Title: Zelig Ecological Inference Models
Description: Add-on package for Zelig 5. Enables the use of a variety of
ecological inference models.
Author: Christopher Gandrud [cre],
James Honaker [aut]
Maintainer: Christopher Gandrud <zelig.zee@gmail.com>
Diff between ZeligEI versions 0.1-0 dated 2016-05-28 and 0.1-1 dated 2017-05-22
DESCRIPTION | 34 ++++-- MD5 | 37 +++--- NAMESPACE | 5 NEWS.md |only R/create-json.R | 9 - R/model-dynamic-ei.R | 19 ++- R/model-ei.R | 230 ++++++++++++++++++++++++++++++++++++++---- R/model-hier-ei.R | 20 ++- R/model-ml-ei.R | 32 +++-- R/model-rxc-ei.R | 30 ++--- inst/JSON/zelig5eimodels.json | 8 - man/Zelig-ei-class.Rd | 4 man/Zelig-eidynamic-class.Rd | 7 + man/Zelig-eihier-class.Rd | 7 + man/Zelig-eiml-class.Rd | 2 man/Zelig-eirxc-class.Rd | 7 + man/checkZeligEIna.action.Rd |only man/convertEIformula.Rd | 7 - man/convertEIformula2.Rd |only tests/testthat/test-eihier.R |only tests/testthat/test-eiml.R | 63 ++++++++++- tests/testthat/test-eirxc.R |only 22 files changed, 409 insertions(+), 112 deletions(-)
Title: Mass-Univariate Voxelwise Analysis of Medical Imaging Data
Description: Functions for the mass-univariate voxelwise analysis of medical imaging data that follows the NIfTI <http://nifti.nimh.nih.gov> format.
Author: Angel Garcia de la Garza [aut, cre],
Simon Vandekar [aut],
David Roalf [aut],
Kosha Ruparel [aut],
Ruben Gur [aut],
Raquel Gur [aut],
Theodore Satterthwaite [aut],
R. Taki Shinohara [aut]
Maintainer: Angel Garcia de la Garza <agarciadlg@gmail.com>
Diff between voxel versions 1.2.1 dated 2016-08-26 and 1.3.2 dated 2017-05-22
voxel-1.2.1/voxel/NEWS.md |only voxel-1.3.2/voxel/DESCRIPTION | 8 +- voxel-1.3.2/voxel/MD5 | 115 +++++++++++++++++--------------- voxel-1.3.2/voxel/NAMESPACE | 6 + voxel-1.3.2/voxel/R/anovagamVoxel.R | 8 +- voxel-1.3.2/voxel/R/anovagammVoxel.R | 29 ++++---- voxel-1.3.2/voxel/R/anovalmVoxel.R | 7 + voxel-1.3.2/voxel/R/anovalmerVoxel.R | 11 +-- voxel-1.3.2/voxel/R/gamNIfTI.R | 37 +++++++--- voxel-1.3.2/voxel/R/gamRandomise.R |only voxel-1.3.2/voxel/R/gamVoxel.R | 4 - voxel-1.3.2/voxel/R/gammNIfTI.R | 40 ++++++++--- voxel-1.3.2/voxel/R/gammVoxel.R | 3 voxel-1.3.2/voxel/R/lmNIfTI.R | 32 ++++++-- voxel-1.3.2/voxel/R/lmVoxel.R | 1 voxel-1.3.2/voxel/R/lmerCluster.R | 2 voxel-1.3.2/voxel/R/lmerNIfTI.R | 36 +++++++--- voxel-1.3.2/voxel/R/lmerVoxel.R | 3 voxel-1.3.2/voxel/R/mergeNiftis.R | 1 voxel-1.3.2/voxel/R/parMap.R | 71 +++++++++---------- voxel-1.3.2/voxel/R/plotGAMM.R | 2 voxel-1.3.2/voxel/R/rgamParam.R |only voxel-1.3.2/voxel/R/rgamm4Param.R |only voxel-1.3.2/voxel/R/rlmParam.R |only voxel-1.3.2/voxel/R/rlmerParam.R |only voxel-1.3.2/voxel/R/rparMap.R |only voxel-1.3.2/voxel/R/ts2matrix.R | 5 - voxel-1.3.2/voxel/R/ts2meanCluster.R | 4 - voxel-1.3.2/voxel/R/vgamParam.R | 6 - voxel-1.3.2/voxel/R/vgamm4Param.R | 5 - voxel-1.3.2/voxel/R/vlmParam.R | 6 - voxel-1.3.2/voxel/R/vlmerParam.R | 5 - voxel-1.3.2/voxel/man/anovagamVoxel.Rd | 7 - voxel-1.3.2/voxel/man/anovagammVoxel.Rd | 25 +++--- voxel-1.3.2/voxel/man/anovalmVoxel.Rd | 8 +- voxel-1.3.2/voxel/man/anovalmerVoxel.Rd | 11 +-- voxel-1.3.2/voxel/man/gamCluster.Rd | 1 voxel-1.3.2/voxel/man/gamNIfTI.Rd | 11 +-- voxel-1.3.2/voxel/man/gamRandomise.Rd |only voxel-1.3.2/voxel/man/gamVoxel.Rd | 9 +- voxel-1.3.2/voxel/man/gammCluster.Rd | 1 voxel-1.3.2/voxel/man/gammNIfTI.Rd | 11 +-- voxel-1.3.2/voxel/man/gammVoxel.Rd | 4 - voxel-1.3.2/voxel/man/listFormula.Rd | 1 voxel-1.3.2/voxel/man/lmCluster.Rd | 1 voxel-1.3.2/voxel/man/lmNIfTI.Rd | 7 + voxel-1.3.2/voxel/man/lmVoxel.Rd | 2 voxel-1.3.2/voxel/man/lmerCluster.Rd | 3 voxel-1.3.2/voxel/man/lmerNIfTI.Rd | 11 +-- voxel-1.3.2/voxel/man/lmerVoxel.Rd | 4 - voxel-1.3.2/voxel/man/mergeNiftis.Rd | 2 voxel-1.3.2/voxel/man/parMap.Rd | 5 - voxel-1.3.2/voxel/man/plotGAM.Rd | 1 voxel-1.3.2/voxel/man/plotGAMM.Rd | 3 voxel-1.3.2/voxel/man/rgamParam.Rd |only voxel-1.3.2/voxel/man/rgamm4Param.Rd |only voxel-1.3.2/voxel/man/rlmParam.Rd |only voxel-1.3.2/voxel/man/rlmerParam.Rd |only voxel-1.3.2/voxel/man/rparMap.Rd |only voxel-1.3.2/voxel/man/ts2matrix.Rd | 6 - voxel-1.3.2/voxel/man/ts2meanCluster.Rd | 4 - voxel-1.3.2/voxel/man/vgamParam.Rd | 4 - voxel-1.3.2/voxel/man/vgamm4Param.Rd | 4 - voxel-1.3.2/voxel/man/vlmParam.Rd | 4 - voxel-1.3.2/voxel/man/vlmerParam.Rd | 4 - 65 files changed, 352 insertions(+), 249 deletions(-)
Title: Visual Exploration of Protein Alignments Resulting from Multiple
Substitution Matrices
Description: Substitution matrices are important parameters in protein alignment algorithms. These matrices represent the likelihood that an amino acid will be substituted for another during mutation. This tool allows users to apply predefined and custom matrices and then explore the resulting alignments with interactive visualizations. 'SubVis' requires the availability of a web browser.
Author: Scott Barlowe <sabarlowe@email.wcu.edu>
Maintainer: Scott Barlowe <sabarlowe@email.wcu.edu>
Diff between SubVis versions 2.0.1 dated 2017-01-12 and 2.0.2 dated 2017-05-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/SubVis.Rmd | 25 ++++++++++++++++++++++--- inst/doc/SubVis.html | 40 ++++++++++++++++++++++++---------------- vignettes/SubVis.Rmd | 25 ++++++++++++++++++++++--- 5 files changed, 76 insertions(+), 30 deletions(-)
Title: Simulation and Prediction with Seasonal ARIMA Models
Description: Functions, classes and methods for time series modelling with ARIMA
and related models. The aim of the package is to provide consistent
interface for the user. For example, a single function
autocorrelations() computes various kinds of
theoretical and sample autocorrelations. This is work in progress,
see the documentation and vignettes for the current functionality.
Author: Georgi N. Boshnakov
Maintainer: Georgi N. Boshnakov <georgi.boshnakov@manchester.ac.uk>
Diff between sarima versions 0.4-3 dated 2017-02-06 and 0.4-5 dated 2017-05-22
sarima-0.4-3/sarima/R/lagged.R |only sarima-0.4-3/sarima/man/FlexibleLagged-class.Rd |only sarima-0.4-3/sarima/man/Lagged-class.Rd |only sarima-0.4-3/sarima/man/Lagged.Rd |only sarima-0.4-3/sarima/man/Lagged1d-class.Rd |only sarima-0.4-3/sarima/man/Lagged2d-class.Rd |only sarima-0.4-3/sarima/man/Lagged3d-class.Rd |only sarima-0.4-3/sarima/man/bracket-methods.Rd |only sarima-0.4-3/sarima/man/bracketass-methods.Rd |only sarima-0.4-3/sarima/man/maxLag.Rd |only sarima-0.4-5/sarima/DESCRIPTION | 13 sarima-0.4-5/sarima/MD5 | 39 sarima-0.4-5/sarima/NAMESPACE | 19 sarima-0.4-5/sarima/NEWS | 11 sarima-0.4-5/sarima/R/armacalc.R | 27 sarima-0.4-5/sarima/R/autocovariances.R | 2286 +++++++++--------- sarima-0.4-5/sarima/R/utils.R | 10 sarima-0.4-5/sarima/TODO |only sarima-0.4-5/sarima/build/partial.rdb |binary sarima-0.4-5/sarima/build/vignette.rds |binary sarima-0.4-5/sarima/inst/doc/garch_tests_example.R |only sarima-0.4-5/sarima/inst/doc/garch_tests_example.Rnw |only sarima-0.4-5/sarima/inst/doc/garch_tests_example.pdf |only sarima-0.4-5/sarima/inst/doc/white_noise_tests.pdf |binary sarima-0.4-5/sarima/man/acfIidTest.Rd | 72 sarima-0.4-5/sarima/man/armaccf_xe.Rd | 74 sarima-0.4-5/sarima/vignettes/FMCC.rds |only sarima-0.4-5/sarima/vignettes/auto/gnbvig.el |only sarima-0.4-5/sarima/vignettes/garch_tests_example.Rnw |only 29 files changed, 1349 insertions(+), 1202 deletions(-)
Title: Survey Sampling Procedures
Description: Sampling procedures from the book 'Stichproben - Methoden
und praktische Umsetzung mit R' by Goeran Kauermann and Helmut
Kuechenhoff (2010).
Author: Juliane Manitz <r@manitz.org>, contributions by Mark
Hempelmann <mark.hempelmann@o2online.de>, Goeran Kauermann
<gkauermann@wiwi.uni-bielefeld.de>, Helmut Kuechenhoff
<kuechenhoff@stat.uni-muenchen.de>, Shuai Shao
<shuai.shao@campus.lmu.de>, Cornelia Oberhauser
<conny.oberhauser@gmx.de>, Nina Westerheide
<nwesterheide@wiwi.uni-bielefeld.de>, Manuel Wiesenfarth
<m.wiesenfarth@uni-goettingen.de>
Maintainer: Juliane Manitz <r@manitz.org>
Diff between samplingbook versions 1.2.1 dated 2016-07-10 and 1.2.2 dated 2017-05-22
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/Sprop.R | 9 +++++---- R/mbes.R | 3 ++- 4 files changed, 14 insertions(+), 12 deletions(-)
Title: Movement Data Visualization
Description: Tools to visualize movement data of any kind, e. g by creating path animations from GPS point data.
Author: Jakob Schwalb-Willmann [aut, cre]
Maintainer: Jakob Schwalb-Willmann <movevis@schwalb-willmann.de>
Diff between moveVis versions 0.9 dated 2017-05-18 and 0.9.1 dated 2017-05-22
DESCRIPTION | 8 ++-- MD5 | 13 ++++-- NAMESPACE | 1 NEWS |only R/animate_move.R | 64 ++++++++++++++++++-------------- R/animate_raster.R |only README.md | 97 ++++++++++++++++++++++++++++++++++++++++++++++---- man/animate_move.Rd | 16 +++++--- man/animate_raster.Rd |only 9 files changed, 149 insertions(+), 50 deletions(-)
Title: Multiresolution Kriging Based on Markov Random Fields
Description: Methods for the interpolation of large spatial
datasets. This package follows a "fixed rank Kriging" approach using
a large number of basis functions and provides spatial estimates
that are comparable to standard families of covariance functions.
Using a large number of basis functions allows for estimates that
can come close to interpolating the observations (a spatial model
with a small nugget variance.) Moreover, the covariance model for
this method can approximate the Matern covariance family but also
allows for a multi-resolution model and supports efficient
computation of the profile likelihood for estimating covariance
parameters. This is accomplished through compactly supported basis
functions and a Markov random field model for the basis
coefficients. These features lead to sparse matrices for the
computations and this package makes of the R spam package for this.
An extension of this version over previous ones ( < 5.4 ) is the
support for different geometries besides a rectangular domain. The
Markov random field approach combined with a basis function
representation makes the implementation of different geometries
simple where only a few specific functions need to be added with
most of the computation and evaluation done by generic routines that
have been tuned to be efficient. One benefit of this package's
model/approach is the facility to do unconditional and conditional
simulation of the field for large numbers of arbitrary points. There
is also the flexibility for estimating non-stationary covariances
and also the case when the observations are a linear combination
(e.g. an integral) of the spatial process. Included are generic
methods for prediction, standard errors for prediction, plotting of
the estimated surface and conditional and unconditional simulation.
Author: Douglas Nychka [aut, cre], Dorit Hammerling [aut], Stephan Sain [aut], Nathan Lenssen [aut], Colette Smirniotis [aut]
Maintainer: Douglas Nychka <nychka@ucar.edu>
Diff between LatticeKrig versions 6.2 dated 2016-12-20 and 6.4 dated 2017-05-22
DESCRIPTION | 12 ++++---- MD5 | 50 +++++++++++++++++++----------------- NAMESPACE | 7 ++--- R/LKrig.R | 1 R/LKrig.misc.R | 18 ------------ R/LKrig.sim.conditional.R | 4 ++ R/LKrig.traceA.R | 2 - R/ModelLKSphere.R | 43 +++++++++++++++++++++--------- R/print.LKinfo.R | 14 +++++++++- R/print.LKrig.R | 14 ++++++++++ R/print.LatticeKrig.R | 5 +++ R/summary.LKrig.R |only man/LKrig.MLE.Rd | 4 +- man/LKrig.Rd | 5 ++- man/LKrigMiscellaneous.Rd | 9 ------ man/registerdFORTRAN.Rd |only src/zzzinit.c |only tests/LKrig.LKCylinder.test.R | 2 - tests/LKrig.LKSphere.test.R |only tests/LKrig.lnPLike.test.R | 2 - tests/LKrig.se.test.R | 36 ++++++++++++++++++------- tests/LKrig.se.test.Rout.save | 11 +++---- tests/LKrig.test.3D.R | 6 ++-- tests/LKrig.test.3D.Rout.save | 10 +++---- tests/LKrig.test.R | 26 ++++++++++-------- tests/LKrig.test.Rout.save | 10 ++++--- tests/LKrig.testFindAwght.R | 34 +++++++++++++----------- tests/LKrig.testFindAwght.Rout.save | 26 +++++++++--------- 28 files changed, 204 insertions(+), 147 deletions(-)
Title: Summarizes CRAN Check Results in the Terminal
Description: The CRAN check results in your R terminal.
Author: Francois Michonneau [aut, cre],
Ben Bolker [ctb]
Maintainer: Francois Michonneau <francois.michonneau@gmail.com>
Diff between foghorn versions 0.4.2 dated 2017-02-08 and 0.4.4 dated 2017-05-22
DESCRIPTION | 8 +-- MD5 | 16 +++---- NEWS.md | 6 ++ R/cran_files.R | 28 ++++++------ R/foghorn.R | 45 ++++++++++---------- README.md | 85 +++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/quick_start.html | 93 ++++++++++++++++++++++-------------------- tests/testthat/test-foghorn.R | 30 ++++++------- 9 files changed, 163 insertions(+), 148 deletions(-)
Title: Fused Lasso Latent Feature Model
Description: Fits the Fused Lasso Latent Feature model, which is used for modeling multi-sample aCGH data to identify regions of copy number variation (CNV). Produces a set of features that describe the patterns of CNV and a set of weights that describe the composition of each sample. Also provides functions for choosing the optimal tuning parameters and the appropriate number of features, and for estimating the false discovery rate.
Author: Gen Nowak [aut, cre],
Trevor Hastie [aut],
Jonathan R. Pollack [aut],
Robert Tibshirani [aut],
Nicholas Johnson [aut]
Maintainer: Gen Nowak <gen.nowak@gmail.com>
Diff between FLLat versions 1.2 dated 2015-09-16 and 1.2-1 dated 2017-05-22
FLLat-1.2-1/FLLat/DESCRIPTION | 8 FLLat-1.2-1/FLLat/MD5 | 32 +- FLLat-1.2-1/FLLat/NAMESPACE | 2 FLLat-1.2-1/FLLat/NEWS | 10 FLLat-1.2-1/FLLat/R/FLLat.R | 2 FLLat-1.2-1/FLLat/R/predict.FLLat.R | 2 FLLat-1.2-1/FLLat/build/vignette.rds |binary FLLat-1.2-1/FLLat/inst/doc/FLLat_tutorial.R | 7 FLLat-1.2-1/FLLat/inst/doc/FLLat_tutorial.pdf |binary FLLat-1.2-1/FLLat/inst/doc/FLLat_tutorial.rnw | 7 FLLat-1.2-1/FLLat/man/FLLat.PVE.Rd | 4 FLLat-1.2-1/FLLat/src/FL_vit.c |only FLLat-1.2-1/FLLat/src/FL_vit.h |only FLLat-1.2-1/FLLat/src/Lat_L2.cpp | 324 +++++++++++++------------ FLLat-1.2-1/FLLat/src/gen_lat_func.cpp | 162 ++---------- FLLat-1.2-1/FLLat/src/gen_lat_func.h | 45 +-- FLLat-1.2-1/FLLat/vignettes/FLLat_tutorial.rnw | 7 FLLat-1.2/FLLat/src/FL.h |only FLLat-1.2/FLLat/src/L2L1VitExact.c |only 19 files changed, 264 insertions(+), 348 deletions(-)
Title: Bias Reduction in Generalized Linear Models
Description: Estimation and inference from generalized linear models based on various methods for bias reduction. The 'brglmFit' fitting method can achieve reduction of estimation bias by solving either the mean bias-reducing adjusted score equations in Firth (1993) <doi:10.1093/biomet/80.1.27> and Kosmidis and Firth (2009) <doi:10.1093/biomet/asp055>, or the median bias-reduction adjusted score equations in Kenne et al. (2016) <arXiv:1604.04768>, or through the direct subtraction of an estimate of the bias of the maximum likelihood estimator from the maximum likelihood estimates as in Cordeiro and McCullagh (1991) <http://www.jstor.org/stable/2345592>. Estimation in all cases takes place via a quasi Fisher scoring algorithm, and S3 methods for the construction of of confidence intervals for the reduced-bias estimates are provided. In the special case of generalized linear models for binomial and multinomial responses, the adjusted score approaches return estimates with improved frequentist properties, that are also always finite, even in cases where the maximum likelihood estimates are infinite (e.g. complete and quasi-complete separation). 'brglm2' also provides pre-fit and post-fit methods for detecting separation and infinite maximum likelihood estimates in binomial response generalized linear models.
Author: Ioannis Kosmidis [aut, cre],
Kjell Konis [ctb],
Euloge Clovis Kenne Pagui [ctb],
Nicola Sartori [ctb]
Maintainer: Ioannis Kosmidis <i.kosmidis@ucl.ac.uk>
Diff between brglm2 versions 0.1.3 dated 2017-04-04 and 0.1.4 dated 2017-05-22
brglm2-0.1.3/brglm2/R/detect_infinite_estimates.R |only brglm2-0.1.3/brglm2/man/detect_infinite_estimates.Rd |only brglm2-0.1.3/brglm2/man/detect_infinite_estimates.glm.Rd |only brglm2-0.1.3/brglm2/vignettes/iteration.html |only brglm2-0.1.4/brglm2/DESCRIPTION | 39 -- brglm2-0.1.4/brglm2/MD5 | 65 ++-- brglm2-0.1.4/brglm2/NAMESPACE | 13 brglm2-0.1.4/brglm2/NEWS.md | 17 + brglm2-0.1.4/brglm2/R/brglm2-package.R | 35 +- brglm2-0.1.4/brglm2/R/brglmControl.R | 29 + brglm2-0.1.4/brglm2/R/brglmFit.R | 233 ++++++++++++--- brglm2-0.1.4/brglm2/R/brmultinom.R | 26 + brglm2-0.1.4/brglm2/R/check_infinite_estimates.R |only brglm2-0.1.4/brglm2/R/detect_separation.R |only brglm2-0.1.4/brglm2/R/separator.R |only brglm2-0.1.4/brglm2/R/utils.R | 15 brglm2-0.1.4/brglm2/R/zzz_conventions.R |only brglm2-0.1.4/brglm2/README.md | 6 brglm2-0.1.4/brglm2/build/vignette.rds |binary brglm2-0.1.4/brglm2/inst/doc/iteration.Rmd | 108 ++++-- brglm2-0.1.4/brglm2/inst/doc/iteration.pdf |binary brglm2-0.1.4/brglm2/inst/doc/separation.R |only brglm2-0.1.4/brglm2/inst/doc/separation.Rmd |only brglm2-0.1.4/brglm2/inst/doc/separation.html |only brglm2-0.1.4/brglm2/man/brglm2.Rd | 35 +- brglm2-0.1.4/brglm2/man/brglmControl.Rd | 21 - brglm2-0.1.4/brglm2/man/brglmFit.Rd | 87 +++-- brglm2-0.1.4/brglm2/man/brmultinom.Rd | 17 - brglm2-0.1.4/brglm2/man/check_infinite_estimates.Rd |only brglm2-0.1.4/brglm2/man/check_infinite_estimates.glm.Rd |only brglm2-0.1.4/brglm2/man/coalition.Rd | 1 brglm2-0.1.4/brglm2/man/confint.brglmFit.Rd | 1 brglm2-0.1.4/brglm2/man/detect_separation.Rd |only brglm2-0.1.4/brglm2/man/detect_separation_control.Rd |only brglm2-0.1.4/brglm2/man/endometrial.Rd | 1 brglm2-0.1.4/brglm2/man/lizards.Rd | 1 brglm2-0.1.4/brglm2/man/summary.brglmFit.Rd | 1 brglm2-0.1.4/brglm2/man/vcov.brglmFit.Rd | 1 brglm2-0.1.4/brglm2/vignettes/brglm2.bib | 40 ++ brglm2-0.1.4/brglm2/vignettes/iteration.Rmd | 108 ++++-- brglm2-0.1.4/brglm2/vignettes/separation.Rmd |only brglm2-0.1.4/brglm2/vignettes/separation[exported].html |only 42 files changed, 649 insertions(+), 251 deletions(-)
Title: Efficient Breeding by Genomic Mating
Description: Implements the genomic mating approach in the recently published article: Akdemir, D., & Sanchez, J. I. (2016). Efficient Breeding by Genomic Mating. Frontiers in Genetics, 7. <DOI:10.3389/fgene.2016.00210>.
Author: Deniz Akdemir
Maintainer: Deniz Akdemir <deniz.akdemir.work@gmail.com>
Diff between GenomicMating versions 1.0 dated 2017-03-31 and 1.1 dated 2017-05-22
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/MatingPrograms.R | 6 ++++-- build/partial.rdb |binary man/getGaSolutions.rd | 5 +++-- 5 files changed, 15 insertions(+), 12 deletions(-)
Title: Reimplementations of Functions Introduced Since R-3.0.0
Description: Implementations of functions which have been introduced in
R since version 3.0.0. The backports are conditionally exported which
results in R resolving the function names to the version shipped with R (if
available) and uses the implemented backports as fallback. This way package
developers can make use of the new functions without worrying about the
minimum required R version.
Author: Michel Lang <michellang@gmail.com>
Maintainer: Michel Lang <michellang@gmail.com>
Diff between backports versions 1.0.5 dated 2017-01-18 and 1.1.0 dated 2017-05-22
DESCRIPTION | 8 ++++---- MD5 | 30 ++++++++++++++++-------------- NAMESPACE | 1 + NEWS.md | 7 +++++++ R/import.R |only man/anyNA.Rd | 1 - man/dir.exists.Rd | 1 - man/endsWith.Rd | 1 - man/file.info.Rd | 1 - man/file.size.Rd | 1 - man/get0.Rd | 1 - man/hasName.Rd | 1 - man/import.Rd |only man/lengths.Rd | 1 - man/startsWith.Rd | 1 - man/strrep.Rd | 1 - man/trimws.Rd | 1 - 17 files changed, 28 insertions(+), 29 deletions(-)
Title: Markdown Reference Manuals
Description: The native R functionalities only allow PDF exports of reference manuals. This shall be extended by converting the package documentation files into markdown files and combining them into a markdown version of the package reference manual.
Author: Julian Busch [aut, cre]
Maintainer: Julian Busch <jb@quants.ch>
Diff between Rd2md versions 0.0.1 dated 2017-05-21 and 0.0.2 dated 2017-05-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS | 7 +++++++ R/Rd2markdown.R | 2 +- inst/doc/Introduction.pdf |binary 5 files changed, 15 insertions(+), 8 deletions(-)
Title: Dimensionality Assessment using Minimum Rank Factor Analysis
Description: Performs Parallel Analysis for assessing the dimensionality of a set of variables using Minimum Rank Factor Analysis (see Timmerman & Lorenzo-Seva (2011) <DOI:10.1037/a0023353> and ten Berge & Kiers (1991) <DOI:10.1007/BF02294464> for more information).
The package also includes the option to compute Minimum Rank Factor Analysis by itself, as well as the Greater Lower Bound calculation.
Author: David Navarro-Gonzalez, Urbano Lorenzo-Seva
Maintainer: David Navarro-Gonzalez <david.navarro@urv.cat>
Diff between DA.MRFA versions 1.1 dated 2017-04-19 and 1.1.2 dated 2017-05-22
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- R/mrfa.R | 26 +++++++++++--------------- man/parallelMRFA.Rd | 2 +- man/testme.Rd | 2 +- 5 files changed, 22 insertions(+), 26 deletions(-)
Title: R Interface to Python
Description: R interface to Python modules, classes, and functions. When calling
into Python R data types are automatically converted to their equivalent Python
types. When values are returned from Python to R they are converted back to R
types. Compatible with all versions of Python >= 2.7.
Author: JJ Allaire [aut, cre],
Kevin Ushey [ctb],
RStudio [cph, fnd],
Yuan Tang [aut, cph],
Dirk Eddelbuettel [ctb, cph],
Bryan Lewis [ctb, cph],
Marcus Geelnard [aut, cph] (TinyThread library,
http://tinythreadpp.bitsnbites.eu/)
Maintainer: JJ Allaire <jj@rstudio.com>
Diff between reticulate versions 0.7 dated 2017-03-14 and 0.8 dated 2017-05-22
reticulate-0.7/reticulate/src/init.cpp |only reticulate-0.8/reticulate/DESCRIPTION | 19 reticulate-0.8/reticulate/MD5 | 91 +- reticulate-0.8/reticulate/NAMESPACE | 32 reticulate-0.8/reticulate/NEWS.md |only reticulate-0.8/reticulate/R/RcppExports.R | 109 +- reticulate-0.8/reticulate/R/config.R | 255 ++++-- reticulate-0.8/reticulate/R/help.R | 151 +++ reticulate-0.8/reticulate/R/package.R | 33 reticulate-0.8/reticulate/R/python.R | 335 +++++--- reticulate-0.8/reticulate/R/use_python.R | 205 ++++ reticulate-0.8/reticulate/R/utils.R |only reticulate-0.8/reticulate/R/wrapper.R |only reticulate-0.8/reticulate/build/vignette.rds |binary reticulate-0.8/reticulate/inst/doc/arrays.html | 2 reticulate-0.8/reticulate/inst/doc/introduction.R | 70 - reticulate-0.8/reticulate/inst/doc/introduction.Rmd | 207 ---- reticulate-0.8/reticulate/inst/doc/introduction.html | 180 ---- reticulate-0.8/reticulate/inst/doc/package.R |only reticulate-0.8/reticulate/inst/doc/package.Rmd |only reticulate-0.8/reticulate/inst/doc/package.html |only reticulate-0.8/reticulate/inst/doc/versions.R |only reticulate-0.8/reticulate/inst/doc/versions.Rmd |only reticulate-0.8/reticulate/inst/doc/versions.html |only reticulate-0.8/reticulate/inst/python/rpytools/__init__.pyc |binary reticulate-0.8/reticulate/inst/python/rpytools/call.py | 5 reticulate-0.8/reticulate/inst/python/rpytools/call.pyc |binary reticulate-0.8/reticulate/inst/python/rpytools/help.py | 114 ++ reticulate-0.8/reticulate/inst/python/rpytools/help.pyc |only reticulate-0.8/reticulate/inst/python/rpytools/output.pyc |binary reticulate-0.8/reticulate/inst/python/rpytools/test.py | 56 + reticulate-0.8/reticulate/inst/python/rpytools/test.pyc |binary reticulate-0.8/reticulate/man/conda-tools.Rd |only reticulate-0.8/reticulate/man/import.Rd | 26 reticulate-0.8/reticulate/man/py_config_error_message.Rd |only reticulate-0.8/reticulate/man/py_discover_config.Rd |only reticulate-0.8/reticulate/man/py_function_wrapper.Rd |only reticulate-0.8/reticulate/man/py_last_error.Rd |only reticulate-0.8/reticulate/man/py_run.Rd | 18 reticulate-0.8/reticulate/man/py_versions_windows.Rd |only reticulate-0.8/reticulate/man/r-py-conversion.Rd | 4 reticulate-0.8/reticulate/man/register_class_filter.Rd |only reticulate-0.8/reticulate/src/RcppExports.cpp | 157 +++ reticulate-0.8/reticulate/src/libpython.cpp | 8 reticulate-0.8/reticulate/src/libpython.h | 18 reticulate-0.8/reticulate/src/python.cpp | 416 ++++++++-- reticulate-0.8/reticulate/src/reticulate_types.h | 22 reticulate-0.8/reticulate/tests/testthat/expected_class_wrapper.txt |only reticulate-0.8/reticulate/tests/testthat/expected_function_wrapper.txt |only reticulate-0.8/reticulate/tests/testthat/test-python-classes.R |only reticulate-0.8/reticulate/tests/testthat/test-python-comparisons.R |only reticulate-0.8/reticulate/tests/testthat/test-python-function.R | 5 reticulate-0.8/reticulate/tests/testthat/test-python-lists.R | 7 reticulate-0.8/reticulate/tests/testthat/test-python-numpy.R | 7 reticulate-0.8/reticulate/tests/testthat/test-python-wrapper.R |only reticulate-0.8/reticulate/tests/testthat/utils.R | 1 reticulate-0.8/reticulate/vignettes/introduction.Rmd | 207 ---- reticulate-0.8/reticulate/vignettes/package.Rmd |only reticulate-0.8/reticulate/vignettes/versions.Rmd |only 59 files changed, 1775 insertions(+), 985 deletions(-)
Title: Diagnostic Plot and Multivariate Summary Statistics of Weighted
Samples from Importance Sampling
Description: Fast functions for effective sample size, weighted multivariate mean and variance computation,
and weight diagnostic plot for generic importance sampling type results.
Author: Jouni Helske
Maintainer: Jouni Helske <jouni.helske@jyu.fi>
Diff between diagis versions 0.1.0 dated 2016-10-29 and 0.1.2 dated 2017-05-22
DESCRIPTION | 13 +-- MD5 | 60 ++++++++------- NAMESPACE | 80 ++++++++++++--------- NEWS |only R/RcppExports.R | 126 ++++++++++++++++----------------- R/diagis-package.R | 2 R/ess.R | 2 R/means.R | 108 +++++++++++++++++++++------- R/ses.R | 19 +++++ R/vars.R | 57 ++++++++++----- build/vignette.rds |binary inst/doc/diagis.R | 48 ++++++------ inst/doc/diagis.Rmd | 19 +++-- inst/doc/diagis.pdf |binary man/diagis.Rd | 75 +++++++++---------- man/ess.Rd | 43 +++++------ man/running_ess.Rd | 45 +++++------ man/running_mean.Rd | 45 +++++------ man/running_var.Rd | 46 ++++++------ man/running_weighted_mean.Rd | 49 ++++++------- man/running_weighted_var.Rd | 51 ++++++------- man/weight_plot.Rd | 55 +++++++------- man/weighted_mean.Rd | 49 ++++++------- man/weighted_se.Rd | 53 ++++++-------- man/weighted_var.Rd | 65 ++++++++--------- src/RcppExports.cpp | 162 +++++++++++++++++++++---------------------- src/init.c |only src/summary.cpp | 10 +- src/summary_vec.cpp | 4 - tests/testthat/test-var.R | 12 +-- vignettes/diagis.Rmd | 19 +++-- vignettes/diagis.bib | 6 + 32 files changed, 722 insertions(+), 601 deletions(-)
Title: Mini Charts for Interactive Maps
Description: Add and modify small charts on an interactive map created with
package 'leaflet'. These charts can be used to represent at same time multiple
variables on a single map.
Author: Francois Guillem [aut, cre],
Jalal-Edine ZAWAM [ctb],
RTE [cph]
Maintainer: Francois Guillem <francois.guillem@rte-france.com>
Diff between leaflet.minicharts versions 0.2.0 dated 2017-05-05 and 0.3.0 dated 2017-05-22
leaflet.minicharts-0.2.0/leaflet.minicharts/inst/timeslider.css |only leaflet.minicharts-0.3.0/leaflet.minicharts/DESCRIPTION | 6 leaflet.minicharts-0.3.0/leaflet.minicharts/MD5 | 30 ++- leaflet.minicharts-0.3.0/leaflet.minicharts/NAMESPACE | 1 leaflet.minicharts-0.3.0/leaflet.minicharts/NEWS | 12 + leaflet.minicharts-0.3.0/leaflet.minicharts/R/add_flows.R | 37 +--- leaflet.minicharts-0.3.0/leaflet.minicharts/R/add_minicharts.R | 35 ++-- leaflet.minicharts-0.3.0/leaflet.minicharts/R/make_options.R | 14 + leaflet.minicharts-0.3.0/leaflet.minicharts/R/minicharts_deps.R | 2 leaflet.minicharts-0.3.0/leaflet.minicharts/R/popupArgs.R |only leaflet.minicharts-0.3.0/leaflet.minicharts/R/prepare_args.R | 79 ++++++++-- leaflet.minicharts-0.3.0/leaflet.minicharts/R/zzz.R | 4 leaflet.minicharts-0.3.0/leaflet.minicharts/inst/doc/introduction.html | 28 +-- leaflet.minicharts-0.3.0/leaflet.minicharts/inst/leaflet.minicharts.min.js | 23 +- leaflet.minicharts-0.3.0/leaflet.minicharts/inst/minicharts.css |only leaflet.minicharts-0.3.0/leaflet.minicharts/man/addFlows.Rd | 9 - leaflet.minicharts-0.3.0/leaflet.minicharts/man/addMinicharts.Rd | 5 leaflet.minicharts-0.3.0/leaflet.minicharts/man/popupArgs.Rd |only 18 files changed, 181 insertions(+), 104 deletions(-)
More information about leaflet.minicharts at CRAN
Permanent link
Title: R Optimization Infrastructure
Description: The R Optimization Infrastructure ('ROI') is a
sophisticated framework for handling optimization problems in R.
Author: Kurt Hornik [aut],
David Meyer [aut],
Florian Schwendinger [aut],
Stefan Theussl [aut, cre],
Diethelm Wuertz [ctb]
Maintainer: Stefan Theussl <Stefan.Theussl@R-Project.org>
Diff between ROI versions 0.2-5 dated 2017-05-17 and 0.2-6 dated 2017-05-22
ROI-0.2-5/ROI/inst |only ROI-0.2-6/ROI/DESCRIPTION | 8 ++++---- ROI-0.2-6/ROI/MD5 | 34 ++++------------------------------ ROI-0.2-6/ROI/NAMESPACE | 2 +- ROI-0.2-6/ROI/R/solution.R | 2 +- ROI-0.2-6/ROI/tests/ROI.R | 37 ++++++++++++++++++++++--------------- 6 files changed, 32 insertions(+), 51 deletions(-)
Title: Phase I/II Adaptive Dose-Finding Design for MTA
Description: Phase I/II adaptive dose-finding design for single-agent
Molecularly Targeted Agent (MTA), according to the paper "Phase
I/II Dose-Finding Design for Molecularly Targeted Agent: Plateau
Determination using Adaptive Randomization".
Author: Marie-Karelle Riviere and Jacques-Henri Jourdan
Maintainer: Marie-Karelle Riviere <eldamjh@gmail.com>
Diff between dfmta versions 1.4 dated 2017-03-27 and 1.5 dated 2017-05-22
DESCRIPTION | 12 MD5 | 20 - configure | 34 +- configure.ac | 14 man/mtaBin_sim.Rd | 24 - src/CppBugs/cppbugs/distributions/mcmc.discrete.hpp | 8 src/CppBugs/cppbugs/distributions/mcmc.exponential.censored.hpp | 4 src/CppBugs/cppbugs/distributions/mcmc.exponential.hpp | 4 src/CppBugs/cppbugs/mcmc.math.hpp | 166 ++-------- src/CppBugs/cppbugs/mcmc.rng.hpp | 2 src/dfmta.cpp | 4 11 files changed, 112 insertions(+), 180 deletions(-)
Title: Phase I/II Adaptive Dose-Finding Design for Combination Studies
Description: Phase I/II adaptive dose-finding design for combination
studies. Several methods are proposed depending on the type of
combinations: (1) the combination of two cytotoxic agents, and (2)
combination of a molecularly targeted agent with a cytotoxic agent.
Author: Marie-Karelle Riviere and Jacques-Henri Jourdan
Maintainer: Marie-Karelle Riviere <eldamjh@gmail.com>
Diff between dfcomb versions 2.2 dated 2017-03-27 and 2.3 dated 2017-05-22
DESCRIPTION | 10 MD5 | 20 - configure | 34 +- configure.ac | 14 man/CombPlateau_sim.Rd | 32 - src/CppBugs/cppbugs/distributions/mcmc.discrete.hpp | 8 src/CppBugs/cppbugs/distributions/mcmc.exponential.censored.hpp | 4 src/CppBugs/cppbugs/distributions/mcmc.exponential.hpp | 4 src/CppBugs/cppbugs/mcmc.math.hpp | 166 ++-------- src/CppBugs/cppbugs/mcmc.rng.hpp | 2 src/plateau.cpp | 7 11 files changed, 116 insertions(+), 185 deletions(-)
Title: Optimal Bayesian Experimental Design using the ACE Algorithm
Description: Optimal Bayesian experimental design using the approximate coordinate exchange (ACE) algorithm.
Author: Antony M. Overstall, David C. Woods & Maria Adamou
Maintainer: Antony M. Overstall <A.M.Overstall@soton.ac.uk>
Diff between acebayes versions 1.3.4 dated 2017-02-10 and 1.4 dated 2017-05-22
DESCRIPTION | 12 MD5 | 30 NAMESPACE | 4 R/acebayes.R | 2672 ++++++++++++++++++++++++----------------------- R/sysdata.rda |binary build |only inst |only man/ace.Rd | 97 - man/acebayes-internal.Rd | 32 man/acebayes-package.Rd | 34 man/aceglm.Rd | 78 - man/acenlm.Rd | 159 +- man/aceobjects.Rd | 2 man/eff.Rd |only man/overstallwoods.Rd | 38 man/utilities.Rd | 116 -- src/acebayes_init.c |only vignettes |only 18 files changed, 1714 insertions(+), 1560 deletions(-)
Title: Build Common Tables of Summary Statistics for Reports
Description: Mainly used to build tables that are commonly presented for
bio-medical/health research, such as basic characteristic tables or
descriptive statistics.
Author: Luke Johnston [aut, cre]
Maintainer: Luke Johnston <lwjohnst@gmail.com>
Diff between carpenter versions 0.2.0 dated 2016-07-29 and 0.2.1 dated 2017-05-22
DESCRIPTION | 8 ++++---- MD5 | 28 ++++++++++++++-------------- NEWS.md | 11 +++++++++++ R/build_table.R | 7 ++++--- README.md | 15 ++++++++++++--- build/vignette.rds |binary inst/doc/carpenter.Rmd | 1 + inst/doc/carpenter.html | 9 +++++---- man/add_rows.Rd | 1 - man/build_table.Rd | 1 - man/carpenter.Rd | 1 - man/outline_table.Rd | 1 - man/renaming.Rd | 1 - man/table_stats.Rd | 9 ++++----- vignettes/carpenter.Rmd | 1 + 15 files changed, 56 insertions(+), 38 deletions(-)
Title: A Simple Package for Testing R Packages
Description: Provides two convenience functions assert() and test_pkg() to
facilitate testing R packages.
Author: Yihui Xie
Maintainer: Yihui Xie <xie@yihui.name>
Diff between testit versions 0.6 dated 2016-11-09 and 0.7 dated 2017-05-22
DESCRIPTION | 10 ++-- MD5 | 18 +++---- NAMESPACE | 2 NEWS | 8 +++ R/testit.R | 102 +++++++++++++++++++++++++++++++++++---------- README.md | 9 +++ man/assert.Rd | 63 ++++++++++++++++++++++----- man/has_message.Rd | 3 - man/test_pkg.Rd | 1 tests/testit/test-assert.R | 15 +++++- 10 files changed, 177 insertions(+), 54 deletions(-)
Title: Size-Constrained Clustering
Description: Provides wrappers for 'scclust', a C library for computationally efficient
size-constrained clustering with near-optimal performance.
See <https://github.com/fsavje/scclust> for more information.
Author: Fredrik Savje [aut, cre],
Michael Higgins [aut],
Jasjeet Sekhon [aut]
Maintainer: Fredrik Savje <fredrik.savje@berkeley.edu>
Diff between scclust versions 0.1.0 dated 2017-03-28 and 0.1.1 dated 2017-05-22
DESCRIPTION | 10 ++++++---- MD5 | 25 +++++++++++++------------ NEWS.md |only R/input_check.R | 2 +- R/internal.R | 21 --------------------- R/sc_clustering.R | 4 ++-- R/scclust-package.R | 4 ++-- README.md | 16 +++++++++++++--- man/sc_clustering.Rd | 4 ++-- man/scclust-package.Rd | 4 ++-- src/libscclust/Makefile | 36 ++++++++++++++++++------------------ src/libscclust/src/nng_core.c | 14 ++++++++------ tests/testthat/test_input_check.R | 2 +- tests/testthat/test_internal.R | 21 --------------------- 14 files changed, 68 insertions(+), 95 deletions(-)
Title: UCA Rcmdr Plug-in
Description: Some extension to Rcmdr (R Commander), randomness test, variance test for one normal sample and predictions using active model, made by R-UCA project and used in teaching statistics at University of Cadiz (UCA).
Author: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Maintainer: Manuel Munoz-Marquez <manuel.munoz@uca.es>
Diff between RcmdrPlugin.UCA versions 3.1-2 dated 2016-09-20 and 4.1-1 dated 2017-05-22
ChangeLog | 24 +++++-- DESCRIPTION | 16 ++--- MD5 | 34 ++++++---- NAMESPACE | 3 R/RcmdrPlugin.UCA.R | 46 ++++++++++++++ R/globals.R | 2 demo/00Index | 2 demo/sigma_test.R |only demo/test_sigma.R |only inst/etc/menus.txt | 3 inst/po/es/LC_MESSAGES/R-RcmdrPlugin.UCA.mo |binary man/RcmdrPlugin.UCA-internal.Rd | 1 man/RcmdrPlugin.UCA-package.Rd | 89 ++-------------------------- man/RcmdrPlugin.UCA.es-package.Rd | 88 ++------------------------- man/predictMenu.Rd |only man/predictMenu.es.Rd |only man/randdomnessMenu.Rd |only man/randdomnessMenu.es.Rd |only man/sigmaMenu.Rd |only man/sigmaMenu.es.Rd |only po/R-RcmdrPlugin.UCA-es.po | 24 ++++++- po/R-RcmdrPlugin.UCA.pot | 20 +++++- 22 files changed, 155 insertions(+), 197 deletions(-)
More information about RcmdrPlugin.UCA at CRAN
Permanent link
Title: An API Generator for R
Description: Gives the ability to automatically generate and serve an HTTP API
from R functions using the annotations in the R documentation around your
functions.
Author: Trestle Technology, LLC [aut],
Jeff Allen [cre],
Frans van Dunné [ctb]
Maintainer: Jeff Allen <cran@trestletech.com>
Diff between plumber versions 0.3.1 dated 2016-10-04 and 0.3.2 dated 2017-05-22
plumber-0.3.1/plumber/inst/examples/01-append/appender.R |only plumber-0.3.1/plumber/inst/examples/02-filters/filters.R |only plumber-0.3.1/plumber/inst/examples/03-github/github.R |only plumber-0.3.1/plumber/inst/examples/04-mean-sum/meansum.R |only plumber-0.3.1/plumber/inst/examples/05-static/static.R |only plumber-0.3.1/plumber/inst/examples/06-sessions/sessions.R |only plumber-0.3.1/plumber/inst/examples/07-mailgun/mailgun.R |only plumber-0.3.1/plumber/inst/examples/08-identity/identity.R |only plumber-0.3.1/plumber/inst/examples/09-content-type/content-type.R |only plumber-0.3.2/plumber/DESCRIPTION | 20 +- plumber-0.3.2/plumber/MD5 | 88 +++++----- plumber-0.3.2/plumber/NAMESPACE | 6 plumber-0.3.2/plumber/NEWS.md | 10 + plumber-0.3.2/plumber/R/cookie-parser.R | 8 plumber-0.3.2/plumber/R/digital-ocean.R |only plumber-0.3.2/plumber/R/includes.R | 2 plumber-0.3.2/plumber/R/plumber.R | 7 plumber-0.3.2/plumber/R/query-string.R | 2 plumber-0.3.2/plumber/R/serializer-htmlwidget.R |only plumber-0.3.2/plumber/R/serializer-json.R | 19 ++ plumber-0.3.2/plumber/R/serializer-xml.R | 4 plumber-0.3.2/plumber/README.md | 14 + plumber-0.3.2/plumber/inst/examples/01-append/plumber.R |only plumber-0.3.2/plumber/inst/examples/02-filters/plumber.R |only plumber-0.3.2/plumber/inst/examples/03-github/plumber.R |only plumber-0.3.2/plumber/inst/examples/04-mean-sum/plumber.R |only plumber-0.3.2/plumber/inst/examples/05-static/plumber.R |only plumber-0.3.2/plumber/inst/examples/06-sessions/plumber.R |only plumber-0.3.2/plumber/inst/examples/07-mailgun/plumber.R |only plumber-0.3.2/plumber/inst/examples/08-identity/plumber.R |only plumber-0.3.2/plumber/inst/examples/09-content-type/plumber.R |only plumber-0.3.2/plumber/inst/examples/10-welcome |only plumber-0.3.2/plumber/inst/hosted-new.R |only plumber-0.3.2/plumber/inst/hosted/nginx.conf | 8 plumber-0.3.2/plumber/inst/server |only plumber-0.3.2/plumber/man/PlumberProcessor.Rd | 1 plumber-0.3.2/plumber/man/addSerializer.Rd | 1 plumber-0.3.2/plumber/man/do_configure_https.Rd |only plumber-0.3.2/plumber/man/do_deploy_api.Rd |only plumber-0.3.2/plumber/man/do_forward.Rd |only plumber-0.3.2/plumber/man/do_provision.Rd |only plumber-0.3.2/plumber/man/do_remove_api.Rd |only plumber-0.3.2/plumber/man/do_remove_forward.Rd |only plumber-0.3.2/plumber/man/forward.Rd | 1 plumber-0.3.2/plumber/man/include_file.Rd | 1 plumber-0.3.2/plumber/man/plumber.Rd | 3 plumber-0.3.2/plumber/man/sessionCookie.Rd | 1 plumber-0.3.2/plumber/tests/testthat/files/include/test.html | 18 +- plumber-0.3.2/plumber/tests/testthat/files/serializer.R | 2 plumber-0.3.2/plumber/tests/testthat/files/verbs.R | 5 plumber-0.3.2/plumber/tests/testthat/test-cookies.R | 8 plumber-0.3.2/plumber/tests/testthat/test-enumerate.R | 2 plumber-0.3.2/plumber/tests/testthat/test-include.R | 19 +- plumber-0.3.2/plumber/tests/testthat/test-plumber.R | 5 plumber-0.3.2/plumber/tests/testthat/test-querystring.R | 7 plumber-0.3.2/plumber/tests/testthat/test-serializer-htmlwidgets.R |only plumber-0.3.2/plumber/tests/testthat/test-serializer-json.R | 23 ++ plumber-0.3.2/plumber/tests/testthat/test-static.R | 6 58 files changed, 206 insertions(+), 85 deletions(-)
Title: Seamless R and C++ Integration
Description: The 'Rcpp' package provides R functions as well as C++ classes which
offer a seamless integration of R and C++. Many R data types and objects can be
mapped back and forth to C++ equivalents which facilitates both writing of new
code as well as easier integration of third-party libraries. Documentation
about 'Rcpp' is provided by several vignettes included in this package, via the
'Rcpp Gallery' site at <http://gallery.rcpp.org>, the paper by Eddelbuettel and
Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see
'citation("Rcpp")' for details on these last two.
Author: Dirk Eddelbuettel, Romain Francois, JJ Allaire, Kevin Ushey, Qiang Kou,
Nathan Russell, Douglas Bates and John Chambers
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between Rcpp versions 0.12.10 dated 2017-03-19 and 0.12.11 dated 2017-05-22
ChangeLog | 197 +++++ DESCRIPTION | 8 MD5 | 153 ++-- R/Attributes.R | 78 ++ R/Rcpp.package.skeleton.R | 31 README.md | 2 build/Rcpp.pdf |binary build/vignette.rds |binary inst/NEWS.Rd | 53 + inst/bib/Rcpp.bib | 2 inst/doc/Rcpp-FAQ.R | 106 ++- inst/doc/Rcpp-FAQ.Rnw | 442 +++++++++++-- inst/doc/Rcpp-FAQ.pdf |binary inst/doc/Rcpp-attributes.pdf |binary inst/doc/Rcpp-extending.pdf |binary inst/doc/Rcpp-introduction.pdf |binary inst/doc/Rcpp-modules.pdf |binary inst/doc/Rcpp-package.pdf |binary inst/doc/Rcpp-quickref.pdf |binary inst/doc/Rcpp-sugar.pdf |binary inst/doc/Rcpp-unitTests.pdf |binary inst/include/Rcpp/DataFrame.h | 2 inst/include/Rcpp/Environment.h | 20 inst/include/Rcpp/Function.h | 7 inst/include/Rcpp/Promise.h | 7 inst/include/Rcpp/S4.h | 5 inst/include/Rcpp/String.h | 9 inst/include/Rcpp/Symbol.h | 4 inst/include/Rcpp/XPtr.h | 7 inst/include/Rcpp/api/meat/DottedPairImpl.h | 32 inst/include/Rcpp/api/meat/Rcpp_eval.h | 29 inst/include/Rcpp/api/meat/module/Module.h | 4 inst/include/Rcpp/as.h | 26 inst/include/Rcpp/config.h | 6 inst/include/Rcpp/date_datetime/Date.h | 6 inst/include/Rcpp/date_datetime/Datetime.h | 17 inst/include/Rcpp/date_datetime/newDateVector.h | 8 inst/include/Rcpp/date_datetime/newDatetimeVector.h | 8 inst/include/Rcpp/exceptions |only inst/include/Rcpp/exceptions.h | 233 ++---- inst/include/Rcpp/internal/export.h | 14 inst/include/Rcpp/macros/macros.h | 9 inst/include/Rcpp/module/Module.h | 30 inst/include/Rcpp/module/Module_Property.h | 204 ++---- inst/include/Rcpp/proxy/DottedPairProxy.h | 14 inst/include/Rcpp/proxy/SlotProxy.h | 4 inst/include/Rcpp/r_cast.h | 35 - inst/include/Rcpp/sugar/functions/rep.h | 2 inst/include/Rcpp/sugar/functions/rowSums.h | 6 inst/include/Rcpp/sugar/functions/sample.h | 2 inst/include/Rcpp/sugar/functions/strings/strings.h | 1 inst/include/Rcpp/sugar/functions/strings/trimws.h |only inst/include/Rcpp/utils/tinyformat.h | 43 - inst/include/Rcpp/vector/Matrix.h | 4 inst/include/Rcpp/vector/MatrixColumn.h | 20 inst/include/Rcpp/vector/MatrixRow.h | 14 inst/include/Rcpp/vector/Vector.h | 76 +- inst/unitTests/cpp/exceptions.cpp | 5 inst/unitTests/cpp/sugar.cpp | 18 inst/unitTests/runit.exceptions.R | 10 inst/unitTests/runit.sugar.R | 131 +++ inst/unitTests/testRcppClass/DESCRIPTION | 4 inst/unitTests/testRcppClass/NAMESPACE | 2 inst/unitTests/testRcppClass/R/rcpp_hello_world.R | 2 inst/unitTests/testRcppClass/src/init.c |only inst/unitTests/testRcppClass/src/rcpp_hello_world.cpp | 2 inst/unitTests/testRcppClass/src/rcpp_hello_world.h | 2 inst/unitTests/testRcppModule/DESCRIPTION | 2 inst/unitTests/testRcppModule/NAMESPACE | 2 inst/unitTests/testRcppModule/R/rcpp_hello_world.R | 2 inst/unitTests/testRcppModule/man/Rcpp_modules_examples.Rd | 8 inst/unitTests/testRcppModule/man/rcpp_hello_world.Rd | 1 inst/unitTests/testRcppModule/src/init.c |only inst/unitTests/testRcppModule/src/rcpp_hello_world.cpp | 2 inst/unitTests/testRcppModule/src/rcpp_hello_world.h | 2 inst/unitTests/testRcppModule/tests/modules.R | 5 src/Rcpp_init.cpp | 2 src/attributes.cpp | 207 ++++-- vignettes/Rcpp-FAQ.Rnw | 442 +++++++++++-- 79 files changed, 2162 insertions(+), 669 deletions(-)