Title: Imputation Procedures and Quality Tests for Fuzzy Data
Description: Special procedures for the imputation of missing fuzzy numbers are still underdeveloped. The goal of the package is to provide the new d-imputation method (DIMP for short, Romaniuk, M. and Grzegorzewski, P. (2023) "Fuzzy Data Imputation with DIMP and FGAIN" RB/23/2023) and covert some classical ones applied in R packages ('missForest','miceRanger','knn') for use with fuzzy datasets. Additionally, specially tailored benchmarking tests are provided to check and compare these imputation procedures with fuzzy datasets.
Author: Maciej Romaniuk [cre, aut]
Maintainer: Maciej Romaniuk <mroman@ibspan.waw.pl>
Diff between FuzzyImputationTest versions 0.3.6 dated 2024-12-11 and 0.3.8 dated 2024-12-19
FuzzyImputationTest-0.3.6/FuzzyImputationTest/R/distanceNames.R |only FuzzyImputationTest-0.3.6/FuzzyImputationTest/R/errorTypes.R |only FuzzyImputationTest-0.3.6/FuzzyImputationTest/R/measuresTypes.R |only FuzzyImputationTest-0.3.6/FuzzyImputationTest/R/setsNames.R |only FuzzyImputationTest-0.3.6/FuzzyImputationTest/R/testsNames.R |only FuzzyImputationTest-0.3.6/FuzzyImputationTest/man/distanceNames.Rd |only FuzzyImputationTest-0.3.6/FuzzyImputationTest/man/errorTypes.Rd |only FuzzyImputationTest-0.3.6/FuzzyImputationTest/man/measuresTypes.Rd |only FuzzyImputationTest-0.3.6/FuzzyImputationTest/man/setsNames.Rd |only FuzzyImputationTest-0.3.6/FuzzyImputationTest/man/testsNames.Rd |only FuzzyImputationTest-0.3.8/FuzzyImputationTest/DESCRIPTION | 6 - FuzzyImputationTest-0.3.8/FuzzyImputationTest/MD5 | 32 ++++------ FuzzyImputationTest-0.3.8/FuzzyImputationTest/NAMESPACE | 7 -- FuzzyImputationTest-0.3.8/FuzzyImputationTest/R/ImputationTests.R | 25 +++++-- FuzzyImputationTest-0.3.8/FuzzyImputationTest/R/MethodsComparison.R | 17 +++-- FuzzyImputationTest-0.3.8/FuzzyImputationTest/R/summary.impTest.R |only FuzzyImputationTest-0.3.8/FuzzyImputationTest/R/summary.metComp.R |only FuzzyImputationTest-0.3.8/FuzzyImputationTest/R/utils.R | 22 ++++++ FuzzyImputationTest-0.3.8/FuzzyImputationTest/man/ImputationTests.Rd | 10 ++- FuzzyImputationTest-0.3.8/FuzzyImputationTest/man/MethodsComparison.Rd | 9 ++ FuzzyImputationTest-0.3.8/FuzzyImputationTest/man/summary.impTest.Rd |only FuzzyImputationTest-0.3.8/FuzzyImputationTest/man/summary.metComp.Rd |only FuzzyImputationTest-0.3.8/FuzzyImputationTest/tests/testthat/_snaps/ImputationTests.md | 8 ++ FuzzyImputationTest-0.3.8/FuzzyImputationTest/tests/testthat/_snaps/MethodsComparison.md | 6 + 24 files changed, 97 insertions(+), 45 deletions(-)
More information about FuzzyImputationTest at CRAN
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Title: Creating Demographic Table
Description: Functions for creating demographic
table of simple summary statistics and
comparison(s) over one or more groups.
Returned value is printed via package
'flextable'.
Author: Tingting Zhan [aut, cre, cph]
Maintainer: Tingting Zhan <tingtingzhan@gmail.com>
Diff between DemographicTable versions 0.1.9 dated 2024-09-17 and 0.1.10 dated 2024-12-19
DemographicTable-0.1.10/DemographicTable/DESCRIPTION | 34 - DemographicTable-0.1.10/DemographicTable/MD5 | 37 - DemographicTable-0.1.10/DemographicTable/NAMESPACE | 36 - DemographicTable-0.1.10/DemographicTable/NEWS.md | 4 DemographicTable-0.1.10/DemographicTable/R/0PACKAGE.R | 2 DemographicTable-0.1.10/DemographicTable/R/DemographicTable.R | 312 +++------- DemographicTable-0.1.10/DemographicTable/R/as_flextable.R |only DemographicTable-0.1.10/DemographicTable/R/c.R |only DemographicTable-0.1.10/DemographicTable/R/pval_shapiro.R | 7 DemographicTable-0.1.10/DemographicTable/R/rmd_.DemographicTable.R | 31 DemographicTable-0.1.10/DemographicTable/R/sumstat.R |only DemographicTable-0.1.10/DemographicTable/inst/extR/toCRAN.R | 8 DemographicTable-0.1.10/DemographicTable/inst/xtable.R |only DemographicTable-0.1.10/DemographicTable/man/DemographicTable-package.Rd | 2 DemographicTable-0.1.10/DemographicTable/man/DemographicTable.Rd | 76 -- DemographicTable-0.1.10/DemographicTable/man/as_flextable.DemographicTable.Rd | 11 DemographicTable-0.1.10/DemographicTable/man/c.DemographicTable.Rd |only DemographicTable-0.1.10/DemographicTable/man/pval_shapiro.Rd | 2 DemographicTable-0.1.10/DemographicTable/man/rmd_.DemographicTable.Rd | 9 DemographicTable-0.1.10/DemographicTable/man/sumstat.Rd |only DemographicTable-0.1.9/DemographicTable/R/Sprintf.DemographicTable.R |only DemographicTable-0.1.9/DemographicTable/R/summaryText.R |only DemographicTable-0.1.9/DemographicTable/man/Sprintf.DemographicTable.Rd |only DemographicTable-0.1.9/DemographicTable/man/summaryText.Rd |only DemographicTable-0.1.9/DemographicTable/man/xtable.DemographicTable.Rd |only 25 files changed, 259 insertions(+), 312 deletions(-)
More information about DemographicTable at CRAN
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Title: Robust Multi-Model Subset Selection
Description: Efficient algorithms for generating ensembles of robust, sparse and diverse models via robust
multi-model subset selection (RMSS). The robust ensembles are generated by minimizing the sum of
the least trimmed square loss of the models in the ensembles under constraints for the size of
the models and the sharing of the predictors. Tuning parameters for the robustness, sparsity and
diversity of the robust ensemble are selected by cross-validation.
Author: Anthony Christidis [aut, cre],
Gabriela Cohen-Freue [aut]
Maintainer: Anthony Christidis <anthony.christidis@stat.ubc.ca>
Diff between RMSS versions 1.1.1 dated 2023-09-13 and 1.1.2 dated 2024-12-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- NEWS | 5 ++++- R/cv.RMSS.R | 11 +++++++---- README.md | 4 ++-- 5 files changed, 21 insertions(+), 15 deletions(-)
Title: Client for the 'KoboToolbox' API
Description: Suite of utilities for accessing and manipulating
data from the 'KoboToolbox' API. 'KoboToolbox' is a robust
platform designed for field data collection in various disciplines.
This package aims to simplify the process of fetching and handling
data from the API. Detailed documentation for the 'KoboToolbox' API
can be found at <https://support.kobotoolbox.org/api.html>.
Author: Ahmadou Dicko [aut, cre, cph],
Hisham Galal [ctb]
Maintainer: Ahmadou Dicko <mail@ahmadoudicko.com>
Diff between robotoolbox versions 1.3.2 dated 2023-06-09 and 1.4 dated 2024-12-19
DESCRIPTION | 13 MD5 | 108 +-- NAMESPACE | 14 R/kobo_asset.R | 4 R/kobo_audit.R | 54 + R/kobo_data.R | 143 ++++- R/kobo_file.R |only R/kobo_form.R | 7 R/kobo_setup.R | 3 R/utils.R | 218 ++++++- README.md | 45 + build/vignette.rds |binary data/asset_audit.rda |binary data/asset_ml.rda |binary data/asset_rg.rda |binary data/asset_sm_label.rda |binary data/asset_spatial.rda |binary data/data_audit.rda |binary data/data_ml_ar.rda |binary data/data_ml_default.rda |binary data/data_ml_en.rda |binary data/data_ml_fr.rda |binary data/data_ml_vlabel.rda |binary data/data_rg.rda |binary data/data_sm.rda |binary data/data_sm_label.rda |binary data/data_spatial.rda |binary inst/doc/audit-data.R | 28 inst/doc/audit-data.Rmd | 20 inst/doc/audit-data.html | 63 +- inst/doc/intro.R | 126 ++-- inst/doc/intro.Rmd | 22 inst/doc/intro.html | 95 +-- inst/doc/multilang-forms.R | 62 +- inst/doc/multilang-forms.Rmd | 6 inst/doc/multilang-forms.html | 106 +-- inst/doc/repeat-group-data.R | 36 - inst/doc/repeat-group-data.Rmd | 51 + inst/doc/repeat-group-data.html | 261 ++++++--- inst/doc/spatial-data.R | 34 - inst/doc/spatial-data.Rmd | 31 - inst/doc/spatial-data.html | 816 +++++++++++++++++++++-------- man/kobo_asset_file_list.Rd |only man/kobo_attachment_download.Rd |only man/kobo_audit.Rd | 5 man/kobo_data.Rd | 15 tests/testthat/_snaps/kobo_asset.md | 2 tests/testthat/_snaps/kobo_settings.md | 2 tests/testthat/test-kobo_asset_file_list.R |only tests/testthat/test-kobo_audit.R | 14 tests/testthat/test-kobo_data.R | 66 ++ tests/testthat/test-kobo_form.R | 18 vignettes/audit-data.Rmd | 20 vignettes/intro.Rmd | 22 vignettes/multilang-forms.Rmd | 6 vignettes/repeat-group-data.Rmd | 51 + vignettes/spatial-data.Rmd | 31 - 57 files changed, 1850 insertions(+), 768 deletions(-)
Title: Collect And Investigate Street Views For Urban Science
Description: A collection of functions to search and download street view imagery
('Mapilary' <https://www.mapillary.com/developer/api-documentation>) and
to extract, quantify, and visualize visual features. Moreover, there are
functions provided to generate Qualtrics survey in TXT format using
the collection of street views for various research purposes.
Author: Xiaohao Yang [aut, cre, cph],
Derek Van Berkel [aut],
Mark Lindquist [aut]
Maintainer: Xiaohao Yang <xiaohaoy@umich.edu>
Diff between streetscape versions 1.0.3 dated 2024-08-31 and 1.0.4 dated 2024-12-19
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Viewscape Analysis
Description: A collection of functions to make R a more effective viewscape analysis
tool for calculating viewscape metrics based on computing the viewable area for
given a point/multiple viewpoints and a digital elevation model.The method of calculating
viewscape metrics implemented in this package are based on the work of
Tabrizian et al. (2020) <doi:10.1016/j.landurbplan.2019.103704>. The algorithm of computing
viewshed is based on the work of
Franklin & Ray. (1994) <https://citeseerx.ist.psu.edu/document?repid=rep1&type=pdf&doi=555780f6f5d7e537eb1edb28862c86d1519af2be>.
Author: Xiaohao Yang [aut, cre, cph],
Nathan Fox [aut],
Derek Van Berkel [aut],
Mark Lindquist [aut]
Maintainer: Xiaohao Yang <xiaohaoy@umich.edu>
Diff between viewscape versions 2.0.1 dated 2024-11-10 and 2.0.2 dated 2024-12-19
DESCRIPTION | 8 ++++---- MD5 | 2 +- 2 files changed, 5 insertions(+), 5 deletions(-)
Title: Analysis of Continuous Glucose Monitor Data
Description: Reads in continuous glucose monitor data of many different formats, calculates a host of glycemic variability metrics, and plots glucose over time.
Author: Evan Olawsky [aut, cre],
Yuan Zhang [ctb],
Lynn Eberly [ctb]
Maintainer: Evan Olawsky <evanolawsky@gmail.com>
Diff between rGV versions 0.0.4 dated 2023-01-16 and 0.0.5 dated 2024-12-19
DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- NEWS.md | 4 ++-- R/metrics.R | 5 +---- inst |only 5 files changed, 11 insertions(+), 13 deletions(-)
Title: DSM and LiDAR downloader
Description: A collection of functions to search and donwload
DSM (Digital Surface Model) and LiDAR (Light Detection and Ranging) data via APIs,
including 'OpenTopography' <https://portal.opentopography.org/apidocs/> and
'TNMAccess' <https://apps.nationalmap.gov/tnmaccess/#/>.
Author: Xiaohao Yang [aut, cre, cph],
Nathan Fox [aut],
Derek Van Berkel [aut],
Mark Lindquist [aut]
Maintainer: Xiaohao Yang <xiaohaoy@umich.edu>
Diff between dsmSearch versions 1.0.2 dated 2024-08-20 and 1.1.0 dated 2024-12-19
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/get_dsm_30.R | 12 ++++++++---- R/utils.R | 43 ++++++++++++++++++++++++++----------------- man/get_dsm_30.Rd | 13 +++++++++---- 5 files changed, 51 insertions(+), 33 deletions(-)
Title: Radiocarbon Calibration Curves
Description: The IntCal20 radiocarbon calibration curves (Reimer et al. 2020 <doi:10.1017/RDC.2020.68>) are provided as a data package, together with previous IntCal curves (IntCal13, IntCal09, IntCal04, IntCal98), other curves (e.g., NOTCal04 [van der Plicht et al. 2004], Arnold & Libby 1951) and postbomb curves. Also provided are functions to copy the curves into memory, and to read, query and plot the data underlying the IntCal20 curves.
Author: Maarten Blaauw [aut, cre]
Maintainer: Maarten Blaauw <maarten.blaauw@qub.ac.uk>
Diff between rintcal versions 1.1.0 dated 2024-11-28 and 1.1.1 dated 2024-12-19
DESCRIPTION | 6 ++--- MD5 | 22 ++++++++++---------- NEWS.md | 5 ++++ R/rintcal.R | 53 +++++++++++++++++++++++++++++--------------------- build/partial.rdb |binary build/vignette.rds |binary inst/doc/rintcal.R | 4 ++- inst/doc/rintcal.Rmd | 4 ++- inst/doc/rintcal.html | 52 +++++++++++++++++++++++++------------------------ man/ccurve.Rd | 11 +++++++++- man/mix.ccurves.Rd | 1 vignettes/rintcal.Rmd | 4 ++- 12 files changed, 97 insertions(+), 65 deletions(-)
More information about bivariateLeaflet at CRAN
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Title: Graceful 'ggplot'-Based Graphics and Other Functions for GAMs
Fitted Using 'mgcv'
Description: Graceful 'ggplot'-based graphics and utility functions for working with generalized additive models (GAMs) fitted using the 'mgcv' package. Provides a reimplementation of the plot() method for GAMs that 'mgcv' provides, as well as 'tidyverse' compatible representations of estimated smooths.
Author: Gavin L. Simpson [aut, cre, cph]
,
Henrik Singmann [ctb]
Maintainer: Gavin L. Simpson <ucfagls@gmail.com>
Diff between gratia versions 0.9.2 dated 2024-06-25 and 0.10.0 dated 2024-12-19
DESCRIPTION | 14 MD5 | 456 ++-- NAMESPACE | 23 NEWS.md | 51 R/basis-funs.R | 9 R/conditional-values.R |only R/data-slice.R | 34 R/derivatives.R | 3 R/diagnose.R | 115 - R/distributional-models.R |only R/draw-gam.R | 16 R/draw-methods.R | 8 R/evenly.R | 7 R/family-utils.R | 13 R/fitted_values.R | 60 R/gjrm-methods.R | 2 R/penalty.R | 5 R/posterior-samples.R | 42 R/residuals.R | 4 R/samplers.R | 11 R/smooth-data.R | 27 R/smooth-estimates.R | 92 R/smooth-type.R | 2 R/subsetting.R | 12 R/utililties.R | 104 + README.md | 15 build/partial.rdb |binary build/vignette.rds |binary inst/doc/data-slices.R | 8 inst/doc/data-slices.Rmd | 8 inst/doc/data-slices.html | 488 ++--- inst/doc/gratia.Rmd | 39 inst/doc/gratia.html | 100 - man/appraise.Rd | 29 man/basis.Rd | 15 man/conditional_values.Rd |only man/data_slice.Rd | 37 man/derivative_samples.Rd | 5 man/dispersion.Rd |only man/draw.conditional_values.Rd |only man/draw.gam.Rd | 8 man/draw.gamlss.Rd | 2 man/draw.smooth_estimates.Rd | 3 man/eval_smooth.Rd | 2 man/figures/README-draw-gam-figure-2d-1.png |binary man/lss_parameters.Rd | 2 man/model_constant.Rd | 18 man/n_eta.Rd |only man/penalty.Rd | 15 man/post_link_funs.Rd | 2 man/qq_plot.Rd | 45 man/smooth_type.Rd | 4 man/user_draws.Rd | 14 man/worm_plot.Rd | 23 tests/Examples/gratia-Ex.Rout.save | 113 + tests/testthat/_snaps/backward/response-derivatives.md | 20 tests/testthat/_snaps/bam-ar/draw-bam-ar-1-factor-by.svg | 20 tests/testthat/_snaps/basis/draw-basis-works-with-a-gam-multiple-smooths.svg | 60 tests/testthat/_snaps/by-variables/draw-gam-user-select-and-parametric-true.svg | 20 tests/testthat/_snaps/central/response-derivatives.md | 20 tests/testthat/_snaps/compare-smooths/compare-smooths-all-smooths.svg | 221 -- tests/testthat/_snaps/compare-smooths/compare-smooths-bottom-legend.svg | 221 -- tests/testthat/_snaps/compare-smooths/compare-smooths-set-nrow-ncol.svg | 223 -- tests/testthat/_snaps/conditional-values |only tests/testthat/_snaps/conditional-values.md |only tests/testthat/_snaps/derivatives/draw-issue-47-derivatives-for-complex-factor-by.svg | 64 tests/testthat/_snaps/derivatives/draw-issue-47-derivatives-for-factor-by.svg | 40 tests/testthat/_snaps/derivatives/draw-issue-47-derivatives-for-gamm-factor-by.svg | 62 tests/testthat/_snaps/derivatives/draw-issue-47-derivs-for-ordered-factor-by.svg | 64 tests/testthat/_snaps/derivatives/draw-issue-57-derivatives-for-factor-by.svg | 70 tests/testthat/_snaps/diagnostic-plots/appraise-diagnostic-plots.svg | 60 tests/testthat/_snaps/diagnostic-plots/appraise-lm.svg | 60 tests/testthat/_snaps/diagnostic-plots/appraise-worm-plot.svg | 60 tests/testthat/_snaps/difference-smooths/draw-difference-smooths-bam.svg | 40 tests/testthat/_snaps/difference-smooths/draw-difference-smooths-bivariate-gam-contours.svg | 30 tests/testthat/_snaps/difference-smooths/draw-difference-smooths-bivariate-gam.svg | 30 tests/testthat/_snaps/difference-smooths/draw-difference-smooths-gam-fixed-scales.svg | 40 tests/testthat/_snaps/difference-smooths/draw-difference-smooths-gam-inc-grp-means.svg | 40 tests/testthat/_snaps/difference-smooths/draw-difference-smooths-gam-ref-line.svg | 40 tests/testthat/_snaps/difference-smooths/draw-difference-smooths-gam-user-data.svg | 40 tests/testthat/_snaps/difference-smooths/draw-difference-smooths-gam.svg | 40 tests/testthat/_snaps/difference-smooths/draw-difference-smooths-gamm.svg | 56 tests/testthat/_snaps/difference-smooths/draw-difference-smooths-gamm4.svg | 40 tests/testthat/_snaps/draw-gam/draw-gam-dlnm-m.svg | 53 tests/testthat/_snaps/draw-gam/draw-gam-m-2-fac-parametric.svg | 80 tests/testthat/_snaps/draw-gam/draw-gam-m-2-fac.svg | 40 tests/testthat/_snaps/draw-gam/draw-gam-m-ar1-by.svg | 20 tests/testthat/_snaps/draw-gam/draw-gam-m-bam.svg | 60 tests/testthat/_snaps/draw-gam/draw-gam-m-gam-constant-fun.svg | 60 tests/testthat/_snaps/draw-gam/draw-gam-m-gam-constant.svg | 60 tests/testthat/_snaps/draw-gam/draw-gam-m-gam-fun.svg | 60 tests/testthat/_snaps/draw-gam/draw-gam-m-gam-rotated.svg | 60 tests/testthat/_snaps/draw-gam/draw-gam-m-gam.svg | 60 tests/testthat/_snaps/draw-gam/draw-gam-m-gamgcv.svg | 60 tests/testthat/_snaps/draw-gam/draw-gam-m-gamm.svg | 60 tests/testthat/_snaps/draw-gam/draw-gam-m-gamm4.svg | 84 tests/testthat/_snaps/draw-gam/draw-gam-m-gaulss.svg | 60 tests/testthat/_snaps/draw-gam/draw-gam-m-para-sm-parametric.svg | 80 tests/testthat/_snaps/draw-gam/draw-gam-m-para-sm.svg | 20 tests/testthat/_snaps/draw-gam/draw-gam-m-scat.svg | 60 tests/testthat/_snaps/draw-gam/draw-gam-parametric-only-model-rotated-labels.svg | 80 tests/testthat/_snaps/draw-gam/draw-gam-quadvar-te.svg | 20 tests/testthat/_snaps/draw-gam/draw-gam-rm1.svg | 80 tests/testthat/_snaps/draw-gam/draw-gam-rm2.svg | 100 - tests/testthat/_snaps/draw-gam/draw-gam-trivar-te.svg | 32 tests/testthat/_snaps/draw-gam/grouped-by-gam.svg | 20 tests/testthat/_snaps/draw-gam/ordered-grouped-by-gam.svg | 20 tests/testthat/_snaps/draw-methods/draw-2d-smooth-with-spectral-palette.svg | 32 tests/testthat/_snaps/draw-methods/draw-am-with-2d-smooth.svg | 32 tests/testthat/_snaps/draw-methods/draw-am-with-factor-by-variable-smooth.svg | 60 tests/testthat/_snaps/draw-methods/draw-by-factor-basis.svg | 40 tests/testthat/_snaps/draw-methods/draw-derivatives-for-a-gam-rotated-labels.svg | 60 tests/testthat/_snaps/draw-methods/draw-derivatives-for-a-gam-with-default-change.svg | 60 tests/testthat/_snaps/draw-methods/draw-derivatives-for-a-gam-with-fixed-scales-rotated.svg | 60 tests/testthat/_snaps/draw-methods/draw-derivatives-for-a-gam-with-fixed-scales.svg | 60 tests/testthat/_snaps/draw-methods/draw-derivatives-for-a-gam-with-sizer-change.svg | 60 tests/testthat/_snaps/draw-methods/draw-derivatives-for-a-gam.svg | 60 tests/testthat/_snaps/draw-methods/draw-factor-by-variable-smooth-with-fixed-scales.svg | 60 tests/testthat/_snaps/draw-methods/draw-fs-smooth-with-discrete-plasma-palette.svg | 350 +-- tests/testthat/_snaps/draw-methods/draw-gam-model-with-fs-smooth.svg | 350 +-- tests/testthat/_snaps/draw-methods/draw-gam-model-with-ranef-smooth-factor-by.svg | 100 - 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tests/testthat/setup.R | 24 tests/testthat/test-basis.R | 7 tests/testthat/test-conditional-values.R |only tests/testthat/test-confint-methods.R | 6 tests/testthat/test-derivatives.R | 10 tests/testthat/test-draw-methods.R | 2 tests/testthat/test-hgam-paper.R | 8 tests/testthat/test-penalty.R | 7 tests/testthat/test-posterior-samples.R | 5 tests/testthat/test-utilities.R | 22 vignettes/data-slices.Rmd | 8 vignettes/getting-started.bib |only vignettes/gratia.Rmd | 39 234 files changed, 7117 insertions(+), 6473 deletions(-)
Title: DIF and DDF Detection by Non-Linear Regression Models
Description: Detection of differential item functioning (DIF) among dichotomously scored items and differential distractor functioning (DDF) among unscored items with non-linear regression procedures based on generalized logistic regression models (Hladka & Martinkova, 2020, <doi:10.32614/RJ-2020-014>).
Author: Adela Hladka [aut, cre],
Patricia Martinkova [aut],
Karel Zvara [ctb]
Maintainer: Adela Hladka <hladka@cs.cas.cz>
Diff between difNLR versions 1.4.2-1 dated 2023-05-03 and 1.5.0 dated 2024-12-19
DESCRIPTION | 12 MD5 | 52 +- NAMESPACE | 9 NEWS.md | 31 + R/MLR.R | 71 +-- R/NLR.R | 695 +++++++++++++++++++------------ R/difNLR-package.R | 12 R/difNLR.R | 1074 +++++++++++++++++++++++++++--------------------- R/difORD.R | 3 R/estimNLR.R | 951 +++++++++++++++++++++++++++++++++++------- R/formulaNLR.R | 396 +++++++++++------ R/private.R | 22 R/startNLR.R | 323 +++++++++----- README.md | 10 build/partial.rdb |binary man/NLR.Rd | 308 ++++++++----- man/coef.difNLR.Rd | 59 +- man/difNLR-package.Rd | 11 man/difNLR.Rd | 302 +++++++------ man/difORD.Rd | 3 man/estimNLR.Rd | 199 ++++++-- man/formulaNLR.Rd | 125 +++-- man/logLik.difNLR.Rd | 35 - man/plot.difNLR.Rd | 85 ++- man/predict.difNLR.Rd | 61 +- man/residuals.difNLR.Rd | 36 - man/startNLR.Rd | 128 +++-- 27 files changed, 3242 insertions(+), 1771 deletions(-)
Title: Embedding FusionCharts in R
Description: FusionCharts provides awesome and minimalist functions to make beautiful interactive charts <https://www.fusioncharts.com/>.
Author: Alex Yahiaoui Martinez [aut, cre]
Maintainer: Alex Yahiaoui Martinez <yahiaoui-martinez.alex@outlook.com>
Diff between fusionchartsR versions 1.0.0 dated 2024-11-09 and 1.1.0 dated 2024-12-19
DESCRIPTION | 8 MD5 | 91 ++-- NAMESPACE | 3 R/fusionAnchors.R | 115 ++--- R/fusionAxis.R | 119 ++--- R/fusionBackground.R | 199 ++++----- R/fusionCanvas.R | 162 +++---- R/fusionCaption.R | 106 ++--- R/fusionCustomAxis.R | 480 +++++++++++------------ R/fusionCustomBoxplot.R | 126 +++--- R/fusionCustomLegend.R | 238 +++++------ R/fusionDiv.R | 177 ++++---- R/fusionLegend.R | 117 ++--- R/fusionLogo.R | 80 +-- R/fusionMultiPlot.R | 424 ++++++++++---------- R/fusionPalette.R | 30 - R/fusionPlot.R | 458 ++++++++++------------ R/fusionSubcaption.R | 92 ++-- R/fusionTheme.R | 49 +- R/fusionTooltip.R | 85 ++-- R/fusionTrendline.R | 198 ++++----- R/ggfusionPlot.R |only R/runDemo.R | 149 +++---- README.md | 2 inst/htmlwidgets/fusionMultiPlot.js | 663 ++++++++++++++++---------------- inst/htmlwidgets/fusionPlot.js | 681 ++++++++++++++++----------------- man/figures/lifecycle-experimental.svg |only man/figures/logo.png |binary man/fusionAnchors.Rd | 8 man/fusionAxis.Rd | 10 man/fusionBackground.Rd | 8 man/fusionCanvas.Rd | 8 man/fusionCaption.Rd | 18 man/fusionCustomAxis.Rd | 13 man/fusionCustomBoxplot.Rd | 10 man/fusionCustomLegend.Rd | 8 man/fusionDiv.Rd | 10 man/fusionLegend.Rd | 8 man/fusionLogo.Rd | 8 man/fusionPalette.Rd | 8 man/fusionPlot.Rd | 2 man/fusionSubcaption.Rd | 18 man/fusionTheme.Rd | 7 man/fusionTooltip.Rd | 8 man/fusionTrendline.Rd | 8 man/ggfusionPlot.Rd |only man/pipe.Rd | 2 man/runDemo.Rd | 8 48 files changed, 2492 insertions(+), 2530 deletions(-)
Title: Analyse Eye Data
Description: Enables the automation of actions across the pipeline, including
initial steps of transforming binocular data and gap repair to event-based
processing such as fixations, saccades, and entry/duration in Areas of
Interest (AOIs). It also offers visualisation of eye movement and AOI
entries. These tools take relatively raw (trial, time, x, and y form) data
and can be used to return fixations, saccades, and AOI entries and time spent
in AOIs. As the tools rely on this basic data format, the functions can work
with data from any eye tracking device. Implements fixation and saccade
detection using methods proposed by Salvucci and Goldberg (2000)
<doi:10.1145/355017.355028>.
Author: Tom Beesley [aut, cre],
Matthew Ivory [aut]
Maintainer: Tom Beesley <t.beesley@lancaster.ac.uk>
Diff between eyetools versions 0.8.0 dated 2024-12-18 and 0.8.1 dated 2024-12-19
DESCRIPTION | 8 MD5 | 72 +++--- NAMESPACE | 1 NEWS.md | 8 R/AOI_seq.R | 10 R/AOI_time.R | 34 ++- R/compare_algorithms.R | 12 - R/create_AOI_df.R | 36 ++- R/fixation_VTI.R | 23 -- R/fixation_dispersion.R | 41 +-- R/plot_seq.R | 7 R/smoother.R | 2 README.md | 5 inst/doc/eyetools.R | 46 +--- inst/doc/eyetools.Rmd | 48 ++-- inst/doc/eyetools.html | 418 +++++++++++++++---------------------- man/AOI_seq.Rd | 10 man/AOI_time.Rd | 5 man/compare_algorithms.Rd | 6 man/create_AOI_df.Rd | 16 + man/figures/unnamed-chunk-10-1.png |binary man/figures/unnamed-chunk-18-1.png |binary man/figures/unnamed-chunk-25-1.png |binary man/figures/unnamed-chunk-26-1.png |binary man/figures/unnamed-chunk-26-2.png |binary man/figures/unnamed-chunk-27-1.png |binary man/figures/unnamed-chunk-28-1.png |binary man/figures/unnamed-chunk-28-2.png |binary man/figures/unnamed-chunk-28-3.png |binary man/figures/unnamed-chunk-29-1.png |binary man/figures/unnamed-chunk-30-1.png |binary man/figures/unnamed-chunk-30-2.png |binary man/figures/unnamed-chunk-30-3.png |binary man/figures/unnamed-chunk-9-1.png |binary man/fixation_VTI.Rd | 6 man/fixation_dispersion.Rd | 4 vignettes/eyetools.Rmd | 48 ++-- 37 files changed, 422 insertions(+), 444 deletions(-)
Title: May All Data be Reproducible and Transparent (MADRaT) *
Description: Provides a framework which should improve reproducibility and
transparency in data processing. It provides functionality such as
automatic meta data creation and management, rudimentary quality
management, data caching, work-flow management and data aggregation.
* The title is a wish not a promise. By no means we expect this
package to deliver everything what is needed to achieve full
reproducibility and transparency, but we believe that it supports
efforts in this direction.
Author: Jan Philipp Dietrich [aut, cre] ,
Lavinia Baumstark [aut] ,
Stephen Wirth [aut] ,
Anastasis Giannousakis [aut],
Renato Rodrigues [aut] ,
Benjamin Leon Bodirsky [aut] ,
Debbora Leip [aut] ,
Ulrich Kreidenweis [aut],
David Klein [aut] ,
Pascal Sauer [a [...truncated...]
Maintainer: Jan Philipp Dietrich <dietrich@pik-potsdam.de>
Diff between madrat versions 3.6.4 dated 2023-08-23 and 3.15.6 dated 2024-12-19
DESCRIPTION | 59 +++++++---- MD5 | 158 ++++++++++++++++++-------------- NAMESPACE | 8 - R/cacheName.R | 15 ++- R/calcOutput.R | 89 +++++++----------- R/cleanComment.R |only R/compareMadratOutputs.R | 2 R/convertTau.R | 51 +++++----- R/downloadSource.R | 4 R/fingerprint.R | 114 ++++++++++++----------- R/fullEXAMPLE.R | 8 - R/functionCallString.R |only R/getConfig.R | 6 + R/getFromComment.R |only R/getLinkFunction.R |only R/getMadratGraph.R | 2 R/getMadratInfo.R | 8 - R/getSourceFolder.R |only R/initializeConfig.R | 27 +++-- R/installedMadratUniverse.R | 23 +++- R/isWrapperActive.R | 1 R/madrat-package.R | 3 R/prepComment.R |only R/prepExtendedComment.R |only R/prepFunctionName.R | 95 ++++++++++--------- R/pucAggregate.R | 15 ++- R/putMadratMessage.R | 2 R/readSource.R | 38 ++++--- R/redirect.R |only R/redirectSource.R |only R/redirectTau.R |only R/resetMadratMessages.R | 2 R/retrieveData.R | 40 ++++---- R/robustOrder.R | 4 R/setConfig.R | 5 - R/toolAggregate.R | 45 +++++---- R/toolGetMapping.R | 49 ++++++--- R/toolISOhistorical.R | 19 ++- R/toolTimeAverage.R | 54 ++++++---- R/toolstartmessage.R | 32 +----- R/visualizeDependencies.R | 32 ++++-- README.md | 15 +-- build/partial.rdb |only build/vignette.rds |binary inst/doc/madrat-caching.R | 20 ++-- inst/doc/madrat-caching.html | 38 +++---- inst/doc/madrat-puc.R | 14 +- inst/doc/madrat-puc.Rmd | 6 - inst/doc/madrat-puc.html | 14 +- inst/doc/madrat.R | 28 ++--- inst/doc/madrat.html | 36 +++---- inst/extdata/country2iso.csv | 7 + man/calcOutput.Rd | 6 + man/cleanComment.Rd |only man/compareMadratOutputs.Rd | 2 man/downloadSource.Rd | 2 man/fingerprint.Rd | 2 man/fullEXAMPLE.Rd | 10 -- man/functionCallString.Rd |only man/getFromComment.Rd |only man/getLinkFunction.Rd |only man/getSourceFolder.Rd |only man/initializeConfig.Rd | 5 - man/installedMadratUniverse.Rd | 16 +-- man/madrat-package.Rd | 26 +++++ man/prepComment.Rd |only man/prepExtendedComment.Rd |only man/prepFunctionName.Rd | 8 - man/readSource.Rd | 2 man/redirect.Rd |only man/redirectSource.Rd |only man/redirectTau.Rd |only man/retrieveData.Rd | 2 man/robustOrder.Rd | 2 man/setConfig.Rd | 6 + man/toolAggregate.Rd | 14 +- man/toolGetMapping.Rd | 2 man/toolTimeAverage.Rd | 4 man/toolstartmessage.Rd | 12 +- tests/testthat/setup.R | 1 tests/testthat/test-calcOutput.R | 49 +++++---- tests/testthat/test-fingerprint.R | 1 tests/testthat/test-puc.R | 40 ++++---- tests/testthat/test-readSource.R | 48 +++++++-- tests/testthat/test-redirectSource.R |only tests/testthat/test-toolAggregate.R | 18 +++ tests/testthat/test-toolCountryFill.R | 6 - tests/testthat/test-toolGetMapping.R | 10 +- tests/testthat/test-toolISOhistorical.R | 44 +++++--- tests/testthat/test-toolTimeAverage.R | 3 vignettes/madrat-puc.Rmd | 6 - 91 files changed, 868 insertions(+), 667 deletions(-)
Title: Just Another Latent Space Network Clustering Algorithm
Description: Fit and simulate latent space network cluster models using an expectation-maximization algorithm.
Enables flexible modeling of unweighted network data, supporting both directed and undirected networks,
with or without degree heterogeneity. Designed to handle large networks efficiently, it allows users to explore
network structure through latent space representations, identify clusters within network data, and simulate models
with varying clustering and connectivity patterns.
Author: Alan Arakkal [aut, cre, cph] ,
Daniel Sewell [aut]
Maintainer: Alan Arakkal <alan-arakkal@uiowa.edu>
Diff between JANE versions 0.1.1 dated 2024-11-14 and 0.2.1 dated 2024-12-19
DESCRIPTION | 6 - MD5 | 16 ++-- NAMESPACE | 2 NEWS.md | 13 +++- R/generics.R | 169 +++++++++++++++++++++++++++++++++++++++------------- R/imports.R | 2 R/plot_data.R | 155 +++++++++++++++++++++++++---------------------- man/plot.JANE.Rd | 12 +++ man/summary.JANE.Rd | 1 9 files changed, 253 insertions(+), 123 deletions(-)
Title: An 'Armadillo' Interface
Description: Provides function declarations and inline function definitions that
facilitate communication between R and the 'Armadillo' 'C++' library for
linear algebra and scientific computing. This implementation is detailed
in Vargas Sepulveda and Schneider Malamud (2024)
<doi:10.48550/arXiv.2408.11074>.
Author: Mauricio Vargas Sepulveda [aut, cre]
,
Jonathan Schneider Malamud [ctb],
Conrad Sanderson [aut] )
Maintainer: Mauricio Vargas Sepulveda <m.sepulveda@mail.utoronto.ca>
Diff between cpp11armadillo versions 0.4.0 dated 2024-12-13 and 0.4.1 dated 2024-12-19
DESCRIPTION | 10 +++--- MD5 | 17 ++++++---- NEWS.md | 8 ++++ R/cpp11armadillo-package.R | 17 ++++++++++ README.md | 75 +++++++++++++++++++++++++++++++++------------ build/vignette.rds |binary configure | 31 ++++++++++++++---- inst/doc/data-types.R |only inst/doc/data-types.Rmd |only inst/doc/data-types.html |only man/check_cpp11.Rd |only vignettes/data-types.Rmd |only 12 files changed, 120 insertions(+), 38 deletions(-)
More information about cpp11armadillo at CRAN
Permanent link
Title: Spatial Empirical Dynamic Modeling
Description: Integrates empirical dynamic modeling (EDM) with geospatial cross-sectional data to analyze causality via geographical convergent cross mapping (GCCM) described in Gao et al. (2023) <doi:10.1038/s41467-023-41619-6>.
Author: Wenbo Lv [aut, cre, cph]
Maintainer: Wenbo Lv <lyu.geosocial@gmail.com>
Diff between spEDM versions 1.0 dated 2024-12-16 and 1.1 dated 2024-12-19
DESCRIPTION | 6 +- MD5 | 16 +++--- NEWS.md | 4 + R/gccm.R | 12 +--- README.md | 4 - inst/doc/GCCM.Rmd | 132 ++++++++++++++++++++++++++-------------------------- inst/doc/GCCM.html | 134 ++++++++++++++++++++++++++--------------------------- man/gccm.Rd | 8 +-- vignettes/GCCM.Rmd | 132 ++++++++++++++++++++++++++-------------------------- 9 files changed, 226 insertions(+), 222 deletions(-)
More information about sae.projection at CRAN
Permanent link
Title: Restricted Statistical Estimation and Inference for Linear
Models
Description: Allow for easy-to-use testing or evaluating of linear equality and inequality restrictions about parameters and effects in (generalized) linear statistical models.
Author: Leonard Vanbrabant [aut, cre],
Rebecca Kuiper [aut],
Yves Rosseel [ctb],
Aleksandra Dacko [ctb]
Maintainer: Leonard Vanbrabant <info@restriktor.org>
Diff between restriktor versions 0.5-90 dated 2024-09-11 and 0.6-10 dated 2024-12-19
DESCRIPTION | 6 MD5 | 74 ++- NAMESPACE | 11 R/conGLM.R | 4 R/conLM.R | 14 R/conMLM.R | 4 R/conRLM.R | 4 R/con_constraints.R | 59 +-- R/ext_ic_infer.R | 2 R/goric.R | 311 +++++++++++----- R/goric_benchmark.R | 68 ++- R/goric_benchmark_plot.R | 43 +- R/goric_benchmark_print.R | 50 +- R/goric_benchmark_utilities.R | 106 ----- R/goric_calculate_IC_weights.R | 31 - R/goric_evSyn.R | 583 +++++++----------------------- R/goric_evSyn_plot.R |only R/goric_evSyn_print.R |only R/goric_evSyn_summary.R |only R/goric_evSyn_utilities.R |only R/goric_penalty.R | 2 R/goric_print.R | 217 ++++++++--- R/goric_utilities.R | 103 +++++ R/gorica_est.R | 62 ++- R/gorica_est_summary.R | 2 R/restriktor_print.R | 2 R/restriktor_print_summary.R | 14 R/restriktor_summary.R | 16 R/utilities.R | 169 +++++++- inst/doc/Guidelines_GORIC-benchmarks.R | 2 inst/doc/Guidelines_GORIC-benchmarks.Rmd | 4 inst/doc/Guidelines_GORIC-benchmarks.html | 196 +++++----- inst/doc/Guidelines_GORIC_output.html | 407 +++++++++++--------- man/calculate_IC_weights.Rd | 10 man/evSyn.Rd | 105 ++++- man/goric.Rd | 49 +- man/goric_benchmark.Rd | 22 - man/myLLs.Rd | 4 man/restriktor-package.rd | 4 vignettes/Guidelines_GORIC-benchmarks.Rmd | 4 40 files changed, 1570 insertions(+), 1194 deletions(-)
Title: Interpolating Age-Specific Mortality Rates at All Ages
Description: Mortality rates are typically provided in an abridged format, i.e., by age groups 0, [1, 5], [5, 10]', '[10, 15]', and so on. Some applications necessitate a detailed (single) age description. Despite the large number of proposed approaches in the literature, only a few methods ensure great performance at both younger and higher ages. For example, the 6-term 'Lagrange' interpolation function is well suited to mortality interpolation at younger ages (with irregular intervals), but not at older ages. The 'Karup-King' method, on the other hand, performs well at older ages but is not suitable for younger ones. Interested readers can find a full discussion of the two stated methods in the book Shryock, Siegel, and Associates (1993).The Q2q package combines the two methods to allow for the interpolation of mortality rates across all age groups. It begins by implementing each method independently, and then the resulting curves are linked using a 5-age averaged error between the two partial cu [...truncated...]
Author: Farid FLICI [aut, cre]
Maintainer: Farid FLICI <farid.flici@cread.dz>
Diff between Q2q versions 0.1.1 dated 2024-11-07 and 0.1.2 dated 2024-12-19
DESCRIPTION | 10 +-- MD5 | 18 ++--- R/Q2q.R | 98 ++++++++++++++++++------------ README.md | 64 +++++++------------ man/figures/README-unnamed-chunk-12-1.png |binary man/figures/README-unnamed-chunk-13-1.png |binary man/figures/README-unnamed-chunk-21-1.png |binary man/figures/README-unnamed-chunk-21-2.png |binary man/getqx.Rd | 18 ++--- man/getqxt.Rd | 22 +++--- 10 files changed, 121 insertions(+), 109 deletions(-)
Title: Graph the Relationship Between Functions in an R Package
Description: It is often useful when developing an R package to track the relationship between functions in order to appropriately test and track changes. This package generates a graph of the relationship between all R functions in a package. It can also be used on any directory containing .R files which can be very useful for 'shiny' apps or other non-package workflows.
Author: David Oliver [aut, cre, cph]
Maintainer: David Oliver <doliv071@gmail.com>
Diff between pkgGraphR versions 0.2.0 dated 2024-04-02 and 0.3.0 dated 2024-12-19
DESCRIPTION | 8 +-- MD5 | 20 ++++----- R/functions.r | 97 +++++++++++++++++++++++------------------------ README.md | 81 +++++++++++++++++++++++++++++++++------ build/vignette.rds |binary inst/doc/pkgGraphR.Rmd | 2 inst/doc/pkgGraphR.html | 42 ++++++++++---------- man/buildPackageGraph.Rd | 4 - man/collectFunNames.Rd | 2 man/plotPackageGraph.Rd | 12 ++--- vignettes/pkgGraphR.Rmd | 2 11 files changed, 165 insertions(+), 105 deletions(-)
Title: Access to the Global Inventory of Floras and Traits (GIFT)
Description: Retrieving regional plant checklists, species traits and
distributions, and environmental data from the Global Inventory of Floras and
Traits (GIFT). More information about the GIFT database can be found at
<https://gift.uni-goettingen.de/about> and the map of available floras can be
visualized at <https://gift.uni-goettingen.de/map>. The API and associated
queries can be accessed according the following scheme:
<https://gift.uni-goettingen.de/api/extended/index2.0.php?query=env_raster>.
Author: Pierre Denelle [aut, cre] ,
Patrick Weigelt [aut]
Maintainer: Pierre Denelle <pierre.denelle@gmail.com>
Diff between GIFT versions 1.3.2 dated 2024-02-27 and 1.3.3 dated 2024-12-19
GIFT-1.3.2/GIFT/inst/doc/GIFT_API.R |only GIFT-1.3.2/GIFT/inst/doc/GIFT_API.Rmd |only GIFT-1.3.2/GIFT/inst/doc/GIFT_API.html |only GIFT-1.3.2/GIFT/inst/doc/GIFT_advanced_users.R |only GIFT-1.3.2/GIFT/inst/doc/GIFT_advanced_users.Rmd |only GIFT-1.3.2/GIFT/inst/doc/GIFT_advanced_users.html |only GIFT-1.3.2/GIFT/vignettes/GIFT_API.Rmd |only GIFT-1.3.2/GIFT/vignettes/GIFT_advanced_users.Rmd |only GIFT-1.3.3/GIFT/DESCRIPTION | 8 GIFT-1.3.3/GIFT/MD5 | 43 GIFT-1.3.3/GIFT/NEWS.md | 12 GIFT-1.3.3/GIFT/R/GIFT_checklists.R | 9 GIFT-1.3.3/GIFT/R/GIFT_spatial.R | 9 GIFT-1.3.3/GIFT/R/GIFT_taxgroup.R | 2 GIFT-1.3.3/GIFT/README.md | 17 GIFT-1.3.3/GIFT/build/vignette.rds |binary GIFT-1.3.3/GIFT/inst/doc/GIFT.R | 872 ++++++------- GIFT-1.3.3/GIFT/inst/doc/GIFT.Rmd | 18 GIFT-1.3.3/GIFT/inst/doc/GIFT.html | 1012 +++++++++++++++- GIFT-1.3.3/GIFT/man/GIFT_checklists.Rd | 9 GIFT-1.3.3/GIFT/man/GIFT_spatial.Rd | 9 GIFT-1.3.3/GIFT/man/figures/GIFT_complete_floristic.svg | 136 +- GIFT-1.3.3/GIFT/man/figures/GIFT_complete_taxon.svg | 140 +- GIFT-1.3.3/GIFT/man/figures/anemone_map.png |binary GIFT-1.3.3/GIFT/man/figures/anemone_map2.png |binary GIFT-1.3.3/GIFT/man/figures/tenerife_phylogeny.png |only GIFT-1.3.3/GIFT/vignettes/GIFT.Rmd | 18 27 files changed, 1623 insertions(+), 691 deletions(-)
Title: Constrained B-Splines (Sparse Matrix Based)
Description: Qualitatively Constrained (Regression) Smoothing Splines via
Linear Programming and Sparse Matrices.
Author: Pin T. Ng [aut],
Martin Maechler [aut, cre]
Maintainer: Martin Maechler <maechler@stat.math.ethz.ch>
Diff between cobs versions 1.3-8 dated 2024-03-06 and 1.3-9 dated 2024-12-19
cobs-1.3-8/cobs/README |only cobs-1.3-9/cobs/ChangeLog | 22 ++++ cobs-1.3-9/cobs/DESCRIPTION | 19 ++-- cobs-1.3-9/cobs/MD5 | 40 ++++---- cobs-1.3-9/cobs/R/drqssbc.R | 16 ++- cobs-1.3-9/cobs/R/l1Design.R | 6 - cobs-1.3-9/cobs/R/looDesign.R | 6 - cobs-1.3-9/cobs/R/qbsks.R | 108 ++++++++++++----------- cobs-1.3-9/cobs/R/scobs.R | 63 ++++++------- cobs-1.3-9/cobs/README.md |only cobs-1.3-9/cobs/TODO | 5 + cobs-1.3-9/cobs/build/partial.rdb |binary cobs-1.3-9/cobs/man/cobs.Rd | 10 +- cobs-1.3-9/cobs/man/drqssbc.Rd | 4 cobs-1.3-9/cobs/man/qbsks.Rd | 28 +++--- cobs-1.3-9/cobs/tests/ex1.R | 5 - cobs-1.3-9/cobs/tests/ex2-long.R | 7 - cobs-1.3-9/cobs/tests/ex3.Rout.save | 13 +- cobs-1.3-9/cobs/tests/multi-constr.R | 44 +++++---- cobs-1.3-9/cobs/tests/multi-constr.Rout.save | 126 ++++++++++++++++++++------- cobs-1.3-9/cobs/tests/small-ex.Rout.save | 14 +-- cobs-1.3-9/cobs/tests/temp.Rout.save | 35 +++++-- 22 files changed, 361 insertions(+), 210 deletions(-)
Title: Anything to 'POSIXct' or 'Date' Converter
Description: Convert input in any one of character, integer, numeric, factor,
or ordered type into 'POSIXct' (or 'Date') objects, using one of a number of
predefined formats, and relying on Boost facilities for date and time parsing.
Author: Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between anytime versions 0.3.10 dated 2024-12-02 and 0.3.11 dated 2024-12-19
anytime-0.3.10/anytime/inst/tinytest/test_simple.R |only anytime-0.3.11/anytime/ChangeLog | 6 ++++++ anytime-0.3.11/anytime/DESCRIPTION | 8 ++++---- anytime-0.3.11/anytime/MD5 | 11 +++++------ anytime-0.3.11/anytime/build/partial.rdb |binary anytime-0.3.11/anytime/inst/NEWS.Rd | 6 ++++++ anytime-0.3.11/anytime/inst/doc/anytime-introduction.pdf |binary 7 files changed, 21 insertions(+), 10 deletions(-)
Title: Likelihood-Free Parameter Estimation using Neural Networks
Description: An 'R' interface to the 'Julia' package 'NeuralEstimators.jl'. The package facilitates the user-friendly development of neural point estimators, which are neural networks that map data to a point summary of the posterior distribution. These estimators are likelihood-free and amortised, in the sense that, after an initial setup cost, inference from observed data can be made in a fraction of the time required by conventional approaches; see Sainsbury-Dale, Zammit-Mangion, and Huser (2024) <doi:10.1080/00031305.2023.2249522> for further details and an accessible introduction. The package also enables the construction of neural networks that approximate the likelihood-to-evidence ratio in an amortised manner, allowing one to perform inference based on the likelihood function or the entire posterior distribution; see Zammit-Mangion, Sainsbury-Dale, and Huser (2024, Sec. 5.2) <doi:10.48550/arXiv.2404.12484>, and the references therein. The package accommodates any model for which [...truncated...]
Author: Matthew Sainsbury-Dale [aut, cre]
Maintainer: Matthew Sainsbury-Dale <msainsburydale@gmail.com>
Diff between NeuralEstimators versions 0.1.1 dated 2024-11-03 and 0.1.2 dated 2024-12-19
DESCRIPTION | 6 ++-- MD5 | 24 +++++++++---------- R/core.R | 33 +++++++++++++++++---------- README.md | 6 +++- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 50 +++++++++++++++++++++++++++++------------ inst/doc/NeuralEstimators.html | 2 - man/bootstrap.Rd | 17 +++++++++++++ man/estimate.Rd | 9 ++++--- man/loadstate.Rd | 2 - man/loadweights.Rd | 3 +- tests/testthat/test-core.R | 1 13 files changed, 103 insertions(+), 50 deletions(-)
More information about NeuralEstimators at CRAN
Permanent link
Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Olivier Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.11 dated 2024-11-14 and 1.12 dated 2024-12-19
DESCRIPTION | 6 MD5 | 156 ++++----- NAMESPACE | 8 NEWS.md | 27 + R/RcppExports.R | 4 R/class-style_mgr.R | 34 +- R/class-workbook-utils.R | 26 + R/class-workbook-wrappers.R | 138 ++++++-- R/class-workbook.R | 425 +++++++++++++++++--------- R/class-worksheet.R | 24 + R/conditional_formatting.R | 2 R/get-named-regions.R | 3 R/helper-functions.R | 200 ++++++++++-- R/openxlsx2-package.R | 12 R/pivot_table.R | 2 R/read.R | 30 - R/utils.R | 13 R/wb_functions.R | 1 R/wb_load.R | 69 +++- R/wb_styles.R | 5 R/write.R | 91 +++-- inst/AUTHORS | 2 inst/WORDLIST | 4 inst/doc/Update-from-openxlsx.html | 5 inst/doc/conditional-formatting.html | 5 inst/doc/openxlsx2.html | 5 inst/doc/openxlsx2_charts_manual.html | 5 inst/doc/openxlsx2_formulas_manual.html | 5 inst/doc/openxlsx2_read_to_df.R | 2 inst/doc/openxlsx2_read_to_df.Rmd | 2 inst/doc/openxlsx2_read_to_df.html | 7 inst/doc/openxlsx2_style_manual.html | 5 man/create_cell_style.Rd | 4 man/create_sparklines.Rd | 32 + man/grouping-wb.Rd | 8 man/properties-wb.Rd | 5 man/waivers.Rd | 2 man/wbWorkbook.Rd | 55 +++ man/wb_add_cell_style.Rd | 4 man/wb_add_data_table.Rd | 3 man/wb_add_slicer.Rd | 3 man/wb_merge_cells.Rd | 11 man/wb_set_bookview.Rd | 38 ++ man/wb_set_header_footer.Rd | 23 + man/wb_workbook.Rd | 3 src/RcppExports.cpp | 34 +- src/helper_functions.cpp | 324 ++++++++++--------- src/load_workbook.cpp | 12 src/openxlsx2.h | 16 src/openxlsx2_types.h | 57 +-- src/pugi.cpp | 81 ++-- src/strings_xml.cpp | 2 src/styles_xml.cpp | 230 +++++++------- src/write_file.cpp | 8 src/xlsb.cpp | 141 ++++---- src/xlsb_funs.h | 194 ++++++----- tests/testthat/test-class-comment.R | 9 tests/testthat/test-class-hyperlink.R | 3 tests/testthat/test-class-workbook-wrappers.R | 12 tests/testthat/test-class-workbook.R | 62 +++ tests/testthat/test-class-worksheet.R | 80 ++++ tests/testthat/test-date_time_conversion.R | 3 tests/testthat/test-deleting_tables.R | 3 tests/testthat/test-fill_merged_cells.R | 12 tests/testthat/test-formulas.R | 12 tests/testthat/test-helper-functions.R | 195 +++++++++++ tests/testthat/test-loading_workbook.R | 23 + tests/testthat/test-loading_workbook_tables.R | 3 tests/testthat/test-outlines.R | 26 + tests/testthat/test-read_from_created_wb.R | 6 tests/testthat/test-read_sources.R | 38 ++ tests/testthat/test-save.R | 5 tests/testthat/test-styles_xml.R | 12 tests/testthat/test-tables.R | 2 tests/testthat/test-wb_functions.R | 22 + tests/testthat/test-wb_styles.R | 12 tests/testthat/test-write.R | 150 ++++++++- tests/testthat/test-writing_posixct.R | 6 vignettes/openxlsx2_read_to_df.Rmd | 2 79 files changed, 2306 insertions(+), 1005 deletions(-)
Title: Summarise Patient-Level Drug Utilisation in Data Mapped to the
OMOP Common Data Model
Description: Summarise patient-level drug utilisation cohorts using data mapped
to the Observational Medical Outcomes Partnership (OMOP) common data model.
New users and prevalent users cohorts can be generated and their
characteristics, indication and drug use summarised.
Author: Marti Catala [aut, cre] ,
Mike Du [ctb] ,
Yuchen Guo [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Xintong Li [ctb] ,
Marta Alcalde-Herraiz [ctb] ,
Nuria Mercade-Besora [aut] ,
Xihang Chen [aut]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between DrugUtilisation versions 0.8.0 dated 2024-12-09 and 0.8.1 dated 2024-12-19
DESCRIPTION | 6 MD5 | 24 NAMESPACE | 1 NEWS.md | 31 R/DrugUtilisation-package.R | 5 R/addIntersect.R | 98 R/summariseDrugRestart.R | 8 R/summariseDrugUtilisation.R | 10 R/summariseIntersect.R | 30 R/summariseProportionOfPatientsCovered.R | 6 inst/doc/create_cohorts.html | 54 inst/doc/drug_utilisation.html | 8713 +++++++++++++++++++++++++------ man/addIndication.Rd | 6 13 files changed, 7373 insertions(+), 1619 deletions(-)
More information about DrugUtilisation at CRAN
Permanent link
Title: Connect to an OMOP Common Data Model
Description: Provides tools for working with observational health data in the
Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax.
Common data model database table references are stored in a single compound object along with metadata.
Author: Adam Black [aut, cre] ,
Artem Gorbachev [aut],
Edward Burn [aut],
Marti Catala Sabate [aut]
Maintainer: Adam Black <black@ohdsi.org>
Diff between CDMConnector versions 1.6.1 dated 2024-11-29 and 1.7.0 dated 2024-12-19
CDMConnector-1.6.1/CDMConnector/man/assert_tables.Rd |only CDMConnector-1.6.1/CDMConnector/man/cdmName.Rd |only CDMConnector-1.6.1/CDMConnector/man/cdm_from_con.Rd |only CDMConnector-1.6.1/CDMConnector/man/cdm_from_environment.Rd |only CDMConnector-1.6.1/CDMConnector/man/cdm_from_files.Rd |only CDMConnector-1.6.1/CDMConnector/man/cdm_select_tbl.Rd |only CDMConnector-1.6.1/CDMConnector/man/cohort_erafy.Rd |only CDMConnector-1.6.1/CDMConnector/man/cohort_union.Rd |only CDMConnector-1.6.1/CDMConnector/man/copy_cdm_to.Rd |only CDMConnector-1.6.1/CDMConnector/man/eunomia_is_available.Rd |only CDMConnector-1.6.1/CDMConnector/man/intersect_cohorts.Rd |only CDMConnector-1.6.1/CDMConnector/man/list_tables.Rd |only CDMConnector-1.6.1/CDMConnector/man/read_cohort_set.Rd |only CDMConnector-1.6.1/CDMConnector/man/recordCohortAttrition.Rd |only CDMConnector-1.6.1/CDMConnector/man/summarise_quantile.Rd |only CDMConnector-1.6.1/CDMConnector/man/tbl_group.Rd |only CDMConnector-1.6.1/CDMConnector/man/union_cohorts.Rd |only CDMConnector-1.6.1/CDMConnector/man/uniqueTableName.Rd |only CDMConnector-1.6.1/CDMConnector/man/validate_cdm.Rd |only CDMConnector-1.6.1/CDMConnector/tests/testthat/test-validate.R |only CDMConnector-1.7.0/CDMConnector/DESCRIPTION | 12 CDMConnector-1.7.0/CDMConnector/MD5 | 237 ++-- CDMConnector-1.7.0/CDMConnector/NAMESPACE | 7 CDMConnector-1.7.0/CDMConnector/NEWS.md | 13 CDMConnector-1.7.0/CDMConnector/R/Eunomia.R | 53 - CDMConnector-1.7.0/CDMConnector/R/benchmarkCDMConnector.R | 43 CDMConnector-1.7.0/CDMConnector/R/cdm.R | 497 ++++------ CDMConnector-1.7.0/CDMConnector/R/cdmSubset.R | 58 - CDMConnector-1.7.0/CDMConnector/R/cdm_from_environment.R | 38 CDMConnector-1.7.0/CDMConnector/R/cohortTransformations.R | 25 CDMConnector-1.7.0/CDMConnector/R/cohort_ddl.R | 14 CDMConnector-1.7.0/CDMConnector/R/compute.R | 42 CDMConnector-1.7.0/CDMConnector/R/copy_cdm_to.R | 14 CDMConnector-1.7.0/CDMConnector/R/dateadd.R | 7 CDMConnector-1.7.0/CDMConnector/R/dbSource.R | 13 CDMConnector-1.7.0/CDMConnector/R/generateCohortSet.R | 116 +- CDMConnector-1.7.0/CDMConnector/R/generateConceptCohortSet.R | 11 CDMConnector-1.7.0/CDMConnector/R/reexports-omopgenerics.R | 23 CDMConnector-1.7.0/CDMConnector/R/summariseQuantile.R | 33 CDMConnector-1.7.0/CDMConnector/R/utils.R | 101 +- CDMConnector-1.7.0/CDMConnector/R/validate.R | 71 - CDMConnector-1.7.0/CDMConnector/R/zzz-deprecated.R | 36 CDMConnector-1.7.0/CDMConnector/inst/cohortsNonUTF8 |only CDMConnector-1.7.0/CDMConnector/inst/doc/a01_getting-started.R | 16 CDMConnector-1.7.0/CDMConnector/inst/doc/a01_getting-started.html | 356 +++---- CDMConnector-1.7.0/CDMConnector/inst/doc/a02_cohorts.R | 4 CDMConnector-1.7.0/CDMConnector/inst/doc/a02_cohorts.html | 381 +++---- CDMConnector-1.7.0/CDMConnector/inst/doc/a04_DBI_connection_examples.R | 145 +- CDMConnector-1.7.0/CDMConnector/inst/doc/a04_DBI_connection_examples.Rmd | 59 - CDMConnector-1.7.0/CDMConnector/inst/doc/a04_DBI_connection_examples.html | 57 - CDMConnector-1.7.0/CDMConnector/inst/doc/a05_cdm_reference_backends.R | 106 +- CDMConnector-1.7.0/CDMConnector/inst/doc/a06_using_cdm_attributes.R | 28 CDMConnector-1.7.0/CDMConnector/inst/doc/a06_using_cdm_attributes.html | 13 CDMConnector-1.7.0/CDMConnector/man/appendPermanent.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/assertTables.Rd |only CDMConnector-1.7.0/CDMConnector/man/assert_write_schema.Rd | 3 CDMConnector-1.7.0/CDMConnector/man/benchmarkCDMConnector.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/cdmCon.Rd | 8 CDMConnector-1.7.0/CDMConnector/man/cdmFlatten.Rd | 6 CDMConnector-1.7.0/CDMConnector/man/cdmFromCon.Rd |only CDMConnector-1.7.0/CDMConnector/man/cdmFromEnvironment.Rd |only CDMConnector-1.7.0/CDMConnector/man/cdmFromFiles.Rd |only CDMConnector-1.7.0/CDMConnector/man/cdmSample.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/cdmSelectTbl.Rd |only CDMConnector-1.7.0/CDMConnector/man/cdmSubset.Rd | 6 CDMConnector-1.7.0/CDMConnector/man/cdmSubsetCohort.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/cdmWriteSchema.Rd | 8 CDMConnector-1.7.0/CDMConnector/man/cdm_from_tables.Rd | 6 CDMConnector-1.7.0/CDMConnector/man/cdm_name.Rd |only CDMConnector-1.7.0/CDMConnector/man/cohortAttrition.Rd | 2 CDMConnector-1.7.0/CDMConnector/man/cohortErafy.Rd |only CDMConnector-1.7.0/CDMConnector/man/cohortSet.Rd | 2 CDMConnector-1.7.0/CDMConnector/man/cohortUnion.Rd |only CDMConnector-1.7.0/CDMConnector/man/cohort_count.Rd | 8 CDMConnector-1.7.0/CDMConnector/man/computeQuery.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/copyCdmTo.Rd |only CDMConnector-1.7.0/CDMConnector/man/dbms.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/eunomiaDir.Rd | 16 CDMConnector-1.7.0/CDMConnector/man/eunomiaIsAvailable.Rd |only CDMConnector-1.7.0/CDMConnector/man/exampleDatasets.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/generateCohortSet.Rd | 9 CDMConnector-1.7.0/CDMConnector/man/intersectCohorts.Rd |only CDMConnector-1.7.0/CDMConnector/man/listTables.Rd |only CDMConnector-1.7.0/CDMConnector/man/new_generated_cohort_set.Rd | 10 CDMConnector-1.7.0/CDMConnector/man/readCohortSet.Rd |only CDMConnector-1.7.0/CDMConnector/man/record_cohort_attrition.Rd |only CDMConnector-1.7.0/CDMConnector/man/reexports.Rd | 6 CDMConnector-1.7.0/CDMConnector/man/requireEunomia.Rd | 2 CDMConnector-1.7.0/CDMConnector/man/snapshot.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/stow.Rd | 6 CDMConnector-1.7.0/CDMConnector/man/summariseQuantile.Rd |only CDMConnector-1.7.0/CDMConnector/man/tblGroup.Rd |only CDMConnector-1.7.0/CDMConnector/man/unionCohorts.Rd |only CDMConnector-1.7.0/CDMConnector/man/unique_table_name.Rd |only CDMConnector-1.7.0/CDMConnector/man/validateCdm.Rd |only CDMConnector-1.7.0/CDMConnector/man/version.Rd | 4 CDMConnector-1.7.0/CDMConnector/tests/testthat/old_tests/test-02-db-cdm.R | 50 - CDMConnector-1.7.0/CDMConnector/tests/testthat/old_tests/test-cdm.R | 152 +-- CDMConnector-1.7.0/CDMConnector/tests/testthat/old_tests/test-db-omopgenerics.R | 4 CDMConnector-1.7.0/CDMConnector/tests/testthat/old_tests/test-summariseQuantile.R | 80 - CDMConnector-1.7.0/CDMConnector/tests/testthat/setup.R | 60 - CDMConnector-1.7.0/CDMConnector/tests/testthat/test-01-db-DBI.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-02-db-cdm.R | 57 - CDMConnector-1.7.0/CDMConnector/tests/testthat/test-03-db-generateCohortSet.R | 77 - CDMConnector-1.7.0/CDMConnector/tests/testthat/test-04-db-generateConceptCohortSet.R | 136 +- CDMConnector-1.7.0/CDMConnector/tests/testthat/test-05-db-cohort_ddl.R | 8 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-06-db-compute.R | 12 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-07-db-dateadd.R | 77 - CDMConnector-1.7.0/CDMConnector/tests/testthat/test-08-db-casing.R | 2 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-09-db-copy_cdm_to.R | 30 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-10-db-summariseQuantile.R | 18 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-11-cdm_tranformations.R | 10 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-12-db-dplyr.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-13-db-custom_cohort_creation.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-14-db-cohortTransformations.R | 18 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-15-db-benchmarkCDMConnector.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-16-db-dbSource.R | 23 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-17-db-generic-bind.R | 10 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-18-db-newGeneratedCohortSet.R | 28 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-Eunomia.R | 36 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-cohort-reconnect.R | 16 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-benchmarkCDMConnector.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-dplyr.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-example-analysis.R | 24 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-in_schema.R | 39 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-recordCohortAttrition.R | 16 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-sample.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-temp-tables.R | 8 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-utils.R | 24 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-write_schema_with_database.R | 2 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-deprecations.R | 4 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-local_cdm.R | 18 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-memory-issue.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-omopgenerics.R |only CDMConnector-1.7.0/CDMConnector/tests/testthat/test-pool.R | 8 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-readCohortSet.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-write_prefix.r | 2 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-write_prefix_cohort_generation_snowflake.R | 12 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-zzz-DBI.R | 6 CDMConnector-1.7.0/CDMConnector/vignettes/a04_DBI_connection_examples.Rmd | 59 - 140 files changed, 2198 insertions(+), 1745 deletions(-)
Title: Various Non-Additive Models for Genetic Associations
Description: The goal of 'gnonadd' is to simplify workflows in the analysis of non-additive effects of sequence variants. This includes variance effects (Ivarsdottir et. al (2017) <doi:10.1038/ng.3928>), correlation effects, interaction effects and dominance effects. The package also includes convenience functions for visualization.
Author: Audunn S. Snaebjarnarson [aut, cre, ctb],
Gudmundur Einarsson [aut, ctb],
Daniel F. Gudbjartsson [aut, ctb],
deCODE Genetics/AMGEN [cph, fnd]
Maintainer: Audunn S. Snaebjarnarson <audunn.snaebjarnarson@decode.is>
Diff between gnonadd versions 1.0.2 dated 2023-09-22 and 1.0.3 dated 2024-12-19
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/Variance_summary_stats.R | 2 +- R/variance_continuous_conditional.R | 4 ++-- README.md | 31 ++++++++++++++++++------------- 6 files changed, 35 insertions(+), 25 deletions(-)
Title: Run Predictions Inside the Database
Description: It parses a fitted 'R' model object, and returns a formula in
'Tidy Eval' code that calculates the predictions. It works with
several databases back-ends because it leverages 'dplyr' and 'dbplyr'
for the final 'SQL' translation of the algorithm. It currently
supports lm(), glm(), randomForest(), ranger(), earth(),
xgb.Booster.complete(), cubist(), and ctree() models.
Author: Emil Hvitfeldt [aut, cre],
Edgar Ruiz [aut],
Max Kuhn [aut]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between tidypredict versions 0.5 dated 2023-01-18 and 0.5.1 dated 2024-12-19
tidypredict-0.5.1/tidypredict/DESCRIPTION | 32 tidypredict-0.5.1/tidypredict/MD5 | 161 +-- tidypredict-0.5.1/tidypredict/NAMESPACE | 2 tidypredict-0.5.1/tidypredict/NEWS.md | 6 tidypredict-0.5.1/tidypredict/R/acceptable.R | 9 tidypredict-0.5.1/tidypredict/R/as-parsed-model.R | 4 tidypredict-0.5.1/tidypredict/R/model-cubist.R | 4 tidypredict-0.5.1/tidypredict/R/model-earth.R | 97 +- tidypredict-0.5.1/tidypredict/R/model-glm.R |only tidypredict-0.5.1/tidypredict/R/model-lm.R | 33 tidypredict-0.5.1/tidypredict/R/model-partykit.R | 111 ++ tidypredict-0.5.1/tidypredict/R/model-ranger.R | 17 tidypredict-0.5.1/tidypredict/R/model-rf.R | 13 tidypredict-0.5.1/tidypredict/R/model-xgboost.R | 58 + tidypredict-0.5.1/tidypredict/R/predict-column.R | 2 tidypredict-0.5.1/tidypredict/R/predict-fit.R | 2 tidypredict-0.5.1/tidypredict/R/predict-interval.R | 4 tidypredict-0.5.1/tidypredict/R/tidymodels.R | 10 tidypredict-0.5.1/tidypredict/R/tidypredict-package.R |only tidypredict-0.5.1/tidypredict/R/tidypredict_test.R |only tidypredict-0.5.1/tidypredict/README.md | 84 - tidypredict-0.5.1/tidypredict/build/vignette.rds |binary tidypredict-0.5.1/tidypredict/inst/doc/cubist.R | 2 tidypredict-0.5.1/tidypredict/inst/doc/cubist.Rmd | 18 tidypredict-0.5.1/tidypredict/inst/doc/cubist.html | 182 +-- tidypredict-0.5.1/tidypredict/inst/doc/glm.R | 6 tidypredict-0.5.1/tidypredict/inst/doc/glm.Rmd | 6 tidypredict-0.5.1/tidypredict/inst/doc/glm.html | 106 +- tidypredict-0.5.1/tidypredict/inst/doc/lm.R | 6 tidypredict-0.5.1/tidypredict/inst/doc/lm.Rmd | 4 tidypredict-0.5.1/tidypredict/inst/doc/lm.html | 192 ++-- tidypredict-0.5.1/tidypredict/inst/doc/mars.R | 5 tidypredict-0.5.1/tidypredict/inst/doc/mars.Rmd | 21 tidypredict-0.5.1/tidypredict/inst/doc/mars.html | 241 ++--- tidypredict-0.5.1/tidypredict/inst/doc/non-r.R | 2 tidypredict-0.5.1/tidypredict/inst/doc/non-r.html | 178 +-- tidypredict-0.5.1/tidypredict/inst/doc/ranger.R | 4 tidypredict-0.5.1/tidypredict/inst/doc/ranger.Rmd | 4 tidypredict-0.5.1/tidypredict/inst/doc/ranger.html | 112 +- tidypredict-0.5.1/tidypredict/inst/doc/regression.R | 4 tidypredict-0.5.1/tidypredict/inst/doc/rf.R | 4 tidypredict-0.5.1/tidypredict/inst/doc/rf.Rmd | 4 tidypredict-0.5.1/tidypredict/inst/doc/rf.html | 114 +- tidypredict-0.5.1/tidypredict/inst/doc/save.R | 28 tidypredict-0.5.1/tidypredict/inst/doc/save.html | 136 +- tidypredict-0.5.1/tidypredict/inst/doc/sql.R | 36 tidypredict-0.5.1/tidypredict/inst/doc/sql.Rmd | 32 tidypredict-0.5.1/tidypredict/inst/doc/sql.html | 225 ++-- tidypredict-0.5.1/tidypredict/inst/doc/tree.R | 4 tidypredict-0.5.1/tidypredict/inst/doc/xgboost.R | 6 tidypredict-0.5.1/tidypredict/inst/doc/xgboost.Rmd | 20 tidypredict-0.5.1/tidypredict/inst/doc/xgboost.html | 468 +++++----- tidypredict-0.5.1/tidypredict/man/dot-extract_partykit_classprob.Rd |only tidypredict-0.5.1/tidypredict/man/dot-extract_xgb_trees.Rd |only tidypredict-0.5.1/tidypredict/man/figures/logo.png |binary tidypredict-0.5.1/tidypredict/man/knit_print.tidypredict_test.Rd | 2 tidypredict-0.5.1/tidypredict/man/print.tidypredict_test.Rd | 2 tidypredict-0.5.1/tidypredict/man/tidypredict-package.Rd | 5 tidypredict-0.5.1/tidypredict/man/tidypredict_test.Rd | 2 tidypredict-0.5.1/tidypredict/tests/testthat/_snaps/model-cubist.md |only tidypredict-0.5.1/tidypredict/tests/testthat/_snaps/model-earth.md |only tidypredict-0.5.1/tidypredict/tests/testthat/_snaps/model-glm.md |only tidypredict-0.5.1/tidypredict/tests/testthat/_snaps/model-lm.md |only tidypredict-0.5.1/tidypredict/tests/testthat/_snaps/model-partykit.md |only tidypredict-0.5.1/tidypredict/tests/testthat/_snaps/model-rf.md |only tidypredict-0.5.1/tidypredict/tests/testthat/_snaps/model-xgboost.md |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-cubist.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-earth.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-glm.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-lm.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-partykit.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-ranger.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-rf.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-xgboost.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-tidypredict_test.R |only tidypredict-0.5.1/tidypredict/vignettes/cubist.Rmd | 18 tidypredict-0.5.1/tidypredict/vignettes/glm.Rmd | 6 tidypredict-0.5.1/tidypredict/vignettes/lm.Rmd | 4 tidypredict-0.5.1/tidypredict/vignettes/mars.Rmd | 21 tidypredict-0.5.1/tidypredict/vignettes/ranger.Rmd | 4 tidypredict-0.5.1/tidypredict/vignettes/rf.Rmd | 4 tidypredict-0.5.1/tidypredict/vignettes/sql.Rmd | 32 tidypredict-0.5.1/tidypredict/vignettes/xgboost.Rmd | 20 tidypredict-0.5/tidypredict/R/test-predictions.R |only tidypredict-0.5/tidypredict/R/tidypredict.R |only tidypredict-0.5/tidypredict/tests/testthat/_snaps/cubist.md |only tidypredict-0.5/tidypredict/tests/testthat/_snaps/earth.md |only tidypredict-0.5/tidypredict/tests/testthat/_snaps/glm.md |only tidypredict-0.5/tidypredict/tests/testthat/_snaps/lm.md |only tidypredict-0.5/tidypredict/tests/testthat/_snaps/party.md |only tidypredict-0.5/tidypredict/tests/testthat/_snaps/rf.md |only tidypredict-0.5/tidypredict/tests/testthat/_snaps/xgboost.md |only tidypredict-0.5/tidypredict/tests/testthat/test-cubist.R |only tidypredict-0.5/tidypredict/tests/testthat/test-earth.R |only tidypredict-0.5/tidypredict/tests/testthat/test-party.R |only tidypredict-0.5/tidypredict/tests/testthat/test-ranger.R |only tidypredict-0.5/tidypredict/tests/testthat/test-rf.R |only tidypredict-0.5/tidypredict/tests/testthat/test-tester.R |only tidypredict-0.5/tidypredict/tests/testthat/test_glm.R |only tidypredict-0.5/tidypredict/tests/testthat/test_lm.R |only tidypredict-0.5/tidypredict/tests/testthat/test_xgboost.R |only 101 files changed, 1523 insertions(+), 1416 deletions(-)
Title: FaaS (Function as a Service) Package
Description: Allows users to create and deploy the workflow with multiple functions
in Function-as-a-Service (FaaS) cloud computing platforms.
The 'FaaSr' package makes it simpler for R developers to use FaaS platforms by providing the following functionality:
1) Parsing and validating a JSON-based payload compliant to 'FaaSr' schema supporting multiple FaaS platforms
2) Invoking user functions written in R in a Docker container (derived from rocker), using a list generated from
the parser as argument
3) Downloading/uploading of files from/to S3 buckets using simple primitives
4) Logging to files in S3 buckets
5) Triggering downstream actions supporting multiple FaaS platforms
6) Generating FaaS-specific API calls to simplify the registering of a user's workflow with a FaaS platform
Supported FaaS platforms:
Apache OpenWhisk <https://openwhisk.apache.org/>
GitHub Actions <https://github.com/features/actions>
Amazon Web Services (AWS) Lambda <https://aws.amazon.com/lambda/>
Support [...truncated...]
Author: Figueiredo Renato [aut, cre, ths, cph]
,
Park Sungjae [aut] ,
Mu Nan [ctb],
Ku Yun-Jung [ctb],
Daneshmand Vahid [ctb],
Thomas R. Quinn [aut],
Carey Cayelan [ctb]
Maintainer: Figueiredo Renato <renato.figueiredo@oregonstate.edu>
Diff between FaaSr versions 1.3.0 dated 2024-06-10 and 1.4.3 dated 2024-12-19
DESCRIPTION | 12 MD5 | 39 +-- NAMESPACE | 1 NEWS.md | 6 R/faasr_abort_on_multiple_invocations.R | 12 R/faasr_check_workflow_cycle.R | 7 R/faasr_client_api_github-actions.R | 73 ++++-- R/faasr_client_tools.R | 16 - R/faasr_get_file.R | 3 R/faasr_init_log_folder.R | 2 R/faasr_lock.R | 2 R/faasr_put_file.R | 5 R/faasr_rank.R |only R/faasr_run_user_function.R | 4 R/faasr_s3_check.R | 35 +- R/faasr_test.R | 2 R/faasr_trigger.R | 387 +++++++++++++++++--------------- README.md | 2 inst/CITATION |only inst/WORDLIST | 2 man/faasr_rank.Rd |only man/faasr_s3_check.Rd | 2 22 files changed, 357 insertions(+), 255 deletions(-)
Title: Dose Response Models for Bayesian Model Averaging
Description: Fits dose-response models utilizing a Bayesian model
averaging approach as outlined in Gould (2019) <doi:10.1002/bimj.201700211>
for both continuous and binary responses. Longitudinal dose-response modeling
is also supported in a Bayesian model averaging framework as outlined in
Payne, Ray, and Thomann (2024)
<doi:10.1080/10543406.2023.2292214>. Functions
for plotting and calculating various posterior quantities
(e.g. posterior mean, quantiles, probability of minimum efficacious dose,
etc.) are also implemented. Copyright Eli Lilly and Company (2019).
Author: Richard Daniel Payne [aut, cre],
William Michael Landau [rev],
Mitch Thomann [rev],
Eli Lilly and Company [cph]
Maintainer: Richard Daniel Payne <paynestatistics@gmail.com>
Diff between dreamer versions 3.1.0 dated 2022-09-01 and 3.2.0 dated 2024-12-19
DESCRIPTION | 24 MD5 | 58 +- NAMESPACE | 122 ++++ NEWS.md | 6 R/assert.R | 30 + R/diagnostics.R | 8 R/dreamer.R | 65 -- R/dreamer_data.R | 2 R/dreamer_mean.R | 16 R/epll.R | 16 R/fit_model.R | 56 +- R/get_extreme.R | 6 R/get_jags_data.R | 28 - R/get_jags_model.R | 58 ++ R/plot.R | 81 +-- R/post_medx.R | 2 R/posterior.R | 10 R/pr_med.R | 4 R/pr_medx.R | 4 R/summary.R | 12 build/vignette.rds |binary inst/doc/dreamer.R | 6 inst/doc/dreamer.html | 963 ++++++++++++++++++++++++--------------- inst/doc/dreamer_method.R | 2 inst/doc/dreamer_method.html | 247 +++++++++- man/dreamerplot.Rd | 2 man/posterior.Rd | 2 tests/testthat/test-assertions.R | 3 tests/testthat/test-plots.R | 8 tests/testthat/test-print.R | 18 30 files changed, 1313 insertions(+), 546 deletions(-)
Title: Analyzing Animal's Rhythmicity
Description: Analyze and visualize the rhythmic behavior of animals using the
degree of functional coupling (See Scheibe (1999) <doi:10.1076/brhm.30.2.216.1420>),
compute and visualize harmonic power, actograms, average activity and diurnality
index.
Author: Hassan-Roland Nasser [aut, cre],
Marie Schneider [aut, ctb],
Joanna Stachowicz [aut, rev],
Christina Umstaetter [aut, ths]
Maintainer: Hassan-Roland Nasser <hassan.nasser@me.com>
Diff between digiRhythm versions 2.3 dated 2024-11-07 and 2.4 dated 2024-12-19
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/daily_average_activity.R | 8 +++++--- inst/doc/Actgram_diurnality_avg_activity.html | 6 +++--- inst/doc/DFC_and_HP_and_changing_plots.html | 4 ++-- inst/doc/Loading_and_preprocessing_data_in_DigiRhythm.html | 6 +++--- inst/doc/Visualisation.html | 4 ++-- 7 files changed, 24 insertions(+), 22 deletions(-)