Title: Unit Testing for R
Description: Software testing is important, but, in part because it is
frustrating and boring, many of us avoid it. 'testthat' is a testing
framework for R that is easy to learn and use, and integrates with
your existing 'workflow'.
Author: Hadley Wickham [aut, cre],
RStudio [cph, fnd],
R Core team [ctb] (Implementation of utils::recover())
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between testthat versions 3.1.0 dated 2021-10-04 and 3.1.1 dated 2021-12-03
DESCRIPTION | 8 - MD5 | 47 ++++--- NEWS.md | 40 ++++++ R/edition.R | 26 ++++ R/expect-condition.R | 123 ++++++++++++++++---- R/local.R | 11 + R/quasi-label.R | 7 + R/snapshot.R | 68 +++++++++-- README.md | 2 build/vignette.rds |binary inst/doc/custom-expectation.html | 198 ++++++++++++++++++++++++++++++++- inst/doc/parallel.html | 196 ++++++++++++++++++++++++++++++++ inst/doc/skipping.html | 198 ++++++++++++++++++++++++++++++++- inst/doc/snapshotting.html | 196 ++++++++++++++++++++++++++++++++ inst/doc/test-fixtures.html | 198 ++++++++++++++++++++++++++++++++- inst/doc/third-edition.html | 196 ++++++++++++++++++++++++++++++++ man/expect_error.Rd | 7 + man/expect_snapshot.Rd | 7 + tests/testthat/_snaps/R4.1 |only tests/testthat/_snaps/rlang-1.0 |only tests/testthat/_snaps/rlang-pre-1.0 |only tests/testthat/_snaps/snapshot.md | 6 + tests/testthat/helper-testthat.R |only tests/testthat/test-expect-condition.R | 28 ++++ tests/testthat/test-expect-equality.R | 20 +++ tests/testthat/test-snapshot.R | 56 +++++++++ 26 files changed, 1558 insertions(+), 80 deletions(-)
Title: Open Source OCR Engine
Description: Bindings to 'Tesseract' <https://opensource.google/projects/tesseract>:
a powerful optical character recognition (OCR) engine that supports over 100 languages.
The engine is highly configurable in order to tune the detection algorithms and
obtain the best possible results.
Author: Jeroen Ooms [aut, cre] (<https://orcid.org/0000-0002-4035-0289>)
Maintainer: Jeroen Ooms <jeroen@berkeley.edu>
Diff between tesseract versions 4.1.2 dated 2021-09-18 and 4.2.0 dated 2021-12-03
DESCRIPTION | 8 MD5 | 20 NEWS | 4 R/tesseract.R | 2 build/vignette.rds |binary inst/doc/intro.Rmd | 1 inst/doc/intro.html | 1327 ++++++++++++++++++++++++++++++++++++++++++++++++++-- man/tesseract.Rd | 2 src/RcppExports.cpp | 5 src/tesseract.cpp | 17 vignettes/intro.Rmd | 1 11 files changed, 1332 insertions(+), 55 deletions(-)
Title: Semiparametric Model-Assisted Estimation in Finite Population
Description: It is a framework to fit semiparametric regression estimators for the total parameter of a finite population
when the interest variable is asymmetric distributed. The main references for this package are: Sarndal C.E., Swensson B., and Wretman J. (2003,ISBN: 978-0-387-40620-6, "Model Assisted Survey Sampling." Springer-Verlag)
and Cardozo C.A and Alonso-Malaver C.E. (2021). "Semi-parametric model assisted estimation in finite populations." In preparation.
Author: Carlos Alberto Cardozo Delgado [aut, cre, cph],
Carlos E. Alonso-Malaver [aut]
Maintainer: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>
Diff between sregsurvey versions 0.1.0 dated 2021-09-15 and 0.1.1 dated 2021-12-03
DESCRIPTION | 17 +++++++++-------- MD5 | 22 ++++++++++++---------- NAMESPACE | 3 +++ R/sreg_ber.R | 16 +++++++++++----- R/sreg_pips.R | 20 +++++++++++++------- R/sreg_poisson.R | 16 +++++++++++----- R/sreg_srswr.R | 20 +++++++++++++------- R/sreg_stsi.R |only man/sreg_ber.Rd | 14 +++++++++++--- man/sreg_pips.Rd | 19 ++++++++++++++----- man/sreg_poisson.Rd | 13 ++++++++++--- man/sreg_srswr.Rd | 24 ++++++++++++++++++++---- man/sreg_stsi.Rd |only 13 files changed, 127 insertions(+), 57 deletions(-)
Title: Soil Database Interface
Description: A collection of functions for reading data from USDA-NCSS soil databases.
Author: Dylan Beaudette [aut],
Jay Skovlin [aut],
Stephen Roecker [aut],
Andrew Brown [aut, cre]
Maintainer: Andrew Brown <andrew.g.brown@usda.gov>
Diff between soilDB versions 2.6.5 dated 2021-08-21 and 2.6.9 dated 2021-12-03
DESCRIPTION | 16 +- MD5 | 137 +++++++++--------- NAMESPACE | 21 -- NEWS.md | 24 +++ R/SDA-spatial.R | 185 +++++-------------------- R/SDA_hydric.R | 108 +++++++++++--- R/SDA_muaggatt.R | 9 - R/SDA_pmgroupname.R | 112 ++++++++------- R/SDA_properties.R | 52 +++---- R/SDA_query.R | 28 +-- R/fetchEDIT_tools.R | 5 R/fetchHenry.R | 177 +++++++++++++++-------- R/fetchKSSL.R | 40 +++-- R/fetchNASIS.R | 1 R/fetchNASISWebReport.R | 80 ---------- R/fetchNASIS_components.R | 46 +++--- R/fetchNASIS_pedons.R | 10 - R/fetchNASIS_report.R | 2 R/fetchOSD.R | 10 - R/fetchPedonPC.R | 4 R/fetchSCAN.R | 149 +++++++++++--------- R/fetchSDA_spatial.R | 15 +- R/getHzErrorsPedonPC.R | 2 R/get_OSD.R | 122 ++++++++++++---- R/get_colors_from_pedon_db.R | 48 +++--- R/get_component_data_from_NASIS_db.R | 125 ++++++++++++++-- R/get_component_from_SDA.R | 160 +++------------------ R/get_hz_data_from_pedon_db.R | 2 R/mix_and_clean_colors.R | 2 R/simplfyFragmentData.R | 105 +++++++------- R/simplifyArtifactData.R | 49 +++--- R/taxaExtent.R | 33 ---- R/utils.R | 18 ++ R/waterDayYear.R | 18 +- build/partial.rdb |binary man/SDA_query.Rd | 20 -- man/SDA_spatialQuery.Rd | 6 man/fetchKSSL.Rd | 2 man/fetchNASISWebReport.Rd | 80 ---------- man/fetchOSD.Rd | 8 - man/fetchSCAN.Rd | 5 man/fetchSDA.Rd | 116 --------------- man/get_EDIT_ecoclass_by_geoUnit.Rd | 2 man/get_OSD.Rd | 2 man/get_SDA_hydric.Rd | 27 +++ man/get_SDA_muaggatt.Rd | 4 man/get_SDA_pmgroupname.Rd | 17 ++ man/get_SDA_property.Rd | 6 man/get_component_data_from_NASIS_db.Rd | 3 man/processSDA_WKT.Rd | 6 man/simplifyFragmentData.Rd | 42 ++++- man/taxaExtent.Rd | 29 --- tests/testthat/test-SDA_hydric.R | 11 + tests/testthat/test-SDA_interpretations.R | 4 tests/testthat/test-SDA_muaggatt.R | 4 tests/testthat/test-SDA_pmgroupname.R | 8 - tests/testthat/test-SDA_properties.R | 6 tests/testthat/test-SDA_query.R | 19 ++ tests/testthat/test-fetchEDIT_tools.R | 3 tests/testthat/test-fetchHenry.R |only tests/testthat/test-fetchKSSL.R | 9 + tests/testthat/test-fetchNASIS.R | 4 tests/testthat/test-fetchOSD.R | 37 ++--- tests/testthat/test-fetchSCAN.R | 10 + tests/testthat/test-fetchSDA_spatial.R | 4 tests/testthat/test-get_OSD.R | 47 +++++- tests/testthat/test-multi-row-simplification.R | 11 + tests/testthat/test-simplifyArtifactData.R | 8 - tests/testthat/test-simplifyFragmentData.R | 22 +- tests/testthat/test-waterDayYear.R | 32 ++++ 70 files changed, 1272 insertions(+), 1257 deletions(-)
Title: Regularized Linear Models
Description: Algorithms compute concave convex (CC) estimators including robust (penalized) generalized linear models and robust support vector machines via the COCO - composite optimization by conjugation operator. The package also contains penalized Poisson, negative binomial, zero-inflated Poisson, zero-inflated negative binomial regression models and robust models with non-convex loss functions. Wang et al. (2014) <doi:10.1002/sim.6314>,
Wang et al. (2015) <doi:10.1002/bimj.201400143>,
Wang et al. (2016) <doi:10.1177/0962280214530608>,
Wang (2021) <doi:10.1007/s11749-021-00770-2>,
Wang (2020) <arXiv:2010.02848>.
Author: Zhu Wang, with contributions from Achim Zeileis, Simon Jackman, Brian Ripley, and Patrick Breheny
Maintainer: Zhu Wang <wangz1@uthscsa.edu>
Diff between mpath versions 0.4-2.19 dated 2021-04-05 and 0.4-2.20 dated 2021-12-03
DESCRIPTION | 10 ++++----- MD5 | 41 +++++++++++++++++++-------------------- NEWS | 5 ++++ R/glmregNB.R | 2 - R/zipath.R | 3 +- build/partial.rdb |only build/vignette.rds |binary inst/doc/brcancer.pdf |binary inst/doc/kkt.pdf |binary inst/doc/static_brcancer.pdf |binary inst/doc/static_ccglmExample.pdf |binary inst/doc/static_ccsvmExample.pdf |binary inst/doc/static_german.pdf |binary man/cv.nclreg.Rd | 9 ++++---- man/cv.nclreg_fit.Rd | 9 ++++---- man/cv.zipath.Rd | 2 + man/ncl.Rd | 9 ++++---- man/ncl_fit.Rd | 9 ++++---- man/nclreg.Rd | 9 ++++---- man/nclreg_fit.Rd | 11 +++++----- man/zipath_fit.Rd | 4 +-- vignettes/mpath.bib | 13 +++--------- 22 files changed, 72 insertions(+), 64 deletions(-)
Title: Maps of Peru
Description: Information of the centroids and geographical limits of the regions, departments, provinces and districts of Peru.
Author: Jorge L. C. Musaja [aut, cre]
Maintainer: Jorge L. C. Musaja <musajajorge@gmail.com>
Diff between mapsPERU versions 0.1.3 dated 2021-10-30 and 1.0.2 dated 2021-12-03
mapsPERU-0.1.3/mapsPERU/R/boundaries_DEP.R |only mapsPERU-0.1.3/mapsPERU/R/boundaries_REG.R |only mapsPERU-0.1.3/mapsPERU/R/centroids_DEP.R |only mapsPERU-0.1.3/mapsPERU/R/centroids_REG.R |only mapsPERU-0.1.3/mapsPERU/data/boundaries_DEP.rda |only mapsPERU-0.1.3/mapsPERU/data/boundaries_REG.rda |only mapsPERU-0.1.3/mapsPERU/data/centroids_DEP.rda |only mapsPERU-0.1.3/mapsPERU/data/centroids_REG.rda |only mapsPERU-0.1.3/mapsPERU/man/boundaries_DEP.Rd |only mapsPERU-0.1.3/mapsPERU/man/boundaries_REG.Rd |only mapsPERU-0.1.3/mapsPERU/man/centroids_DEP.Rd |only mapsPERU-0.1.3/mapsPERU/man/centroids_REG.Rd |only mapsPERU-1.0.2/mapsPERU/DESCRIPTION | 8 +++--- mapsPERU-1.0.2/mapsPERU/MD5 | 29 ++++++++++++------------ mapsPERU-1.0.2/mapsPERU/R/map_DEP.R |only mapsPERU-1.0.2/mapsPERU/R/map_DIST.R |only mapsPERU-1.0.2/mapsPERU/R/map_PROV.R |only mapsPERU-1.0.2/mapsPERU/R/map_REG.R |only mapsPERU-1.0.2/mapsPERU/R/msg.R |only mapsPERU-1.0.2/mapsPERU/data/map_DEP.rda |only mapsPERU-1.0.2/mapsPERU/data/map_DIST.rda |only mapsPERU-1.0.2/mapsPERU/data/map_PROV.rda |only mapsPERU-1.0.2/mapsPERU/data/map_REG.rda |only mapsPERU-1.0.2/mapsPERU/man/map_DEP.Rd |only mapsPERU-1.0.2/mapsPERU/man/map_DIST.Rd |only mapsPERU-1.0.2/mapsPERU/man/map_PROV.Rd |only mapsPERU-1.0.2/mapsPERU/man/map_REG.Rd |only mapsPERU-1.0.2/mapsPERU/man/mapsPERU-package.Rd | 2 - 28 files changed, 20 insertions(+), 19 deletions(-)
Title: A Utility to Send Emails from R
Description: Interface to Apache Commons Email to send emails
from R.
Author: Rahul Premraj
Maintainer: Rahul Premraj <r.premraj+mailR@gmail.com>
Diff between mailR versions 0.4.1 dated 2015-01-13 and 0.8 dated 2021-12-03
mailR-0.4.1/mailR/inst/java/commons-email-1.3.3.jar |only mailR-0.8/mailR/DESCRIPTION | 14 - mailR-0.8/mailR/MD5 | 17 - mailR-0.8/mailR/NAMESPACE | 3 mailR-0.8/mailR/R/mailR.R | 185 ++++++++++++-------- mailR-0.8/mailR/README.md | 100 ++++++++-- mailR-0.8/mailR/inst/java/activation.jar |only mailR-0.8/mailR/inst/java/commons-email-1.5.jar |only mailR-0.8/mailR/inst/java/javax.mail.jar |binary mailR-0.8/mailR/java/README | 10 - mailR-0.8/mailR/man/send.mail.Rd | 33 ++- 11 files changed, 245 insertions(+), 117 deletions(-)
Title: Easily Computes the Differential Coexpression Analysis
Description: A function that reads in the GEO code of a list of probesets or gene symbols, a gene expression dataset GEO accession code, the name of the dataset feature discriminating the two conditions for the differential coexpression, and the values of the two different conditions for the differential coexpression. If the input gene list is made of gene symbols, this package associates the probesets to these gene symbols, if found. Platforms available: GPL80, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293, GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>.
Author: Davide Chicco [aut, cre] (<https://orcid.org/0000-0001-9655-7142>)
Maintainer: Davide Chicco <davidechicco@davidechicco.it>
Diff between easyDifferentialGeneCoexpression versions 0.7 dated 2021-12-02 and 0.8 dated 2021-12-03
DESCRIPTION | 12 +++++----- MD5 | 4 +-- R/easyDifferentialGeneCoexpression.r | 39 ++++++++++++++++++++++------------- 3 files changed, 33 insertions(+), 22 deletions(-)
More information about easyDifferentialGeneCoexpression at CRAN
Permanent link
Title: Bayesian Preference Learning with the Mallows Rank Model
Description: An implementation of the Bayesian version of the Mallows rank model
(Vitelli et al., Journal of Machine Learning Research, 2018 <https://jmlr.org/papers/v18/15-481.html>;
Crispino et al., Annals of Applied Statistics, 2019 <doi:10.1214/18-AOAS1203>). Both Metropolis-Hastings
and sequential Monte Carlo algorithms for estimating the models are available. Cayley, footrule,
Hamming, Kendall, Spearman, and Ulam distances are supported in the models. The rank data to be
analyzed can be in the form of complete rankings, top-k rankings, partially missing rankings, as well
as consistent and inconsistent pairwise preferences. Several functions for plotting and studying the
posterior distributions of parameters are provided. The package also provides functions for estimating
the partition function (normalizing constant) of the Mallows rank model, both with the importance
sampling algorithm of Vitelli et al. and asymptotic approximation with the IPFP algorithm
(Mukherjee, Annals of Statistics, 2016 <doi:10.1214/15-AOS1389>).
Author: Oystein Sorensen [aut, cre] (<https://orcid.org/0000-0003-0724-3542>),
Valeria Vitelli [aut] (<https://orcid.org/0000-0002-6746-0453>),
Marta Crispino [aut],
Qinghua Liu [aut],
Cristina Mollica [aut],
Luca Tardella [aut],
Anja Stein [aut],
Waldir Leoncio [ctr]
Maintainer: Oystein Sorensen <oystein.sorensen.1985@gmail.com>
Diff between BayesMallows versions 1.0.4 dated 2021-11-17 and 1.1.0 dated 2021-12-03
BayesMallows-1.0.4/BayesMallows/tests/testthat/test_assess_convergence.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_compute_consensus.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_compute_mallows.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_distance_function.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_estimate_partition_function.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_expected_dist.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_generate_ranking.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_lik_db_mix.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_mcmc_function.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_misc_cpp.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_misc_functions.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_partition_function.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_plot.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_plot_elbow.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_plot_top_k.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_print.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_random_number_seed.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_rank_conversion.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_rank_freq_distr.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_sample_mallows.R |only BayesMallows-1.0.4/BayesMallows/tests/testthat/test_transitive_closure.R |only BayesMallows-1.1.0/BayesMallows/DESCRIPTION | 38 BayesMallows-1.1.0/BayesMallows/MD5 | 192 ++-- BayesMallows-1.1.0/BayesMallows/NAMESPACE | 28 BayesMallows-1.1.0/BayesMallows/NEWS.md | 17 BayesMallows-1.1.0/BayesMallows/R/RcppExports.R | 461 +++++++++- BayesMallows-1.1.0/BayesMallows/R/assess_convergence.R | 10 BayesMallows-1.1.0/BayesMallows/R/assign_cluster.R | 14 BayesMallows-1.1.0/BayesMallows/R/compute_consensus.R | 272 +++++ BayesMallows-1.1.0/BayesMallows/R/compute_mallows.R | 9 BayesMallows-1.1.0/BayesMallows/R/compute_mallows_mixtures.R | 2 BayesMallows-1.1.0/BayesMallows/R/compute_posterior_intervals.R | 165 +++ BayesMallows-1.1.0/BayesMallows/R/data.R | 18 BayesMallows-1.1.0/BayesMallows/R/generate_constraints.R | 23 BayesMallows-1.1.0/BayesMallows/R/generate_initial_ranking.R | 2 BayesMallows-1.1.0/BayesMallows/R/misc.R | 16 BayesMallows-1.1.0/BayesMallows/R/misc_likelihood.R | 4 BayesMallows-1.1.0/BayesMallows/R/plot_elbow.R | 4 BayesMallows-1.1.0/BayesMallows/R/plot_top_k.R | 12 BayesMallows-1.1.0/BayesMallows/R/predict_top_k.R | 14 BayesMallows-1.1.0/BayesMallows/R/print.BayesMallowsMixtures.R | 4 BayesMallows-1.1.0/BayesMallows/R/rank_conversion.R | 9 BayesMallows-1.1.0/BayesMallows/R/sample_mallows.R | 23 BayesMallows-1.1.0/BayesMallows/R/smc_post_processing_functions.R |only BayesMallows-1.1.0/BayesMallows/build/partial.rdb |binary BayesMallows-1.1.0/BayesMallows/build/vignette.rds |binary BayesMallows-1.1.0/BayesMallows/data/data_10_6_smc.rda |only BayesMallows-1.1.0/BayesMallows/inst/CITATION | 1 BayesMallows-1.1.0/BayesMallows/inst/REFERENCES.bib | 74 + BayesMallows-1.1.0/BayesMallows/inst/doc/SMC-Mallows.R |only BayesMallows-1.1.0/BayesMallows/inst/doc/SMC-Mallows.Rmd |only BayesMallows-1.1.0/BayesMallows/inst/doc/SMC-Mallows.html |only BayesMallows-1.1.0/BayesMallows/inst/examples/compute_consensus_example.R | 8 BayesMallows-1.1.0/BayesMallows/inst/examples/compute_mallows_mixtures_example.R | 13 BayesMallows-1.1.0/BayesMallows/inst/examples/label_switching_example.R | 23 BayesMallows-1.1.0/BayesMallows/inst/examples/metropolis_hastings_alpha_example.R |only BayesMallows-1.1.0/BayesMallows/inst/examples/obs_freq_example.R | 23 BayesMallows-1.1.0/BayesMallows/inst/examples/smc_mallows_new_users_complete_example.R |only BayesMallows-1.1.0/BayesMallows/man/calculate_backward_probability.Rd |only BayesMallows-1.1.0/BayesMallows/man/calculate_forward_probability.Rd |only BayesMallows-1.1.0/BayesMallows/man/compute_consensus.BayesMallows.Rd |only BayesMallows-1.1.0/BayesMallows/man/compute_consensus.Rd | 37 BayesMallows-1.1.0/BayesMallows/man/compute_consensus.consensus_SMCMallows.Rd |only BayesMallows-1.1.0/BayesMallows/man/compute_mallows_mixtures.Rd | 13 BayesMallows-1.1.0/BayesMallows/man/compute_posterior_intervals.BayesMallows.Rd |only BayesMallows-1.1.0/BayesMallows/man/compute_posterior_intervals.Rd | 22 BayesMallows-1.1.0/BayesMallows/man/compute_posterior_intervals.SMCMallows.Rd |only BayesMallows-1.1.0/BayesMallows/man/compute_posterior_intervals_alpha.Rd |only BayesMallows-1.1.0/BayesMallows/man/compute_posterior_intervals_rho.Rd |only BayesMallows-1.1.0/BayesMallows/man/compute_rho_consensus.Rd |only BayesMallows-1.1.0/BayesMallows/man/correction_kernel.Rd |only BayesMallows-1.1.0/BayesMallows/man/correction_kernel_pseudo.Rd |only BayesMallows-1.1.0/BayesMallows/man/figures/README-unnamed-chunk-5-1.png |binary BayesMallows-1.1.0/BayesMallows/man/figures/README-unnamed-chunk-6-1.png |binary BayesMallows-1.1.0/BayesMallows/man/generate_initial_ranking.Rd | 2 BayesMallows-1.1.0/BayesMallows/man/get_mallows_loglik.Rd |only BayesMallows-1.1.0/BayesMallows/man/get_sample_probabilities.Rd |only BayesMallows-1.1.0/BayesMallows/man/label_switching.Rd | 23 BayesMallows-1.1.0/BayesMallows/man/leap_and_shift_probs.Rd |only BayesMallows-1.1.0/BayesMallows/man/metropolis_hastings_alpha.Rd |only BayesMallows-1.1.0/BayesMallows/man/metropolis_hastings_aug_ranking.Rd |only BayesMallows-1.1.0/BayesMallows/man/metropolis_hastings_aug_ranking_pseudo.Rd |only BayesMallows-1.1.0/BayesMallows/man/metropolis_hastings_rho.Rd |only BayesMallows-1.1.0/BayesMallows/man/obs_freq.Rd | 23 BayesMallows-1.1.0/BayesMallows/man/plot_alpha_posterior.Rd |only BayesMallows-1.1.0/BayesMallows/man/plot_elbow.Rd | 13 BayesMallows-1.1.0/BayesMallows/man/plot_rho_posterior.Rd |only BayesMallows-1.1.0/BayesMallows/man/sample_dataset.Rd |only BayesMallows-1.1.0/BayesMallows/man/smc_mallows_new_item_rank.Rd |only BayesMallows-1.1.0/BayesMallows/man/smc_mallows_new_item_rank_alpha_fixed.Rd |only BayesMallows-1.1.0/BayesMallows/man/smc_mallows_new_users_complete.Rd |only BayesMallows-1.1.0/BayesMallows/man/smc_mallows_new_users_partial.Rd |only BayesMallows-1.1.0/BayesMallows/man/smc_mallows_new_users_partial_alpha_fixed.Rd |only BayesMallows-1.1.0/BayesMallows/man/smc_processing.Rd |only BayesMallows-1.1.0/BayesMallows/src/RcppExports.cpp | 305 ++++++ BayesMallows-1.1.0/BayesMallows/src/distances.cpp | 1 BayesMallows-1.1.0/BayesMallows/src/misc.cpp | 20 BayesMallows-1.1.0/BayesMallows/src/misc.h | 1 BayesMallows-1.1.0/BayesMallows/src/missing_data.cpp | 2 BayesMallows-1.1.0/BayesMallows/src/smc.h |only BayesMallows-1.1.0/BayesMallows/src/smc_calculate_backward_probability.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_calculate_forward_probability.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_correction_kernel.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_correction_kernel_pseudo.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_get_mallows_loglik.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_get_sample_probabilities.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_leap_and_shift_probs.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_mallows_new_item_rank.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_mallows_new_item_rank_alpha_fixed.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_mallows_new_users_complete.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_mallows_new_users_partial.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_mallows_new_users_partial_alpha_fixed.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_metropolis_hastings_alpha.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_metropolis_hastings_aug_ranking.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_metropolis_hastings_aug_ranking_pseudo.cpp |only BayesMallows-1.1.0/BayesMallows/src/smc_metropolis_hastings_rho.cpp |only BayesMallows-1.1.0/BayesMallows/tests/testthat.R | 1 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-assess_convergence.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-bulletproofing.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-classes_compute_consensus_posterior.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-compute_consensus.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-compute_mallows.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-distance_function.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-estimate_partition_function.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-expected_dist.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-generate_ranking.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-lik_db_mix.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-mcmc_function.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-misc_cpp.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-misc_functions.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-partition_function.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-plot.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-plot_elbow.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-plot_top_k.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-print.R | 29 BayesMallows-1.1.0/BayesMallows/tests/testthat/test-random_number_seed.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-rank_conversion.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-rank_freq_distr.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-sample_mallows.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-smc_compute_rho_consensus.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-smc_individual_functions.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-smc_mallows_complete_rankings.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-smc_mallows_new_item_rank.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-smc_mallows_partial_rankings.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-smc_pseudolikelihood.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-smc_uniform.R |only BayesMallows-1.1.0/BayesMallows/tests/testthat/test-transitive_closure.R |only BayesMallows-1.1.0/BayesMallows/vignettes/SMC-Mallows.Rmd |only 148 files changed, 1664 insertions(+), 307 deletions(-)
Title: Tidy Temporal Data Frames and Tools
Description: Provides a 'tbl_ts' class (the 'tsibble') for
temporal data in an data- and model-oriented format. The 'tsibble'
provides tools to easily manipulate and analyse temporal data, such as
filling in time gaps and aggregating over calendar periods.
Author: Earo Wang [aut, cre] (<https://orcid.org/0000-0001-6448-5260>),
Di Cook [aut, ths] (<https://orcid.org/0000-0002-3813-7155>),
Rob Hyndman [aut, ths] (<https://orcid.org/0000-0002-2140-5352>),
Mitchell O'Hara-Wild [aut] (<https://orcid.org/0000-0001-6729-7695>),
Tyler Smith [ctb],
Wil Davis [ctb]
Maintainer: Earo Wang <earo.wang@gmail.com>
Diff between tsibble versions 1.1.0 dated 2021-10-22 and 1.1.1 dated 2021-12-03
DESCRIPTION | 6 - MD5 | 34 +++--- NAMESPACE | 3 NEWS.md | 5 R/gaps.R | 18 ++- R/yearmonth.R | 12 ++ R/yearquarter.R | 19 +++ R/yearweek.R | 16 ++- README.md | 6 - build/tsibble.pdf |binary inst/doc/faq.html | 196 +++++++++++++++++++++++++++++++++++++- inst/doc/implicit-na.html | 196 +++++++++++++++++++++++++++++++++++++- inst/doc/intro-tsibble.html | 196 +++++++++++++++++++++++++++++++++++++- man/year-month.Rd | 8 + man/year-quarter.Rd | 8 + man/year-week.Rd | 13 ++ tests/testthat/test-gaps.R | 4 tests/testthat/test-yearquarter.R | 2 18 files changed, 701 insertions(+), 41 deletions(-)
Title: Analytics, Data Mining & Machine Learning Sidekick
Description: Auxiliary package for better/faster analytics, visualization, data mining, and machine learning
tasks. With a wide variety of family functions, like Machine Learning, Data Wrangling,
Exploratory, and Scrapper, it helps the analyst or data scientist to get quick and robust
results, without the need of repetitive coding or extensive programming skills.
Author: Bernardo Lares [aut, cre]
Maintainer: Bernardo Lares <laresbernardo@gmail.com>
Diff between lares versions 5.0.3 dated 2021-11-16 and 5.0.4 dated 2021-12-03
DESCRIPTION | 6 - MD5 | 14 +-- R/correlations.R | 2 R/onehotencoding.R | 184 ++++++++++++++++++++++---------------------- R/other_functions.R | 15 +-- inst/doc/h2o_automl.html | 194 +++++++++++++++++++++++------------------------ man/balance_data.Rd | 2 man/date_feats.Rd | 5 - 8 files changed, 212 insertions(+), 210 deletions(-)
Title: Checks for Exclusion Criteria in Online Data
Description: Data that are collected through online sources such as Mechanical
Turk may require excluding rows because of IP address duplication,
geolocation, or completion duration. This package facilitates
exclusion of these data for Qualtrics datasets.
Author: Jeffrey R. Stevens [aut, cre, cph]
(<https://orcid.org/0000-0003-2375-1360>),
Joseph O'Brien [rev] (<https://orcid.org/0000-0001-9851-5077>),
Julia Silge [rev] (<https://orcid.org/0000-0002-3671-836X>)
Maintainer: Jeffrey R. Stevens <jeffrey.r.stevens@gmail.com>
Diff between excluder versions 0.3.2 dated 2021-11-18 and 0.3.3 dated 2021-12-03
excluder-0.3.2/excluder/tests/testthat/deprecated |only excluder-0.3.3/excluder/DESCRIPTION | 6 +++--- excluder-0.3.3/excluder/MD5 | 13 +++++-------- excluder-0.3.3/excluder/NEWS.md | 13 ++++++++++--- excluder-0.3.3/excluder/R/location.R | 2 +- excluder-0.3.3/excluder/R/remove_label_rows.R | 15 ++++++++++++++- excluder-0.3.3/excluder/README.md | 17 +++++++++++------ 7 files changed, 44 insertions(+), 22 deletions(-)
More information about MulvariateRandomForestVarImp at CRAN
Permanent link
Title: Create Ternary Plots
Description: Plots ternary diagrams (simplex plots / Gibbs triangles) using the
standard graphics functions.
An alternative to 'ggtern', which uses the 'ggplot2' family of plotting
functions.
Includes a 'Shiny' user interface for point-and-click plotting.
Author: Martin R. Smith [aut, cre, cph]
(<https://orcid.org/0000-0001-5660-1727>),
Lilian Sanselme [ctb]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Diff between Ternary versions 1.2.3 dated 2021-10-08 and 1.2.4 dated 2021-12-03
Ternary-1.2.3/Ternary/inst/TernaryApp |only Ternary-1.2.4/Ternary/DESCRIPTION | 8 - Ternary-1.2.4/Ternary/MD5 | 60 ++++------ Ternary-1.2.4/Ternary/NEWS.md | 7 + Ternary-1.2.4/Ternary/R/Contours.R | 58 +++++++-- Ternary-1.2.4/Ternary/R/Coordinates.R | 15 +- Ternary-1.2.4/Ternary/R/TernaryPlot.R | 8 - Ternary-1.2.4/Ternary/R/zzz.R | 2 Ternary-1.2.4/Ternary/README.md | 9 + Ternary-1.2.4/Ternary/build/partial.rdb |binary Ternary-1.2.4/Ternary/build/vignette.rds |binary Ternary-1.2.4/Ternary/inst/CITATION | 19 +-- Ternary-1.2.4/Ternary/inst/WORDLIST | 2 Ternary-1.2.4/Ternary/inst/doc/Ternary.html | 6 - Ternary-1.2.4/Ternary/inst/doc/interpolation.html | 4 Ternary-1.2.4/Ternary/man/ColourTernary.Rd | 4 Ternary-1.2.4/Ternary/man/ReflectedEquivalents.Rd | 2 Ternary-1.2.4/Ternary/man/TernaryContour.Rd | 28 ++++ Ternary-1.2.4/Ternary/man/TernaryCoords.Rd | 8 - Ternary-1.2.4/Ternary/man/TernaryDensityContour.Rd | 2 Ternary-1.2.4/Ternary/man/TernaryPlot.Rd | 2 Ternary-1.2.4/Ternary/man/TernaryPointValues.Rd | 8 - Ternary-1.2.4/Ternary/man/TernaryTiles.Rd | 2 Ternary-1.2.4/Ternary/man/TernaryXRange.Rd | 4 Ternary-1.2.4/Ternary/man/TriangleCentres.Rd | 2 Ternary-1.2.4/Ternary/man/XYToTernary.Rd | 2 Ternary-1.2.4/Ternary/tests/testthat/Rplots.pdf |binary Ternary-1.2.4/Ternary/tests/testthat/_snaps/Contours/contour-error-handling.svg |only Ternary-1.2.4/Ternary/tests/testthat/test-Contours.R | 31 +++-- 29 files changed, 183 insertions(+), 110 deletions(-)
Title: Proportional Odds Model with Censored, Time-Lagged Categorical
Outcome
Description: Implements a semiparametric estimator for the odds ratio model with
censored, time-lagged, ordered categorical outcome in a randomized clinical
trial that incorporates baseline and time-dependent information.
Tsiatis, A. A. and Davidian, M. (2021) <arXiv:2106.15559>.
Author: Marie Davidian [aut],
A. A. Tsiatis [aut],
Shannon T. Holloway [aut, cre]
Maintainer: Shannon T. Holloway <sthollow@ncsu.edu>
Diff between tLagPropOdds versions 1.2 dated 2021-10-21 and 1.5 dated 2021-12-03
DESCRIPTION | 10 +++++----- MD5 | 16 ++++++++-------- NEWS | 13 +++++++++++++ R/aipw.R | 8 ++++---- R/augment.R | 9 ++++++--- R/infl.R | 34 ++++++++++++++++++++++++++++------ R/kaplanMeier.R | 15 ++++++++------- R/tLagPropOdds.R | 6 +++--- man/tLagPropOdds.Rd | 5 +++-- 9 files changed, 78 insertions(+), 38 deletions(-)
Title: Species Distribution Modelling Predictor Datasets
Description: Terrestrial and marine predictors for species distribution modelling
from multiple sources, including WorldClim <https://www.worldclim.org/>,,
ENVIREM <https://envirem.github.io/>, Bio-ORACLE <https://bio-oracle.org/>
and MARSPEC <http://www.marspec.org/>.
Author: Samuel Bosch [aut],
Lennert Tyberghein [ctb],
Olivier De Clerck [ctb],
Salvador Fernandez [aut, cre],
Lennert Schepers [ctb]
Maintainer: Salvador Fernandez <salvador.fernandez@vliz.be>
Diff between sdmpredictors versions 0.2.10 dated 2021-09-20 and 0.2.11 dated 2021-12-03
DESCRIPTION | 12 +++---- MD5 | 22 +++++++------- NEWS.md | 4 ++ R/get_sysdata.R | 31 ------------------- R/sysdata.rda |binary build/partial.rdb |binary inst/doc/quickstart.html | 4 +- tests/testthat/test_compression.R | 4 +- tests/testthat/test_get_sysdata.R | 22 -------------- tests/testthat/test_list.R | 10 ++++++ tests/testthat/test_load.R | 59 -------------------------------------- tests/testthat/test_stats.R | 2 - 12 files changed, 37 insertions(+), 133 deletions(-)
Title: 'Coroutines' for R
Description: Provides 'coroutines' for R, a family of functions that
can be suspended and resumed later on. This includes 'async'
functions (which await) and generators (which yield). 'Async'
functions are based on the concurrency framework of the 'promises'
package. Generators are based on a dependency free iteration
protocol defined in 'coro' and are compatible with iterators from
the 'reticulate' package.
Author: Lionel Henry [aut, cre],
RStudio [cph]
Maintainer: Lionel Henry <lionel@rstudio.com>
Diff between coro versions 1.0.1 dated 2020-12-17 and 1.0.2 dated 2021-12-03
DESCRIPTION | 11 ++---- MD5 | 62 +++++++++++++++++------------------ NEWS.md | 12 ++++++ R/aaa.R | 1 R/generator.R | 22 +++++++----- R/iterator-collect.R | 2 - R/iterator.R | 24 +++++++++++-- R/parser.R | 1 R/utils-node.R | 1 R/utils-parser.R | 1 R/utils-promises.R | 1 R/utils-vector.R | 1 R/utils.R | 5 -- build/vignette.rds |binary inst/doc/generator.html | 22 ++++++++---- man/async_ops.Rd | 2 - man/coro-package.Rd | 9 +---- man/iterator.Rd | 32 ++++++++++++++---- tests/testthat/helper-async.R | 1 tests/testthat/helper-flowery.R | 17 ++++++--- tests/testthat/helper-parser.R | 1 tests/testthat/test-async.R | 1 tests/testthat/test-generator.R | 3 - tests/testthat/test-iterator-adapt.R | 1 tests/testthat/test-iterator-for.R | 1 tests/testthat/test-iterator.R | 1 tests/testthat/test-parser-block.R | 1 tests/testthat/test-parser-if.R | 1 tests/testthat/test-parser-loop.R | 1 tests/testthat/test-parser.R | 1 tests/testthat/test-step-reduce.R | 1 tests/testthat/test-step.R | 1 32 files changed, 141 insertions(+), 100 deletions(-)
Title: 3D Brain Visualization
Description: A fast, interactive cross-platform, and easy to share
'WebGL'-based 3D brain viewer that visualizes 'FreeSurfer' and/or
'AFNI/SUMA' surfaces. The viewer widget can be either standalone or
embedded into 'R-shiny' applications. The standalone version only require
a web browser with 'WebGL2' support (for example, 'Chrome'). It can be
inserted into any websites; see <https://dipterix.org/project/threebrain/>).
as an example. The 'R-shiny' support allows the 3D viewer to be dynamically
generated from reactive user inputs. This feature has been fully adopted by
'RAVE' <https://openwetware.org/wiki/RAVE>, an interactive toolbox to
analyze 'iEEG/eCoG' data. Documentation about 'threeBrain' is provided
by <https://dipterix.org/threeBrain/> and several vignettes included
in this package. To cite the package, please check our 'NeuroImage' paper
by Magnotti, Wang, and Beauchamp (2020, <doi:10.1016/j.neuroimage.2020.117341>),
or see 'citation("threeBrain")' for details.
Author: Zhengjia Wang [aut, cre, cph],
John Magnotti [aut],
Xiang Zhang [ctb, res],
Brian Metzger [res],
Elizabeth Nesbitt [res],
Meng Li [ths],
Michael Beauchamp [aut, dtc]
Maintainer: Zhengjia Wang <dipterix.wang@gmail.com>
Diff between threeBrain versions 0.2.3 dated 2021-10-13 and 0.2.4 dated 2021-12-03
DESCRIPTION | 6 MD5 | 24 NEWS.md | 21 R/class_animations.R | 4 R/class_brain.R | 24 R/class_brainatlas.R | 16 R/class_multibrain.R | 1 R/geom_free.R | 2 R/shiny-localization.R | 20 R/zzz.R | 69 build/vignette.rds |binary inst/htmlwidgets/lib/dipterixThreeBrain-1.0.1/main.js | 2336 +++++++++++++++--- man/voxel_cube.Rd | 6 13 files changed, 2144 insertions(+), 385 deletions(-)
Title: Quantum Walk-Based Data Analysis and Prediction
Description: Modeling and predicting time series based on continuous time quantum.This package can be divided into three parts: Basis Generation, Data Modeling and Prediction, and Model Evaluation according to the analysis process of time series. 'Basis Generation' has realized the continuous time quantum walk simulation for generating modes as the basis. Some regression methods are used to model the observed time series and predict in 'Data Modeling and Prediction', and 'Model Evaluation' can be used to evaluate the data correspondence between two series.
Author: Binghuang Pan [aut, cre],
Zhaoyuan Yu [aut],
Xu Hu [ctb],
Dongshuang Li [ctb],
Yuhao Teng [ctb],
Xinxin Zhou [ctb]
Maintainer: Binghuang Pan <bright1up@163.com>
Diff between QWDAP versions 1.1.7 dated 2021-11-25 and 1.1.8 dated 2021-12-03
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/var.r | 12 +++--------- man/qwdap.var.Rd | 4 +--- 4 files changed, 11 insertions(+), 19 deletions(-)
Title: R at the Command-Line via 'r'
Description: A scripting and command-line front-end
is provided by 'r' (aka 'littler') as a lightweight binary wrapper around
the GNU R language and environment for statistical computing and graphics.
While R can be used in batch mode, the r binary adds full support for
both 'shebang'-style scripting (i.e. using a hash-mark-exclamation-path
expression as the first line in scripts) as well as command-line use in
standard Unix pipelines. In other words, r provides the R language without
the environment.
Author: Dirk Eddelbuettel and Jeff Horner
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between littler versions 0.3.14 dated 2021-10-05 and 0.3.15 dated 2021-12-03
littler-0.3.14/littler/inst/doc/littler-examples.R |only littler-0.3.14/littler/inst/doc/littler-examples.Rmd |only littler-0.3.14/littler/inst/doc/littler-faq.R |only littler-0.3.14/littler/inst/doc/littler-faq.Rmd |only littler-0.3.14/littler/vignettes/littler-examples.Rmd |only littler-0.3.14/littler/vignettes/littler-faq.Rmd |only littler-0.3.15/littler/ChangeLog | 53 + littler-0.3.15/littler/DESCRIPTION | 12 littler-0.3.15/littler/MD5 | 38 littler-0.3.15/littler/README.md | 24 littler-0.3.15/littler/build/vignette.rds |binary littler-0.3.15/littler/configure | 18 littler-0.3.15/littler/configure.ac | 2 littler-0.3.15/littler/inst/NEWS.Rd | 21 littler-0.3.15/littler/inst/doc/littler-examples.html | 729 +++++++-------- littler-0.3.15/littler/inst/doc/littler-examples.md |only littler-0.3.15/littler/inst/doc/littler-faq.html | 151 +-- littler-0.3.15/littler/inst/doc/littler-faq.md |only littler-0.3.15/littler/inst/examples/build.r | 7 littler-0.3.15/littler/inst/examples/getRStudioDesktop.r | 18 littler-0.3.15/littler/inst/examples/getRStudioServer.r | 20 littler-0.3.15/littler/inst/examples/install2.r | 13 littler-0.3.15/littler/inst/examples/mdweave2html.r |only littler-0.3.15/littler/vignettes/littler-examples.md |only littler-0.3.15/littler/vignettes/littler-faq.md |only littler-0.3.15/littler/vignettes/water.css |only 26 files changed, 612 insertions(+), 494 deletions(-)
Title: Fast Truncated Singular Value Decomposition and Principal
Components Analysis for Large Dense and Sparse Matrices
Description: Fast and memory efficient methods for truncated singular value
decomposition and principal components analysis of large sparse and dense
matrices.
Author: Jim Baglama [aut, cph],
Lothar Reichel [aut, cph],
B. W. Lewis [aut, cre, cph]
Maintainer: B. W. Lewis <blewis@illposed.net>
Diff between irlba versions 2.3.3 dated 2019-02-05 and 2.3.4 dated 2021-12-03
DESCRIPTION | 12 ++++++------ MD5 | 11 ++++++----- README | 3 ++- README.md |only build/vignette.rds |binary inst/doc/irlba.pdf |binary src/irlb.c | 23 ++++++++++++++--------- 7 files changed, 28 insertions(+), 21 deletions(-)
Title: Analysis of Aerobiological Data
Description: Supports analysis of aerobiological data.
Available features include determination of pollen season limits,
replacement of outliers (Kasprzyk and Walanus (2014) <doi:10.1007/s10453-014-9332-8>),
calculation of growing degree days (Baskerville and Emin (1969) <doi:10.2307/1933912>),
and determination of the base temperature for growing degree days
(Yang et al. (1995) <doi:10.1016/0168-1923(94)02185-M).
Author: Jakub Nowosad [aut, cre] (<https://orcid.org/0000-0002-1057-3721>)
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between pollen versions 0.72.0 dated 2020-03-15 and 0.82.0 dated 2021-12-03
DESCRIPTION | 12 - MD5 | 38 +-- NAMESPACE | 3 R/base_temp.R |only R/gdd.R | 4 R/pollen_season.R | 4 README.md | 12 - build/vignette.rds |binary inst/doc/gdd.Rmd | 6 inst/doc/gdd.html | 334 ++++++++-------------------- inst/doc/intro.R | 2 inst/doc/intro.Rmd | 9 inst/doc/intro.html | 474 ++++++++++++++-------------------------- inst/refs.bib |only man/base_temp.Rd |only man/gdd.Rd | 3 man/gdd_data.Rd | 6 man/pollen-package.Rd | 5 man/pollen_count.Rd | 6 tests/testthat/test-base_temp.R |only vignettes/gdd.Rmd | 6 vignettes/intro.Rmd | 9 22 files changed, 345 insertions(+), 588 deletions(-)
Title: Download Geographic Data
Description: Functions for downloading of geographic data for use in spatial data analysis and mapping. The package facilitates access to climate, elevation, soil, species occurrence, and administrative boundary data.
Author: Robert J. Hijmans [cre, aut], Aniruddha Ghosh [ctb], Alex Mandel [ctb]
Maintainer: Robert J. Hijmans <r.hijmans@gmail.com>
Diff between geodata versions 0.3-2 dated 2021-09-29 and 0.3-5 dated 2021-12-03
DESCRIPTION | 8 ++--- MD5 | 64 ++++++++++++++++++++++----------------------- R/countries.R | 2 - R/crop_sacks.R | 6 ++-- R/crop_spam.R | 19 ++++++++++--- R/crops_monfreda.R | 4 +- R/elevation.R | 57 ++++++++++------------------------------ R/gadm.R | 12 ++++---- R/helper-functions.R | 44 +++++++++++++++++++++++++++++- R/landuse.R | 5 ++- R/occurrence.R | 19 +++++++------ R/pop.R | 18 ++++-------- R/soil_afsis.R | 35 +++++++----------------- R/soil_grids.R | 4 +- R/soil_isda.R | 8 ++--- R/worldclim.R | 27 +++++++++--------- build/partial.rdb |binary man/cmip6.Rd | 3 +- man/crop_calendar_Sachs.Rd | 5 ++- man/crop_monfreda.Rd | 13 ++++----- man/crop_spam.Rd | 5 ++- man/elevation.Rd | 12 +++----- man/gadm.Rd | 7 ++-- man/geodata-package.Rd | 28 ++++++++++++++++--- man/landuse.Rd | 7 ++-- man/population.Rd | 3 +- man/soil_af.Rd | 9 ++++-- man/soil_af_elements.Rd | 6 ++-- man/soil_af_isda.Rd | 5 ++- man/soil_grids.Rd | 5 ++- man/soil_grids_vsi.Rd | 1 man/sp_occurrence.Rd | 3 +- man/worldclim.Rd | 7 ++-- 33 files changed, 247 insertions(+), 204 deletions(-)
Title: Estimations using Conley Standard Errors
Description: Functions calculating Conley (1999) <doi:10.1016/S0304-4076(98)00084-0> standard errors. The package started by merging and extending multiple packages and
other published scripts on this econometric technique. It strongly emphasizes computational optimization. Details are available in the function documentation and in
the vignette.
Author: Christian Düben [aut, cre],
Richard Bluhm [cph],
Luis Calderon [cph],
Darin Christensen [cph],
Timothy Conley [cph],
Thiemo Fetzer [cph],
Leander Heldring [cph]
Maintainer: Christian Düben <christian.dueben@uni-hamburg.de>
Diff between conleyreg versions 0.1.4 dated 2021-06-28 and 0.1.5 dated 2021-12-03
conleyreg-0.1.4/conleyreg/src/conleyreg.cpp |only conleyreg-0.1.4/conleyreg/vignettes/matrix_ctimes.png |only conleyreg-0.1.5/conleyreg/DESCRIPTION | 17 conleyreg-0.1.5/conleyreg/MD5 | 52 conleyreg-0.1.5/conleyreg/NAMESPACE | 23 conleyreg-0.1.5/conleyreg/NEWS.md | 15 conleyreg-0.1.5/conleyreg/R/RcppExports.R | 124 conleyreg-0.1.5/conleyreg/R/conleyreg.R | 1376 +++++++--- conleyreg-0.1.5/conleyreg/R/dist_mat.R |only conleyreg-0.1.5/conleyreg/R/rnd_locations.R |only conleyreg-0.1.5/conleyreg/README.md | 4 conleyreg-0.1.5/conleyreg/build/partial.rdb |binary conleyreg-0.1.5/conleyreg/build/vignette.rds |binary conleyreg-0.1.5/conleyreg/inst/doc/conleyreg_introduction.R | 22 conleyreg-0.1.5/conleyreg/inst/doc/conleyreg_introduction.Rmd | 93 conleyreg-0.1.5/conleyreg/inst/doc/conleyreg_introduction.html | 224 - conleyreg-0.1.5/conleyreg/man/conleyreg.Rd | 164 - conleyreg-0.1.5/conleyreg/man/dist_mat.Rd |only conleyreg-0.1.5/conleyreg/man/rnd_locations.Rd |only conleyreg-0.1.5/conleyreg/src/RcppExports.cpp | 579 ++-- conleyreg-0.1.5/conleyreg/src/XeeXhC.cpp |only conleyreg-0.1.5/conleyreg/src/XeeXhC.h |only conleyreg-0.1.5/conleyreg/src/XeeXhC_R.cpp |only conleyreg-0.1.5/conleyreg/src/dist_mat.cpp |only conleyreg-0.1.5/conleyreg/src/distance_functions.cpp |only conleyreg-0.1.5/conleyreg/src/distance_functions.h |only conleyreg-0.1.5/conleyreg/src/distance_matrices.cpp |only conleyreg-0.1.5/conleyreg/src/distance_matrices.h |only conleyreg-0.1.5/conleyreg/src/isbalanced.cpp |only conleyreg-0.1.5/conleyreg/src/lp.cpp |only conleyreg-0.1.5/conleyreg/src/lp_filling.cpp |only conleyreg-0.1.5/conleyreg/src/lp_filling.h |only conleyreg-0.1.5/conleyreg/src/lp_filling_R.cpp |only conleyreg-0.1.5/conleyreg/src/lp_vcov.cpp |only conleyreg-0.1.5/conleyreg/src/ols.cpp |only conleyreg-0.1.5/conleyreg/src/time_dist.cpp |only conleyreg-0.1.5/conleyreg/vignettes/conleyreg_introduction.Rmd | 93 conleyreg-0.1.5/conleyreg/vignettes/matrix_bctimes.png |binary 38 files changed, 1798 insertions(+), 988 deletions(-)
More information about ActivePathways at CRAN
Permanent link
Title: Lazy Search in R Packages, Task Views, CRAN, the Web. All-in-One
Download
Description: Search by keywords in R packages, task views, CRAN, the web and display the results in the console or in txt, html or pdf files. Download the package documentation (html index, README, NEWS, pdf manual, vignettes, source code, binaries) with a single instruction. Visualize the package dependencies and CRAN checks. Compare the package versions, unload and install the packages and their dependencies in a safe order. Explore CRAN archives. Use the above functions for task view maintenance. Access web search engines from the console thanks to 80+ bookmarks. All functions accept standard and non-standard evaluation.
Author: Patrice Kiener [aut, cre] (<https://orcid.org/0000-0002-0505-9920>)
Maintainer: Patrice Kiener <rpackages@inmodelia.com>
Diff between RWsearch versions 4.9.3 dated 2021-06-05 and 4.9.8 dated 2021-12-03
DESCRIPTION | 10 - MD5 | 50 ++--- NAMESPACE | 2 NEWS | 43 ++++ R/a_intro.R | 66 +++++- R/archivedb.R | 10 - R/binarydb.R |only R/checkdb.R | 10 - R/crandb.R | 14 + R/cranmirrors.R | 15 - R/p_archive.R | 4 R/p_check.R | 4 R/p_down.R | 34 --- R/p_html.R | 9 R/p_vers.R | 125 +++++++++---- R/s_sos.R | 10 - R/tvdb.R | 25 +- inst/doc/RWsearch-1-Introduction.html | 4 inst/doc/RWsearch-2-Display-Download-Documentation.html | 4 inst/doc/RWsearch-3-Package-versions-and-dependencies.html | 4 inst/doc/RWsearch-4-Tools-for-taskviews.html | 4 inst/doc/RWsearch-5-Web-search-engines.html | 4 man/RWsearch-package.Rd | 3 man/binarydb.Rd |only man/p_html.Rd | 5 man/p_vers.Rd | 35 ++- man/s_sos.Rd | 7 27 files changed, 330 insertions(+), 171 deletions(-)
Title: A Collection of Efficient and Extremely Fast R Functions
Description: A collection of fast (utility) functions for data analysis. Column- and row- wise means, medians, variances, minimums, maximums, many t, F and G-square tests, many regressions (normal, logistic, Poisson), are some of the many fast functions. References: a) Tsagris M., Papadakis M. (2018). Taking R to its limits: 70+ tips. PeerJ Preprints 6:e26605v1 <doi:10.7287/peerj.preprints.26605v1>. b) Tsagris M. and Papadakis M. (2018). Forward regression in R: from the extreme slow to the extreme fast. Journal of Data Science, 16(4): 771--780. <doi:10.6339/JDS.201810_16(4).00006>.
Author: Manos Papadakis, Michail Tsagris, Marios Dimitriadis, Stefanos Fafalios, Ioannis Tsamardinos, Matteo Fasiolo, Giorgos Borboudakis, John Burkardt, Changliang Zou, Kleanthi Lakiotaki and Christina Chatzipantsiou.
Maintainer: Manos Papadakis <rfastofficial@gmail.com>
Diff between Rfast versions 2.0.3 dated 2021-05-17 and 2.0.4 dated 2021-12-03
DESCRIPTION | 10 MD5 | 44 - NAMESPACE | 16 NEWS.md | 930 +++++++++++----------------- R/positive_mle.R | 4 R/ranef_mle_regressions_repeated_measures.R | 6 R/regression_models.R | 21 R/score_tests.R | 8 R/sum.R | 8 R/variable_selection.R | 191 +++-- inst/include/Rfast/templates.h | 117 +++ man/Outer.Rd | 6 man/Rfast-package.Rd | 4 man/colrint.regbx.Rd | 1 man/colsums.Rd | 7 man/dista.Rd | 13 man/ompr.Rd | 2 man/score.glms.Rd | 22 man/weib.reg.Rd | 1 src/Rank.cpp | 6 src/col_row_utilities.cpp | 86 +- src/dists.cpp | 4 src/init.c | 8 23 files changed, 773 insertions(+), 742 deletions(-)
Title: Adrian Dusa's Miscellaneous
Description: Contains functions used across packages 'declared', 'DDIwR', 'mixed', 'QCA'
and 'venn'. Interprets and translates, factorizes and negates SOP - Sum of Products
expressions, for both binary and multi-value crisp sets, and extracts information
(set names, set values) from those expressions. Other functions perform various
other checks if possibly numeric (even if all numbers reside in a character vector)
and coerce to numeric, or check if the numbers are whole. It also offers, among
many others, a highly flexible recoding routine.
Author: Adrian Dusa [aut, cre, cph] (<https://orcid.org/0000-0002-3525-9253>)
Maintainer: Adrian Dusa <dusa.adrian@unibuc.ro>
Diff between admisc versions 0.20 dated 2021-11-14 and 0.21 dated 2021-12-03
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ R/negate.R | 2 +- build/partial.rdb |binary inst/ChangeLog | 4 ++++ man/admisc.package.Rd | 4 ++-- src/admisc.c | 1 - 7 files changed, 17 insertions(+), 14 deletions(-)
Title: Data and Variable Transformation Functions
Description: Collection of miscellaneous utility functions, supporting data
transformation tasks like recoding, dichotomizing or grouping variables,
setting and replacing missing values. The data transformation functions
also support labelled data, and all integrate seamlessly into a
'tidyverse'-workflow.
Author: Daniel Lüdecke [aut, cre] (<https://orcid.org/0000-0002-8895-3206>),
Iago Giné-Vázquez [ctb],
Alexander Bartel [ctb] (<https://orcid.org/0000-0002-1280-6138>)
Maintainer: Daniel Lüdecke <d.luedecke@uke.de>
Diff between sjmisc versions 2.8.7 dated 2021-05-12 and 2.8.9 dated 2021-12-03
sjmisc-2.8.7/sjmisc/R/format.R |only sjmisc-2.8.9/sjmisc/DESCRIPTION | 12 sjmisc-2.8.9/sjmisc/MD5 | 109 +- sjmisc-2.8.9/sjmisc/NAMESPACE | 7 sjmisc-2.8.9/sjmisc/NEWS.md | 14 sjmisc-2.8.9/sjmisc/R/S3-methods.R | 134 ++ sjmisc-2.8.9/sjmisc/R/frq.R | 3 sjmisc-2.8.9/sjmisc/R/rec.R | 74 + sjmisc-2.8.9/sjmisc/R/remove_vars.R | 2 sjmisc-2.8.9/sjmisc/build/partial.rdb |binary sjmisc-2.8.9/sjmisc/build/vignette.rds |binary sjmisc-2.8.9/sjmisc/inst/doc/design_philosophy.html | 4 sjmisc-2.8.9/sjmisc/inst/doc/exploringdatasets.html | 124 +- sjmisc-2.8.9/sjmisc/inst/doc/recodingvariables.html | 587 +++++------- sjmisc-2.8.9/sjmisc/man/add_rows.Rd | 114 +- sjmisc-2.8.9/sjmisc/man/add_variables.Rd | 116 +- sjmisc-2.8.9/sjmisc/man/all_na.Rd | 54 - sjmisc-2.8.9/sjmisc/man/big_mark.Rd | 100 +- sjmisc-2.8.9/sjmisc/man/count_na.Rd | 114 +- sjmisc-2.8.9/sjmisc/man/de_mean.Rd | 130 +- sjmisc-2.8.9/sjmisc/man/dicho.Rd | 298 +++--- sjmisc-2.8.9/sjmisc/man/flat_table.Rd | 158 +-- sjmisc-2.8.9/sjmisc/man/frq.Rd | 395 ++++---- sjmisc-2.8.9/sjmisc/man/group_str.Rd | 152 +-- sjmisc-2.8.9/sjmisc/man/group_var.Rd | 346 +++---- sjmisc-2.8.9/sjmisc/man/has_na.Rd | 158 +-- sjmisc-2.8.9/sjmisc/man/is_crossed.Rd | 172 +-- sjmisc-2.8.9/sjmisc/man/is_empty.Rd | 132 +- sjmisc-2.8.9/sjmisc/man/move_columns.Rd | 148 +-- sjmisc-2.8.9/sjmisc/man/numeric_to_factor.Rd | 68 - sjmisc-2.8.9/sjmisc/man/rec.Rd | 460 ++++----- sjmisc-2.8.9/sjmisc/man/recode_to.Rd | 210 ++-- sjmisc-2.8.9/sjmisc/man/reexports.Rd | 6 sjmisc-2.8.9/sjmisc/man/ref_lvl.Rd | 158 +-- sjmisc-2.8.9/sjmisc/man/remove_var.Rd | 64 - sjmisc-2.8.9/sjmisc/man/replace_na.Rd | 212 ++-- sjmisc-2.8.9/sjmisc/man/reshape_longer.Rd | 224 ++-- sjmisc-2.8.9/sjmisc/man/rotate_df.Rd | 114 +- sjmisc-2.8.9/sjmisc/man/row_count.Rd | 136 +- sjmisc-2.8.9/sjmisc/man/row_sums.Rd | 214 ++-- sjmisc-2.8.9/sjmisc/man/set_na_if.Rd | 116 +- sjmisc-2.8.9/sjmisc/man/split_var.Rd | 308 +++--- sjmisc-2.8.9/sjmisc/man/spread_coef.Rd | 216 ++-- sjmisc-2.8.9/sjmisc/man/std.Rd | 298 +++--- sjmisc-2.8.9/sjmisc/man/str_contains.Rd | 162 +-- sjmisc-2.8.9/sjmisc/man/str_find.Rd | 172 +-- sjmisc-2.8.9/sjmisc/man/str_start.Rd | 128 +- sjmisc-2.8.9/sjmisc/man/tidy_values.Rd | 78 - sjmisc-2.8.9/sjmisc/man/to_dummy.Rd | 118 +- sjmisc-2.8.9/sjmisc/man/to_value.Rd | 114 +- sjmisc-2.8.9/sjmisc/man/var_rename.Rd | 108 +- sjmisc-2.8.9/sjmisc/man/var_type.Rd | 88 - sjmisc-2.8.9/sjmisc/man/word_wrap.Rd | 64 - sjmisc-2.8.9/sjmisc/man/zap_inf.Rd | 96 - sjmisc-2.8.9/sjmisc/tests/testthat/test-merge_imputations.R | 2 sjmisc-2.8.9/sjmisc/tests/testthat/test-rec.R | 2 56 files changed, 3894 insertions(+), 3699 deletions(-)
Title: Methods for Statistical Disclosure Control in Tabular Data
Description: Methods for statistical disclosure control in
tabular data such as primary and secondary cell suppression as described for example
in Hundepol et al. (2012) <doi:10.1002/9781118348239> are covered in this package.
Author: Bernhard Meindl
Maintainer: Bernhard Meindl <bernhard.meindl@gmail.com>
Diff between sdcTable versions 0.32.1 dated 2021-09-30 and 0.32.2 dated 2021-12-03
sdcTable-0.32.1/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_c97b033f24ad7e223cc0cc29e69a737f.RData |only sdcTable-0.32.1/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_c97b033f24ad7e223cc0cc29e69a737f.rdb |only sdcTable-0.32.1/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_c97b033f24ad7e223cc0cc29e69a737f.rdx |only sdcTable-0.32.2/sdcTable/DESCRIPTION | 10 +-- sdcTable-0.32.2/sdcTable/MD5 | 30 ++++----- sdcTable-0.32.2/sdcTable/R/change_cellstatus.R | 2 sdcTable-0.32.2/sdcTable/R/methods_class_sdcProblem.r | 23 ++++--- sdcTable-0.32.2/sdcTable/R/primarySuppression.R | 7 +- sdcTable-0.32.2/sdcTable/R/protect_linked_tables.R | 10 +-- sdcTable-0.32.2/sdcTable/R/utils.R | 31 +++------- sdcTable-0.32.2/sdcTable/R/utils_simpleheuristic.R | 10 ++- sdcTable-0.32.2/sdcTable/build/vignette.rds |binary sdcTable-0.32.2/sdcTable/inst/doc/sdcTable.html | 15 +--- sdcTable-0.32.2/sdcTable/man/change_cellstatus.Rd | 2 sdcTable-0.32.2/sdcTable/man/primarySuppression.Rd | 7 +- sdcTable-0.32.2/sdcTable/man/protect_linked_tables.Rd | 10 +-- sdcTable-0.32.2/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_98c4c32852884932d756c9b1fe94ca7b.RData |only sdcTable-0.32.2/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_98c4c32852884932d756c9b1fe94ca7b.rdb |only sdcTable-0.32.2/sdcTable/vignettes/sdcTable_cache/html/unnamed-chunk-32_98c4c32852884932d756c9b1fe94ca7b.rdx |only 19 files changed, 75 insertions(+), 82 deletions(-)
Title: General Package for Meta-Analysis
Description: User-friendly general package providing standard methods for meta-analysis and supporting Schwarzer, Carpenter, and Rücker <DOI:10.1007/978-3-319-21416-0>, "Meta-Analysis with R" (2015):
- fixed effect and random effects meta-analysis;
- several plots (forest, funnel, Galbraith / radial, L'Abbe, Baujat, bubble);
- statistical tests and trim-and-fill method to evaluate bias in meta-analysis;
- import data from 'RevMan 5';
- prediction interval, Hartung-Knapp method for random effects model;
- cumulative meta-analysis and leave-one-out meta-analysis;
- meta-regression;
- generalised linear mixed models;
- produce forest plot summarising several (subgroup) meta-analyses.
Author: Guido Schwarzer [cre, aut] (<https://orcid.org/0000-0001-6214-9087>)
Maintainer: Guido Schwarzer <sc@imbi.uni-freiburg.de>
Diff between meta versions 5.1-0 dated 2021-11-17 and 5.1-1 dated 2021-12-03
DESCRIPTION | 8 +- MD5 | 20 ++--- NEWS.md | 33 ++++++++ R/ci.R | 7 - R/meta-ci.R | 183 ++++++++++++++++++++++++++++++++++++------------- R/meta-internal.R | 49 +++++++++++++ R/metacont.R | 38 ++++++---- R/metamean.R | 4 - R/metaprop.R | 64 ++++++----------- R/print.meta.R | 42 ----------- R/print.summary.meta.R | 51 ++++++++++++- 11 files changed, 333 insertions(+), 166 deletions(-)
Title: Experimental Statistics and Graphics for Agricultural Sciences
Description: Performs the analysis of completely randomized experimental designs (CRD), randomized blocks (RBD) and Latin square (LSD), experiments in double and triple factorial scheme (in CRD and RBD), experiments in subdivided plot scheme (in CRD and RBD), subdivided and joint analysis of experiments in CRD and RBD, linear regression analysis, test for two samples. The package performs analysis of variance, ANOVA assumptions and multiple comparison test of means or regression, according to Pimentel-Gomes (2009, ISBN: 978-85-7133-055-9), nonparametric test (Conover, 1999, ISBN: 0471160687), test for two samples, joint analysis of experiments according to Ferreira (2018, ISBN: 978-85-7269-566-4), ANOVA of aligned ranks (Wobbrock, J.O., Findlater, L., Gergle, D., Higgins, JJ (2011), <doi:10.1145/1978942.1978963>) and generalized linear model (glm) for binomial and Poisson family in CRD and RBD (Carvalho, FJ (2019), <doi:10.14393/ufu.te.2019.1244>). It can also be used to obtain descriptive measures and graphics, in addition to correlations and creative graphics used in agricultural sciences (Agronomy, Zootechnics, Food Science and related areas).
Author: Gabriel Danilo Shimizu [aut, cre]
(<https://orcid.org/0000-0001-8524-508X>),
Rodrigo Yudi Palhaci Marubayashi [aut, ctb]
(<https://orcid.org/0000-0003-2778-8654>),
Leandro Simoes Azeredo Goncalves [aut, ctb]
(<https://orcid.org/0000-0001-9700-9375>)
Maintainer: Gabriel Danilo Shimizu <shimizu@uel.br>
Diff between AgroR versions 1.2.4 dated 2021-11-30 and 1.2.5 dated 2021-12-03
AgroR-1.2.4/AgroR/R/FAT2DBCart_function.R |only AgroR-1.2.4/AgroR/R/FAT2DICart_function.R |only AgroR-1.2.4/AgroR/man/FAT2DBC.art.Rd |only AgroR-1.2.4/AgroR/man/FAT2DIC.art.Rd |only AgroR-1.2.5/AgroR/DESCRIPTION | 14 AgroR-1.2.5/AgroR/MD5 | 130 ++++---- AgroR-1.2.5/AgroR/NAMESPACE | 11 AgroR-1.2.5/AgroR/NEWS.md | 8 AgroR-1.2.5/AgroR/R/DBCglm_function.R | 26 - AgroR-1.2.5/AgroR/R/DICglm_function.R | 29 + AgroR-1.2.5/AgroR/R/FAT2DBC_function.R | 178 ++++++++--- AgroR-1.2.5/AgroR/R/FAT2DBCad_function.R | 58 ++- AgroR-1.2.5/AgroR/R/FAT2DIC_function.R | 123 ++++++-- AgroR-1.2.5/AgroR/R/FAT2DICad_function.R | 60 ++- AgroR-1.2.5/AgroR/R/FAT3DBC_function.R | 334 +++++++++++++++------- AgroR-1.2.5/AgroR/R/FAT3DIC_function.R | 287 ++++++++++++++----- AgroR-1.2.5/AgroR/R/PSUBDBC_function.R | 143 +++++++-- AgroR-1.2.5/AgroR/R/PSUBDIC_function.R | 160 ++++++++-- AgroR-1.2.5/AgroR/R/PSUBFAT2DBC_function.R |only AgroR-1.2.5/AgroR/R/PSUBSUB_function.R | 361 +++++++++++++++++------- AgroR-1.2.5/AgroR/R/auxiliar_function.R | 65 ++++ AgroR-1.2.5/AgroR/R/bean_dataset.R | 2 AgroR-1.2.5/AgroR/R/conjdbc_function.R | 51 +-- AgroR-1.2.5/AgroR/R/conjdic_function.R | 44 +- AgroR-1.2.5/AgroR/R/coric_function.R | 2 AgroR-1.2.5/AgroR/R/corn_dataset.R | 2 AgroR-1.2.5/AgroR/R/correlation_function.R | 24 + AgroR-1.2.5/AgroR/R/covercrops_dataset.R | 2 AgroR-1.2.5/AgroR/R/dbc_function.R | 74 ++-- AgroR-1.2.5/AgroR/R/dbct_function.R | 32 +- AgroR-1.2.5/AgroR/R/dic_function.R | 351 ++--------------------- AgroR-1.2.5/AgroR/R/dict_function.R | 26 + AgroR-1.2.5/AgroR/R/dispvar_function.R | 1 AgroR-1.2.5/AgroR/R/dql_function.R | 48 +-- AgroR-1.2.5/AgroR/R/dqlt_function.R | 38 +- AgroR-1.2.5/AgroR/R/orchard_dataset.R | 2 AgroR-1.2.5/AgroR/R/pepper_dataset.R | 2 AgroR-1.2.5/AgroR/R/plotcor_function.R | 4 AgroR-1.2.5/AgroR/R/polynomial2_function.R | 53 +++ AgroR-1.2.5/AgroR/R/polynomial2color_function.R | 55 +++ AgroR-1.2.5/AgroR/R/polynomial_function.R | 72 +++- AgroR-1.2.5/AgroR/R/test_two_function.R | 13 AgroR-1.2.5/AgroR/man/DBC.Rd | 24 - AgroR-1.2.5/AgroR/man/DBC.glm.Rd | 3 AgroR-1.2.5/AgroR/man/DBCT.Rd | 19 - AgroR-1.2.5/AgroR/man/DIC.Rd | 28 + AgroR-1.2.5/AgroR/man/DIC.glm.Rd | 5 AgroR-1.2.5/AgroR/man/DICT.Rd | 7 AgroR-1.2.5/AgroR/man/DQL.Rd | 16 - AgroR-1.2.5/AgroR/man/DQLT.Rd | 9 AgroR-1.2.5/AgroR/man/FAT2DBC.Rd | 23 - AgroR-1.2.5/AgroR/man/FAT2DBC.ad.Rd | 11 AgroR-1.2.5/AgroR/man/FAT2DIC.Rd | 13 AgroR-1.2.5/AgroR/man/FAT2DIC.ad.Rd | 12 AgroR-1.2.5/AgroR/man/FAT3DBC.Rd | 27 - AgroR-1.2.5/AgroR/man/FAT3DIC.Rd | 31 +- AgroR-1.2.5/AgroR/man/PSUBDBC.Rd | 9 AgroR-1.2.5/AgroR/man/PSUBDIC.Rd | 13 AgroR-1.2.5/AgroR/man/PSUBFAT2DBC.Rd |only AgroR-1.2.5/AgroR/man/bean.Rd | 2 AgroR-1.2.5/AgroR/man/cor_ic.Rd | 2 AgroR-1.2.5/AgroR/man/corn.Rd | 2 AgroR-1.2.5/AgroR/man/covercrops.Rd | 2 AgroR-1.2.5/AgroR/man/orchard.Rd | 2 AgroR-1.2.5/AgroR/man/pepper.Rd | 2 AgroR-1.2.5/AgroR/man/polynomial.Rd | 8 AgroR-1.2.5/AgroR/man/polynomial2.Rd | 8 AgroR-1.2.5/AgroR/man/polynomial2_color.Rd | 8 AgroR-1.2.5/AgroR/man/test_two.Rd | 8 69 files changed, 2029 insertions(+), 1150 deletions(-)
Title: Make Static HTML Documentation for a Package
Description: Generate an attractive and useful website from a source
package. 'pkgdown' converts your documentation, vignettes, 'README',
and more to 'HTML' making it easy to share information about your
package online.
Author: Hadley Wickham [aut, cre] (<https://orcid.org/0000-0003-4757-117X>),
Jay Hesselberth [aut] (<https://orcid.org/0000-0002-6299-179X>),
Maëlle Salmon [aut] (<https://orcid.org/0000-0002-2815-0399>),
RStudio [cph, fnd]
Maintainer: Hadley Wickham <hadley@rstudio.com>
Diff between pkgdown versions 2.0.0 dated 2021-11-30 and 2.0.1 dated 2021-12-03
DESCRIPTION | 6 +- MD5 | 49 ++++++++++++------------ NEWS.md | 11 +++++ R/build-reference-index.R | 9 ++-- R/build-reference.R | 11 +++-- R/markdown.R | 6 ++ R/rd-data.R | 4 + R/topics.R | 4 - R/utils.R | 4 - build/pkgdown.pdf |binary inst/BS3/templates/content-reference-topic.html | 4 + man/build_home.Rd | 2 man/build_site.Rd | 2 tests/testthat/_snaps/build-footer.md | 15 ++----- tests/testthat/_snaps/build-reference-index.md | 12 +++++ tests/testthat/_snaps/render.md | 2 tests/testthat/assets/reference/DESCRIPTION | 2 tests/testthat/assets/reference/R/funs.R | 4 + tests/testthat/assets/reference/man/e.Rd |only tests/testthat/test-build-articles.R | 7 +++ tests/testthat/test-build-footer.R | 5 +- tests/testthat/test-build-reference-index.R | 12 ++--- tests/testthat/test-build-reference.R | 37 ++++++++++++++++++ tests/testthat/test-rd-data.R | 4 + tests/testthat/test-render.R | 1 tests/testthat/test-tweak-reference.R | 1 26 files changed, 151 insertions(+), 63 deletions(-)
Title: Penalized Spline Estimation for GPLSIM
Description: We provides functions that employ penalized spline (P-spline) to estimate generalized
partially linear single index models (GPLSIM), which extend the generalized linear
models to include nonlinear effect for some predictors. Please see Y. (2017) at
<doi:10.1007/s11222-016-9639-0> and Y., and R. (2002) at <doi:10.1198/016214502388618861> for more details.
Author: Tianhai Zu [aut, trl, cre],
Yan Yu [aut]
Maintainer: Tianhai Zu <zuti@mail.uc.edu>
Diff between gplsim versions 0.9.0 dated 2021-12-02 and 0.9.1 dated 2021-12-03
gplsim-0.9.0/gplsim/man/plot.si.Rd |only gplsim-0.9.1/gplsim/DESCRIPTION | 6 +++--- gplsim-0.9.1/gplsim/MD5 | 16 ++++++++-------- gplsim-0.9.1/gplsim/NAMESPACE | 7 ++++--- gplsim-0.9.1/gplsim/NEWS.md | 2 +- gplsim-0.9.1/gplsim/R/gplsim.r | 30 +++++++++++++++++------------- gplsim-0.9.1/gplsim/README.md | 8 +++----- gplsim-0.9.1/gplsim/man/add_sim_bound.Rd | 8 +++++++- gplsim-0.9.1/gplsim/man/gplsim.Rd | 2 +- gplsim-0.9.1/gplsim/man/plot_si.Rd |only 10 files changed, 44 insertions(+), 35 deletions(-)
Title: Earth Observation Data Cubes from Satellite Image Collections
Description: Processing collections of Earth observation images as on-demand multispectral, multitemporal raster data cubes. Users
define cubes by spatiotemporal extent, resolution, and spatial reference system and let 'gdalcubes' automatically apply cropping, reprojection, and
resampling using the 'Geospatial Data Abstraction Library' ('GDAL'). Implemented functions on data cubes include reduction over space and time,
applying arithmetic expressions on pixel band values, moving window aggregates over time, filtering by space, time, bands, and predicates on pixel values,
exporting data cubes as 'netCDF' or 'GeoTIFF' files, and plotting. The package implements lazy evaluation and
multithreading. All computational parts are implemented in C++, linking to the 'GDAL', 'netCDF', 'CURL', and 'SQLite' libraries.
See Appel and Pebesma (2019) <doi:10.3390/data4030092> for further details.
Author: Marius Appel [aut, cre] (<https://orcid.org/0000-0001-5281-3896>),
Edzer Pebesma [ctb] (<https://orcid.org/0000-0001-8049-7069>),
Roger Bivand [ctb],
Jeroen Ooms [ctb] (<https://orcid.org/0000-0002-4035-0289>),
Lewis Van Winkle [cph],
Ole Christian Eidheim [cph],
Howard Hinnant [cph],
Adrian Colomitchi [cph],
Florian Dang [cph],
Paul Thompson [cph],
Tomasz Kamiński [cph],
Dropbox, Inc. [cph]
Maintainer: Marius Appel <marius.appel@uni-muenster.de>
Diff between gdalcubes versions 0.5.0 dated 2021-10-28 and 0.5.1 dated 2021-12-03
DESCRIPTION | 10 +++++----- MD5 | 36 ++++++++++++++++++------------------ NEWS.md | 5 +++++ R/aggregate_time.R | 2 +- R/crop.R | 2 +- R/cube.R | 4 ++-- R/stac.R | 17 +++++++++-------- build/vignette.rds |binary configure | 18 +++++++++--------- configure.ac | 2 +- inst/doc/MODIS.R | 4 ++-- inst/doc/MODIS.Rmd | 9 ++++----- inst/doc/MODIS.html | 32 ++++++++++++++++---------------- man/aggregate_time.Rd | 2 +- man/crop.Rd | 2 +- man/stack_cube.Rd | 9 ++------- src/gdalcubes.cpp | 2 +- src/gdalcubes/src/config.cpp | 1 + vignettes/MODIS.Rmd | 9 ++++----- 19 files changed, 83 insertions(+), 83 deletions(-)
Title: Create Useful Summaries of the Portal Data
Description: Download and generate summaries for the rodent,
plant, ant, and weather data from the Portal Project. Portal is a
long-term (and ongoing) experimental monitoring site in the Chihuahua
desert. The raw data files can be found at
<https://github.com/weecology/portaldata>.
Author: Glenda M. Yenni [aut, cre] (<https://orcid.org/0000-0001-6969-1848>),
Hao Ye [aut] (<https://orcid.org/0000-0002-8630-1458>),
Erica M. Christensen [aut] (<https://orcid.org/0000-0002-5635-2502>),
Juniper L. Simonis [aut] (<https://orcid.org/0000-0001-9798-0460>),
Ellen K. Bledsoe [aut] (<https://orcid.org/0000-0002-3629-7235>),
Renata M. Diaz [aut] (<https://orcid.org/0000-0003-0803-4734>),
Shawn D. Taylor [aut] (<https://orcid.org/0000-0002-6178-6903>),
Ethan P, White [aut] (<https://orcid.org/0000-0001-6728-7745>),
S.K. Morgan Ernest [aut] (<https://orcid.org/0000-0002-6026-8530>),
Weecology [cph]
Maintainer: Glenda M. Yenni <glenda@weecology.org>
Diff between portalr versions 0.3.8 dated 2021-05-23 and 0.3.9 dated 2021-12-03
portalr-0.3.8/portalr/man/get_data_versions.Rd |only portalr-0.3.9/portalr/DESCRIPTION | 13 portalr-0.3.9/portalr/MD5 | 27 portalr-0.3.9/portalr/NAMESPACE | 4 portalr-0.3.9/portalr/R/Weather.R | 8 portalr-0.3.9/portalr/R/download_data.R | 338 +++------- portalr-0.3.9/portalr/R/portalr-package.R | 1 portalr-0.3.9/portalr/R/summarize_plants.R | 1 portalr-0.3.9/portalr/R/zzz.R | 2 portalr-0.3.9/portalr/inst/doc/portal_researcher_examples.html | 30 portalr-0.3.9/portalr/inst/doc/rodent-abundance-demo.html | 67 - portalr-0.3.9/portalr/man/check_for_newer_data.Rd | 5 portalr-0.3.9/portalr/man/download_observations.Rd | 19 portalr-0.3.9/portalr/tests/testthat/test-01-data-retrieval.R | 12 portalr-0.3.9/portalr/tests/testthat/test-99-regression.R | 16 15 files changed, 225 insertions(+), 318 deletions(-)
Title: Tools for Gaussian Process Modeling in Uncertainty
Quantification
Description: Gaussian processes (GPs) have been widely used to model spatial data, spatio-temporal data, and computer experiments in diverse areas of statistics including spatial statistics, spatio-temporal statistics, uncertainty quantification, and machine learning. This package creates basic tools for fitting and prediction based on GPs with spatial data, spatio-temporal data, and computer experiments. Key characteristics for this GP tool include: (1) the comprehensive implementation of various covariance functions including the Matérn family and the Confluent Hypergeometric family with isotropic form, tensor form, and automatic relevance determination form, where the isotropic form is widely used in spatial statistics, the tensor form is widely used in design and analysis of computer experiments and uncertainty quantification, and the automatic relevance determination form is widely used in machine learning; (2) implementations via Markov chain Monte Carlo (MCMC) algorithms and optimization algorithms for GP models with all the implemented covariance functions. The methods for fitting and prediction are mainly implemented in a Bayesian framework; (3) model evaluation via Fisher information and predictive metrics such as predictive scores; (4) built-in functionality for simulating GPs with all the implemented covariance functions; (5) unified implementation to allow easy specification of various GPs.
Author: Pulong Ma [aut, cre]
Maintainer: Pulong Ma <mpulong@gmail.com>
Diff between GPBayes versions 0.1.0-2.1 dated 2021-10-08 and 0.1.0-3 dated 2021-12-03
DESCRIPTION | 10 +++++----- MD5 | 6 ++++-- R/startup.R |only configure | 18 +++++++++--------- inst/NEWS.Rd |only 5 files changed, 18 insertions(+), 16 deletions(-)
Title: Multiple Geometric Shape Point Layer for 'ggplot2'
Description: To create the multiple polygonal point layer for easily discernible shapes,
we developed the package, it is like the 'geom_point' of 'ggplot2'.
It can be used to draw the scatter plot.
Author: Shuangbin Xu [aut, cre] (<https://orcid.org/0000-0003-3513-5362>)
Maintainer: Shuangbin Xu <xshuangbin@163.com>
Diff between ggstar versions 1.0.2 dated 2021-04-07 and 1.0.3 dated 2021-12-03
DESCRIPTION | 9 ++++----- MD5 | 24 ++++++++++++------------ NEWS.md | 13 +++++++++++++ R/geom-star.R | 9 ++++++++- R/scale-starshape.R | 2 +- build/vignette.rds |binary inst/doc/ggstar.Rmd | 2 +- inst/doc/ggstar.html | 39 ++++++++++++++++++++------------------- man/geom_star.Rd | 2 ++ man/scale_manual.Rd | 9 ++++++--- man/scale_starshape.Rd | 9 ++++++--- man/scale_starshape_identity.Rd | 18 ++++++++++++------ vignettes/ggstar.Rmd | 2 +- 13 files changed, 86 insertions(+), 52 deletions(-)