Wed, 24 Mar 2021

Package csp (with last version 0.1.0) was removed from CRAN

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2016-07-04 0.1.0

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Package wildviz (with last version 0.1.1) was removed from CRAN

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2021-01-27 0.1.1

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Package Sojourn.Data (with last version 0.1.0) was removed from CRAN

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2019-05-03 0.1.0

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Package HCT (with last version 0.1.0) was removed from CRAN

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2018-08-02 0.1.0

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Package adeptdata (with last version 1.0.1) was removed from CRAN

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2019-03-30 1.0.1

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Package ameco (with last version 0.2.9) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2018-05-06 0.2.9
2017-11-13 0.2.8
2017-05-29 0.2.7
2017-02-15 0.2.6
2017-01-30 0.2.5
2016-11-11 0.2.4
2016-05-04 0.2.3
2016-02-04 0.2.2
2016-01-19 0.2
2015-10-23 0.1

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Package lacunaritycovariance updated to version 1.1-1 with previous version 1.1-0 dated 2020-09-07

Title: Gliding Box Lacunarity and Other Metrics for 2D Random Closed Sets
Description: Functions for estimating the gliding box lacunarity (GBL), covariance, and pair-correlation of a random closed set (RACS) in 2D from a binary coverage map (e.g. presence-absence land cover maps). Contains a number of newly-developed covariance-based estimators of GBL (Hingee et al., 2019) <doi:10.1007/s13253-019-00351-9> and balanced estimators, proposed by Picka (2000) <http://www.jstor.org/stable/1428408>, for covariance, centred covariance, and pair-correlation. Also contains methods for estimating contagion-like properties of RACS and simulating 2D Boolean models. Binary coverage maps are usually represented as raster images with pixel values of TRUE, FALSE or NA, with NA representing unobserved pixels. A demo for extracting such a binary map from a geospatial data format is provided. Binary maps may also be represented using polygonal sets as the foreground, however for most computations such maps are converted into raster images. The package is based on research conducted during the author's PhD studies.
Author: Kassel Liam Hingee
Maintainer: Kassel Liam Hingee <kassel.hingee@gmail.com>

Diff between lacunaritycovariance versions 1.1-0 dated 2020-09-07 and 1.1-1 dated 2021-03-24

 DESCRIPTION                            |   11 
 MD5                                    |  148 +++++------
 NAMESPACE                              |    3 
 NEWS                                   |   52 ++--
 R/ccvc.R                               |  188 +++++++--------
 R/contagdiscstate.R                    |    4 
 R/contagpixelgrid.R                    |  260 ++++++++++----------
 R/coverageprob.R                       |    3 
 R/cppicka.R                            |  176 +++++++-------
 R/gbl.R                                |    4 
 R/gblc.R                               |    2 
 R/gblcc.R                              |    2 
 R/gblemp.R                             |  248 +++++++++----------
 R/gblg.R                               |    2 
 R/innerprodim.R                        |    2 
 R/isbinarymap.R                        |   64 ++---
 R/pcln.R                               |  282 +++++++++++-----------
 R/placegrainsfromlib.R                 |    4 
 R/plugincvc.R                          |    2 
 R/racscovariance.R                     |  322 ++++++++++++-------------
 R/rbdd.R                               |    2 
 R/rbdr.R                               |    4 
 R/rblnd.R                              |    6 
 R/rbpto.R                              |    2 
 R/secondorderprops.R                   |    6 
 R/summaryimlist.R                      |  100 ++++----
 README.md                              |   94 +++----
 build/partial.rdb                      |binary
 build/vignette.rds                     |binary
 demo/00Index                           |    4 
 demo/import_remote_sense_data.R        |  190 +++++++--------
 inst/CITATION                          |   36 +-
 inst/doc/estimate_RACS_properties.Rnw  |  260 ++++++++++----------
 inst/doc/estimate_RACS_properties.pdf  |binary
 inst/extdata/aregionofinterest.qpj     |    2 
 man/cencovariance.Rd                   |  224 ++++++++---------
 man/contagdiscstate.Rd                 |    4 
 man/contagpixelgrid.Rd                 |  130 +++++-----
 man/coverageprob.Rd                    |  100 ++++----
 man/cppicka.Rd                         |  108 ++++----
 man/gbl.Rd                             |    4 
 man/gblc.Rd                            |    2 
 man/gblcc.Rd                           |    2 
 man/gblemp.Rd                          |  120 ++++-----
 man/gblg.Rd                            |    2 
 man/innerprod.im.Rd                    |    2 
 man/isbinarymap.Rd                     |   60 ++--
 man/lacunaritycovariance-package.Rd    |  168 ++++++-------
 man/paircorr.Rd                        |  230 +++++++++---------
 man/placegrainsfromlib.Rd              |    4 
 man/plugincvc.Rd                       |    2 
 man/racscovariance.Rd                  |  288 +++++++++++------------
 man/rbdd.Rd                            |    2 
 man/rbdr.Rd                            |    4 
 man/rblnd.Rd                           |    6 
 man/rbpto.Rd                           |    2 
 man/secondorderprops.Rd                |  114 ++++-----
 man/summary.imlist.Rd                  |   72 ++---
 tests/run_testthattests.R              |    6 
 tests/testthat/helper-calccovar.R      |   58 ++--
 tests/testthat/test-contagdiscstate.R  |   40 +--
 tests/testthat/test-contagpixels.R     |  204 ++++++++--------
 tests/testthat/test-covar.R            |  212 ++++++++--------
 tests/testthat/test-cppicka.R          |   76 +++---
 tests/testthat/test-gbl.R              |  412 ++++++++++++++++-----------------
 tests/testthat/test-imbinaryops.R      |   38 +--
 tests/testthat/test-innerprod.R        |   78 +++---
 tests/testthat/test-rbdd.R             |   70 ++---
 tests/testthat/test-rbdr.R             |   74 ++---
 tests/testthat/test-rblndr.R           |   16 -
 tests/testthat/test-rbpto.R            |   98 +++----
 tests/testthat/test-secondorderprops.R |  272 ++++++++++-----------
 tests/testthat/test-summaryimlist.R    |   46 +--
 tests/testthat/test-xiinputs.R         |  166 ++++++-------
 vignettes/estimate_RACS_properties.Rnw |  260 ++++++++++----------
 75 files changed, 3134 insertions(+), 3127 deletions(-)

More information about lacunaritycovariance at CRAN
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New package chicane with initial version 0.1.4
Package: chicane
Title: Capture Hi-C Analysis Engine
Type: Package
Version: 0.1.4
Date: 2021-03-17
Authors@R: c( person("Erle", "Holgersen", role = c("aut", "cre"), email = "erle.holgersen@gmail.com"), person("Olivia", "Leavy", role = "aut"), person("Olivia", "Fletcher", role = "aut"), person("Frank", "Dudbridge", role = "aut"), person("Syed", "Haider", role = "aut") )
Author: Erle Holgersen [aut, cre], Olivia Leavy [aut], Olivia Fletcher [aut], Frank Dudbridge [aut], Syed Haider [aut]
Maintainer: Erle Holgersen <erle.holgersen@gmail.com>
Description: Toolkit for processing and calling interactions in capture Hi-C data. Converts BAM files into counts of reads linking restriction fragments, and identifies pairs of fragments that interact more than expected by chance. Significant interactions are identified by comparing the observed read count to the expected background rate from a count regression model.
Depends: R (>= 3.5.0), gamlss.tr, gamlss, data.table
License: GPL-2
Encoding: UTF-8
LazyData: true
biocViews:
Imports: MASS, stats, foreach, doParallel, iterators, bedr, knitr, rmarkdown
SystemRequirements: bedtools
Suggests: testthat, GenomicInteractions, GenomicRanges, Gviz, countreg
Additional_repositories: http://R-Forge.R-project.org/
VignetteBuilder: knitr
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-03-17 17:22:44 UTC; shaider
Repository: CRAN
Date/Publication: 2021-03-24 13:30:06 UTC

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New package TREXr with initial version 1.0.0
Package: TREXr
Title: Tree Sap Flow Extractor
Version: 1.0.0
Authors@R: c( person( 'Richard', 'Peters', email = 'richardlouispeters3@hotmail.com', role = c('cre', 'aut', 'cph'), comment=c(ORCID = '0000-0002-7441-1297')), person( 'Christoforos', 'Pappas', role = c('aut', 'ctb'), comment=c(ORCID = '0000-0001-5721-557X')), person( 'Alexander', 'Hurley', email = 'agl.hurley@gmail.com', role = c('aut', 'cph'), comment=c(ORCID = '0000-0002-9641-2805')), person( 'Rafael', 'Poyatos', role = c('ctb')), person( 'Victor', 'Flo', role = c('ctb')), person( 'Roman', 'Zweifel', role = c('ctb')), person( 'Willem', 'Goossens', role = c('ctb')), person( 'Kathy', 'Steppe', role = c('ths', 'etr', 'fnd')) )
Description: Performs data assimilation, processing and analyses on sap flow data obtained with the thermal dissipation method (TDM). The package includes functions for gap filling time-series data, detecting outliers, calculating data-processing uncertainties and generating uniform data output and visualisation. The package is designed to deal with large quantities of data and to apply commonly used data-processing methods. The functions have been validated on data collected from different tree species across the northern hemisphere (Peters et al. 2018 <doi:10.1111/nph.15241>).
License: MIT + file LICENSE
LazyData: true
URL: https://the-hull.github.io/TREX/
BugReports: https://github.com/the-Hull/TREX/issues
Encoding: UTF-8
Depends: R (>= 3.5.0)
Imports: chron, zoo, solaR, stats, graphics, lubridate, utils, grDevices, lhs, doParallel, foreach, tibble, dplyr, sensitivity, randtoolbox, boot, doSNOW, msm, parallel, magrittr, tools
RoxygenNote: 7.1.1
Suggests: shiny, plotly
NeedsCompilation: no
Packaged: 2021-03-18 21:12:29 UTC; ahurl
Author: Richard Peters [cre, aut, cph] (<https://orcid.org/0000-0002-7441-1297>), Christoforos Pappas [aut, ctb] (<https://orcid.org/0000-0001-5721-557X>), Alexander Hurley [aut, cph] (<https://orcid.org/0000-0002-9641-2805>), Rafael Poyatos [ctb], Victor Flo [ctb], Roman Zweifel [ctb], Willem Goossens [ctb], Kathy Steppe [ths, etr, fnd]
Maintainer: Richard Peters <richardlouispeters3@hotmail.com>
Repository: CRAN
Date/Publication: 2021-03-24 10:10:02 UTC

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New package rcompendium with initial version 0.5.1
Package: rcompendium
Type: Package
Title: Create a Package or Research Compendium Structure
Version: 0.5.1
Authors@R: c( person(given = "Nicolas", family = "Casajus", role = c("aut", "cre", "cph"), email = "nicolas.casajus@fondationbiodiversite.fr", comment = c(ORCID = "0000-0002-5537-5294")))
Description: Makes easier the creation of R package or research compendium (i.e. a predefined files/folders structure) so that users can focus on the code/analysis instead of wasting time organizing files. A full ready-to-work structure is set up with some additional features: version control, remote repository creation, CI/CD configuration (check package integrity under several OS, test code with 'testthat', and build and deploy website using 'pkgdown'). This package heavily relies on the R packages 'devtools' and 'usethis' and follows recommendations made by Wickham H. (2015) <ISBN:9781491910597> and Marwick B. et al. (2018) <doi:10.7287/peerj.preprints.3192v2>.
URL: https://github.com/FRBCesab/rcompendium
BugReports: https://github.com/FRBCesab/rcompendium/issues
License: GPL (>= 2)
Encoding: UTF-8
LazyData: true
Depends: R (>= 2.10)
Imports: clisymbols, crayon, devtools, gert, gh, gtools, rmarkdown, rstudioapi, stringr, usethis, utils, xfun
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Suggests: fs, knitr, remotes, testthat (>= 3.0.0), withr
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2021-03-23 18:01:36 UTC; nicolascasajus
Author: Nicolas Casajus [aut, cre, cph] (<https://orcid.org/0000-0002-5537-5294>)
Maintainer: Nicolas Casajus <nicolas.casajus@fondationbiodiversite.fr>
Repository: CRAN
Date/Publication: 2021-03-24 10:20:02 UTC

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New package bardr with initial version 0.0.9
Package: bardr
Type: Package
Title: Complete Works of William Shakespeare in Tidy Format
Version: 0.0.9
Authors@R: person("Zane", "Billings", email = "wz.billings@gmail.com", role = c("aut", "cre"))
Maintainer: Zane Billings <wz.billings@gmail.com>
Description: Provides R data structures for Shakespeare's complete works, as provided by Project Gutenberg <https:www.gutenberg.org/ebooks/100>.
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.6.0)
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2021-03-23 16:08:55 UTC; zanebillings
Author: Zane Billings [aut, cre]
Repository: CRAN
Date/Publication: 2021-03-24 09:20:02 UTC

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New package strucchangeRcpp with initial version 1.5-3-1.0.0
Package: strucchangeRcpp
Version: 1.5-3-1.0.0
Date: 2021-03-12
Title: Testing, Monitoring, and Dating Structural Changes: C++ Version
Authors@R: c(person(given = "Dainius", family = "Masiliunas", role = c("aut", "cre"), email = "pastas4@gmail.com", comment = c(ORCID = "0000-0001-5654-1277")), person(given = "Achim", family = "Zeileis", role = c("aut"), email = "Achim.Zeileis@R-project.org", comment = c(ORCID = "0000-0003-0918-3766")), person(given = "Marius", family = "Appel", role = "aut", email = "marius.appel@uni-muenster.de"), person(given = "Friedrich", family = "Leisch", role = "aut", email = "Friedrich.Leisch@R-project.org"), person(given = "Kurt", family = "Hornik", role = "aut", email = "Kurt.Hornik@R-project.org"), person(given = "Christian", family = "Kleiber", role = "aut", email = "Christian.Kleiber@unibas.ch"), person(given = "Andrei", family = "Mirt", role = "ctb", email = "andrei.mirt@wur.nl", comment = c(ORCID = "0000-0003-3654-2090")), person(given = "Bruce", family = "Hansen", role = "ctb"), person(given = c("Edgar", "C."), family = "Merkle", role = "ctb"))
Description: A fast implementation with additional experimental features for testing, monitoring and dating structural changes in (linear) regression models. 'strucchangeRcpp' features tests/methods from the generalized fluctuation test framework as well as from the F test (Chow test) framework. This includes methods to fit, plot and test fluctuation processes (e.g. cumulative/moving sum, recursive/moving estimates) and F statistics, respectively. These methods are described in Zeileis et al. (2002) <doi:10.18637/jss.v007.i02>. Finally, the breakpoints in regression models with structural changes can be estimated together with confidence intervals, and their magnitude as well as the model fit can be evaluated using a variety of statistical measures.
LazyData: yes
LinkingTo: Rcpp, RcppArmadillo
Depends: R (>= 2.10.0), zoo, sandwich
Suggests: stats4, car, dynlm, e1071, foreach, lmtest, mvtnorm, tseries
Imports: graphics, stats, Rcpp (>= 0.12.7), utils
License: GPL-2 | GPL-3
URL: https://github.com/bfast2/strucchangeRcpp/
BugReports: https://github.com/bfast2/strucchangeRcpp/issues
NeedsCompilation: yes
Packaged: 2021-03-23 10:41:18 UTC; dainius
Author: Dainius Masiliunas [aut, cre] (<https://orcid.org/0000-0001-5654-1277>), Achim Zeileis [aut] (<https://orcid.org/0000-0003-0918-3766>), Marius Appel [aut], Friedrich Leisch [aut], Kurt Hornik [aut], Christian Kleiber [aut], Andrei Mirt [ctb] (<https://orcid.org/0000-0003-3654-2090>), Bruce Hansen [ctb], Edgar C. Merkle [ctb]
Maintainer: Dainius Masiliunas <pastas4@gmail.com>
Repository: CRAN
Date/Publication: 2021-03-24 08:50:02 UTC

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New package GetDFPData2 with initial version 0.5
Package: GetDFPData2
Title: Reading Annual and Quarterly Financial Reports from B3
Version: 0.5
Date: 2021-03-19
Authors@R: c(person("Marcelo", "Perlin", email = "marceloperlin@gmail.com", role = c("aut", "cre")), person("Guilherme", "Kirch", email = "guilhermekirch@gmail.com", role = c("aut")))
Description: Reads annual and quarterly financial reports from companies traded at B3, the Brazilian exchange <http://www.b3.com.br/>. All data is downloaded and imported from CVM's public ftp site <http://dados.cvm.gov.br/dados/CIA_ABERTA/>.
Depends: R (>= 3.5.0)
Imports: stringr, xml2, dplyr, readr, curl, lubridate, magrittr, purrr, memoise, rvest, tidyr, RCurl, shiny, writexl
ByteCompile: true
License: GPL-2
BugReports: https://github.com/msperlin/GetDFPData2/issues
URL: https://github.com/msperlin/GetDFPData2/
LazyData: true
RoxygenNote: 7.1.1
Suggests: knitr, rmarkdown, testthat, ggplot2, covr
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-03-23 12:41:07 UTC; msperlin
Author: Marcelo Perlin [aut, cre], Guilherme Kirch [aut]
Maintainer: Marcelo Perlin <marceloperlin@gmail.com>
Repository: CRAN
Date/Publication: 2021-03-24 08:50:07 UTC

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Package ipify (with last version 0.2.0) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-04-07 0.2.0

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Package chicane (with last version 0.1.3) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2021-01-13 0.1.3
2020-07-27 0.1.2
2019-10-01 0.1.1
2018-08-30 0.1.0

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Package ArrayBin (with last version 0.2) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-06-21 0.2
2013-02-01 0.1

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Package GiANT (with last version 1.3.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2020-09-29 1.3.1
2020-05-04 1.3

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Package brt (with last version 1.3.0) was removed from CRAN

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2018-05-01 1.3.0
2018-04-12 1.2.0
2017-03-03 1.1.0

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Package RTTWebClient (with last version 0.1.1) was removed from CRAN

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2021-03-09 0.1.1

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Package plumber updated to version 1.1.0 with previous version 1.0.0 dated 2020-09-14

Title: An API Generator for R
Description: Gives the ability to automatically generate and serve an HTTP API from R functions using the annotations in the R documentation around your functions.
Author: Barret Schloerke [cre, aut], Jeff Allen [aut, ccp], Bruno Tremblay [ctb], Frans van Dunné [ctb], Sebastiaan Vandewoude [ctb], RStudio [cph, fnd]
Maintainer: Barret Schloerke <barret@rstudio.com>

Diff between plumber versions 1.0.0 dated 2020-09-14 and 1.1.0 dated 2021-03-24

 plumber-1.0.0/plumber/R/plumber-options.R                        |only
 plumber-1.1.0/plumber/DESCRIPTION                                |   15 
 plumber-1.1.0/plumber/MD5                                        |  124 +--
 plumber-1.1.0/plumber/NAMESPACE                                  |    3 
 plumber-1.1.0/plumber/NEWS.md                                    |   61 +
 plumber-1.1.0/plumber/R/default-handlers.R                       |   22 
 plumber-1.1.0/plumber/R/includes.R                               |    2 
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 plumber-1.1.0/plumber/R/options_plumber.R                        |only
 plumber-1.1.0/plumber/R/parse-body.R                             |   26 
 plumber-1.1.0/plumber/R/plumb-block.R                            |   69 +
 plumber-1.1.0/plumber/R/plumb-globals.R                          |   40 -
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 plumber-1.1.0/plumber/R/plumber-step.R                           |   44 -
 plumber-1.1.0/plumber/R/plumber.R                                |  365 +++++++---
 plumber-1.1.0/plumber/R/pr.R                                     |   54 +
 plumber-1.1.0/plumber/R/pr_set.R                                 |   42 -
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 plumber-1.1.0/plumber/tests/testthat/test-serializer-feather.R   |    9 
 plumber-1.1.0/plumber/tests/testthat/test-zzz-openapi.R          |   28 
 plumber-1.1.0/plumber/tests/testthat/test-zzz-plumb_api.R        |   68 +
 67 files changed, 1385 insertions(+), 501 deletions(-)

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