Title: Read, Write and Edit 'xlsx' Files
Description: Simplifies the creation of 'xlsx' files by
providing a high level interface to writing, styling and editing
worksheets.
Author: Jordan Mark Barbone [aut] ,
Jan Marvin Garbuszus [aut, cre],
Olivier Roy [ctb],
openxlsx authors [cph] ,
Arseny Kapoulkine [ctb, cph]
Maintainer: Jan Marvin Garbuszus <jan.garbuszus@ruhr-uni-bochum.de>
Diff between openxlsx2 versions 1.11 dated 2024-11-14 and 1.12 dated 2024-12-19
DESCRIPTION | 6 MD5 | 156 ++++----- NAMESPACE | 8 NEWS.md | 27 + R/RcppExports.R | 4 R/class-style_mgr.R | 34 +- R/class-workbook-utils.R | 26 + R/class-workbook-wrappers.R | 138 ++++++-- R/class-workbook.R | 425 +++++++++++++++++--------- R/class-worksheet.R | 24 + R/conditional_formatting.R | 2 R/get-named-regions.R | 3 R/helper-functions.R | 200 ++++++++++-- R/openxlsx2-package.R | 12 R/pivot_table.R | 2 R/read.R | 30 - R/utils.R | 13 R/wb_functions.R | 1 R/wb_load.R | 69 +++- R/wb_styles.R | 5 R/write.R | 91 +++-- inst/AUTHORS | 2 inst/WORDLIST | 4 inst/doc/Update-from-openxlsx.html | 5 inst/doc/conditional-formatting.html | 5 inst/doc/openxlsx2.html | 5 inst/doc/openxlsx2_charts_manual.html | 5 inst/doc/openxlsx2_formulas_manual.html | 5 inst/doc/openxlsx2_read_to_df.R | 2 inst/doc/openxlsx2_read_to_df.Rmd | 2 inst/doc/openxlsx2_read_to_df.html | 7 inst/doc/openxlsx2_style_manual.html | 5 man/create_cell_style.Rd | 4 man/create_sparklines.Rd | 32 + man/grouping-wb.Rd | 8 man/properties-wb.Rd | 5 man/waivers.Rd | 2 man/wbWorkbook.Rd | 55 +++ man/wb_add_cell_style.Rd | 4 man/wb_add_data_table.Rd | 3 man/wb_add_slicer.Rd | 3 man/wb_merge_cells.Rd | 11 man/wb_set_bookview.Rd | 38 ++ man/wb_set_header_footer.Rd | 23 + man/wb_workbook.Rd | 3 src/RcppExports.cpp | 34 +- src/helper_functions.cpp | 324 ++++++++++--------- src/load_workbook.cpp | 12 src/openxlsx2.h | 16 src/openxlsx2_types.h | 57 +-- src/pugi.cpp | 81 ++-- src/strings_xml.cpp | 2 src/styles_xml.cpp | 230 +++++++------- src/write_file.cpp | 8 src/xlsb.cpp | 141 ++++---- src/xlsb_funs.h | 194 ++++++----- tests/testthat/test-class-comment.R | 9 tests/testthat/test-class-hyperlink.R | 3 tests/testthat/test-class-workbook-wrappers.R | 12 tests/testthat/test-class-workbook.R | 62 +++ tests/testthat/test-class-worksheet.R | 80 ++++ tests/testthat/test-date_time_conversion.R | 3 tests/testthat/test-deleting_tables.R | 3 tests/testthat/test-fill_merged_cells.R | 12 tests/testthat/test-formulas.R | 12 tests/testthat/test-helper-functions.R | 195 +++++++++++ tests/testthat/test-loading_workbook.R | 23 + tests/testthat/test-loading_workbook_tables.R | 3 tests/testthat/test-outlines.R | 26 + tests/testthat/test-read_from_created_wb.R | 6 tests/testthat/test-read_sources.R | 38 ++ tests/testthat/test-save.R | 5 tests/testthat/test-styles_xml.R | 12 tests/testthat/test-tables.R | 2 tests/testthat/test-wb_functions.R | 22 + tests/testthat/test-wb_styles.R | 12 tests/testthat/test-write.R | 150 ++++++++- tests/testthat/test-writing_posixct.R | 6 vignettes/openxlsx2_read_to_df.Rmd | 2 79 files changed, 2306 insertions(+), 1005 deletions(-)
Title: Summarise Patient-Level Drug Utilisation in Data Mapped to the
OMOP Common Data Model
Description: Summarise patient-level drug utilisation cohorts using data mapped
to the Observational Medical Outcomes Partnership (OMOP) common data model.
New users and prevalent users cohorts can be generated and their
characteristics, indication and drug use summarised.
Author: Marti Catala [aut, cre] ,
Mike Du [ctb] ,
Yuchen Guo [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Xintong Li [ctb] ,
Marta Alcalde-Herraiz [ctb] ,
Nuria Mercade-Besora [aut] ,
Xihang Chen [aut]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between DrugUtilisation versions 0.8.0 dated 2024-12-09 and 0.8.1 dated 2024-12-19
DESCRIPTION | 6 MD5 | 24 NAMESPACE | 1 NEWS.md | 31 R/DrugUtilisation-package.R | 5 R/addIntersect.R | 98 R/summariseDrugRestart.R | 8 R/summariseDrugUtilisation.R | 10 R/summariseIntersect.R | 30 R/summariseProportionOfPatientsCovered.R | 6 inst/doc/create_cohorts.html | 54 inst/doc/drug_utilisation.html | 8713 +++++++++++++++++++++++++------ man/addIndication.Rd | 6 13 files changed, 7373 insertions(+), 1619 deletions(-)
More information about DrugUtilisation at CRAN
Permanent link
Title: Connect to an OMOP Common Data Model
Description: Provides tools for working with observational health data in the
Observational Medical Outcomes Partnership (OMOP) Common Data Model format with a pipe friendly syntax.
Common data model database table references are stored in a single compound object along with metadata.
Author: Adam Black [aut, cre] ,
Artem Gorbachev [aut],
Edward Burn [aut],
Marti Catala Sabate [aut]
Maintainer: Adam Black <black@ohdsi.org>
Diff between CDMConnector versions 1.6.1 dated 2024-11-29 and 1.7.0 dated 2024-12-19
CDMConnector-1.6.1/CDMConnector/man/assert_tables.Rd |only CDMConnector-1.6.1/CDMConnector/man/cdmName.Rd |only CDMConnector-1.6.1/CDMConnector/man/cdm_from_con.Rd |only CDMConnector-1.6.1/CDMConnector/man/cdm_from_environment.Rd |only CDMConnector-1.6.1/CDMConnector/man/cdm_from_files.Rd |only CDMConnector-1.6.1/CDMConnector/man/cdm_select_tbl.Rd |only CDMConnector-1.6.1/CDMConnector/man/cohort_erafy.Rd |only CDMConnector-1.6.1/CDMConnector/man/cohort_union.Rd |only CDMConnector-1.6.1/CDMConnector/man/copy_cdm_to.Rd |only CDMConnector-1.6.1/CDMConnector/man/eunomia_is_available.Rd |only CDMConnector-1.6.1/CDMConnector/man/intersect_cohorts.Rd |only CDMConnector-1.6.1/CDMConnector/man/list_tables.Rd |only CDMConnector-1.6.1/CDMConnector/man/read_cohort_set.Rd |only CDMConnector-1.6.1/CDMConnector/man/recordCohortAttrition.Rd |only CDMConnector-1.6.1/CDMConnector/man/summarise_quantile.Rd |only CDMConnector-1.6.1/CDMConnector/man/tbl_group.Rd |only CDMConnector-1.6.1/CDMConnector/man/union_cohorts.Rd |only CDMConnector-1.6.1/CDMConnector/man/uniqueTableName.Rd |only CDMConnector-1.6.1/CDMConnector/man/validate_cdm.Rd |only CDMConnector-1.6.1/CDMConnector/tests/testthat/test-validate.R |only CDMConnector-1.7.0/CDMConnector/DESCRIPTION | 12 CDMConnector-1.7.0/CDMConnector/MD5 | 237 ++-- CDMConnector-1.7.0/CDMConnector/NAMESPACE | 7 CDMConnector-1.7.0/CDMConnector/NEWS.md | 13 CDMConnector-1.7.0/CDMConnector/R/Eunomia.R | 53 - CDMConnector-1.7.0/CDMConnector/R/benchmarkCDMConnector.R | 43 CDMConnector-1.7.0/CDMConnector/R/cdm.R | 497 ++++------ CDMConnector-1.7.0/CDMConnector/R/cdmSubset.R | 58 - CDMConnector-1.7.0/CDMConnector/R/cdm_from_environment.R | 38 CDMConnector-1.7.0/CDMConnector/R/cohortTransformations.R | 25 CDMConnector-1.7.0/CDMConnector/R/cohort_ddl.R | 14 CDMConnector-1.7.0/CDMConnector/R/compute.R | 42 CDMConnector-1.7.0/CDMConnector/R/copy_cdm_to.R | 14 CDMConnector-1.7.0/CDMConnector/R/dateadd.R | 7 CDMConnector-1.7.0/CDMConnector/R/dbSource.R | 13 CDMConnector-1.7.0/CDMConnector/R/generateCohortSet.R | 116 +- CDMConnector-1.7.0/CDMConnector/R/generateConceptCohortSet.R | 11 CDMConnector-1.7.0/CDMConnector/R/reexports-omopgenerics.R | 23 CDMConnector-1.7.0/CDMConnector/R/summariseQuantile.R | 33 CDMConnector-1.7.0/CDMConnector/R/utils.R | 101 +- CDMConnector-1.7.0/CDMConnector/R/validate.R | 71 - CDMConnector-1.7.0/CDMConnector/R/zzz-deprecated.R | 36 CDMConnector-1.7.0/CDMConnector/inst/cohortsNonUTF8 |only CDMConnector-1.7.0/CDMConnector/inst/doc/a01_getting-started.R | 16 CDMConnector-1.7.0/CDMConnector/inst/doc/a01_getting-started.html | 356 +++---- CDMConnector-1.7.0/CDMConnector/inst/doc/a02_cohorts.R | 4 CDMConnector-1.7.0/CDMConnector/inst/doc/a02_cohorts.html | 381 +++---- CDMConnector-1.7.0/CDMConnector/inst/doc/a04_DBI_connection_examples.R | 145 +- CDMConnector-1.7.0/CDMConnector/inst/doc/a04_DBI_connection_examples.Rmd | 59 - CDMConnector-1.7.0/CDMConnector/inst/doc/a04_DBI_connection_examples.html | 57 - CDMConnector-1.7.0/CDMConnector/inst/doc/a05_cdm_reference_backends.R | 106 +- CDMConnector-1.7.0/CDMConnector/inst/doc/a06_using_cdm_attributes.R | 28 CDMConnector-1.7.0/CDMConnector/inst/doc/a06_using_cdm_attributes.html | 13 CDMConnector-1.7.0/CDMConnector/man/appendPermanent.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/assertTables.Rd |only CDMConnector-1.7.0/CDMConnector/man/assert_write_schema.Rd | 3 CDMConnector-1.7.0/CDMConnector/man/benchmarkCDMConnector.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/cdmCon.Rd | 8 CDMConnector-1.7.0/CDMConnector/man/cdmFlatten.Rd | 6 CDMConnector-1.7.0/CDMConnector/man/cdmFromCon.Rd |only CDMConnector-1.7.0/CDMConnector/man/cdmFromEnvironment.Rd |only CDMConnector-1.7.0/CDMConnector/man/cdmFromFiles.Rd |only CDMConnector-1.7.0/CDMConnector/man/cdmSample.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/cdmSelectTbl.Rd |only CDMConnector-1.7.0/CDMConnector/man/cdmSubset.Rd | 6 CDMConnector-1.7.0/CDMConnector/man/cdmSubsetCohort.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/cdmWriteSchema.Rd | 8 CDMConnector-1.7.0/CDMConnector/man/cdm_from_tables.Rd | 6 CDMConnector-1.7.0/CDMConnector/man/cdm_name.Rd |only CDMConnector-1.7.0/CDMConnector/man/cohortAttrition.Rd | 2 CDMConnector-1.7.0/CDMConnector/man/cohortErafy.Rd |only CDMConnector-1.7.0/CDMConnector/man/cohortSet.Rd | 2 CDMConnector-1.7.0/CDMConnector/man/cohortUnion.Rd |only CDMConnector-1.7.0/CDMConnector/man/cohort_count.Rd | 8 CDMConnector-1.7.0/CDMConnector/man/computeQuery.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/copyCdmTo.Rd |only CDMConnector-1.7.0/CDMConnector/man/dbms.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/eunomiaDir.Rd | 16 CDMConnector-1.7.0/CDMConnector/man/eunomiaIsAvailable.Rd |only CDMConnector-1.7.0/CDMConnector/man/exampleDatasets.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/generateCohortSet.Rd | 9 CDMConnector-1.7.0/CDMConnector/man/intersectCohorts.Rd |only CDMConnector-1.7.0/CDMConnector/man/listTables.Rd |only CDMConnector-1.7.0/CDMConnector/man/new_generated_cohort_set.Rd | 10 CDMConnector-1.7.0/CDMConnector/man/readCohortSet.Rd |only CDMConnector-1.7.0/CDMConnector/man/record_cohort_attrition.Rd |only CDMConnector-1.7.0/CDMConnector/man/reexports.Rd | 6 CDMConnector-1.7.0/CDMConnector/man/requireEunomia.Rd | 2 CDMConnector-1.7.0/CDMConnector/man/snapshot.Rd | 4 CDMConnector-1.7.0/CDMConnector/man/stow.Rd | 6 CDMConnector-1.7.0/CDMConnector/man/summariseQuantile.Rd |only CDMConnector-1.7.0/CDMConnector/man/tblGroup.Rd |only CDMConnector-1.7.0/CDMConnector/man/unionCohorts.Rd |only CDMConnector-1.7.0/CDMConnector/man/unique_table_name.Rd |only CDMConnector-1.7.0/CDMConnector/man/validateCdm.Rd |only CDMConnector-1.7.0/CDMConnector/man/version.Rd | 4 CDMConnector-1.7.0/CDMConnector/tests/testthat/old_tests/test-02-db-cdm.R | 50 - CDMConnector-1.7.0/CDMConnector/tests/testthat/old_tests/test-cdm.R | 152 +-- CDMConnector-1.7.0/CDMConnector/tests/testthat/old_tests/test-db-omopgenerics.R | 4 CDMConnector-1.7.0/CDMConnector/tests/testthat/old_tests/test-summariseQuantile.R | 80 - CDMConnector-1.7.0/CDMConnector/tests/testthat/setup.R | 60 - CDMConnector-1.7.0/CDMConnector/tests/testthat/test-01-db-DBI.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-02-db-cdm.R | 57 - CDMConnector-1.7.0/CDMConnector/tests/testthat/test-03-db-generateCohortSet.R | 77 - CDMConnector-1.7.0/CDMConnector/tests/testthat/test-04-db-generateConceptCohortSet.R | 136 +- CDMConnector-1.7.0/CDMConnector/tests/testthat/test-05-db-cohort_ddl.R | 8 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-06-db-compute.R | 12 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-07-db-dateadd.R | 77 - CDMConnector-1.7.0/CDMConnector/tests/testthat/test-08-db-casing.R | 2 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-09-db-copy_cdm_to.R | 30 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-10-db-summariseQuantile.R | 18 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-11-cdm_tranformations.R | 10 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-12-db-dplyr.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-13-db-custom_cohort_creation.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-14-db-cohortTransformations.R | 18 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-15-db-benchmarkCDMConnector.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-16-db-dbSource.R | 23 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-17-db-generic-bind.R | 10 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-18-db-newGeneratedCohortSet.R | 28 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-Eunomia.R | 36 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-cohort-reconnect.R | 16 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-benchmarkCDMConnector.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-dplyr.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-example-analysis.R | 24 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-in_schema.R | 39 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-recordCohortAttrition.R | 16 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-sample.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-temp-tables.R | 8 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-utils.R | 24 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-db-write_schema_with_database.R | 2 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-deprecations.R | 4 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-local_cdm.R | 18 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-memory-issue.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-omopgenerics.R |only CDMConnector-1.7.0/CDMConnector/tests/testthat/test-pool.R | 8 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-readCohortSet.R | 6 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-write_prefix.r | 2 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-write_prefix_cohort_generation_snowflake.R | 12 CDMConnector-1.7.0/CDMConnector/tests/testthat/test-zzz-DBI.R | 6 CDMConnector-1.7.0/CDMConnector/vignettes/a04_DBI_connection_examples.Rmd | 59 - 140 files changed, 2198 insertions(+), 1745 deletions(-)
Title: Various Non-Additive Models for Genetic Associations
Description: The goal of 'gnonadd' is to simplify workflows in the analysis of non-additive effects of sequence variants. This includes variance effects (Ivarsdottir et. al (2017) <doi:10.1038/ng.3928>), correlation effects, interaction effects and dominance effects. The package also includes convenience functions for visualization.
Author: Audunn S. Snaebjarnarson [aut, cre, ctb],
Gudmundur Einarsson [aut, ctb],
Daniel F. Gudbjartsson [aut, ctb],
deCODE Genetics/AMGEN [cph, fnd]
Maintainer: Audunn S. Snaebjarnarson <audunn.snaebjarnarson@decode.is>
Diff between gnonadd versions 1.0.2 dated 2023-09-22 and 1.0.3 dated 2024-12-19
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 5 +++++ R/Variance_summary_stats.R | 2 +- R/variance_continuous_conditional.R | 4 ++-- README.md | 31 ++++++++++++++++++------------- 6 files changed, 35 insertions(+), 25 deletions(-)
Title: Run Predictions Inside the Database
Description: It parses a fitted 'R' model object, and returns a formula in
'Tidy Eval' code that calculates the predictions. It works with
several databases back-ends because it leverages 'dplyr' and 'dbplyr'
for the final 'SQL' translation of the algorithm. It currently
supports lm(), glm(), randomForest(), ranger(), earth(),
xgb.Booster.complete(), cubist(), and ctree() models.
Author: Emil Hvitfeldt [aut, cre],
Edgar Ruiz [aut],
Max Kuhn [aut]
Maintainer: Emil Hvitfeldt <emil.hvitfeldt@posit.co>
Diff between tidypredict versions 0.5 dated 2023-01-18 and 0.5.1 dated 2024-12-19
tidypredict-0.5.1/tidypredict/DESCRIPTION | 32 tidypredict-0.5.1/tidypredict/MD5 | 161 +-- tidypredict-0.5.1/tidypredict/NAMESPACE | 2 tidypredict-0.5.1/tidypredict/NEWS.md | 6 tidypredict-0.5.1/tidypredict/R/acceptable.R | 9 tidypredict-0.5.1/tidypredict/R/as-parsed-model.R | 4 tidypredict-0.5.1/tidypredict/R/model-cubist.R | 4 tidypredict-0.5.1/tidypredict/R/model-earth.R | 97 +- tidypredict-0.5.1/tidypredict/R/model-glm.R |only tidypredict-0.5.1/tidypredict/R/model-lm.R | 33 tidypredict-0.5.1/tidypredict/R/model-partykit.R | 111 ++ tidypredict-0.5.1/tidypredict/R/model-ranger.R | 17 tidypredict-0.5.1/tidypredict/R/model-rf.R | 13 tidypredict-0.5.1/tidypredict/R/model-xgboost.R | 58 + tidypredict-0.5.1/tidypredict/R/predict-column.R | 2 tidypredict-0.5.1/tidypredict/R/predict-fit.R | 2 tidypredict-0.5.1/tidypredict/R/predict-interval.R | 4 tidypredict-0.5.1/tidypredict/R/tidymodels.R | 10 tidypredict-0.5.1/tidypredict/R/tidypredict-package.R |only tidypredict-0.5.1/tidypredict/R/tidypredict_test.R |only tidypredict-0.5.1/tidypredict/README.md | 84 - tidypredict-0.5.1/tidypredict/build/vignette.rds |binary tidypredict-0.5.1/tidypredict/inst/doc/cubist.R | 2 tidypredict-0.5.1/tidypredict/inst/doc/cubist.Rmd | 18 tidypredict-0.5.1/tidypredict/inst/doc/cubist.html | 182 +-- tidypredict-0.5.1/tidypredict/inst/doc/glm.R | 6 tidypredict-0.5.1/tidypredict/inst/doc/glm.Rmd | 6 tidypredict-0.5.1/tidypredict/inst/doc/glm.html | 106 +- tidypredict-0.5.1/tidypredict/inst/doc/lm.R | 6 tidypredict-0.5.1/tidypredict/inst/doc/lm.Rmd | 4 tidypredict-0.5.1/tidypredict/inst/doc/lm.html | 192 ++-- tidypredict-0.5.1/tidypredict/inst/doc/mars.R | 5 tidypredict-0.5.1/tidypredict/inst/doc/mars.Rmd | 21 tidypredict-0.5.1/tidypredict/inst/doc/mars.html | 241 ++--- tidypredict-0.5.1/tidypredict/inst/doc/non-r.R | 2 tidypredict-0.5.1/tidypredict/inst/doc/non-r.html | 178 +-- tidypredict-0.5.1/tidypredict/inst/doc/ranger.R | 4 tidypredict-0.5.1/tidypredict/inst/doc/ranger.Rmd | 4 tidypredict-0.5.1/tidypredict/inst/doc/ranger.html | 112 +- tidypredict-0.5.1/tidypredict/inst/doc/regression.R | 4 tidypredict-0.5.1/tidypredict/inst/doc/rf.R | 4 tidypredict-0.5.1/tidypredict/inst/doc/rf.Rmd | 4 tidypredict-0.5.1/tidypredict/inst/doc/rf.html | 114 +- tidypredict-0.5.1/tidypredict/inst/doc/save.R | 28 tidypredict-0.5.1/tidypredict/inst/doc/save.html | 136 +- tidypredict-0.5.1/tidypredict/inst/doc/sql.R | 36 tidypredict-0.5.1/tidypredict/inst/doc/sql.Rmd | 32 tidypredict-0.5.1/tidypredict/inst/doc/sql.html | 225 ++-- tidypredict-0.5.1/tidypredict/inst/doc/tree.R | 4 tidypredict-0.5.1/tidypredict/inst/doc/xgboost.R | 6 tidypredict-0.5.1/tidypredict/inst/doc/xgboost.Rmd | 20 tidypredict-0.5.1/tidypredict/inst/doc/xgboost.html | 468 +++++----- tidypredict-0.5.1/tidypredict/man/dot-extract_partykit_classprob.Rd |only tidypredict-0.5.1/tidypredict/man/dot-extract_xgb_trees.Rd |only tidypredict-0.5.1/tidypredict/man/figures/logo.png |binary tidypredict-0.5.1/tidypredict/man/knit_print.tidypredict_test.Rd | 2 tidypredict-0.5.1/tidypredict/man/print.tidypredict_test.Rd | 2 tidypredict-0.5.1/tidypredict/man/tidypredict-package.Rd | 5 tidypredict-0.5.1/tidypredict/man/tidypredict_test.Rd | 2 tidypredict-0.5.1/tidypredict/tests/testthat/_snaps/model-cubist.md |only tidypredict-0.5.1/tidypredict/tests/testthat/_snaps/model-earth.md |only tidypredict-0.5.1/tidypredict/tests/testthat/_snaps/model-glm.md |only tidypredict-0.5.1/tidypredict/tests/testthat/_snaps/model-lm.md |only tidypredict-0.5.1/tidypredict/tests/testthat/_snaps/model-partykit.md |only tidypredict-0.5.1/tidypredict/tests/testthat/_snaps/model-rf.md |only tidypredict-0.5.1/tidypredict/tests/testthat/_snaps/model-xgboost.md |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-cubist.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-earth.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-glm.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-lm.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-partykit.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-ranger.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-rf.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-model-xgboost.R |only tidypredict-0.5.1/tidypredict/tests/testthat/test-tidypredict_test.R |only tidypredict-0.5.1/tidypredict/vignettes/cubist.Rmd | 18 tidypredict-0.5.1/tidypredict/vignettes/glm.Rmd | 6 tidypredict-0.5.1/tidypredict/vignettes/lm.Rmd | 4 tidypredict-0.5.1/tidypredict/vignettes/mars.Rmd | 21 tidypredict-0.5.1/tidypredict/vignettes/ranger.Rmd | 4 tidypredict-0.5.1/tidypredict/vignettes/rf.Rmd | 4 tidypredict-0.5.1/tidypredict/vignettes/sql.Rmd | 32 tidypredict-0.5.1/tidypredict/vignettes/xgboost.Rmd | 20 tidypredict-0.5/tidypredict/R/test-predictions.R |only tidypredict-0.5/tidypredict/R/tidypredict.R |only tidypredict-0.5/tidypredict/tests/testthat/_snaps/cubist.md |only tidypredict-0.5/tidypredict/tests/testthat/_snaps/earth.md |only tidypredict-0.5/tidypredict/tests/testthat/_snaps/glm.md |only tidypredict-0.5/tidypredict/tests/testthat/_snaps/lm.md |only tidypredict-0.5/tidypredict/tests/testthat/_snaps/party.md |only tidypredict-0.5/tidypredict/tests/testthat/_snaps/rf.md |only tidypredict-0.5/tidypredict/tests/testthat/_snaps/xgboost.md |only tidypredict-0.5/tidypredict/tests/testthat/test-cubist.R |only tidypredict-0.5/tidypredict/tests/testthat/test-earth.R |only tidypredict-0.5/tidypredict/tests/testthat/test-party.R |only tidypredict-0.5/tidypredict/tests/testthat/test-ranger.R |only tidypredict-0.5/tidypredict/tests/testthat/test-rf.R |only tidypredict-0.5/tidypredict/tests/testthat/test-tester.R |only tidypredict-0.5/tidypredict/tests/testthat/test_glm.R |only tidypredict-0.5/tidypredict/tests/testthat/test_lm.R |only tidypredict-0.5/tidypredict/tests/testthat/test_xgboost.R |only 101 files changed, 1523 insertions(+), 1416 deletions(-)
Title: FaaS (Function as a Service) Package
Description: Allows users to create and deploy the workflow with multiple functions
in Function-as-a-Service (FaaS) cloud computing platforms.
The 'FaaSr' package makes it simpler for R developers to use FaaS platforms by providing the following functionality:
1) Parsing and validating a JSON-based payload compliant to 'FaaSr' schema supporting multiple FaaS platforms
2) Invoking user functions written in R in a Docker container (derived from rocker), using a list generated from
the parser as argument
3) Downloading/uploading of files from/to S3 buckets using simple primitives
4) Logging to files in S3 buckets
5) Triggering downstream actions supporting multiple FaaS platforms
6) Generating FaaS-specific API calls to simplify the registering of a user's workflow with a FaaS platform
Supported FaaS platforms:
Apache OpenWhisk <https://openwhisk.apache.org/>
GitHub Actions <https://github.com/features/actions>
Amazon Web Services (AWS) Lambda <https://aws.amazon.com/lambda/>
Support [...truncated...]
Author: Figueiredo Renato [aut, cre, ths, cph]
,
Park Sungjae [aut] ,
Mu Nan [ctb],
Ku Yun-Jung [ctb],
Daneshmand Vahid [ctb],
Thomas R. Quinn [aut],
Carey Cayelan [ctb]
Maintainer: Figueiredo Renato <renato.figueiredo@oregonstate.edu>
Diff between FaaSr versions 1.3.0 dated 2024-06-10 and 1.4.3 dated 2024-12-19
DESCRIPTION | 12 MD5 | 39 +-- NAMESPACE | 1 NEWS.md | 6 R/faasr_abort_on_multiple_invocations.R | 12 R/faasr_check_workflow_cycle.R | 7 R/faasr_client_api_github-actions.R | 73 ++++-- R/faasr_client_tools.R | 16 - R/faasr_get_file.R | 3 R/faasr_init_log_folder.R | 2 R/faasr_lock.R | 2 R/faasr_put_file.R | 5 R/faasr_rank.R |only R/faasr_run_user_function.R | 4 R/faasr_s3_check.R | 35 +- R/faasr_test.R | 2 R/faasr_trigger.R | 387 +++++++++++++++++--------------- README.md | 2 inst/CITATION |only inst/WORDLIST | 2 man/faasr_rank.Rd |only man/faasr_s3_check.Rd | 2 22 files changed, 357 insertions(+), 255 deletions(-)
Title: Dose Response Models for Bayesian Model Averaging
Description: Fits dose-response models utilizing a Bayesian model
averaging approach as outlined in Gould (2019) <doi:10.1002/bimj.201700211>
for both continuous and binary responses. Longitudinal dose-response modeling
is also supported in a Bayesian model averaging framework as outlined in
Payne, Ray, and Thomann (2024)
<doi:10.1080/10543406.2023.2292214>. Functions
for plotting and calculating various posterior quantities
(e.g. posterior mean, quantiles, probability of minimum efficacious dose,
etc.) are also implemented. Copyright Eli Lilly and Company (2019).
Author: Richard Daniel Payne [aut, cre],
William Michael Landau [rev],
Mitch Thomann [rev],
Eli Lilly and Company [cph]
Maintainer: Richard Daniel Payne <paynestatistics@gmail.com>
Diff between dreamer versions 3.1.0 dated 2022-09-01 and 3.2.0 dated 2024-12-19
DESCRIPTION | 24 MD5 | 58 +- NAMESPACE | 122 ++++ NEWS.md | 6 R/assert.R | 30 + R/diagnostics.R | 8 R/dreamer.R | 65 -- R/dreamer_data.R | 2 R/dreamer_mean.R | 16 R/epll.R | 16 R/fit_model.R | 56 +- R/get_extreme.R | 6 R/get_jags_data.R | 28 - R/get_jags_model.R | 58 ++ R/plot.R | 81 +-- R/post_medx.R | 2 R/posterior.R | 10 R/pr_med.R | 4 R/pr_medx.R | 4 R/summary.R | 12 build/vignette.rds |binary inst/doc/dreamer.R | 6 inst/doc/dreamer.html | 963 ++++++++++++++++++++++++--------------- inst/doc/dreamer_method.R | 2 inst/doc/dreamer_method.html | 247 +++++++++- man/dreamerplot.Rd | 2 man/posterior.Rd | 2 tests/testthat/test-assertions.R | 3 tests/testthat/test-plots.R | 8 tests/testthat/test-print.R | 18 30 files changed, 1313 insertions(+), 546 deletions(-)
Title: Analyzing Animal's Rhythmicity
Description: Analyze and visualize the rhythmic behavior of animals using the
degree of functional coupling (See Scheibe (1999) <doi:10.1076/brhm.30.2.216.1420>),
compute and visualize harmonic power, actograms, average activity and diurnality
index.
Author: Hassan-Roland Nasser [aut, cre],
Marie Schneider [aut, ctb],
Joanna Stachowicz [aut, rev],
Christina Umstaetter [aut, ths]
Maintainer: Hassan-Roland Nasser <hassan.nasser@me.com>
Diff between digiRhythm versions 2.3 dated 2024-11-07 and 2.4 dated 2024-12-19
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ R/daily_average_activity.R | 8 +++++--- inst/doc/Actgram_diurnality_avg_activity.html | 6 +++--- inst/doc/DFC_and_HP_and_changing_plots.html | 4 ++-- inst/doc/Loading_and_preprocessing_data_in_DigiRhythm.html | 6 +++--- inst/doc/Visualisation.html | 4 ++-- 7 files changed, 24 insertions(+), 22 deletions(-)