Fri, 01 Dec 2023

Package vars updated to version 1.6-0 with previous version 1.5-9 dated 2023-03-22

Title: VAR Modelling
Description: Estimation, lag selection, diagnostic testing, forecasting, causality analysis, forecast error variance decomposition and impulse response functions of VAR models and estimation of SVAR and SVEC models.
Author: Bernhard Pfaff [aut, cre], Matthieu Stigler [ctb]
Maintainer: Bernhard Pfaff <bernhard@pfaffikus.de>

Diff between vars versions 1.5-9 dated 2023-03-22 and 1.6-0 dated 2023-12-01

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Package isotree updated to version 0.5.24-3 with previous version 0.5.24-2 dated 2023-12-01

Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>), extended isolation forest (Hariri, Kind, Brunner (2018) <arXiv:1811.02141>), SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>), fair-cut forest (Cortes (2021) <arXiv:2110:13402>), robust random-cut forest (Guha, Mishra, Roy, Schrijvers (2016) <http://proceedings.mlr.press/v48/guha16.html>), and customizable variations of them, for isolation-based outlier detection, clustered outlier detection, distance or similarity approximation (Cortes (2019) <arXiv:1910.12362>), isolation kernel calculation (Ting, Zhu, Zhou (2018) <doi:10.1145/3219819.3219990>), and imputation of missing values (Cortes (2019) <arXiv:1911.06646>), based on random or guided decision tree splitting, and providing different metrics for scoring anomalies based on isolation depth or density (Cortes (2021) <arXiv:2111.11639>). Provides simp [...truncated...]
Author: David Cortes [aut, cre, cph], Thibaut Goetghebuer-Planchon [cph] , David Blackman [cph] , Sebastiano Vigna [cph] , NumPy Developers [cph] , SciPy Developers [cph] , Enthought Inc [cph] , Stephen Moshier [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>

Diff between isotree versions 0.5.24-2 dated 2023-12-01 and 0.5.24-3 dated 2023-12-01

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Package arrow updated to version 14.0.0.2 with previous version 14.0.0.1 dated 2023-11-24

Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language development platform for in-memory data. It specifies a standardized language-independent columnar memory format for flat and hierarchical data, organized for efficient analytic operations on modern hardware. This package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut], Ian Cook [aut], Nic Crane [aut, cre], Dewey Dunnington [aut] , Romain Francois [aut] , Jonathan Keane [aut], Dragoș Moldovan-Gruenfeld [aut], Jeroen Ooms [aut], Jacob Wujciak-Jens [aut], Javier Luraschi [ctb], Karl Dunkle Werner [...truncated...]
Maintainer: Nic Crane <thisisnic@gmail.com>

Diff between arrow versions 14.0.0.1 dated 2023-11-24 and 14.0.0.2 dated 2023-12-01

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Package rlecuyer updated to version 0.3-8 with previous version 0.3-7 dated 2023-03-24

Title: R Interface to RNG with Multiple Streams
Description: Provides an interface to the C implementation of the random number generator with multiple independent streams developed by L'Ecuyer et al (2002). The main purpose of this package is to enable the use of this random number generator in parallel R applications.
Author: Hana Sevcikova [aut, cre], Tony Rossini [aut], Pierre L'Ecuyer [cph]
Maintainer: Hana Sevcikova <hanas@uw.edu>

Diff between rlecuyer versions 0.3-7 dated 2023-03-24 and 0.3-8 dated 2023-12-01

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Package revdbayes updated to version 1.5.3 with previous version 1.5.2 dated 2023-09-09

Title: Ratio-of-Uniforms Sampling for Bayesian Extreme Value Analysis
Description: Provides functions for the Bayesian analysis of extreme value models. The 'rust' package <https://cran.r-project.org/package=rust> is used to simulate a random sample from the required posterior distribution. The functionality of 'revdbayes' is similar to the 'evdbayes' package <https://cran.r-project.org/package=evdbayes>, which uses Markov Chain Monte Carlo ('MCMC') methods for posterior simulation. In addition, there are functions for making inferences about the extremal index, using the models for threshold inter-exceedance times of Suveges and Davison (2010) <doi:10.1214/09-AOAS292> and Holesovsky and Fusek (2020) <doi:10.1007/s10687-020-00374-3>. Also provided are d,p,q,r functions for the Generalised Extreme Value ('GEV') and Generalised Pareto ('GP') distributions that deal appropriately with cases where the shape parameter is very close to zero.
Author: Paul J. Northrop [aut, cre, cph], Scott D. Grimshaw [ctb]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>

Diff between revdbayes versions 1.5.2 dated 2023-09-09 and 1.5.3 dated 2023-12-01

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Package rbedrock updated to version 0.3.2 with previous version 0.3.1 dated 2023-10-12

Title: Analysis and Manipulation of Data from Minecraft Bedrock Edition
Description: Implements an interface to Minecraft (Bedrock Edition) worlds. Supports the analysis and management of these worlds and game saves.
Author: Reed Cartwright [aut, cre] , Rich FitzJohn [ctb], Christian Stigen Larsen [ctb], The LevelDB Authors [cph]
Maintainer: Reed Cartwright <racartwright@gmail.com>

Diff between rbedrock versions 0.3.1 dated 2023-10-12 and 0.3.2 dated 2023-12-01

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Package oce updated to version 1.8-2 with previous version 1.8-1 dated 2023-06-29

Title: Analysis of Oceanographic Data
Description: Supports the analysis of Oceanographic data, including 'ADCP' measurements, measurements made with 'argo' floats, 'CTD' measurements, sectional data, sea-level time series, coastline and topographic data, etc. Provides specialized functions for calculating seawater properties such as potential temperature in either the 'UNESCO' or 'TEOS-10' equation of state. Produces graphical displays that conform to the conventions of the Oceanographic literature. This package is discussed extensively by Kelley (2018) "Oceanographic Analysis with R" <doi:10.1007/978-1-4939-8844-0>.
Author: Dan Kelley [aut, cre] , Clark Richards [aut] , Chantelle Layton [ctb] coauthor), British Geological Survey [ctb, cph]
Maintainer: Dan Kelley <Dan.Kelley@Dal.Ca>

Diff between oce versions 1.8-1 dated 2023-06-29 and 1.8-2 dated 2023-12-01

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 oce-1.8-2/oce/man/argo-class.Rd                          |    2 
 oce-1.8-2/oce/man/argo.Rd                                |    7 
 oce-1.8-2/oce/man/argoGrid.Rd                            |   12 
 oce-1.8-2/oce/man/argoJuldToTime.Rd                      |    4 
 oce-1.8-2/oce/man/as.adp.Rd                              |    6 
 oce-1.8-2/oce/man/as.argo.Rd                             |    2 
 oce-1.8-2/oce/man/as.cm.Rd                               |    8 
 oce-1.8-2/oce/man/as.coastline.Rd                        |    2 
 oce-1.8-2/oce/man/as.ctd.Rd                              |   22 
 oce-1.8-2/oce/man/as.echosounder.Rd                      |    2 
 oce-1.8-2/oce/man/as.gps.Rd                              |    2 
 oce-1.8-2/oce/man/as.ladp.Rd                             |    2 
 oce-1.8-2/oce/man/as.lisst.Rd                            |    3 
 oce-1.8-2/oce/man/as.lobo.Rd                             |    2 
 oce-1.8-2/oce/man/as.met.Rd                              |    2 
 oce-1.8-2/oce/man/as.oce.Rd                              |    4 
 oce-1.8-2/oce/man/as.rsk.Rd                              |    2 
 oce-1.8-2/oce/man/as.sealevel.Rd                         |    6 
 oce-1.8-2/oce/man/as.section.Rd                          |    2 
 oce-1.8-2/oce/man/as.tidem.Rd                            |  116 
 oce-1.8-2/oce/man/as.topo.Rd                             |    4 
 oce-1.8-2/oce/man/as.unit.Rd                             |    4 
 oce-1.8-2/oce/man/as.windrose.Rd                         |   11 
 oce-1.8-2/oce/man/as.xbt.Rd                              |    4 
 oce-1.8-2/oce/man/bcdToInteger.Rd                        |    4 
 oce-1.8-2/oce/man/beamName.Rd                            |    4 
 oce-1.8-2/oce/man/beamToXyz.Rd                           |    2 
 oce-1.8-2/oce/man/beamToXyzAdp.Rd                        |    2 
 oce-1.8-2/oce/man/beamToXyzAdpAD2CP.Rd                   |    2 
 oce-1.8-2/oce/man/beamToXyzAdv.Rd                        |    2 
 oce-1.8-2/oce/man/beamUnspreadAdp.Rd                     |   18 
 oce-1.8-2/oce/man/binApply1D.Rd                          |    4 
 oce-1.8-2/oce/man/binApply2D.Rd                          |    2 
 oce-1.8-2/oce/man/binAverage.Rd                          |   14 
 oce-1.8-2/oce/man/binCount1D.Rd                          |    2 
 oce-1.8-2/oce/man/binCount2D.Rd                          |    2 
 oce-1.8-2/oce/man/binMean1D.Rd                           |    4 
 oce-1.8-2/oce/man/binMean2D.Rd                           |   10 
 oce-1.8-2/oce/man/binmapAdp.Rd                           |   18 
 oce-1.8-2/oce/man/bound125.Rd                            |    4 
 oce-1.8-2/oce/man/byteToBinary.Rd                        |    4 
 oce-1.8-2/oce/man/cm.Rd                                  |    2 
 oce-1.8-2/oce/man/cnvName2oceName.Rd                     |    3 
 oce-1.8-2/oce/man/coastlineCut.Rd                        |    5 
 oce-1.8-2/oce/man/coastlineWorld.Rd                      |    2 
 oce-1.8-2/oce/man/colormap.Rd                            |   61 
 oce-1.8-2/oce/man/colormapGMT.Rd                         |    2 
 oce-1.8-2/oce/man/composite-amsr-method.Rd               |    2 
 oce-1.8-2/oce/man/composite.Rd                           |    2 
 oce-1.8-2/oce/man/computableWaterProperties.Rd           |   42 
 oce-1.8-2/oce/man/concatenate-adp-method.Rd              |    2 
 oce-1.8-2/oce/man/concatenate-list-method.Rd             |    4 
 oce-1.8-2/oce/man/concatenate-oce-method.Rd              |    2 
 oce-1.8-2/oce/man/concatenate.Rd                         |    4 
 oce-1.8-2/oce/man/coriolis.Rd                            |    2 
 oce-1.8-2/oce/man/ctd-class.Rd                           |    9 
 oce-1.8-2/oce/man/ctd.Rd                                 |   10 
 oce-1.8-2/oce/man/ctd.cnv.gz.Rd                          |    7 
 oce-1.8-2/oce/man/ctdDecimate.Rd                         |   17 
 oce-1.8-2/oce/man/ctdFindProfiles.Rd                     |   16 
 oce-1.8-2/oce/man/ctdFindProfilesRBR.Rd                  |    3 
 oce-1.8-2/oce/man/ctdRaw.Rd                              |    3 
 oce-1.8-2/oce/man/ctdRepair.Rd                           |    5 
 oce-1.8-2/oce/man/ctdTrim.Rd                             |    9 
 oce-1.8-2/oce/man/ctd_aml.csv.gz.Rd                      |    3 
 oce-1.8-2/oce/man/ctimeToSeconds.Rd                      |   12 
 oce-1.8-2/oce/man/curl.Rd                                |   27 
 oce-1.8-2/oce/man/d200321-001.ctd.gz.Rd                  |    7 
 oce-1.8-2/oce/man/d201211_0011.cnv.gz.Rd                 |    7 
 oce-1.8-2/oce/man/dataLabel.Rd                           |    7 
 oce-1.8-2/oce/man/decimate.Rd                            |    4 
 oce-1.8-2/oce/man/decodeHeaderNortek.Rd                  |    3 
 oce-1.8-2/oce/man/defaultFlags.Rd                        |    2 
 oce-1.8-2/oce/man/despike.Rd                             |   20 
 oce-1.8-2/oce/man/detrend.Rd                             |   14 
 oce-1.8-2/oce/man/download.amsr.Rd                       |   90 
 oce-1.8-2/oce/man/download.coastline.Rd                  |    7 
 oce-1.8-2/oce/man/download.met.Rd                        |    7 
 oce-1.8-2/oce/man/download.topo.Rd                       |    7 
 oce-1.8-2/oce/man/drawDirectionField.Rd                  |   21 
 oce-1.8-2/oce/man/drawPalette.Rd                         |   40 
 oce-1.8-2/oce/man/echosounder.Rd                         |    2 
 oce-1.8-2/oce/man/eclipticalToEquatorial.Rd              |    2 
 oce-1.8-2/oce/man/enuToOther.Rd                          |    4 
 oce-1.8-2/oce/man/enuToOtherAdp.Rd                       |    6 
 oce-1.8-2/oce/man/equatorialToLocalHorizontal.Rd         |    2 
 oce-1.8-2/oce/man/errorbars.Rd                           |    4 
 oce-1.8-2/oce/man/fillGap.Rd                             |    2 
 oce-1.8-2/oce/man/firstFinite.Rd                         |   11 
 oce-1.8-2/oce/man/formatCI.Rd                            |   92 
 oce-1.8-2/oce/man/formatPosition.Rd                      |    4 
 oce-1.8-2/oce/man/fullFilename.Rd                        |    5 
 oce-1.8-2/oce/man/g1sst-class.Rd                         |    2 
 oce-1.8-2/oce/man/geodDist.Rd                            |    4 
 oce-1.8-2/oce/man/geodGc.Rd                              |   12 
 oce-1.8-2/oce/man/geodXy.Rd                              |   28 
 oce-1.8-2/oce/man/grad.Rd                                |   24 
 oce-1.8-2/oce/man/gravity.Rd                             |    2 
 oce-1.8-2/oce/man/handleFlags-adp-method.Rd              |   19 
 oce-1.8-2/oce/man/handleFlags-argo-method.Rd             |    8 
 oce-1.8-2/oce/man/handleFlags-ctd-method.Rd              |   30 
 oce-1.8-2/oce/man/handleFlags-oce-method.Rd              |    2 
 oce-1.8-2/oce/man/handleFlags-section-method.Rd          |    6 
 oce-1.8-2/oce/man/handleFlags-vector-method.Rd           |    4 
 oce-1.8-2/oce/man/handleFlags.Rd                         |    2 
 oce-1.8-2/oce/man/handleFlagsInternal.Rd                 |    2 
 oce-1.8-2/oce/man/imagep.Rd                              |   42 
 oce-1.8-2/oce/man/initialize-ctd-method.Rd               |    9 
 oce-1.8-2/oce/man/initializeFlagScheme-ctd-method.Rd     |    3 
 oce-1.8-2/oce/man/initializeFlagScheme-oce-method.Rd     |    2 
 oce-1.8-2/oce/man/initializeFlagScheme-section-method.Rd |   10 
 oce-1.8-2/oce/man/initializeFlagScheme.Rd                |    2 
 oce-1.8-2/oce/man/initializeFlagSchemeInternal.Rd        |    2 
 oce-1.8-2/oce/man/initializeFlags-adp-method.Rd          |    2 
 oce-1.8-2/oce/man/initializeFlags-oce-method.Rd          |    2 
 oce-1.8-2/oce/man/initializeFlags.Rd                     |    2 
 oce-1.8-2/oce/man/initializeFlagsInternal.Rd             |    2 
 oce-1.8-2/oce/man/integerToAscii.Rd                      |    4 
 oce-1.8-2/oce/man/integrateTrapezoid.Rd                  |    4 
 oce-1.8-2/oce/man/interpBarnes.Rd                        |   26 
 oce-1.8-2/oce/man/is.ad2cp.Rd                            |    4 
 oce-1.8-2/oce/man/julianCenturyAnomaly.Rd                |    6 
 oce-1.8-2/oce/man/julianDay.Rd                           |    4 
 oce-1.8-2/oce/man/labelWithUnit.Rd                       |   14 
 oce-1.8-2/oce/man/landsat-class.Rd                       |    2 
 oce-1.8-2/oce/man/landsat.Rd                             |    2 
 oce-1.8-2/oce/man/latFormat.Rd                           |    2 
 oce-1.8-2/oce/man/latlonFormat.Rd                        |    2 
 oce-1.8-2/oce/man/lisst.Rd                               |    2 
 oce-1.8-2/oce/man/lobo.Rd                                |    2 
 oce-1.8-2/oce/man/locationForGsw.Rd                      |    2 
 oce-1.8-2/oce/man/lon360.Rd                              |    2 
 oce-1.8-2/oce/man/lonFormat.Rd                           |    2 
 oce-1.8-2/oce/man/lonlat2map.Rd                          |    4 
 oce-1.8-2/oce/man/lookWithin.Rd                          |   10 
 oce-1.8-2/oce/man/lowpass.Rd                             |   18 
 oce-1.8-2/oce/man/magneticField.Rd                       |   53 
 oce-1.8-2/oce/man/makeFilter.Rd                          |   49 
 oce-1.8-2/oce/man/map2lonlat.Rd                          |    4 
 oce-1.8-2/oce/man/mapArrows.Rd                           |    8 
 oce-1.8-2/oce/man/mapAxis.Rd                             |   12 
 oce-1.8-2/oce/man/mapContour.Rd                          |    9 
 oce-1.8-2/oce/man/mapCoordinateSystem.Rd                 |   17 
 oce-1.8-2/oce/man/mapDirectionField.Rd                   |    9 
 oce-1.8-2/oce/man/mapGrid.Rd                             |    8 
 oce-1.8-2/oce/man/mapImage.Rd                            |    9 
 oce-1.8-2/oce/man/mapLines.Rd                            |   14 
 oce-1.8-2/oce/man/mapLongitudeLatitudeXY.Rd              |    6 
 oce-1.8-2/oce/man/mapPlot.Rd                             |   97 
 oce-1.8-2/oce/man/mapPoints.Rd                           |    6 
 oce-1.8-2/oce/man/mapPolygon.Rd                          |   20 
 oce-1.8-2/oce/man/mapScalebar.Rd                         |    8 
 oce-1.8-2/oce/man/mapText.Rd                             |   12 
 oce-1.8-2/oce/man/mapTissot.Rd                           |   12 
 oce-1.8-2/oce/man/matchBytes.Rd                          |    2 
 oce-1.8-2/oce/man/matrixShiftLongitude.Rd                |    2 
 oce-1.8-2/oce/man/matrixSmooth.Rd                        |   12 
 oce-1.8-2/oce/man/met.Rd                                 |    2 
 oce-1.8-2/oce/man/metNames2oceNames.Rd                   |    2 
 oce-1.8-2/oce/man/moonAngle.Rd                           |   22 
 oce-1.8-2/oce/man/numberAsPOSIXct.Rd                     |   20 
 oce-1.8-2/oce/man/oce-deprecated.Rd                      |    4 
 oce-1.8-2/oce/man/oce.Rd                                 |   27 
 oce-1.8-2/oce/man/oce.as.raw.Rd                          |    4 
 oce-1.8-2/oce/man/oce.contour.Rd                         |    4 
 oce-1.8-2/oce/man/oce.grid.Rd                            |   12 
 oce-1.8-2/oce/man/oce.plot.ts.Rd                         |   16 
 oce-1.8-2/oce/man/oceApprox.Rd                           |    6 
 oce-1.8-2/oce/man/oceAxis.Rd                             |   12 
 oce-1.8-2/oce/man/oceCRS.Rd                              |   20 
 oce-1.8-2/oce/man/oceColors9B.Rd                         |    8 
 oce-1.8-2/oce/man/oceColorsCDOM.Rd                       |    8 
 oce-1.8-2/oce/man/oceColorsChlorophyll.Rd                |    8 
 oce-1.8-2/oce/man/oceColorsClosure.Rd                    |    8 
 oce-1.8-2/oce/man/oceColorsDensity.Rd                    |    8 
 oce-1.8-2/oce/man/oceColorsFreesurface.Rd                |    8 
 oce-1.8-2/oce/man/oceColorsGebco.Rd                      |    4 
 oce-1.8-2/oce/man/oceColorsJet.Rd                        |    6 
 oce-1.8-2/oce/man/oceColorsOxygen.Rd                     |    8 
 oce-1.8-2/oce/man/oceColorsPAR.Rd                        |    8 
 oce-1.8-2/oce/man/oceColorsPalette.Rd                    |    2 
 oce-1.8-2/oce/man/oceColorsPhase.Rd                      |    8 
 oce-1.8-2/oce/man/oceColorsSalinity.Rd                   |    8 
 oce-1.8-2/oce/man/oceColorsTemperature.Rd                |    8 
 oce-1.8-2/oce/man/oceColorsTurbidity.Rd                  |    8 
 oce-1.8-2/oce/man/oceColorsTurbo.Rd                      |    8 
 oce-1.8-2/oce/man/oceColorsTwo.Rd                        |    8 
 oce-1.8-2/oce/man/oceColorsVelocity.Rd                   |    8 
 oce-1.8-2/oce/man/oceColorsViridis.Rd                    |   12 
 oce-1.8-2/oce/man/oceColorsVorticity.Rd                  |    8 
 oce-1.8-2/oce/man/oceConvolve.Rd                         |   10 
 oce-1.8-2/oce/man/oceDebug.Rd                            |   20 
 oce-1.8-2/oce/man/oceDeleteData.Rd                       |    2 
 oce-1.8-2/oce/man/oceEdit.Rd                             |    8 
 oce-1.8-2/oce/man/oceFileTrim.Rd                         |    8 
 oce-1.8-2/oce/man/oceFilter.Rd                           |   18 
 oce-1.8-2/oce/man/oceGetData.Rd                          |    2 
 oce-1.8-2/oce/man/oceGetMetadata.Rd                      |    2 
 oce-1.8-2/oce/man/oceNames2whpNames.Rd                   |    1 
 oce-1.8-2/oce/man/ocePmatch.Rd                           |    6 
 oce-1.8-2/oce/man/oceRenameData.Rd                       |    2 
 oce-1.8-2/oce/man/oceRenameMetadata.Rd                   |    2 
 oce-1.8-2/oce/man/oceSetData.Rd                          |    5 
 oce-1.8-2/oce/man/oceSetMetadata.Rd                      |    2 
 oce-1.8-2/oce/man/oceSmooth.Rd                           |    4 
 oce-1.8-2/oce/man/oceSpectrum.Rd                         |   16 
 oce-1.8-2/oce/man/oceUnits2whpUnits.Rd                   |    3 
 oce-1.8-2/oce/man/ocecolors.Rd                           |    2 
 oce-1.8-2/oce/man/plot-adp-method.Rd                     |    8 
 oce-1.8-2/oce/man/plot-amsr-method.Rd                    |   39 
 oce-1.8-2/oce/man/plot-argo-method.Rd                    |   18 
 oce-1.8-2/oce/man/plot-cm-method.Rd                      |   21 
 oce-1.8-2/oce/man/plot-coastline-method.Rd               |   10 
 oce-1.8-2/oce/man/plot-ctd-method.Rd                     |   30 
 oce-1.8-2/oce/man/plot-echosounder-method.Rd             |    2 
 oce-1.8-2/oce/man/plot-met-method.Rd                     |   14 
 oce-1.8-2/oce/man/plot-oce-method.Rd                     |    6 
 oce-1.8-2/oce/man/plot-sealevel-method.Rd                |    6 
 oce-1.8-2/oce/man/plot-section-method.Rd                 |   16 
 oce-1.8-2/oce/man/plot-tidem-method.Rd                   |   17 
 oce-1.8-2/oce/man/plot-topo-method.Rd                    |    2 
 oce-1.8-2/oce/man/plot-windrose-method.Rd                |   32 
 oce-1.8-2/oce/man/plotInset.Rd                           |   18 
 oce-1.8-2/oce/man/plotPolar.Rd                           |    2 
 oce-1.8-2/oce/man/plotProfile.Rd                         |   37 
 oce-1.8-2/oce/man/plotScan.Rd                            |    5 
 oce-1.8-2/oce/man/plotSticks.Rd                          |    6 
 oce-1.8-2/oce/man/plotTS.Rd                              |   38 
 oce-1.8-2/oce/man/plotTaylor.Rd                          |    4 
 oce-1.8-2/oce/man/predict.tidem.Rd                       |   40 
 oce-1.8-2/oce/man/presentTime.Rd                         |    4 
 oce-1.8-2/oce/man/prettyPosition.Rd                      |    4 
 oce-1.8-2/oce/man/processingLog-set.Rd                   |    4 
 oce-1.8-2/oce/man/processingLogAppend.Rd                 |    4 
 oce-1.8-2/oce/man/processingLogItem.Rd                   |    2 
 oce-1.8-2/oce/man/processingLogShow.Rd                   |    4 
 oce-1.8-2/oce/man/pwelch.Rd                              |   32 
 oce-1.8-2/oce/man/rangeLimit.Rd                          |    2 
 oce-1.8-2/oce/man/read.adp.Rd                            |   35 
 oce-1.8-2/oce/man/read.adp.ad2cp.Rd                      |   42 
 oce-1.8-2/oce/man/read.adp.nortek.Rd                     |   44 
 oce-1.8-2/oce/man/read.adp.rdi.Rd                        |   37 
 oce-1.8-2/oce/man/read.adp.sontek.Rd                     |   35 
 oce-1.8-2/oce/man/read.adp.sontek.serial.Rd              |   35 
 oce-1.8-2/oce/man/read.adv.Rd                            |   35 
 oce-1.8-2/oce/man/read.adv.nortek.Rd                     |   35 
 oce-1.8-2/oce/man/read.adv.sontek.adr.Rd                 |   39 
 oce-1.8-2/oce/man/read.adv.sontek.serial.Rd              |   35 
 oce-1.8-2/oce/man/read.adv.sontek.text.Rd                |   35 
 oce-1.8-2/oce/man/read.amsr.Rd                           |   27 
 oce-1.8-2/oce/man/read.aquadopp.Rd                       |   35 
 oce-1.8-2/oce/man/read.aquadoppHR.Rd                     |   33 
 oce-1.8-2/oce/man/read.aquadoppProfiler.Rd               |   35 
 oce-1.8-2/oce/man/read.argo.Rd                           |   10 
 oce-1.8-2/oce/man/read.argo.copernicus.Rd                |    2 
 oce-1.8-2/oce/man/read.bremen.Rd                         |    2 
 oce-1.8-2/oce/man/read.cm.Rd                             |   17 
 oce-1.8-2/oce/man/read.coastline.Rd                      |    2 
 oce-1.8-2/oce/man/read.coastline.openstreetmap.Rd        |    2 
 oce-1.8-2/oce/man/read.coastline.shapefile.Rd            |    2 
 oce-1.8-2/oce/man/read.ctd.Rd                            |    6 
 oce-1.8-2/oce/man/read.ctd.aml.Rd                        |    6 
 oce-1.8-2/oce/man/read.ctd.itp.Rd                        |   10 
 oce-1.8-2/oce/man/read.ctd.odf.Rd                        |    7 
 oce-1.8-2/oce/man/read.ctd.odv.Rd                        |    5 
 oce-1.8-2/oce/man/read.ctd.saiv.Rd                       |only
 oce-1.8-2/oce/man/read.ctd.sbe.Rd                        |    8 
 oce-1.8-2/oce/man/read.ctd.ssda.Rd                       |    6 
 oce-1.8-2/oce/man/read.ctd.woce.Rd                       |    4 
 oce-1.8-2/oce/man/read.ctd.woce.other.Rd                 |    4 
 oce-1.8-2/oce/man/read.echosounder.Rd                    |    2 
 oce-1.8-2/oce/man/read.g1sst.Rd                          |   22 
 oce-1.8-2/oce/man/read.gps.Rd                            |    2 
 oce-1.8-2/oce/man/read.index.Rd                          |    7 
 oce-1.8-2/oce/man/read.lisst.Rd                          |    2 
 oce-1.8-2/oce/man/read.lobo.Rd                           |   16 
 oce-1.8-2/oce/man/read.met.Rd                            |   33 
 oce-1.8-2/oce/man/read.oce.Rd                            |    2 
 oce-1.8-2/oce/man/read.odf.Rd                            |   14 
 oce-1.8-2/oce/man/read.rsk.Rd                            |    4 
 oce-1.8-2/oce/man/read.sealevel.Rd                       |    2 
 oce-1.8-2/oce/man/read.section.Rd                        |    2 
 oce-1.8-2/oce/man/read.topo.Rd                           |    9 
 oce-1.8-2/oce/man/read.woa.Rd                            |    9 
 oce-1.8-2/oce/man/read.xbt.Rd                            |    2 
 oce-1.8-2/oce/man/read.xbt.edf.Rd                        |    4 
 oce-1.8-2/oce/man/read.xbt.noaa1.Rd                      |    2 
 oce-1.8-2/oce/man/rescale.Rd                             |   10 
 oce-1.8-2/oce/man/resizableLabel.Rd                      |    2 
 oce-1.8-2/oce/man/retime.Rd                              |    6 
 oce-1.8-2/oce/man/rotateAboutZ.Rd                        |   28 
 oce-1.8-2/oce/man/rsk.Rd                                 |    2 
 oce-1.8-2/oce/man/rskPatm.Rd                             |    2 
 oce-1.8-2/oce/man/rskToc.Rd                              |   14 
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Package ldbounds updated to version 2.0.2 with previous version 2.0.1 dated 2023-03-28

Title: Lan-DeMets Method for Group Sequential Boundaries
Description: Computations related to group sequential boundaries. Includes calculation of bounds using the Lan-DeMets alpha spending function approach. Based on FORTRAN program ld98 implemented by Reboussin, et al. (2000) <doi:10.1016/s0197-2456(00)00057-x>.
Author: Charlie Casper, Thomas Cook and Oscar A. Perez. Based on FORTRAN program ld98.
Maintainer: Charlie Casper <charlie.casper@hsc.utah.edu>

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Package vctrs updated to version 0.6.5 with previous version 0.6.4 dated 2023-10-12

Title: Vector Helpers
Description: Defines new notions of prototype and size that are used to provide tools for consistent and well-founded type-coercion and size-recycling, and are in turn connected to ideas of type- and size-stability useful for analysing function interfaces.
Author: Hadley Wickham [aut], Lionel Henry [aut], Davis Vaughan [aut, cre], data.table team [cph] and their contribution to R's order), Posit Software, PBC [cph, fnd]
Maintainer: Davis Vaughan <davis@posit.co>

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Package ipaddress updated to version 1.0.2 with previous version 1.0.1 dated 2023-04-04

Title: Data Analysis for IP Addresses and Networks
Description: Classes and functions for working with IP (Internet Protocol) addresses and networks, inspired by the Python 'ipaddress' module. Offers full support for both IPv4 and IPv6 (Internet Protocol versions 4 and 6) address spaces. It is specifically designed to work well with the 'tidyverse'.
Author: David Hall [aut, cre]
Maintainer: David Hall <david.hall.physics@gmail.com>

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Package stm updated to version 1.3.7 with previous version 1.3.6.1 dated 2023-08-21

Title: Estimation of the Structural Topic Model
Description: The Structural Topic Model (STM) allows researchers to estimate topic models with document-level covariates. The package also includes tools for model selection, visualization, and estimation of topic-covariate regressions. Methods developed in Roberts et. al. (2014) <doi:10.1111/ajps.12103> and Roberts et. al. (2016) <doi:10.1080/01621459.2016.1141684>. Vignette is Roberts et. al. (2019) <doi:10.18637/jss.v091.i02>.
Author: Margaret Roberts [aut], Brandon Stewart [aut, cre], Dustin Tingley [aut], Kenneth Benoit [ctb]
Maintainer: Brandon Stewart <bms4@princeton.edu>

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Package RCLabels updated to version 0.1.7 with previous version 0.1.4 dated 2023-04-25

Title: Manipulate Matrix Row and Column Labels with Ease
Description: Functions to assist manipulation of matrix row and column labels for all types of matrix mathematics where row and column labels are to be respected.
Author: Matthew Heun [aut, cre]
Maintainer: Matthew Heun <matthew.heun@me.com>

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Package PROJ updated to version 0.4.5 with previous version 0.4.0 dated 2020-10-19

Title: Generic Coordinate System Transformations Using 'PROJ'
Description: A wrapper around the generic coordinate transformation software 'PROJ' that transforms coordinates from one coordinate reference system ('CRS') to another. This includes cartographic projections as well as geodetic transformations. The intention is for this package to be used by user-packages such as 'reproj', and that the older 'PROJ.4' and version 5 pathways be provided by the 'proj4' package.
Author: Michael D. Sumner [aut, cre] , Jeroen Ooms [ctb] , Simon Urbanek [cph, ctb] , Dewey Dunnington [ctb]
Maintainer: Michael D. Sumner <mdsumner@gmail.com>

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Package matsbyname updated to version 0.6.7 with previous version 0.6.6 dated 2023-10-19

Title: An Implementation of Matrix Mathematics that Respects Row and Column Names
Description: An implementation of matrix mathematics wherein operations are performed "by name."
Author: Matthew Heun [aut, cre]
Maintainer: Matthew Heun <matthew.heun@me.com>

Diff between matsbyname versions 0.6.6 dated 2023-10-19 and 0.6.7 dated 2023-12-01

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Package iBreakDown updated to version 2.1.2 with previous version 2.0.1 dated 2021-05-07

Title: Model Agnostic Instance Level Variable Attributions
Description: Model agnostic tool for decomposition of predictions from black boxes. Supports additive attributions and attributions with interactions. The Break Down Table shows contributions of every variable to a final prediction. The Break Down Plot presents variable contributions in a concise graphical way. This package works for classification and regression models. It is an extension of the 'breakDown' package (Staniak and Biecek 2018) <doi:10.32614/RJ-2018-072>, with new and faster strategies for orderings. It supports interactions in explanations and has interactive visuals (implemented with 'D3.js' library). The methodology behind is described in the 'iBreakDown' article (Gosiewska and Biecek 2019) <arXiv:1903.11420> This package is a part of the 'DrWhy.AI' universe (Biecek 2018) <arXiv:1806.08915>.
Author: Przemyslaw Biecek [aut, cre] , Alicja Gosiewska [aut] , Hubert Baniecki [aut] , Adam Izdebski [aut], Dariusz Komosinski [ctb]
Maintainer: Przemyslaw Biecek <przemyslaw.biecek@gmail.com>

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Package DPQ updated to version 0.5-8 with previous version 0.5-7 dated 2023-11-03

Title: Density, Probability, Quantile ('DPQ') Computations
Description: Computations for approximations and alternatives for the 'DPQ' (Density (pdf), Probability (cdf) and Quantile) functions for probability distributions in R. Primary focus is on (central and non-central) beta, gamma and related distributions such as the chi-squared, F, and t. -- For several distribution functions, provide functions implementing formulas from Johnson, Kotz, and Kemp (1992) <doi:10.1002/bimj.4710360207> and Johnson, Kotz, and Balakrishnan (1995) for discrete or continuous distributions respectively. This is for the use of researchers in these numerical approximation implementations, notably for my own use in order to improve standard R pbeta(), qgamma(), ..., etc: {'"dpq"'-functions}.
Author: Martin Maechler [aut, cre] , Morten Welinder [ctb] ), Wolfgang Viechtbauer [ctb] , 2002), Ross Ihaka [ctb] , Marius Hofert [ctb] , lssum), R-core [ctb] , R Foundation [cph]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>

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Package cthist updated to version 2.1.6 with previous version 2.1.4 dated 2023-11-04

Title: Clinical Trial Registry History
Description: Retrieves historical versions of clinical trial registry entries from <https://ClinicalTrials.gov>. Package functionality and implementation for v 1.0.0 is documented in Carlisle (2022) <DOI:10.1371/journal.pone.0270909>.
Author: Benjamin Gregory Carlisle [aut, cre]
Maintainer: Benjamin Gregory Carlisle <murph@bgcarlisle.com>

Diff between cthist versions 2.1.4 dated 2023-11-04 and 2.1.6 dated 2023-12-01

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Package cluster updated to version 2.1.6 with previous version 2.1.5 dated 2023-11-27

Title: "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Description: Methods for Cluster analysis. Much extended the original from Peter Rousseeuw, Anja Struyf and Mia Hubert, based on Kaufman and Rousseeuw (1990) "Finding Groups in Data".
Author: Martin Maechler [aut, cre] , Peter Rousseeuw [aut] , Anja Struyf [aut] , Mia Hubert [aut] , Kurt Hornik [trl, ctb] , <https://orcid.org/0000-0003-4198-9911>), Matthias Studer [ctb], Pierre Roudier [ctb], Juan Gonzalez [ctb], Kamil Kozlowski [ctb], Er [...truncated...]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>

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Package bookdown updated to version 0.37 with previous version 0.36 dated 2023-10-16

Title: Authoring Books and Technical Documents with R Markdown
Description: Output formats and utilities for authoring books and technical documents with R Markdown.
Author: Yihui Xie [aut, cre] , Christophe Dervieux [ctb] , JJ Allaire [ctb], Albert Kim [ctb], Alessandro Samuel-Rosa [ctb], Andrzej Oles [ctb], Atsushi Yasumoto [ctb] , Aust Frederik [ctb] , Bastiaan Quast [ctb], Ben Marwick [ctb], Chester Ismay [ctb], Clif [...truncated...]
Maintainer: Yihui Xie <xie@yihui.name>

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Package lamW updated to version 2.2.3 with previous version 2.2.2 dated 2023-11-19

Title: Lambert-W Function
Description: Implements both real-valued branches of the Lambert-W function (Corless et al, 1996) <doi:10.1007/BF02124750> without the need for installing the entire GSL.
Author: Avraham Adler [aut, cph, cre]
Maintainer: Avraham Adler <Avraham.Adler@gmail.com>

Diff between lamW versions 2.2.2 dated 2023-11-19 and 2.2.3 dated 2023-12-01

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Package grattanInflators updated to version 0.5.0 with previous version 0.4.2 dated 2023-08-23

Title: Inflators for Australian Policy Analysis
Description: Using Australian Bureau of Statistics indices, provides functions that convert historical, nominal statistics to real, contemporary values without worrying about date input quality, performance, or the ABS catalogue.
Author: Hugh Parsonage [aut, cre]
Maintainer: Hugh Parsonage <hugh.parsonage@gmail.com>

Diff between grattanInflators versions 0.4.2 dated 2023-08-23 and 0.5.0 dated 2023-12-01

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Package AlphaSimR updated to version 1.5.3 with previous version 1.5.2 dated 2023-10-31

Title: Breeding Program Simulations
Description: The successor to the 'AlphaSim' software for breeding program simulation [Faux et al. (2016) <doi:10.3835/plantgenome2016.02.0013>]. Used for stochastic simulations of breeding programs to the level of DNA sequence for every individual. Contained is a wide range of functions for modeling common tasks in a breeding program, such as selection and crossing. These functions allow for constructing simulations of highly complex plant and animal breeding programs via scripting in the R software environment. Such simulations can be used to evaluate overall breeding program performance and conduct research into breeding program design, such as implementation of genomic selection. Included is the 'Markovian Coalescent Simulator' ('MaCS') for fast simulation of biallelic sequences according to a population demographic history [Chen et al. (2009) <doi:10.1101/gr.083634.108>].
Author: Chris Gaynor [aut, cre] , Gregor Gorjanc [ctb] , John Hickey [ctb] , Daniel Money [ctb] , David Wilson [ctb], Thiago Oliveira [ctb] , Audrey Martin [ctb] , Philip Greenspoon [ctb]
Maintainer: Chris Gaynor <gaynor.robert@hotmail.com>

Diff between AlphaSimR versions 1.5.2 dated 2023-10-31 and 1.5.3 dated 2023-12-01

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New package survobj with initial version 1.0
Package: survobj
Title: Objects to Simulate Survival Times
Version: 1.0
Description: Generate objects that simulate survival times. Random values for the distributions are generated using the method described by Bender (2003) <https://epub.ub.uni-muenchen.de/id/eprint/1716>.
License: GPL (>= 3)
Encoding: UTF-8
Depends: R (>= 3.5.0)
Suggests: knitr, rmarkdown, spelling, testthat (>= 3.0.0)
Language: en-US
Imports: dplyr, tidyr, ggplot2, survival
VignetteBuilder: knitr
URL: https://johnaponte.github.io/survobj/, https://github.com/johnaponte/survobj
BugReports: https://github.com/johnaponte/survobj/issues
NeedsCompilation: no
Packaged: 2023-12-01 16:56:51 UTC; master
Author: Aponte John [aut, cre, cph]
Maintainer: Aponte John <john.j.aponte@gmail.com>
Repository: CRAN
Date/Publication: 2023-12-01 18:50:02 UTC

More information about survobj at CRAN
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New package rmerec with initial version 0.1.0
Package: rmerec
Title: MEREC - Method Based on the Removal Effects of Criteria
Version: 0.1.0
Maintainer: Lucas Sebastiao de Paula <lucas@ime.eb.br>
Description: Implementation of the MEthod based on the Removal Effects of Criteria - MEREC- a new objective weighting method for determining criteria weights for Multiple Criteria Decision Making problems, created by Mehdi Keshavarz-Ghorabaee (2021) <doi:10.3390/sym13040525>. Given a decision matrix, the function return the Merec´s weight vector and all intermediate matrix/vectors used to calculate it.
License: GPL (>= 3)
URL: https://github.com/lucassp/rmerec
Imports: utils
Language: en-US
Encoding: UTF-8
Suggests: testthat (>= 3.0.0)
NeedsCompilation: no
Packaged: 2023-12-01 17:24:34 UTC; lucas
Author: Lucas Sebastiao de Paula [aut, cre] , Bernardo Silva [ctb] , Marcos Santos [ctb]
Repository: CRAN
Date/Publication: 2023-12-01 19:00:02 UTC

More information about rmerec at CRAN
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Package etwfe updated to version 0.3.5 with previous version 0.3.4 dated 2023-06-19

Title: Extended Two-Way Fixed Effects
Description: Convenience functions for implementing extended two-way fixed effect regressions a la Wooldridge (2021, 2022) <doi:10.2139/ssrn.3906345>, <doi:10.2139/ssrn.4183726>.
Author: Grant McDermott [aut, cre] , Frederic Kluser [ctb]
Maintainer: Grant McDermott <gmcd@amazon.com>

Diff between etwfe versions 0.3.4 dated 2023-06-19 and 0.3.5 dated 2023-12-01

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Package tidylda updated to version 0.0.4 with previous version 0.0.3 dated 2023-07-14

Title: Latent Dirichlet Allocation Using 'tidyverse' Conventions
Description: Implements an algorithm for Latent Dirichlet Allocation (LDA), Blei et at. (2003) <https://www.jmlr.org/papers/volume3/blei03a/blei03a.pdf>, using style conventions from the 'tidyverse', Wickham et al. (2019)<doi:10.21105/joss.01686>, and 'tidymodels', Kuhn et al.<https://tidymodels.github.io/model-implementation-principles/>. Fitting is done via collapsed Gibbs sampling. Also implements several novel features for LDA such as guided models and transfer learning based on ongoing and, as yet, unpublished research.
Author: Tommy Jones [aut, cre] , Brendan Knapp [ctb] , Barum Park [ctb]
Maintainer: Tommy Jones <jones.thos.w@gmail.com>

Diff between tidylda versions 0.0.3 dated 2023-07-14 and 0.0.4 dated 2023-12-01

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Package shinyInvoice updated to version 0.0.2 with previous version 0.0.1 dated 2023-11-23

Title: Shiny App - Generate a Pdf Invoice with 'Rmarkdown'
Description: Generate an invoice containing a header with invoice number and businesses details. The invoice table contains any of: salary, one-liner costs, grouped costs. Under the table signature and bank account details appear. Pages are numbered when more than one. Source .json and .Rmd files are editable in the app. This package includes functions for getting exchange rates between currencies based on 'quantmod' (Ryan and Ulrich, 2023 <https://CRAN.R-project.org/package=quantmod>).
Author: Fernando Roa [aut, cre]
Maintainer: Fernando Roa <froao@unal.edu.co>

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Package mdsOpt updated to version 0.7-6 with previous version 0.7-1 dated 2022-06-26

Title: Searching for Optimal MDS Procedure for Metric and Interval-Valued Data
Description: Selecting the optimal multidimensional scaling (MDS) procedure for metric data via metric MDS (ratio, interval, mspline) and nonmetric MDS (ordinal). Selecting the optimal multidimensional scaling (MDS) procedure for interval-valued data via metric MDS (ratio, interval, mspline).Selecting the optimal multidimensional scaling procedure for interval-valued data by varying all combinations of normalization and optimization methods.Selecting the optimal MDS procedure for statistical data referring to the evaluation of tourist attractiveness of Lower Silesian counties. (Borg, I., Groenen, P.J.F., Mair, P. (2013) <doi:10.1007/978-3-642-31848-1>, Walesiak, M. (2016) <doi:10.15611/ekt.2016.2.01>, Walesiak, M. (2017) <doi:10.15611/ekt.2017.3.01>).
Author: Marek Walesiak [aut] , Andrzej Dudek [aut, cre]
Maintainer: Andrzej Dudek <andrzej.dudek@ue.wroc.pl>

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Package GPUmatrix updated to version 1.0.1 with previous version 1.0.0 dated 2023-11-27

Title: Basic Linear Algebra with GPU
Description: GPUs are great resources for data analysis, especially in statistics and linear algebra. Unfortunately, very few packages connect R to the GPU, and none of them are transparent enough to run the computations on the GPU without substantial changes to the code. The maintenance of these packages is cumbersome: several of the earlier attempts have been removed from their respective repositories. It would be desirable to have a properly maintained R package that takes advantage of the GPU with minimal changes to the existing code. We have developed the GPUmatrix package (available on CRAN). GPUmatrix mimics the behavior of the Matrix package and extends R to use the GPU for computations. It includes single(FP32) and double(FP64) precision data types, and provides support for sparse matrices. It is easy to learn, and requires very few code changes to perform the operations on the GPU. GPUmatrix relies on either the Torch or Tensorflow R packages to perform the GPU operations. We have demonst [...truncated...]
Author: Cesar Lobato-Fernandez [aut, cre], Juan A.Ferrer-Bonsoms [aut], Angel Rubio [aut, ctb]
Maintainer: Cesar Lobato-Fernandez <clobatofern@unav.es>

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Package pharmaversesdtm updated to version 0.2.0 with previous version 0.1.1 dated 2023-09-05

Title: Test Data for the Pharmaverse Family of Packages
Description: A set of Study Data Tabulation Model (SDTM) datasets from the Clinical Data Interchange Standards Consortium (CDISC) pilot project used for testing and developing Analysis Data Model (ADaM) datasets inside the pharmaverse family of packages. SDTM dataset specifications are described in: CDISC Submission Data Standards Team (2021) <https://www.cdisc.org/system/files/members/standard/foundational/SDTMIG%20v3.4-FINAL_2022-07-21.pdf>.
Author: Edoardo Mancini [aut, cre], Gayatri G [aut], Kangjie Zhang [aut], Pooja Kumari [aut], Stefan Bundfuss [aut], Zelos Zhu [aut]
Maintainer: Edoardo Mancini <edoardo.mancini@roche.com>

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New package MCTrend with initial version 1.0.1
Package: MCTrend
Title: Monte Carlo Trend Analysis
Version: 1.0.1
Date: 2023-11-28
Description: Application of a test to rule out that trends detected in hydrological time series are explained exclusively by the randomness of the climate. Based on: Ricchetti, (2018) <https://repositorio.uchile.cl/handle/2250/168487>.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: trend, reshape2, ggplot2, magrittr, lmomco, dplyr
Suggests: rmarkdown, knitr,
VignetteBuilder: knitr
Depends: R (>= 2.10)
NeedsCompilation: no
Packaged: 2023-11-30 23:01:27 UTC; CLAA300697
Author: Alonso Arriagada [aut, cre]
Maintainer: Alonso Arriagada <alonso.arriagada@usach.cl>
Repository: CRAN
Date/Publication: 2023-12-01 14:40:03 UTC

More information about MCTrend at CRAN
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New package enmpa with initial version 0.1.5
Package: enmpa
Title: Ecological Niche Modeling using Presence-Absence Data
Version: 0.1.5
Maintainer: Luis F. Arias-Giraldo <lfarias.giraldo@gmail.com>
Date: 2023-11-30
Description: A set of tools to perform Ecological Niche Modeling with presence-absence data. It includes algorithms for data partitioning, model fitting, calibration, evaluation, selection, and prediction. Other functions help to explore signals of ecological niche using univariate and multivariate analyses, and model features such as variable response curves and variable importance. Unique characteristics of this package are the ability to exclude models with concave quadratic responses, and the option to clamp model predictions to specific variables. These tools are implemented following principles proposed in Cobos et al., (2022) <doi:10.17161/bi.v17i.15985>, Cobos et al., (2019) <doi:10.7717/peerj.6281>, and Peterson et al., (2008) <doi:10.1016/j.ecolmodel.2007.11.008>.
License: GPL (>= 3)
Encoding: UTF-8
URL: https://github.com/Luisagi/enmpa
BugReports: https://github.com/Luisagi/enmpa/issues
Imports: doSNOW, ellipse, foreach, graphics, methods, mgcv, parallel, Rcpp, snow, stats, terra, utils, vegan
LazyData: true
Depends: R (>= 3.5.0)
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2023-12-01 08:27:52 UTC; luisagi
Author: Luis F. Arias-Giraldo [aut, cre] , Marlon E. Cobos [aut] , A. Townsend Peterson [aut]
Repository: CRAN
Date/Publication: 2023-12-01 15:00:02 UTC

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New package acro with initial version 0.1.1
Package: acro
Title: A Tool for Automating the Statistical Disclosure Control of Research Outputs
Version: 0.1.1
Maintainer: Jim Smith <James.Smith@uwe.ac.uk>
Description: Assists researchers and output checkers by distinguishing between research output that is safe to publish, output that requires further analysis, and output that cannot be published because of substantial disclosure risk. A paper about the tool was presented at The United Nations Economic Commission for Europe Expert Meeting on Statistical Data Confidentiality <https://unece.org/statistics/events/SDC2023><https://uwe-repository.worktribe.com/output/11060964>.
License: MIT + file LICENSE
Encoding: UTF-8
SystemRequirements: Python (>= 3.8)
Imports: reticulate, admiraldev, png
Depends: R (>= 2.10)
LazyData: true
Suggests: spelling, testthat (>= 3.0.0)
Language: en-US
NeedsCompilation: no
Packaged: 2023-11-30 15:55:05 UTC; m-albashir
Author: Jim Smith [cre, ctb] , Maha Albashir [aut, ctb], Richard John Preen [ctb]
Repository: CRAN
Date/Publication: 2023-12-01 15:00:06 UTC

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Package wwntests updated to version 1.1.0 with previous version 1.0.2 dated 2022-11-01

Title: Hypothesis Tests for Functional Time Series
Description: Provides a collection of white noise hypothesis tests for functional time series and related visualizations. These include tests based on the norms of autocovariance operators that are built under both strong and weak white noise assumptions. Additionally, tests based on the spectral density operator and on principal component dimensional reduction are included, which are built under strong white noise assumptions. Also, this package provides goodness-of-fit tests for functional autoregressive of order 1 models. These methods are described in Kokoszka et al. (2017) <doi:10.1016/j.jmva.2017.08.004>, Characiejus and Rice (2019) <doi:10.1016/j.ecosta.2019.01.003>, Gabrys and Kokoszka (2007) <doi:10.1198/016214507000001111>, and Kim et al. (2023) <doi: 10.1214/23-SS143> respectively.
Author: Mihyun Kim [aut, cre], Daniel Petoukhov [aut]
Maintainer: Mihyun Kim <mihyun.kim@mail.wvu.edu>

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Package TITEgBOIN updated to version 0.3.0 with previous version 0.2.1 dated 2023-07-17

Title: Time-to-Event Dose-Finding Design for Multiple Toxicity Grades
Description: In some phase I trials, the design goal is to find the dose associated with a certain target toxicity rate or the dose with a certain weighted sum of rates of various toxicity grades. 'TITEgBOIN' provides the set up and calculations needed to run a dose-finding trial using bayesian optimal interval (BOIN) (Yuan et al. (2016) <doi:10.1158/1078-0432.CCR-16-0592>), generalized bayesian optimal interval (gBOIN) (Mu et al. (2019) <doi:10.1111/rssc.12263>), time-to-event bayesian optimal interval (TITEBOIN) (Lin et al. (2020) <doi:10.1093/biostatistics/kxz007>) and time-to-event generalized bayesian optimal interval (TITEgBOIN) (Takeda et al. (2022) <doi:10.1002/pst.2182>) designs. 'TITEgBOIN' can conduct tasks: run simulations and get operating characteristics; determine the dose for the next cohort; select maximum tolerated dose (MTD). These functions allow customization of design characteristics to vary sample size, cohort sizes, target dose limiting toxicity (DLT) [...truncated...]
Author: Jing Zhu [cre, aut], Jun Zhang [aut], Kentaro Takeda [aut]
Maintainer: Jing Zhu <zhujing716@gmail.com>

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Package GE updated to version 0.4.1 with previous version 0.4.0 dated 2023-11-08

Title: General Equilibrium Modeling
Description: Some tools for developing general equilibrium models and some general equilibrium models. These models can be used for teaching economic theory and are built by the methods of new structural economics (see <https://www.nse.pku.edu.cn/> and LI Wu, 2019, ISBN: 9787521804225, General Equilibrium and Structural Dynamics: Perspectives of New Structural Economics. Beijing: Economic Science Press). The model form and mathematical methods can be traced back to J. von Neumann (1945, A Model of General Economic Equilibrium. The Review of Economic Studies, 13. pp. 1-9), J. G. Kemeny, O. Morgenstern and G. L. Thompson (1956, A Generalization of the von Neumann Model of an Expanding Economy, Econometrica, 24, pp. 115-135) et al. By the way, J. G. Kemeny is a co-inventor of the computer language BASIC.
Author: LI Wu <liwu@staff.shu.edu.cn>
Maintainer: LI Wu <liwu.shu@qq.com>

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Package RTMB updated to version 1.4 with previous version 1.3 dated 2023-10-13

Title: 'R' Bindings for 'TMB'
Description: Native 'R' interface to 'TMB' (Template Model Builder) so models can be written entirely in 'R' rather than 'C++'. Automatic differentiation, to any order, is available for a rich subset of 'R' features, including linear algebra for dense and sparse matrices, complex arithmetic, Fast Fourier Transform, probability distributions and special functions. 'RTMB' provides easy access to model fitting and validation following the principles of Kristensen, K., Nielsen, A., Berg, C. W., Skaug, H., & Bell, B. M. (2016) <DOI:10.18637/jss.v070.i05> and Thygesen, U.H., Albertsen, C.M., Berg, C.W. et al. (2017) <DOI:10.1007/s10651-017-0372-4>.
Author: Kasper Kristensen [aut, cre]
Maintainer: Kasper Kristensen <kaskr@dtu.dk>

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Package rplum updated to version 0.4.0 with previous version 0.3.0 dated 2022-12-23

Title: Bayesian Age-Depth Modelling of Cores Dated by Pb-210
Description: An approach to age-depth modelling that uses Bayesian statistics to reconstruct accumulation histories for 210Pb-dated deposits using prior information. It can combine 210Pb, radiocarbon, and other dates in the chronologies. See Aquino et al. (2018) <doi:10.1007/s13253-018-0328-7>. Note that parts of the code underlying 'rplum' are derived from the 'rbacon' package by the same authors, and there remains a degree of overlap between the two packages.
Author: Maarten Blaauw [aut, cre] , J. Andres Christen [aut, ctb, cph] , Marco A. Aquino Lopez [aut] , Judith Esquivel Vazquez [ctb], Oscar M. Gonzalez V. [ctb], Ted Belding [cph], James Theiler [cph], Brian Gough [cph], Charles Karney [cph]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>

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Package ntsDists updated to version 2.0.0 with previous version 1.0.0 dated 2023-08-25

Title: Neutrosophic Distributions
Description: Computes the pdf, cdf, quantile function and generating random numbers for neutrosophic distributions. This family have been developed by different authors in the recent years. See Patro and Smarandache (2016) <doi:10.5281/zenodo.571153> and Rao et al (2023) <doi:10.5281/zenodo.7832786>.
Author: Danial Mazarei [aut, cre] , Foad Esmaeili [aut] , Amin Roshani [aut] , Mina Norouzirad [aut] , Gadde Srinivasa Rao [ctb] , FCT, I.P. [fnd] )
Maintainer: Danial Mazarei <danial.mazarei@gmail.com>

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Package pmparser updated to version 1.0.18 with previous version 1.0.17 dated 2023-05-23

Title: Create and Maintain a Relational Database of Data from PubMed/MEDLINE
Description: Provides a simple interface for extracting various elements from the publicly available PubMed XML files, incorporating PubMed's regular updates, and combining the data with the NIH Open Citation Collection. See Schoenbachler and Hughey (2021) <doi:10.7717/peerj.11071>.
Author: Jake Hughey [aut, cre], Josh Schoenbachler [aut], Elliot Outland [aut]
Maintainer: Jake Hughey <jakejhughey@gmail.com>

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Package isotree updated to version 0.5.24-2 with previous version 0.5.24-1 dated 2023-11-28

Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>), extended isolation forest (Hariri, Kind, Brunner (2018) <arXiv:1811.02141>), SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>), fair-cut forest (Cortes (2021) <arXiv:2110:13402>), robust random-cut forest (Guha, Mishra, Roy, Schrijvers (2016) <http://proceedings.mlr.press/v48/guha16.html>), and customizable variations of them, for isolation-based outlier detection, clustered outlier detection, distance or similarity approximation (Cortes (2019) <arXiv:1910.12362>), isolation kernel calculation (Ting, Zhu, Zhou (2018) <doi:10.1145/3219819.3219990>), and imputation of missing values (Cortes (2019) <arXiv:1911.06646>), based on random or guided decision tree splitting, and providing different metrics for scoring anomalies based on isolation depth or density (Cortes (2021) <arXiv:2111.11639>). Provides simp [...truncated...]
Author: David Cortes [aut, cre, cph], Thibaut Goetghebuer-Planchon [cph] , David Blackman [cph] , Sebastiano Vigna [cph] , NumPy Developers [cph] , SciPy Developers [cph] , Enthought Inc [cph] , Stephen Moshier [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>

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Package GlmSimulatoR updated to version 1.0.0 with previous version 0.2.5 dated 2021-11-04

Title: Creates Ideal Data for Generalized Linear Models
Description: Creates ideal data for all distributions in the generalized linear model framework.
Author: Greg McMahan
Maintainer: Greg McMahan <gmcmacran@gmail.com>

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Package dformula updated to version 1.0 with previous version 0.1 dated 2020-06-04

Title: Data Manipulation using Formula
Description: A tool for manipulating data using the generic formula. A single formula allows to easily add, replace and remove variables before running the analysis.
Author: Alessio Serafini [aut, cre]
Maintainer: Alessio Serafini <srf.alessio@gmail.com>

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Package DescTools updated to version 0.99.52 with previous version 0.99.51 dated 2023-11-20

Title: Tools for Descriptive Statistics
Description: A collection of miscellaneous basic statistic functions and convenience wrappers for efficiently describing data. The author's intention was to create a toolbox, which facilitates the (notoriously time consuming) first descriptive tasks in data analysis, consisting of calculating descriptive statistics, drawing graphical summaries and reporting the results. The package contains furthermore functions to produce documents using MS Word (or PowerPoint) and functions to import data from Excel. Many of the included functions can be found scattered in other packages and other sources written partly by Titans of R. The reason for collecting them here, was primarily to have them consolidated in ONE instead of dozens of packages (which themselves might depend on other packages which are not needed at all), and to provide a common and consistent interface as far as function and arguments naming, NA handling, recycling rules etc. are concerned. Google style guides were used as naming rules (in ab [...truncated...]
Author: Andri Signorell [aut, cre], Ken Aho [ctb], Andreas Alfons [ctb], Nanina Anderegg [ctb], Tomas Aragon [ctb], Chandima Arachchige [ctb], Antti Arppe [ctb], Adrian Baddeley [ctb], Kamil Barton [ctb], Ben Bolker [ctb], Hans W. Borchers [ctb], Frederico C [...truncated...]
Maintainer: Andri Signorell <andri@signorell.net>

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Package dbx updated to version 0.3.0 with previous version 0.2.8 dated 2021-01-17

Title: A Fast, Easy-to-Use Database Interface
Description: Provides select, insert, update, upsert, and delete database operations. Supports 'PostgreSQL', 'MySQL', 'SQLite', and more, and plays nicely with the 'DBI' package.
Author: Andrew Kane [aut, cre]
Maintainer: Andrew Kane <andrew@chartkick.com>

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Package datetoiso updated to version 0.2.0 with previous version 0.1.0 dated 2023-02-28

Title: Modify Dates to ISO Standard ("International Organization for Standardization")
Description: Transfer any date type to ISO standard. Package recognizes dates in given data frame and transform to ISO format. Only one date format can be applied within one data frame column.
Author: Lukasz Andrzejewski [aut, cre]
Maintainer: Lukasz Andrzejewski <lukasz.coding@gmail.com>

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Package dartRverse updated to version 0.51 with previous version 0.49 dated 2023-08-22

Title: Install and Load the 'dartRverse' Suits of Packages
Description: Provides a single function that supports the installation of all packages belonging to the 'dartRverse'. The 'dartRverse' is a set of packages that work together to analyse SNP (single nuclear polymorphism) data. All packages aim to have a similar 'look and feel' and are based on the same type of data structure ('genlight'), with additional metadata for loci and individuals (samples). For more information visit the 'GitHub' pages <https://github.com/green-striped-gecko/dartRverse>.
Author: Bernd Gruber [aut, cre], Arthur Georges [aut], Jose L. Mijangos [aut], Carlo Pacioni [aut], Peter J. Unmack [aut], Oliver Berry [aut]
Maintainer: Bernd Gruber <bernd.gruber@canberra.edu.au>

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Package BayesFactor updated to version 0.9.12-4.6 with previous version 0.9.12-4.5 dated 2023-09-21

Title: Computation of Bayes Factors for Common Designs
Description: A suite of functions for computing various Bayes factors for simple designs, including contingency tables, one- and two-sample designs, one-way designs, general ANOVA designs, and linear regression.
Author: Richard D. Morey [aut, cre, cph], Jeffrey N. Rouder [aut], Tahira Jamil [ctb, cph], Simon Urbanek [ctb, cph], Karl Forner [ctb, cph], Alexander Ly [ctb, cph]
Maintainer: Richard D. Morey <richarddmorey@gmail.com>

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Package practicalSigni updated to version 0.1.2 with previous version 0.1.1 dated 2023-03-29

Title: Practical Significance Ranking of Regressors and Exact t Density
Description: Consider a possibly nonlinear nonparametric regression with p regressors. We provide evaluations by 13 methods to rank regressors by their practical significance or importance using various methods, including machine learning tools. Comprehensive methods are as follows. m6=Generalized partial correlation coefficient or GPCC by Vinod (2021)<doi:10.1007/s10614-021-10190-x> and Vinod (2022)<https://www.mdpi.com/1911-8074/15/1/32>. m7= a generalization of psychologists' effect size incorporating nonlinearity and many variables. m8= local linear partial (dy/dxi) using the 'np' package for kernel regressions. m9= partial (dy/dxi) using the 'NNS' package. m10= importance measure using the 'NNS' boost function. m11= Shapley Value measure of importance (cooperative game theory). m12 and m13= two versions of the random forest algorithm. Taraldsen's exact density for sampling distribution of correlations added.
Author: Hrishikesh Vinod [aut, cre]
Maintainer: Hrishikesh Vinod <vinod@fordham.edu>

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Package leidenbase updated to version 0.1.27 with previous version 0.1.25 dated 2023-07-19

Title: R and C/C++ Wrappers to Run the Leiden find_partition() Function
Description: An R to C/C++ interface that runs the Leiden community detection algorithm to find a basic partition (). It runs the equivalent of the 'leidenalg' find_partition() function, which is given in the 'leidenalg' distribution file 'leiden/src/functions.py'. This package includes the required source code files from the official 'leidenalg' distribution and functions from the R 'igraph' package. The 'leidenalg' distribution is available from <https://github.com/vtraag/leidenalg/> and the R 'igraph' package is available from <https://igraph.org/r/>. The Leiden algorithm is described in the article by Traag et al. (2019) <doi:10.1038/s41598-019-41695-z>. Leidenbase includes code from the packages: igraph version 0.9.8 with license GPL (>= 2), leidenalg version 0.8.10 with license GPL 3.
Author: Brent Ewing [aut, cre], Vincent Traag [ctb], Gabor Csardi [ctb], Tamas Nepusz [ctb], Szabolcs Horvat [ctb], Fabio Zanini [ctb]
Maintainer: Brent Ewing <bge@uw.edu>

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Package finnts updated to version 0.4.0 with previous version 0.3.0 dated 2023-08-09

Title: Microsoft Finance Time Series Forecasting Framework
Description: Automated time series forecasting developed by Microsoft Finance. The Microsoft Finance Time Series Forecasting Framework, aka Finn, can be used to forecast any component of the income statement, balance sheet, or any other area of interest by finance. Any numerical quantity over time, Finn can be used to forecast it. While it can be applied outside of the finance domain, Finn was built to meet the needs of financial analysts to better forecast their businesses within a company, and has a lot of built in features that are specific to the needs of financial forecasters. Happy forecasting!
Author: Mike Tokic [aut, cre] , Aadharsh Kannan [aut]
Maintainer: Mike Tokic <mftokic@gmail.com>

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