Sat, 16 Mar 2013

New look and feel for CRANberries
The CRANberries site just got a facelift. A few technical details, as well as backstory, useful links, and more are in a new about page. In a nutshell, it still uses the same static blog generator but an current css/js framework and theme. Enjoy!
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Package ncvreg updated to version 2.5-0 with previous version 2.4-0 dated 2012-10-10

Title: Regularization paths for SCAD- and MCP-penalized regression models
Description: Efficient algorithms for fitting regularization paths for linear or logistic regression models penalized by MCP or SCAD, with optional additional L2 penalty ("Mnet").
Author: Patrick Breheny
Maintainer: Patrick Breheny

Diff between ncvreg versions 2.4-0 dated 2012-10-10 and 2.5-0 dated 2013-03-16

 DESCRIPTION              |    9 +++---
 MD5                      |   28 +++++++++++----------
 NAMESPACE                |    2 +
 NEWS                     |    9 ++++++
 R/cv.ncvreg.R            |    9 +++++-
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 inst/tests/test.R        |   51 ++++++++++++++++++++++++++++++++++++---
 man/cv.ncvreg.Rd         |   17 +++++++------
 man/ncvreg-package.Rd    |   15 +++++++----
 man/ncvreg.Rd            |    4 +--
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 16 files changed, 211 insertions(+), 57 deletions(-)

More information about ncvreg at CRAN
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Package HapEstXXR updated to version 0.1-5 with previous version 0.1-4 dated 2011-11-30

Title: HapEstXXR
Description: Multi-locus marker analysis
Author: Sven Knueppel and Klaus Rohde
Maintainer: Sven Knueppel

Diff between HapEstXXR versions 0.1-4 dated 2011-11-30 and 0.1-5 dated 2013-03-16

 DESCRIPTION                         |   11 ++++++-----
 MD5                                 |   22 +++++++++++-----------
 R/maf.R                             |    7 ++-----
 R/msr.binomial.forward.adjusted.R   |    2 +-
 R/msr.binomial.forward.unadjusted.R |    2 +-
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 src/HapRshort.c                     |    4 ++--
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 src/itegeppXXR.c                    |    2 +-
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More information about HapEstXXR at CRAN
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Package googleVis updated to version 0.4.2 with previous version 0.3.3 dated 2012-11-02

Title: Interface between R and the Google Chart Tools
Description: The googleVis package provides an interface between R and the Google Chart Tools, formerly know as Google Visualisation API. It allows users to create web pages with interactive charts based on R data frames, using the Google Chart Tools and to display them either via the local R HTTP help server or within their own sites, without uploading the data to Google. A modern browser with Internet connection is required and for some charts Flash. Please visit the project web site for more information and examples.
Author: Markus Gesmann, Diego de Castillo
Maintainer: Markus Gesmann

Diff between googleVis versions 0.3.3 dated 2012-11-02 and 0.4.2 dated 2013-03-16

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 62 files changed, 732 insertions(+), 382 deletions(-)

More information about googleVis at CRAN
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Package Ecdat updated to version 0.2-2 with previous version 0.2-1 dated 2013-02-15

Title: Data sets for econometrics
Description: Data sets for econometrics
Author: Yves Croissant
Maintainer: Spencer Graves

Diff between Ecdat versions 0.2-1 dated 2013-02-15 and 0.2-2 dated 2013-03-16

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 138 files changed, 183 insertions(+), 145 deletions(-)

More information about Ecdat at CRAN
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Package MSToolkit (with last version 3.2.0.1) was removed from CRAN

Previous versions (as known to CRANberries) which should be available via the Archive link are:

2013-02-22 3.2.0.1
2012-09-27 3.2.0

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Package StatDA updated to version 1.6.4 with previous version 1.6.3 dated 2012-09-03

Title: Statistical Analysis for Environmental Data
Description: This package offers different possibilities to make statistical analysis for Environmental Data.
Author: Peter Filzmoser
Maintainer: Peter Filzmoser

Diff between StatDA versions 1.6.3 dated 2012-09-03 and 1.6.4 dated 2013-03-16

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More information about StatDA at CRAN
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Package RSurvey updated to version 0.7-3 with previous version 0.7-2 dated 2013-01-04

Title: Analysis of Spatially Distributed Data
Description: This package is a processing program for spatially distributed data. It features graphing tools, query building, and polygon clipping. A graphical user interface is provided.
Author: Jason C. Fisher
Maintainer: Fisher, Jason

Diff between RSurvey versions 0.7-2 dated 2013-01-04 and 0.7-3 dated 2013-03-16

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More information about RSurvey at CRAN
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Package rasterVis updated to version 0.20-05 with previous version 0.20-01 dated 2013-01-09

Title: Visualization methods for the raster package
Description: The raster package defines classes and methods for spatial raster data access and manipulation. The rasterVis package complements raster providing a set of methods for enhanced visualization and interaction.
Author: Oscar Perpinan Lamigueiro [cre, aut], Robert Hijmans [aut]
Maintainer: Oscar Perpinan Lamigueiro

Diff between rasterVis versions 0.20-01 dated 2013-01-09 and 0.20-05 dated 2013-03-16

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New package popgraph with initial version 1.0
Package: popgraph
Type: Package
Title: This is an R package that constructs and manipulates population graphs.
Version: 1.0
Date: 2013-03-06
Author: Rodney J. Dyer
Maintainer: Rodney J. Dyer
Description: This is a generic package that produces "Population Graphs" a graph-theoretic topology based upon conditional genetic covariance. This functionality used to be within the gstudio package, but has been taken out to focus on spatial integration of graph topologies with existing packages like sp, raster, and ggplot2.
License: GPL (>= 2)
LazyLoad: yes
Depends: R (>= 2.15), igraph, sp, testthat
Imports: MASS
Suggests: maps, GGally, fields
Collate: 'congruence_topology.R' 'decorate_popgraph.R' 'population_graph.R' 'test_congruence.R' 'centroid_distance.R' 'to_html.R' 'to_kml.R' 'popgraph-package.R' 'to_json.R' 'to_matrix.R' 'to_SpatialLines.R' 'to_SpatialPoints.R' 'as_population_graph.R' 'centroid_variance.R' 'read_population_graph.R' 'to_pgraph.R' 'write_population_graph.R' 'overlay_population_graph.R'
Packaged: 2013-03-15 22:43:41 UTC; dyer
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-03-16 07:20:52

More information about popgraph at CRAN
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Package MTurkR updated to version 0.3.5 with previous version 0.3 dated 2013-01-26

Title: Access to Amazon Mechanical Turk Requester API via R
Description: Provides access to the Amazon Mechanical Turk (MTurk) Requester API via authenticated HTTP requests executed with the RCurl package and a number of functions to translate API calls into R data structures (using the XML package).
Author: Thomas J. Leeper
Maintainer: Thomas J. Leeper

Diff between MTurkR versions 0.3 dated 2013-01-26 and 0.3.5 dated 2013-03-16

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More information about MTurkR at CRAN
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Package lattice updated to version 0.20-14 with previous version 0.20-13 dated 2013-01-08

Title: Lattice Graphics
Description: Lattice is a powerful and elegant high-level data visualization system, with an emphasis on multivariate data, that is sufficient for typical graphics needs, and is also flexible enough to handle most nonstandard requirements. See ?Lattice for an introduction.
Author: Deepayan Sarkar
Maintainer: Deepayan Sarkar

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More information about lattice at CRAN
Permanent link

New package iteRates with initial version 3.0
Package: iteRates
Type: Package
Title: Parametric rate comparison
Version: 3.0
Date: 2012-12-03
Author: Premal Shah, Benjamin Fitzpatrick, James Fordyce
Maintainer: Ben Fitzpatrick
Description: Iterates through a phylogenetic tree to identify regions of rate variation using the parametric rate comparison test.
License: GPL (>= 3)
LazyLoad: yes
Depends: partitions, stats, VGAM, MASS, ape, apTreeshape, geiger, laser
Packaged: 2013-03-15 16:54:48 UTC; jamesfordyce
NeedsCompilation: no
Repository: CRAN
Date/Publication: 2013-03-16 07:19:04

More information about iteRates at CRAN
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Package growcurves updated to version 0.2.3.4 with previous version 0.2.3.3 dated 2013-02-08

Title: Bayesian semi and nonparametric growth curve models that additionally include multiple membership random effects.
Description: Employs a non-parametric formulation for by-subject random effect parameters to borrow strength over a constrained number of repeated measurement waves in a fashion that permits multiple effects per subject. One class of models employs a Dirichlet process (DP) prior for the subject random effects and includes an additional set of random effects that utilize a different grouping factor and are mapped back to clients through a multiple membership weight matrix; e.g. treatment(s) exposure or dosage. A second class of models employs a dependent DP (DDP) prior for the subject random effects that directly incorporates the multiple membership pattern.
Author: Terrance Savitsky
Maintainer: "terrance savitsky"

Diff between growcurves versions 0.2.3.3 dated 2013-02-08 and 0.2.3.4 dated 2013-03-16

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Package FitAR updated to version 1.94 with previous version 1.92 dated 2011-05-18

Title: Subset AR Model Fitting
Description: Comprehensive model building function for identification, estimation and diagnostic checking for AR and subset AR models. Two types of subset AR models are supported. One family of subset AR models, denoted by ARp, is formed by taking subet of the original AR coefficients and in the other, denoted by ARz, subsets of the partial autocorrelations are used. The main advantage of the ARz model is its applicability to very large order models.
Author: A.I. McLeod, Ying Zhang and Changjiang Xu
Maintainer: A.I. McLeod

Diff between FitAR versions 1.92 dated 2011-05-18 and 1.94 dated 2013-03-16

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