ++- infoDecompuTE-0.6.0/infoDecompuTE/man/toLatexTable.rd | 60 + infoDecompuTE-0.6.0/infoDecompuTE/man/tr.Rd | 38 - infoDecompuTE-0.6.0/infoDecompuTE/man/unity.Rd |only 87 files changed, 1142 insertions(+), 682 deletions(-)
Title: Generate Functions to Get or Set Global Options
Description: It provides more controls on the option values such as validation
and filtering on the values, making options invisible or private.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Diff between GlobalOptions versions 0.0.10 dated 2016-04-17 and 0.0.11 dated 2017-03-06
DESCRIPTION | 8 ++++---- MD5 | 20 ++++++++++---------- NAMESPACE | 2 +- NEWS | 8 ++++++++ R/class.R | 4 +++- R/setGlobalOptions.R | 17 ++++++++++++----- build/vignette.rds |binary inst/doc/GlobalOptions.html | 14 +++++++------- man/Assign.GlobalOptionsFun.rd | 8 ++++---- man/Subset.GlobalOptionsFun.rd | 7 +++---- tests/testthat/test.R | 7 ++++++- 11 files changed, 58 insertions(+), 37 deletions(-)
Title: A Set of R6 Classes & a Shiny Application for Reducing Elemental
LA-ICPMS Data from Solid Structures
Description: Aims to facilitate the reduction of elemental microchemistry data from solid-phase LA-ICPMS analysis (laser ablation inductive coupled plasma mass spectrometry). The elementR package provides a reactive and user friendly interface for conducting all steps needed for an optimal data reduction while leaving maximum control for user.
Author: Charlotte Sirot, Francois Guilhaumon
Maintainer: Charlotte Sirot <charlott.sirot@gmail.com>
Diff between elementR versions 1.2 dated 2016-12-14 and 1.3.0 dated 2017-03-06
elementR-1.2/elementR/inst/Results/Machine_Drift_3_&_Sup1.jpg |only elementR-1.2/elementR/inst/Results/samples/Sample_1/graphics |only elementR-1.2/elementR/inst/Results/standards/Stand1.csv/graphics |only elementR-1.3.0/elementR/DESCRIPTION | 21 elementR-1.3.0/elementR/MD5 | 156 elementR-1.3.0/elementR/NAMESPACE | 6 elementR-1.3.0/elementR/R/App.R |20021 +++++----- elementR-1.3.0/elementR/R/classElementR_R6.R | 1015 elementR-1.3.0/elementR/README.md |only elementR-1.3.0/elementR/inst/Results/Example_Session.RData |binary elementR-1.3.0/elementR/inst/Results/SummarySettings.csv | 18 elementR-1.3.0/elementR/inst/Results/SummaryStandard.csv | 16 elementR-1.3.0/elementR/inst/Results/regression_parameters.csv | 44 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Blank_Sample1_Rep1.csv.csv | 1 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_ConcCorr_Sample1_Rep1.csv.csv | 201 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Conc_Sample1_Rep1.csv.csv | 201 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Norm_Sample1_Rep1.csv.csv | 201 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_Plateau_Sample1_Rep1.csv.csv | 7 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_SupLOD_Sample1_Rep1.csv.csv | 201 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep1.csv/data_SuppBlank_Sample1_Rep1.csv.csv | 201 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Blank_Sample1_Rep2.csv.csv | 1 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_ConcCorr_Sample1_Rep2.csv.csv | 203 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Conc_Sample1_Rep2.csv.csv | 203 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Norm_Sample1_Rep2.csv.csv | 203 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_Plateau_Sample1_Rep2.csv.csv | 7 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_SupLOD_Sample1_Rep2.csv.csv | 203 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep2.csv/data_SuppBlank_Sample1_Rep2.csv.csv | 203 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Blank_Sample1_Rep3.csv.csv | 2 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_ConcCorr_Sample1_Rep3.csv.csv | 201 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Conc_Sample1_Rep3.csv.csv | 201 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Norm_Sample1_Rep3.csv.csv | 201 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_Plateau_Sample1_Rep3.csv.csv | 7 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_SupLOD_Sample1_Rep3.csv.csv | 201 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/Sample1_Rep3.csv/data_SuppBlank_Sample1_Rep3.csv.csv | 201 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/finalCorr_Sample_1.csv |only elementR-1.3.0/elementR/inst/Results/samples/Sample_1/finalReplicates_Sample1_Rep1.csv.csv | 201 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/finalReplicates_Sample1_Rep2.csv.csv | 203 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/finalReplicates_Sample1_Rep3.csv.csv | 201 elementR-1.3.0/elementR/inst/Results/samples/Sample_1/final_Sample_1.csv | 205 elementR-1.3.0/elementR/inst/Results/samples/Sample_2 |only elementR-1.3.0/elementR/inst/Results/standards/Stand1.csv/data_Blank_Stand1.csv.csv | 1 elementR-1.3.0/elementR/inst/Results/standards/Stand1.csv/data_Norm_Stand1.csv.csv | 70 elementR-1.3.0/elementR/inst/Results/standards/Stand1.csv/data_OutlierFree_Stand1.csv.csv | 72 elementR-1.3.0/elementR/inst/Results/standards/Stand1.csv/data_SupLOD_Stand1.csv.csv | 70 elementR-1.3.0/elementR/inst/Results/standards/Stand1.csv/data_SuppBlank_Stand1.csv.csv | 70 elementR-1.3.0/elementR/inst/Results/standards/Stand2.ods/data_Blank_Stand2.ods.csv | 2 elementR-1.3.0/elementR/inst/Results/standards/Stand2.ods/data_Norm_Stand2.ods.csv | 70 elementR-1.3.0/elementR/inst/Results/standards/Stand2.ods/data_OutlierFree_Stand2.ods.csv | 72 elementR-1.3.0/elementR/inst/Results/standards/Stand2.ods/data_SupLOD_Stand2.ods.csv | 70 elementR-1.3.0/elementR/inst/Results/standards/Stand2.ods/data_SuppBlank_Stand2.ods.csv | 70 elementR-1.3.0/elementR/inst/Results/standards/Stand3.xls/data_Blank_Stand3.xls.csv | 1 elementR-1.3.0/elementR/inst/Results/standards/Stand3.xls/data_Norm_Stand3.xls.csv | 67 elementR-1.3.0/elementR/inst/Results/standards/Stand3.xls/data_OutlierFree_Stand3.xls.csv | 69 elementR-1.3.0/elementR/inst/Results/standards/Stand3.xls/data_Plateau_Stand3.xls.csv | 5 elementR-1.3.0/elementR/inst/Results/standards/Stand3.xls/data_SupLOD_Stand3.xls.csv | 67 elementR-1.3.0/elementR/inst/Results/standards/Stand3.xls/data_SuppBlank_Stand3.xls.csv | 67 elementR-1.3.0/elementR/inst/elementR_documentation.pdf |binary elementR-1.3.0/elementR/inst/www/elementR.css |only elementR-1.3.0/elementR/man/elementR_data.Rd | 9 elementR-1.3.0/elementR/man/elementR_project.Rd | 9 elementR-1.3.0/elementR/man/elementR_rep.Rd | 4 elementR-1.3.0/elementR/man/elementR_repSample.Rd | 10 elementR-1.3.0/elementR/man/elementR_sample.Rd | 7 elementR-1.3.0/elementR/man/elementR_standard.Rd | 4 elementR-1.3.0/elementR/man/readData.Rd | 2 elementR-1.3.0/elementR/tests |only 66 files changed, 13882 insertions(+), 12163 deletions(-)
Title: Product-Limit Estimation for Censored Event History Analysis
Description: Fast and user friendly implementation of nonparametric estimators
for censored event history (survival) analysis. Kaplan-Meier and
Aalen-Johansen method.
Author: Thomas A. Gerds
Maintainer: Thomas A. Gerds <tag@biostat.ku.dk>
Diff between prodlim versions 1.5.9 dated 2017-01-14 and 1.6.1 dated 2017-03-06
DESCRIPTION | 6 +-- MD5 | 45 +++++++++++----------- NAMESPACE | 2 - R/IntIndex.R | 4 +- R/atRisk.R | 4 +- R/confInt.R | 6 +-- R/iindex.R | 4 +- R/markTime.R | 2 - R/neighborhood.R | 4 +- R/plot.prodlim.R | 100 +++++++++++++++++++++++++------------------------- R/prodlim-package.R | 6 +-- R/prodlim.R | 78 +++++++++++++++++++-------------------- R/prodlimIcensSurv.R | 6 +-- R/quantile.prodlim.R | 71 ++++++++++++++++++----------------- R/sindex.R | 2 - man/atRisk.Rd | 4 +- man/confInt.Rd | 6 +-- man/markTime.Rd | 2 - src/IntIndex.c | 2 - src/declareRoutines.c |only src/iindex.c | 2 - src/neighborhood.c | 4 +- src/prodlim.c | 30 --------------- src/sindex.c | 2 - 24 files changed, 183 insertions(+), 209 deletions(-)
Title: Moment and Inverse Moment Bayes Factors
Description: Model selection and parameter estimation based on non-local and Zellner priors. Bayes factors, marginal densities and variable selection in regression setups. Routines to sample, evaluate prior densities, distribution functions and quantiles are included.
Author: David Rossell, John D. Cook, Donatello Telesca, P. Roebuck
Maintainer: David Rossell <rosselldavid@gmail.com>
Diff between mombf versions 1.8.3 dated 2016-11-18 and 1.9.2 dated 2017-03-06
DESCRIPTION | 8 MD5 | 28 +- NAMESPACE | 2 R/modelSelection.R | 14 - R/nlpMarginal.R | 62 +++-- inst/doc/mombf.Rnw | 6 inst/doc/mombf.pdf |binary man/modelSelection.Rd | 22 +- man/nlpMarginals.Rd | 8 src/cstat.cpp | 504 +++++++++++++++++++++++------------------------ src/do_mombf.h | 37 ++- src/modelSel.cpp | 356 ++++++++++++++++++++++----------- src/modelSel.h | 9 vignettes/mombf.Rnw | 6 vignettes/references.bib | 193 +++++++++-------- 15 files changed, 724 insertions(+), 531 deletions(-)
Title: Tools for Two-Dimensional Monte-Carlo Simulations
Description: A complete framework to build and study Two-Dimensional Monte-Carlo simulations, aka Second-Order Monte-Carlo simulations. Also includes various distributions (pert, triangular, Bernoulli, empirical discrete and continuous).
Author: Regis Pouillot [aut, cre],
Marie-Laure Delignette-Muller [ctb],
Jean-Baptiste Denis [ctb]
Maintainer: Regis Pouillot <rpouillot@yahoo.fr>
Diff between mc2d versions 0.1-17 dated 2016-10-12 and 0.1-18 dated 2017-03-06
DESCRIPTION | 12 ++++++------ MD5 | 22 +++++++++++----------- R/converg.R | 2 +- R/hist.mc.R | 2 +- R/mcmodel.R | 2 +- R/mcmodelcut.R | 2 +- R/mcratio.R | 2 +- R/plot.mc.R | 2 +- R/quantile.mc.R | 2 +- build/vignette.rds |binary data/ec.rda |binary inst/NEWS | 7 +++++++ 12 files changed, 31 insertions(+), 24 deletions(-)
Title: Parametric Time Warping
Description: Parametric Time Warping aligns patterns, i.e. it aims to
put corresponding features at the same locations. The algorithm
searches for an optimal polynomial describing the warping. It
is possible to align one sample to a reference, several samples
to the same reference, or several samples to several
references. One can choose between calculating individual
warpings, or one global warping for a set of samples and one
reference. Two optimization criteria are implemented: RMS (Root
Mean Square error) and WCC (Weighted Cross Correlation). Both
warping of peak profiles and of peak lists are supported.
Author: Jan Gerretzen <j.gerretzen@science.ru.nl>, Paul Eilers
<p.eilers@erasmusmc.nl>, Hans Wouters, Tom Bloemberg
<t.bloemberg@science.ru.nl>, Ron Wehrens <ron.wehrens@gmail.com>
Maintainer: Ron Wehrens <ron.wehrens@gmail.com>
Diff between ptw versions 1.9-11 dated 2015-08-21 and 1.9-12 dated 2017-03-06
DESCRIPTION | 6 +++--- MD5 | 15 ++++++++------- NAMESPACE | 2 +- R/wccStick.R | 8 ++++---- build/vignette.rds |binary inst/doc/stickPTW.Rnw | 44 ++++++++++++++++++++++---------------------- inst/doc/stickPTW.pdf |binary src/register.c |only vignettes/stickPTW.Rnw | 44 ++++++++++++++++++++++---------------------- 9 files changed, 60 insertions(+), 59 deletions(-)
Title: Extracts Sentiment and Sentiment-Derived Plot Arcs from Text
Description: Extracts sentiment and sentiment-derived plot arcs
from text using three sentiment dictionaries conveniently
packaged for consumption by R users. Implemented dictionaries include
"syuzhet" (default) developed in the Nebraska Literary Lab
"afinn" developed by Finn {\AA}rup Nielsen, "bing" developed by Minqing Hu
and Bing Liu, and "nrc" developed by Mohammad, Saif M. and Turney, Peter D.
Applicable references are available in README.md and in the documentation
for the "get_sentiment" function. The package also provides a hack for
implementing Stanford's coreNLP sentiment parser. The package provides
several methods for plot arc normalization.
Author: Matthew Jockers [aut, cre]
Maintainer: Matthew Jockers <mjockers@gmail.com>
Diff between syuzhet versions 1.0.0 dated 2016-04-27 and 1.0.1 dated 2017-03-06
DESCRIPTION | 8 ++-- MD5 | 11 +++-- NAMESPACE | 1 R/syuzhet.R | 76 +++++++++++++++++++++++++++------------- build/vignette.rds |binary man/get_sentiment_dictionary.Rd |only man/simple_plot.Rd | 11 ++++- 7 files changed, 71 insertions(+), 36 deletions(-)
Title: Collection of Convenient Functions for Common Statistical
Computations
Description: Collection of convenient functions for common statistical computations,
which are not directly provided by R's base or stats packages.
This package aims at providing, first, shortcuts for statistical
measures, which otherwise could only be calculated with additional
effort (like standard errors or root mean squared errors). Second,
these shortcut functions are generic (if appropriate), and can be
applied not only to vectors, but also to other objects as well
(e.g., the Coefficient of Variation can be computed for vectors,
linear models, or linear mixed models; the r2()-function returns
the r-squared value for 'lm', 'glm', 'merMod' or 'lme' objects).
The focus of most functions lies on summary statistics or fit
measures for regression models, including generalized linear
models and mixed effects models. However, some of the functions
also deal with other statistical measures, like Cronbach's Alpha,
Cramer's V, Phi etc.
Author: Daniel Lüdecke <d.luedecke@uke.de>
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjstats versions 0.8.0 dated 2017-02-03 and 0.9.0 dated 2017-03-06
sjstats-0.8.0/sjstats/R/std.R |only sjstats-0.8.0/sjstats/man/phi.Rd |only sjstats-0.8.0/sjstats/man/std.Rd |only sjstats-0.9.0/sjstats/DESCRIPTION | 16 sjstats-0.9.0/sjstats/MD5 | 106 ++-- sjstats-0.9.0/sjstats/NAMESPACE | 334 +++++++-------- sjstats-0.9.0/sjstats/NEWS | 18 sjstats-0.9.0/sjstats/NEWS.md | 21 sjstats-0.9.0/sjstats/R/S3-methods.R | 41 + sjstats-0.9.0/sjstats/R/internal_consistency.R | 525 +++++++++++------------ sjstats-0.9.0/sjstats/R/nhanes_sample.R |only sjstats-0.9.0/sjstats/R/phi.R | 64 -- sjstats-0.9.0/sjstats/R/prop.R | 396 +++++++++-------- sjstats-0.9.0/sjstats/R/pseudo_r2.R | 555 ++++++++++++------------- sjstats-0.9.0/sjstats/R/se.R | 547 ++++++++++++------------ sjstats-0.9.0/sjstats/R/svyglmnb.R |only sjstats-0.9.0/sjstats/R/xtab_statistics.R |only sjstats-0.9.0/sjstats/README.md | 90 ++-- sjstats-0.9.0/sjstats/build/partial.rdb |binary sjstats-0.9.0/sjstats/data/nhanes_sample.RData |only sjstats-0.9.0/sjstats/man/boot_ci.Rd | 246 +++++------ sjstats-0.9.0/sjstats/man/bootstrap.Rd | 160 +++---- sjstats-0.9.0/sjstats/man/check_assumptions.Rd | 282 ++++++------ sjstats-0.9.0/sjstats/man/chisq_gof.Rd | 118 ++--- sjstats-0.9.0/sjstats/man/cod.Rd | 90 ++-- sjstats-0.9.0/sjstats/man/converge_ok.Rd | 104 ++-- sjstats-0.9.0/sjstats/man/cv.Rd | 122 ++--- sjstats-0.9.0/sjstats/man/deff.Rd | 84 +-- sjstats-0.9.0/sjstats/man/efc.Rd | 66 +- sjstats-0.9.0/sjstats/man/eta_sq.Rd | 84 +-- sjstats-0.9.0/sjstats/man/get_model_pval.Rd | 108 ++-- sjstats-0.9.0/sjstats/man/hoslem_gof.Rd | 86 +-- sjstats-0.9.0/sjstats/man/icc.Rd | 244 +++++----- sjstats-0.9.0/sjstats/man/inequ_trend.Rd | 140 +++--- sjstats-0.9.0/sjstats/man/levene_test.Rd | 42 - sjstats-0.9.0/sjstats/man/mean_n.Rd | 138 +++--- sjstats-0.9.0/sjstats/man/mwu.Rd | 104 ++-- sjstats-0.9.0/sjstats/man/nhanes_sample.Rd |only sjstats-0.9.0/sjstats/man/odds_to_rr.Rd | 122 ++--- sjstats-0.9.0/sjstats/man/overdisp.Rd | 146 +++--- sjstats-0.9.0/sjstats/man/pred_accuracy.Rd | 112 ++--- sjstats-0.9.0/sjstats/man/pred_vars.Rd | 76 +-- sjstats-0.9.0/sjstats/man/prop.Rd | 156 +++---- sjstats-0.9.0/sjstats/man/r2.Rd | 233 +++++----- sjstats-0.9.0/sjstats/man/re_var.Rd | 124 ++--- sjstats-0.9.0/sjstats/man/reliab_test.Rd | 312 +++++++------- sjstats-0.9.0/sjstats/man/rmse.Rd | 152 +++--- sjstats-0.9.0/sjstats/man/robust.Rd | 164 +++---- sjstats-0.9.0/sjstats/man/se.Rd | 252 ++++++----- sjstats-0.9.0/sjstats/man/se_ybar.Rd | 58 +- sjstats-0.9.0/sjstats/man/sjstats-package.Rd | 42 + sjstats-0.9.0/sjstats/man/smpsize_lmm.Rd | 128 ++--- sjstats-0.9.0/sjstats/man/std_beta.Rd | 136 +++--- sjstats-0.9.0/sjstats/man/svyglm.nb.Rd |only sjstats-0.9.0/sjstats/man/table_values.Rd | 72 +-- sjstats-0.9.0/sjstats/man/var_pop.Rd | 78 +-- sjstats-0.9.0/sjstats/man/weight.Rd | 114 ++--- sjstats-0.9.0/sjstats/man/wtd_sd.Rd | 66 +- sjstats-0.9.0/sjstats/man/xtab_statistics.Rd |only 59 files changed, 3807 insertions(+), 3667 deletions(-)
Title: R Interface to the Vowpal Wabbit
Description: The 'Vowpal Wabbit' project is a fast out-of-core learning
system sponsored by Microsoft Research (having started at Yahoo! Research)
and written by John Langford along with a number of contributors. This R
package does not include the distributed computing implementation of the
cluster/ directory of the upstream sources. Use of the software as a network
service is also not directly supported as the aim is a simpler direct call
from R for validation and comparison.
Author: Dirk Eddelbuettel <edd@debian.org>
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RVowpalWabbit versions 0.0.8 dated 2016-10-17 and 0.0.9 dated 2017-03-06
ChangeLog | 12 ++++++ DESCRIPTION | 8 ++-- MD5 | 13 ++++-- NAMESPACE | 4 +- R/RcppExports.R |only R/vw.R | 2 - src/R_vw.cpp | 100 +++++++++++++++++++++++----------------------------- src/RcppExports.cpp |only src/init.c |only 9 files changed, 73 insertions(+), 66 deletions(-)
Title: Access to the Gitlab API
Description: Provides R functions to access the API of the project and
repository management web application gitlab. For many common tasks (repository
file access, issue assignment and status, commenting) convenience wrappers
are provided, and in addition the full API can be used by specifying request
locations. Gitlab is open-source software and can be self-hosted or used on
gitlab.com.
Author: Jirka Lewandowski [aut, cre]
Maintainer: Jirka Lewandowski <jirka.lewandowski@wzb.eu>
Diff between gitlabr versions 0.6.4 dated 2016-02-09 and 0.7 dated 2017-03-06
gitlabr-0.6.4/gitlabr/man/archive.Rd |only gitlabr-0.6.4/gitlabr/man/comments.Rd |only gitlabr-0.6.4/gitlabr/man/create_merge_request.Rd |only gitlabr-0.6.4/gitlabr/man/edit_issue.Rd |only gitlabr-0.6.4/gitlabr/man/get_commits.Rd |only gitlabr-0.6.4/gitlabr/man/get_file.Rd |only gitlabr-0.6.4/gitlabr/man/get_issues.Rd |only gitlabr-0.6.4/gitlabr/man/get_project_id.Rd |only gitlabr-0.6.4/gitlabr/man/gitlab_connection.Rd |only gitlabr-0.6.4/gitlabr/man/list_projects.Rd |only gitlabr-0.6.4/gitlabr/man/proj_req.Rd |only gitlabr-0.6.4/gitlabr/man/push_file.Rd |only gitlabr-0.6.4/gitlabr/man/repository.Rd |only gitlabr-0.6.4/gitlabr/man/to_issue_id.Rd |only gitlabr-0.7/gitlabr/DESCRIPTION | 19 +- gitlabr-0.7/gitlabr/MD5 | 78 ++++++------ gitlabr-0.7/gitlabr/NAMESPACE | 50 +++++++ gitlabr-0.7/gitlabr/NEWS.md |only gitlabr-0.7/gitlabr/R/ci.R |only gitlabr-0.7/gitlabr/R/comments.R | 60 ++++----- gitlabr-0.7/gitlabr/R/connect.R | 23 ++- gitlabr-0.7/gitlabr/R/gitlab_api.R | 35 +++-- gitlabr-0.7/gitlabr/R/gitlabr-package.R | 6 gitlabr-0.7/gitlabr/R/global_env.R | 6 gitlabr-0.7/gitlabr/R/issues.R | 74 ++++++----- gitlabr-0.7/gitlabr/R/legacy_headers.R |only gitlabr-0.7/gitlabr/R/projects_and_repos.R | 116 ++++++++++-------- gitlabr-0.7/gitlabr/R/shiny_module_login.R |only gitlabr-0.7/gitlabr/R/update_code.R |only gitlabr-0.7/gitlabr/build/vignette.rds |binary gitlabr-0.7/gitlabr/data |only gitlabr-0.7/gitlabr/inst/doc/quick-start-gitlabr.pdf |binary gitlabr-0.7/gitlabr/man/branches.Rd | 18 +- gitlabr-0.7/gitlabr/man/gitlab.Rd | 8 - gitlabr-0.7/gitlabr/man/gitlabci.Rd |only gitlabr-0.7/gitlabr/man/gitlabr-deprecated.Rd |only gitlabr-0.7/gitlabr/man/gitlabr.Rd | 9 - gitlabr-0.7/gitlabr/man/gitlabr_0_7_renaming.Rd |only gitlabr-0.7/gitlabr/man/gl_archive.Rd |only gitlabr-0.7/gitlabr/man/gl_builds.Rd |only gitlabr-0.7/gitlabr/man/gl_comments.Rd |only gitlabr-0.7/gitlabr/man/gl_connection.Rd |only gitlabr-0.7/gitlabr/man/gl_create_merge_request.Rd |only gitlabr-0.7/gitlabr/man/gl_edit_issue.Rd |only gitlabr-0.7/gitlabr/man/gl_get_commits.Rd |only gitlabr-0.7/gitlabr/man/gl_get_file.Rd |only gitlabr-0.7/gitlabr/man/gl_get_project_id.Rd |only gitlabr-0.7/gitlabr/man/gl_list_issues.Rd |only gitlabr-0.7/gitlabr/man/gl_list_projects.Rd |only gitlabr-0.7/gitlabr/man/gl_proj_req.Rd |only gitlabr-0.7/gitlabr/man/gl_push_file.Rd |only gitlabr-0.7/gitlabr/man/gl_repository.Rd |only gitlabr-0.7/gitlabr/man/gl_shiny_login.Rd |only gitlabr-0.7/gitlabr/man/gl_to_issue_id.Rd |only gitlabr-0.7/gitlabr/man/iff.Rd | 3 gitlabr-0.7/gitlabr/man/pipe_into.Rd | 3 gitlabr-0.7/gitlabr/man/prefix.Rd | 3 gitlabr-0.7/gitlabr/man/set_gitlab_connection.Rd | 9 - gitlabr-0.7/gitlabr/man/update_gitlabr_code.Rd |only gitlabr-0.7/gitlabr/vignettes/quick-start-gitlabr.Rmd | 108 +++++++++------- 60 files changed, 367 insertions(+), 261 deletions(-)
Title: Analysing Remotely Sensed Forest Data
Description: Forest Tools provides functions for analyzing remotely sensed forest data.
Author: Andrew Plowright
Maintainer: Andrew Plowright <andrew.plowright@alumni.ubc.ca>
Diff between ForestTools versions 0.1.0 dated 2017-01-21 and 0.1.1 dated 2017-03-06
ForestTools-0.1.0/ForestTools/R/TreeTopSummary.R |only ForestTools-0.1.0/ForestTools/man/TreeTopSummary.Rd |only ForestTools-0.1.0/ForestTools/tests/testthat/inCHM.Rda |only ForestTools-0.1.0/ForestTools/tests/testthat/inTiles.Rda |only ForestTools-0.1.0/ForestTools/tests/testthat/test_TreeTopSummary.R |only ForestTools-0.1.0/ForestTools/tests/testthat/trees.Rda |only ForestTools-0.1.1/ForestTools/DESCRIPTION | 11 ForestTools-0.1.1/ForestTools/MD5 | 56 +- ForestTools-0.1.1/ForestTools/NAMESPACE | 2 ForestTools-0.1.1/ForestTools/NEWS.md | 6 ForestTools-0.1.1/ForestTools/R/ForestTools.R | 4 ForestTools-0.1.1/ForestTools/R/Kootenay.R | 23 - ForestTools-0.1.1/ForestTools/R/SegmentCrowns.R | 188 ++++++---- ForestTools-0.1.1/ForestTools/R/SpatialStatistics.R |only ForestTools-0.1.1/ForestTools/R/TreeTopFinder.R | 27 - ForestTools-0.1.1/ForestTools/data/kootenayCrowns.rda |only ForestTools-0.1.1/ForestTools/data/kootenayTrees.rda |binary ForestTools-0.1.1/ForestTools/inst/doc/treetopAnalysis.R | 76 ++-- ForestTools-0.1.1/ForestTools/inst/doc/treetopAnalysis.Rmd | 150 ++++--- ForestTools-0.1.1/ForestTools/inst/doc/treetopAnalysis.html | 166 ++++---- ForestTools-0.1.1/ForestTools/man/ForestTools.Rd | 4 ForestTools-0.1.1/ForestTools/man/SegmentCrowns.Rd | 45 +- ForestTools-0.1.1/ForestTools/man/SpatialStatistics.Rd |only ForestTools-0.1.1/ForestTools/man/TreeTopFinder.Rd | 25 - ForestTools-0.1.1/ForestTools/man/kootenayBlocks.Rd | 4 ForestTools-0.1.1/ForestTools/man/kootenayCHM.Rd | 2 ForestTools-0.1.1/ForestTools/man/kootenayCrowns.Rd |only ForestTools-0.1.1/ForestTools/man/kootenayTrees.Rd | 4 ForestTools-0.1.1/ForestTools/tests/testthat/orphanCHM.Rda |only ForestTools-0.1.1/ForestTools/tests/testthat/orphantrees.Rda |only ForestTools-0.1.1/ForestTools/tests/testthat/testCHM.Rda |only ForestTools-0.1.1/ForestTools/tests/testthat/testCHMtiles.Rda |only ForestTools-0.1.1/ForestTools/tests/testthat/testTrees.Rda |only ForestTools-0.1.1/ForestTools/tests/testthat/test_SegmentCrowns.R | 68 +-- ForestTools-0.1.1/ForestTools/tests/testthat/test_SpatialStatistics.R |only ForestTools-0.1.1/ForestTools/tests/testthat/test_TreeTopFinder.R | 22 - ForestTools-0.1.1/ForestTools/vignettes/treetopAnalysis.Rmd | 150 ++++--- 37 files changed, 582 insertions(+), 451 deletions(-)
Title: Emoji and Font Awesome in Graphics
Description: An implementation of using emoji and fontawesome for using in both base and 'ggplot2' graphics.
Author: Guangchuang Yu [aut, cre]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Diff between emojifont versions 0.4.0 dated 2017-02-15 and 0.4.1 dated 2017-03-06
DESCRIPTION | 8 MD5 | 26 +-- NEWS | 7 R/emojifont.R | 4 R/geom_emoji.R | 7 R/sysdata.rda |binary R/zzz.R |only README.md | 1 inst/doc/emojifont.R | 17 -- inst/doc/emojifont.Rmd | 28 +-- inst/doc/emojifont.html | 346 +++++++++++++++++------------------------- inst/emoji_fonts/EmojiOne.ttf |only man/geom_emoji.Rd | 4 man/load.emojifont.Rd | 2 vignettes/emojifont.Rmd | 28 +-- 15 files changed, 215 insertions(+), 263 deletions(-)
Title: Exploratory Data Analysis using Random Forests
Description: Functions useful for exploratory data analysis
using random forests which can be used to compute multivariate partial
dependence, observation, class, and variable-wise marginal and joint permutation
importance as well as observation-specific measures of distance
(supervised or unsupervised). All of the aforementioned functions are
accompanied by 'ggplot2' plotting functions.
Author: Zachary M. Jones <zmj@zmjones.com> and Fridolin Linder
<fridolin.linder@gmail.com>
Maintainer: Zachary M. Jones <zmj@zmjones.com>
Diff between edarf versions 1.1.0 dated 2016-11-30 and 1.1.1 dated 2017-03-06
DESCRIPTION | 10 +- LICENSE | 2 MD5 | 36 +++++----- NAMESPACE | 1 R/imp.R | 82 +++++++++++------------ R/pd.R | 156 +++++++++++++++++++++------------------------ R/plot.R | 150 +++++++++++++++++++++---------------------- R/prox.R | 32 ++++----- R/utils.R | 77 +++++++--------------- build/vignette.rds |binary inst/doc/edarf.html | 50 +++++++------- man/extract_proximity.Rd | 5 - man/partial_dependence.Rd | 13 +-- man/plot_imp.Rd | 5 - man/plot_pd.Rd | 5 - man/plot_pred.Rd | 5 - man/plot_prox.Rd | 13 +-- man/variable_importance.Rd | 3 tests/testthat/test_pd.R | 24 +++--- 19 files changed, 315 insertions(+), 354 deletions(-)
Title: Functions for Dyadic Sequence Analyses
Description: Functions for dyadic binary/dichotomous sequence analyses are implemented in this contribution.
The focus is on estimating actor-partner-interaction models using various approaches, for
instances the approach of Bakeman & Gottman's (1997) <DOI:10.1017/cbo9780511527685>,
generalized multi-level models, and basic Markov models. Moreover, coefficients of one model
can be translated into those of the other models. Finally, simulation-based power analyses are
provided.
Author: Peter Fuchs
Maintainer: Peter Fuchs <Pete.Fuchs@gmail.com>
Diff between DySeq versions 0.13 dated 2016-04-18 and 0.22 dated 2017-03-06
DySeq-0.13/DySeq/R/Imports.R |only DySeq-0.22/DySeq/DESCRIPTION | 23 +++++---- DySeq-0.22/DySeq/MD5 | 67 ++++++++++++++++----------- DySeq-0.22/DySeq/NAMESPACE | 12 ++-- DySeq-0.22/DySeq/R/APIMtoTrans.R |only DySeq-0.22/DySeq/R/Basic_Markov_as_APIM.R |only DySeq-0.22/DySeq/R/LogSeq.R | 7 ++ DySeq-0.22/DySeq/R/MLAP_Trans.R |only DySeq-0.22/DySeq/R/ML_Trans.R |only DySeq-0.22/DySeq/R/StateTrans.R | 3 + DySeq-0.22/DySeq/R/TransToAPIM.R |only DySeq-0.22/DySeq/R/data.R | 38 +++++++++++++++ DySeq-0.22/DySeq/R/plot.LogSeq.R | 8 +-- DySeq-0.22/DySeq/R/print.EstTime.R | 8 +-- DySeq-0.22/DySeq/R/print.LogSeq.R | 22 +++++++- DySeq-0.22/DySeq/R/simSeq.R |only DySeq-0.22/DySeq/R/simSeqSample.R |only DySeq-0.22/DySeq/R/single.LogSeq.R | 9 ++- DySeq-0.22/DySeq/data/GiveSome.RData |only DySeq-0.22/DySeq/man/APIMtoTrans.Rd |only DySeq-0.22/DySeq/man/Basic_Markov_as_APIM.Rd |only DySeq-0.22/DySeq/man/CouplesCope.Rd | 1 DySeq-0.22/DySeq/man/DySeq.Rd | 2 DySeq-0.22/DySeq/man/EstFreq.Rd | 1 DySeq-0.22/DySeq/man/EstTime.Rd | 1 DySeq-0.22/DySeq/man/GiveSome.Rd |only DySeq-0.22/DySeq/man/LastOccur.Rd | 1 DySeq-0.22/DySeq/man/LogSeq.Rd | 6 +- DySeq-0.22/DySeq/man/MLAP_Trans.Rd |only DySeq-0.22/DySeq/man/ML_Trans.Rd |only DySeq-0.22/DySeq/man/NonCumHaz.Rd | 1 DySeq-0.22/DySeq/man/NumbOccur.Rd | 1 DySeq-0.22/DySeq/man/StateExpand.Rd | 1 DySeq-0.22/DySeq/man/StateTrans.Rd | 1 DySeq-0.22/DySeq/man/TransToAPIM.Rd |only DySeq-0.22/DySeq/man/plot.LogSeq.Rd | 1 DySeq-0.22/DySeq/man/print.EstFreq.Rd | 1 DySeq-0.22/DySeq/man/print.EstTime.Rd | 1 DySeq-0.22/DySeq/man/print.LogSeq.Rd | 1 DySeq-0.22/DySeq/man/print.state.trans.Rd | 1 DySeq-0.22/DySeq/man/simSeq.Rd |only DySeq-0.22/DySeq/man/simSeqSample.Rd |only DySeq-0.22/DySeq/man/single.LogSeq.Rd | 3 - 43 files changed, 148 insertions(+), 73 deletions(-)
Title: Statistical Functions for the Delaporte Distribution
Description: Provides probability mass, distribution, quantile, random-variate generation, and method-of-moments parameter-estimation functions for the Delaporte distribution. The Delaporte is a discrete probability distribution which can be considered the convolution of a negative binomial distribution with a Poisson distribution. Alternatively, it can be considered a counting distribution with both Poisson and negative binomial components. It has been studied in actuarial science as a frequency distribution which has more variability than the Poisson, but less than the negative binomial.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>
Diff between Delaporte versions 5.0.0 dated 2017-03-05 and 5.0.1 dated 2017-03-06
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- build/partial.rdb |binary inst/NEWS.Rd | 8 ++++++++ man/Delaporte-package.Rd | 2 +- src/delaporte.f95 | 38 +++++++++++++++++++++++++++----------- src/utils.f95 | 4 +--- src/utils_and_wrappers.c | 7 +++++++ 8 files changed, 54 insertions(+), 25 deletions(-)