Title: Standard and User-Defined RGB Color Spaces, with Conversion
Between RGB and CIE XYZ and Lab
Description: Standard RGB spaces included are sRGB, 'Adobe' RGB, 'ProPhoto' RGB, BT.709, and others. User-defined RGB spaces are also possible. There is partial support for ACES Color workflows.
Author: Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between spacesRGB versions 1.6-1 dated 2024-11-17 and 1.7-0 dated 2025-01-15
spacesRGB-1.6-1/spacesRGB/R/logging.R |only spacesRGB-1.6-1/spacesRGB/R/sysdata.rda |only spacesRGB-1.7-0/spacesRGB/DESCRIPTION | 13 - spacesRGB-1.7-0/spacesRGB/MD5 | 51 ++-- spacesRGB-1.7-0/spacesRGB/NAMESPACE | 2 spacesRGB-1.7-0/spacesRGB/NEWS.md | 10 spacesRGB-1.7-0/spacesRGB/R/ACES.R | 25 +- spacesRGB-1.7-0/spacesRGB/R/HLG.R | 8 spacesRGB-1.7-0/spacesRGB/R/OETFs.R | 36 +-- spacesRGB-1.7-0/spacesRGB/R/OOTF.R | 22 - spacesRGB-1.7-0/spacesRGB/R/PODT.R | 8 spacesRGB-1.7-0/spacesRGB/R/PQ.R | 2 spacesRGB-1.7-0/spacesRGB/R/RRT.R | 72 ++---- spacesRGB-1.7-0/spacesRGB/R/SSTS.R | 41 +-- spacesRGB-1.7-0/spacesRGB/R/TransferFunction.R | 34 +-- spacesRGB-1.7-0/spacesRGB/R/conversion.R | 16 - spacesRGB-1.7-0/spacesRGB/R/datasets.R | 57 ----- spacesRGB-1.7-0/spacesRGB/R/elemTransferFunction.R | 41 +-- spacesRGB-1.7-0/spacesRGB/R/hooks.R | 20 + spacesRGB-1.7-0/spacesRGB/R/installation.R | 106 +++++++-- spacesRGB-1.7-0/spacesRGB/R/logger.R |only spacesRGB-1.7-0/spacesRGB/R/plot.R | 18 - spacesRGB-1.7-0/spacesRGB/R/tonescales.R | 19 - spacesRGB-1.7-0/spacesRGB/R/utils.R | 164 +++++++------- spacesRGB-1.7-0/spacesRGB/inst/doc/spacesRGB-guide.Rmd | 41 +++ spacesRGB-1.7-0/spacesRGB/inst/doc/spacesRGB-guide.html | 180 +++++++++------- spacesRGB-1.7-0/spacesRGB/vignettes/bibliography.bib | 8 spacesRGB-1.7-0/spacesRGB/vignettes/spacesRGB-guide.Rmd | 41 +++ 28 files changed, 599 insertions(+), 436 deletions(-)
Title: Connecting to Various Database Platforms
Description: An R 'DataBase Interface' ('DBI') compatible interface to various database platforms ('PostgreSQL', 'Oracle', 'Microsoft SQL Server',
'Amazon Redshift', 'Microsoft Parallel Database Warehouse', 'IBM Netezza', 'Apache Impala', 'Google BigQuery', 'Snowflake', 'Spark', and 'SQLite'). Also includes support for
fetching data as 'Andromeda' objects. Uses either 'Java Database Connectivity' ('JDBC') or other 'DBI' drivers to connect to databases.
Author: Martijn Schuemie [aut, cre],
Marc Suchard [aut],
Observational Health Data Science and Informatics [cph],
Microsoft Inc. [cph] ,
PostgreSQL Global Development Group [cph] ,
Oracle Inc. [cph] ,
Amazon Inc. [cph]
Maintainer: Martijn Schuemie <schuemie@ohdsi.org>
Diff between DatabaseConnector versions 6.3.2 dated 2023-12-11 and 6.3.3 dated 2025-01-15
DatabaseConnector-6.3.2/DatabaseConnector/build/DatabaseConnector.pdf |only DatabaseConnector-6.3.2/DatabaseConnector/tests/testthat/testthat-problems.rds |only DatabaseConnector-6.3.3/DatabaseConnector/DESCRIPTION | 10 DatabaseConnector-6.3.3/DatabaseConnector/MD5 | 174 ++++------ DatabaseConnector-6.3.3/DatabaseConnector/NAMESPACE | 10 DatabaseConnector-6.3.3/DatabaseConnector/NEWS.md | 14 DatabaseConnector-6.3.3/DatabaseConnector/R/Andromeda.R | 2 DatabaseConnector-6.3.3/DatabaseConnector/R/BulkLoad.R | 16 DatabaseConnector-6.3.3/DatabaseConnector/R/Compression.R | 2 DatabaseConnector-6.3.3/DatabaseConnector/R/Connect.R | 2 DatabaseConnector-6.3.3/DatabaseConnector/R/CtasHack.R | 40 ++ DatabaseConnector-6.3.3/DatabaseConnector/R/DBI.R | 2 DatabaseConnector-6.3.3/DatabaseConnector/R/DataHash.R | 4 DatabaseConnector-6.3.3/DatabaseConnector/R/DatabaseConnector.R | 6 DatabaseConnector-6.3.3/DatabaseConnector/R/DbiDateFunctions.R | 2 DatabaseConnector-6.3.3/DatabaseConnector/R/Drivers.R | 68 ++- DatabaseConnector-6.3.3/DatabaseConnector/R/HelperFunctions.R | 2 DatabaseConnector-6.3.3/DatabaseConnector/R/InsertTable.R | 4 DatabaseConnector-6.3.3/DatabaseConnector/R/ListTables.R | 2 DatabaseConnector-6.3.3/DatabaseConnector/R/RStudio.R | 12 DatabaseConnector-6.3.3/DatabaseConnector/R/Sql.R | 2 DatabaseConnector-6.3.3/DatabaseConnector/README.md | 4 DatabaseConnector-6.3.3/DatabaseConnector/build/vignette.rds |binary DatabaseConnector-6.3.3/DatabaseConnector/inst/doc/Connecting.R | 53 +-- DatabaseConnector-6.3.3/DatabaseConnector/inst/doc/Connecting.Rmd | 42 ++ DatabaseConnector-6.3.3/DatabaseConnector/inst/doc/Connecting.pdf |binary DatabaseConnector-6.3.3/DatabaseConnector/inst/doc/DbiAndDbplyr.R | 72 ++-- DatabaseConnector-6.3.3/DatabaseConnector/inst/doc/DbiAndDbplyr.pdf |binary DatabaseConnector-6.3.3/DatabaseConnector/inst/doc/Querying.R | 50 +- DatabaseConnector-6.3.3/DatabaseConnector/inst/doc/Querying.pdf |binary DatabaseConnector-6.3.3/DatabaseConnector/man/computeDataHash.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/connect.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/createConnectionDetails.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/dbAppendTable-DatabaseConnectorConnection-character-method.Rd | 24 - DatabaseConnector-6.3.3/DatabaseConnector/man/dbClearResult-DatabaseConnectorDbiResult-method.Rd | 37 +- DatabaseConnector-6.3.3/DatabaseConnector/man/dbClearResult-DatabaseConnectorJdbcResult-method.Rd | 37 +- DatabaseConnector-6.3.3/DatabaseConnector/man/dbColumnInfo-DatabaseConnectorDbiResult-method.Rd | 7 DatabaseConnector-6.3.3/DatabaseConnector/man/dbColumnInfo-DatabaseConnectorJdbcResult-method.Rd | 7 DatabaseConnector-6.3.3/DatabaseConnector/man/dbCreateTable-DatabaseConnectorConnection-method.Rd | 18 - DatabaseConnector-6.3.3/DatabaseConnector/man/dbDisconnect-DatabaseConnectorConnection-method.Rd | 13 DatabaseConnector-6.3.3/DatabaseConnector/man/dbExecute-DatabaseConnectorConnection-character-method.Rd | 23 + DatabaseConnector-6.3.3/DatabaseConnector/man/dbExistsTable-DatabaseConnectorConnection-character-method.Rd | 13 DatabaseConnector-6.3.3/DatabaseConnector/man/dbFetch-DatabaseConnectorDbiResult-method.Rd | 24 - DatabaseConnector-6.3.3/DatabaseConnector/man/dbFetch-DatabaseConnectorJdbcResult-method.Rd | 24 - DatabaseConnector-6.3.3/DatabaseConnector/man/dbGetInfo-DatabaseConnectorConnection-method.Rd | 31 + DatabaseConnector-6.3.3/DatabaseConnector/man/dbGetInfo-DatabaseConnectorDriver-method.Rd | 31 + DatabaseConnector-6.3.3/DatabaseConnector/man/dbGetQuery-DatabaseConnectorConnection-character-method.Rd | 35 +- DatabaseConnector-6.3.3/DatabaseConnector/man/dbGetRowCount-DatabaseConnectorDbiResult-method.Rd | 7 DatabaseConnector-6.3.3/DatabaseConnector/man/dbGetRowCount-DatabaseConnectorJdbcResult-method.Rd | 7 DatabaseConnector-6.3.3/DatabaseConnector/man/dbGetRowsAffected-DatabaseConnectorDbiResult-method.Rd | 16 DatabaseConnector-6.3.3/DatabaseConnector/man/dbGetRowsAffected-DatabaseConnectorJdbcResult-method.Rd | 16 DatabaseConnector-6.3.3/DatabaseConnector/man/dbGetStatement-DatabaseConnectorDbiResult-method.Rd | 11 DatabaseConnector-6.3.3/DatabaseConnector/man/dbGetStatement-DatabaseConnectorJdbcResult-method.Rd | 11 DatabaseConnector-6.3.3/DatabaseConnector/man/dbHasCompleted-DatabaseConnectorDbiResult-method.Rd | 26 + DatabaseConnector-6.3.3/DatabaseConnector/man/dbHasCompleted-DatabaseConnectorJdbcResult-method.Rd | 26 + DatabaseConnector-6.3.3/DatabaseConnector/man/dbIsValid-DatabaseConnectorDbiConnection-method.Rd | 35 +- DatabaseConnector-6.3.3/DatabaseConnector/man/dbIsValid-DatabaseConnectorJdbcConnection-method.Rd | 35 +- DatabaseConnector-6.3.3/DatabaseConnector/man/dbListFields-DatabaseConnectorConnection-character-method.Rd | 13 DatabaseConnector-6.3.3/DatabaseConnector/man/dbListTables-DatabaseConnectorConnection-method.Rd | 17 DatabaseConnector-6.3.3/DatabaseConnector/man/dbReadTable-DatabaseConnectorConnection-character-method.Rd | 20 - DatabaseConnector-6.3.3/DatabaseConnector/man/dbRemoveTable-DatabaseConnectorConnection-ANY-method.Rd | 13 DatabaseConnector-6.3.3/DatabaseConnector/man/dbSendQuery-DatabaseConnectorDbiConnection-character-method.Rd | 32 + DatabaseConnector-6.3.3/DatabaseConnector/man/dbSendQuery-DatabaseConnectorJdbcConnection-character-method.Rd | 32 + DatabaseConnector-6.3.3/DatabaseConnector/man/dbSendStatement-DatabaseConnectorConnection-character-method.Rd | 21 - DatabaseConnector-6.3.3/DatabaseConnector/man/dbWriteTable-DatabaseConnectorConnection-ANY-method.Rd | 15 DatabaseConnector-6.3.3/DatabaseConnector/man/dbms.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/disconnect.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/downloadJdbcDrivers.Rd | 6 DatabaseConnector-6.3.3/DatabaseConnector/man/dropEmulatedTempTables.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/executeSql.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/existsTable.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/getTableNames.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/insertTable.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/jdbcDrivers.Rd | 4 DatabaseConnector-6.3.3/DatabaseConnector/man/lowLevelExecuteSql.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/lowLevelQuerySql.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/lowLevelQuerySqlToAndromeda.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/querySql.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/querySqlToAndromeda.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/renderTranslateExecuteSql.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/renderTranslateQueryApplyBatched.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/renderTranslateQuerySql.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/man/renderTranslateQuerySqlToAndromeda.Rd | 2 DatabaseConnector-6.3.3/DatabaseConnector/tests/testthat/dbplyrTestFunction.R | 15 DatabaseConnector-6.3.3/DatabaseConnector/tests/testthat/setup.R | 30 + DatabaseConnector-6.3.3/DatabaseConnector/tests/testthat/test-fetchResults.R | 2 DatabaseConnector-6.3.3/DatabaseConnector/tests/testthat/test-insertTable.R | 2 DatabaseConnector-6.3.3/DatabaseConnector/tests/testthat/test-sendUpdates.R | 22 - DatabaseConnector-6.3.3/DatabaseConnector/vignettes/Connecting.Rmd | 42 ++ 89 files changed, 953 insertions(+), 480 deletions(-)
More information about DatabaseConnector at CRAN
Permanent link
Title: Applied Statistical Time Series Analysis
Description: Contains data sets and scripts for analyzing time series in both the frequency and time domains including state space modeling as well as supporting the texts Time Series Analysis and Its Applications: With R Examples (5th ed), by R.H. Shumway and D.S. Stoffer. Springer Texts in Statistics, 2025, <https://link.springer.com/book/9783031705830>, and Time Series: A Data Analysis Approach Using R. Chapman-Hall, 2019, <DOI:10.1201/9780429273285>.
Author: David Stoffer [aut, cre],
Nicky Poison [ctb, mus, spy]
Maintainer: David Stoffer <stoffer@pitt.edu>
Diff between astsa versions 2.1 dated 2024-01-10 and 2.2 dated 2025-01-15
astsa-2.1/astsa/R/xEM0.R |only astsa-2.1/astsa/R/xEM1.R |only astsa-2.1/astsa/R/xKfilter0.R |only astsa-2.1/astsa/R/xKfilter1.R |only astsa-2.1/astsa/R/xKfilter2.R |only astsa-2.1/astsa/R/xKsmooth0.R |only astsa-2.1/astsa/R/xKsmooth1.R |only astsa-2.1/astsa/R/xKsmooth2.R |only astsa-2.1/astsa/R/xSVfilter.R |only astsa-2.1/astsa/data/xA_readme.rda |only astsa-2.1/astsa/data/xglobtemp.rda |only astsa-2.1/astsa/data/xglobtempl.rda |only astsa-2.1/astsa/data/xgtemp.rda |only astsa-2.1/astsa/data/xgtemp2.rda |only astsa-2.1/astsa/man/xA_readme.Rd |only astsa-2.1/astsa/man/xEM0.Rd |only astsa-2.1/astsa/man/xEM1.Rd |only astsa-2.1/astsa/man/xKfilter0.Rd |only astsa-2.1/astsa/man/xKfilter1.Rd |only astsa-2.1/astsa/man/xKfilter2.Rd |only astsa-2.1/astsa/man/xKsmooth0.Rd |only astsa-2.1/astsa/man/xKsmooth1.Rd |only astsa-2.1/astsa/man/xKsmooth2.Rd |only astsa-2.1/astsa/man/xSVfilter.Rd |only astsa-2.1/astsa/man/xglobtemp.Rd |only astsa-2.1/astsa/man/xglobtempl.Rd |only astsa-2.1/astsa/man/xgtemp.Rd |only astsa-2.1/astsa/man/xgtemp2.Rd |only astsa-2.2/astsa/DESCRIPTION | 22 ++++--- astsa-2.2/astsa/MD5 | 108 ++++++++++++++--------------------- astsa-2.2/astsa/R/QQnorm.R |only astsa-2.2/astsa/R/ar.boot.r | 1 astsa-2.2/astsa/R/arma.spec.R | 11 +++ astsa-2.2/astsa/R/dna2vector.R | 4 - astsa-2.2/astsa/R/lag1.plot.R | 23 +++++-- astsa-2.2/astsa/R/lag2.plot.R | 20 ++++-- astsa-2.2/astsa/R/mvspec.R | 17 +++-- astsa-2.2/astsa/R/pre.white.R |only astsa-2.2/astsa/R/sarima.R | 88 ++++++++++++---------------- astsa-2.2/astsa/R/sarima.for.R | 6 - astsa-2.2/astsa/R/test.linear.R | 2 astsa-2.2/astsa/R/trend.R | 12 ++- astsa-2.2/astsa/R/tsplot.R | 26 +++++++- astsa-2.2/astsa/README.md | 39 ++++++++++-- astsa-2.2/astsa/build/partial.rdb |binary astsa-2.2/astsa/data/gtemp.month.rda |only astsa-2.2/astsa/data/lap.xts.rda |only astsa-2.2/astsa/man/EQcount.Rd | 2 astsa-2.2/astsa/man/GDP23.Rd | 2 astsa-2.2/astsa/man/GNP23.Rd | 2 astsa-2.2/astsa/man/QQnorm.Rd |only astsa-2.2/astsa/man/arma.spec.Rd | 6 - astsa-2.2/astsa/man/astsa-package.Rd | 34 ++++++++--- astsa-2.2/astsa/man/astsa.col.Rd | 7 +- astsa-2.2/astsa/man/cmort.Rd | 2 astsa-2.2/astsa/man/dna2vector.Rd | 2 astsa-2.2/astsa/man/gdp.Rd | 4 - astsa-2.2/astsa/man/gnp.Rd | 4 - astsa-2.2/astsa/man/gtemp.month.Rd |only astsa-2.2/astsa/man/lag1.plot.Rd | 15 +++- astsa-2.2/astsa/man/lag2.plot.Rd | 15 +++- astsa-2.2/astsa/man/lap.Rd | 3 astsa-2.2/astsa/man/lap.xts.Rd |only astsa-2.2/astsa/man/mvspec.Rd | 16 ++--- astsa-2.2/astsa/man/part.Rd | 2 astsa-2.2/astsa/man/pre.white.Rd |only astsa-2.2/astsa/man/sarima.Rd | 4 - astsa-2.2/astsa/man/sarima.for.Rd | 6 + astsa-2.2/astsa/man/spec.ic.Rd | 5 - astsa-2.2/astsa/man/ssm.Rd | 2 astsa-2.2/astsa/man/tempr.Rd | 2 astsa-2.2/astsa/man/trend.Rd | 7 +- astsa-2.2/astsa/man/tsplot.Rd | 74 ++++++++++++++++++----- 73 files changed, 366 insertions(+), 229 deletions(-)
Title: Modeling and Forecasting Visitor Counts Using Social Media
Description: Performs modeling and forecasting of park visitor counts
using social media data and (partial) on-site visitor counts.
Specifically, the model is built based on an automatic decomposition
of the trend and seasonal components of the social media-based park visitor counts,
from which short-term forecasts of the visitor counts and percent changes
in the visitor counts can be made. A reference for the underlying model that 'VisitorCounts' uses can be found at
Russell Goebel, Austin Schmaltz, Beth Ann Brackett, Spencer A. Wood, Kimihiro Noguchi (2023) <doi:10.1002/for.2965> .
Author: Robert Bowen [aut, cre],
Russell Goebel [aut],
Beth Ann Brackett [ctb],
Kimihiro Noguchi [aut],
Dylan Way [aut]
Maintainer: Robert Bowen <robertbowen.bham@gmail.com>
Diff between VisitorCounts versions 2.0.2 dated 2024-08-17 and 2.0.3 dated 2025-01-15
VisitorCounts-2.0.2/VisitorCounts/man/plot.visitation_forecast_ensemble.Rd |only VisitorCounts-2.0.3/VisitorCounts/DESCRIPTION | 10 VisitorCounts-2.0.3/VisitorCounts/MD5 | 23 VisitorCounts-2.0.3/VisitorCounts/NAMESPACE | 87 +-- VisitorCounts-2.0.3/VisitorCounts/NEWS.md | 5 VisitorCounts-2.0.3/VisitorCounts/R/methods_plot.R | 273 +++++++++- VisitorCounts-2.0.3/VisitorCounts/inst/doc/VisitorCounts.R | 4 VisitorCounts-2.0.3/VisitorCounts/inst/doc/VisitorCounts.Rmd | 4 VisitorCounts-2.0.3/VisitorCounts/inst/doc/VisitorCounts.html | 60 +- VisitorCounts-2.0.3/VisitorCounts/man/ggplot.decomposition.Rd |only VisitorCounts-2.0.3/VisitorCounts/man/ggplot.visitation_forecast.Rd |only VisitorCounts-2.0.3/VisitorCounts/man/ggplot.visitation_forecast_ensemble.Rd |only VisitorCounts-2.0.3/VisitorCounts/man/ggplot.visitation_model.Rd |only VisitorCounts-2.0.3/VisitorCounts/man/plot.visitation_forecast.Rd | 47 - VisitorCounts-2.0.3/VisitorCounts/vignettes/VisitorCounts.Rmd | 4 15 files changed, 375 insertions(+), 142 deletions(-)
Title: PLINK 2 Binary (.pgen) Reader
Description: A thin wrapper over PLINK 2's core libraries which provides an R
interface for reading .pgen files. A minimal .pvar loader is also
included. Chang et al. (2015) \doi{10.1186/s13742-015-0047-8}.
Author: Christopher Chang [aut, cre],
Eric Biggers [ctb, cph] ,
Yann Collet [ctb] ,
Meta Platforms, Inc. [cph] ,
Evan Nemerson [ctb, cph] ,
Przemyslaw Skibinski [ctb] ,
Nick Terrell [ctb]
Maintainer: Christopher Chang <chrchang@alumni.caltech.edu>
Diff between pgenlibr versions 0.3.7 dated 2024-06-04 and 0.4.0 dated 2025-01-15
pgenlibr-0.3.7/pgenlibr/src/include |only pgenlibr-0.3.7/pgenlibr/src/libdeflate |only pgenlibr-0.3.7/pgenlibr/src/pgenlib_ffi_support.cpp |only pgenlibr-0.3.7/pgenlibr/src/pgenlib_ffi_support.h |only pgenlibr-0.3.7/pgenlibr/src/pvar_ffi_support.cpp |only pgenlibr-0.3.7/pgenlibr/src/pvar_ffi_support.h |only pgenlibr-0.3.7/pgenlibr/src/simde |only pgenlibr-0.3.7/pgenlibr/src/zstd |only pgenlibr-0.4.0/pgenlibr/DESCRIPTION | 8 pgenlibr-0.4.0/pgenlibr/MD5 | 972 ++++++++++---------- pgenlibr-0.4.0/pgenlibr/NAMESPACE | 2 pgenlibr-0.4.0/pgenlibr/NEWS.md | 7 pgenlibr-0.4.0/pgenlibr/R/RcppExports.R | 31 pgenlibr-0.4.0/pgenlibr/cleanup | 1 pgenlibr-0.4.0/pgenlibr/configure.ac | 18 pgenlibr-0.4.0/pgenlibr/inst/include |only pgenlibr-0.4.0/pgenlibr/man/GetVariantChrom.Rd |only pgenlibr-0.4.0/pgenlibr/man/GetVariantPos.Rd |only pgenlibr-0.4.0/pgenlibr/man/NewPvar.Rd | 14 pgenlibr-0.4.0/pgenlibr/man/pgenlibr-package.Rd | 4 pgenlibr-0.4.0/pgenlibr/src/Makevars.in | 12 pgenlibr-0.4.0/pgenlibr/src/Makevars.win | 11 pgenlibr-0.4.0/pgenlibr/src/RcppExports.cpp | 36 pgenlibr-0.4.0/pgenlibr/src/pgenlibr.cpp | 2 pgenlibr-0.4.0/pgenlibr/src/pvar.cpp | 85 + pgenlibr-0.4.0/pgenlibr/src/pvar.h | 8 26 files changed, 681 insertions(+), 530 deletions(-)
Title: Output Space-Filling Design
Description: Methods to generate a design in the input space that sequentially fills the output space of a black-box function. The output space-filling designs are helpful in inverse design or feature-based modeling problems.
See Wang, Shangkun, Adam P. Generale, Surya R. Kalidindi, and V. Roshan Joseph. (2024), Sequential designs for filling output spaces, Technometrics, 66, 65–76. for details. This work is supported by U.S. National Foundation grant CMMI-1921646.
Author: Shangkun Wang [aut, cre],
Roshan Joseph [aut]
Maintainer: Shangkun Wang <sk_wang@gatech.edu>
Diff between OSFD versions 2.0 dated 2025-01-14 and 3.0 dated 2025-01-15
OSFD-2.0/OSFD/man/space_filling_points.Rd |only OSFD-3.0/OSFD/DESCRIPTION | 8 ++++---- OSFD-3.0/OSFD/MD5 | 10 +++++----- OSFD-3.0/OSFD/NAMESPACE | 2 +- OSFD-3.0/OSFD/R/OSFD.R | 23 ++++++++++++++--------- OSFD-3.0/OSFD/man/IOSFD.Rd | 2 +- OSFD-3.0/OSFD/man/spanfill.Rd |only 7 files changed, 25 insertions(+), 20 deletions(-)
Title: Minimal R/Shiny Interface to JavaScript Library 'ECharts'
Description: Deliver the full functionality of 'ECharts' with minimal overhead. 'echarty' users build R lists for 'ECharts' API. Lean set of powerful commands.
Author: Larry Helgason [aut, cre]
Maintainer: Larry Helgason <larry@helgasoft.com>
Diff between echarty versions 1.6.5 dated 2025-01-10 and 1.6.6 dated 2025-01-15
DESCRIPTION | 8 +- MD5 | 22 ++++--- NEWS.md | 2 R/echarty.R | 26 +++----- R/util.R | 18 ++--- tests/testthat/sl.shape.points |only tests/testthat/test-ec.util.R | 70 +++++++++++------------ tests/testthat/test-other.R | 121 ++++++++++++++++++++++++++++------------ tests/testthat/test-presets.R | 32 ++++++---- tests/testthat/test-renderers.R | 23 ++++--- 10 files changed, 194 insertions(+), 128 deletions(-)
Title: Using CF-Compliant Calendars with Climate Projection Data
Description: Support for all calendars as specified in the Climate and Forecast
(CF) Metadata Conventions for climate and forecasting data. The CF Metadata
Conventions is widely used for distributing files with climate observations
or projections, including the Coupled Model Intercomparison Project (CMIP)
data used by climate change scientists and the Intergovernmental Panel on
Climate Change (IPCC). This package specifically allows the user to work
with any of the CF-compliant calendars (many of which are not compliant with
POSIXt). The CF time coordinate is formally defined in the CF Metadata
Conventions document available at <https://cfconventions.org/Data/cf-conventions/cf-conventions-1.12/cf-conventions.html#time-coordinate>.
Author: Patrick Van Laake [aut, cre, cph]
Maintainer: Patrick Van Laake <patrick@vanlaake.net>
Diff between CFtime versions 1.4.1 dated 2024-09-15 and 1.5.0 dated 2025-01-15
CFtime-1.4.1/CFtime/R/CFbounds.R |only CFtime-1.4.1/CFtime/R/CFdatum.R |only CFtime-1.4.1/CFtime/R/CFfactor.R |only CFtime-1.4.1/CFtime/R/CFformat.R |only CFtime-1.4.1/CFtime/R/CFparse.R |only CFtime-1.4.1/CFtime/R/CFutils.R |only CFtime-1.4.1/CFtime/man/CFparse.Rd |only CFtime-1.4.1/CFtime/man/CFtime-class.Rd |only CFtime-1.4.1/CFtime/man/CFtime.Rd |only CFtime-1.4.1/CFtime/man/as.character-CFtime-method.Rd |only CFtime-1.4.1/CFtime/man/cut-CFtime-method.Rd |only CFtime-1.4.1/CFtime/man/equals-CFtime-CFtime-method.Rd |only CFtime-1.4.1/CFtime/man/format-CFtime-method.Rd |only CFtime-1.4.1/CFtime/man/indexOf-ANY-CFtime-method.Rd |only CFtime-1.4.1/CFtime/man/length-CFtime-method.Rd |only CFtime-1.4.1/CFtime/man/plus-CFtime-CFtime-method.Rd |only CFtime-1.4.1/CFtime/man/plus-CFtime-numeric-method.Rd |only CFtime-1.4.1/CFtime/man/range-CFtime-method.Rd |only CFtime-1.5.0/CFtime/DESCRIPTION | 19 CFtime-1.5.0/CFtime/LICENSE | 2 CFtime-1.5.0/CFtime/MD5 | 121 - CFtime-1.5.0/CFtime/NAMESPACE | 26 CFtime-1.5.0/CFtime/NEWS.md | 18 CFtime-1.5.0/CFtime/R/CFCalendar.R |only CFtime-1.5.0/CFtime/R/CFCalendar360.R |only CFtime-1.5.0/CFtime/R/CFCalendar365.R |only CFtime-1.5.0/CFtime/R/CFCalendar366.R |only CFtime-1.5.0/CFtime/R/CFCalendarJulian.R |only CFtime-1.5.0/CFtime/R/CFCalendarProleptic.R |only CFtime-1.5.0/CFtime/R/CFCalendarStandard.R |only CFtime-1.5.0/CFtime/R/CFCalendarTAI.R |only CFtime-1.5.0/CFtime/R/CFCalendarUTC.R |only CFtime-1.5.0/CFtime/R/CFtime-package.R | 33 CFtime-1.5.0/CFtime/R/CFtime.R | 1810 +++++++--------- CFtime-1.5.0/CFtime/R/api.R |only CFtime-1.5.0/CFtime/R/deprecated.R | 20 CFtime-1.5.0/CFtime/R/helpers.R |only CFtime-1.5.0/CFtime/R/zzz.R | 4 CFtime-1.5.0/CFtime/README.md | 113 CFtime-1.5.0/CFtime/TODO | 8 CFtime-1.5.0/CFtime/build/vignette.rds |binary CFtime-1.5.0/CFtime/inst/doc/CFtime.R | 64 CFtime-1.5.0/CFtime/inst/doc/CFtime.Rmd | 292 +- CFtime-1.5.0/CFtime/inst/doc/CFtime.html | 490 ++-- CFtime-1.5.0/CFtime/inst/doc/Conformance.R |only CFtime-1.5.0/CFtime/inst/doc/Conformance.Rmd |only CFtime-1.5.0/CFtime/inst/doc/Conformance.html |only CFtime-1.5.0/CFtime/inst/doc/Processing.R | 30 CFtime-1.5.0/CFtime/inst/doc/Processing.Rmd | 40 CFtime-1.5.0/CFtime/inst/doc/Processing.html | 53 CFtime-1.5.0/CFtime/man/CFCalendar.Rd |only CFtime-1.5.0/CFtime/man/CFCalendar360.Rd |only CFtime-1.5.0/CFtime/man/CFCalendar365.Rd |only CFtime-1.5.0/CFtime/man/CFCalendar366.Rd |only CFtime-1.5.0/CFtime/man/CFCalendarJulian.Rd |only CFtime-1.5.0/CFtime/man/CFCalendarProleptic.Rd |only CFtime-1.5.0/CFtime/man/CFCalendarStandard.Rd |only CFtime-1.5.0/CFtime/man/CFCalendarTAI.Rd |only CFtime-1.5.0/CFtime/man/CFCalendarUTC.Rd |only CFtime-1.5.0/CFtime/man/CFTime.Rd |only CFtime-1.5.0/CFtime/man/CFfactor.Rd | 90 CFtime-1.5.0/CFtime/man/CFfactor_coverage.Rd | 16 CFtime-1.5.0/CFtime/man/CFfactor_units.Rd | 22 CFtime-1.5.0/CFtime/man/CFtime-function.Rd |only CFtime-1.5.0/CFtime/man/CFtime-package.Rd | 33 CFtime-1.5.0/CFtime/man/as.character.CFTime.Rd |only CFtime-1.5.0/CFtime/man/as_timestamp.Rd | 35 CFtime-1.5.0/CFtime/man/bounds.Rd | 28 CFtime-1.5.0/CFtime/man/cut.CFTime.Rd |only CFtime-1.5.0/CFtime/man/deprecated_functions.Rd | 13 CFtime-1.5.0/CFtime/man/equals-.CFTime.Rd |only CFtime-1.5.0/CFtime/man/indexOf.Rd |only CFtime-1.5.0/CFtime/man/is_complete.Rd | 28 CFtime-1.5.0/CFtime/man/length.CFTime.Rd |only CFtime-1.5.0/CFtime/man/month_days.Rd | 35 CFtime-1.5.0/CFtime/man/parse_timestamps.Rd |only CFtime-1.5.0/CFtime/man/plus-.CFTime.Rd |only CFtime-1.5.0/CFtime/man/properties.Rd | 54 CFtime-1.5.0/CFtime/man/range.CFTime.Rd |only CFtime-1.5.0/CFtime/man/slab.Rd | 32 CFtime-1.5.0/CFtime/man/slice.Rd |only CFtime-1.5.0/CFtime/tests/testthat/test-CFbounds.R | 84 CFtime-1.5.0/CFtime/tests/testthat/test-CFformat.R | 39 CFtime-1.5.0/CFtime/tests/testthat/test-CFtime.R | 163 - CFtime-1.5.0/CFtime/tests/testthat/test-parse_deparse.R | 143 - CFtime-1.5.0/CFtime/vignettes/CFtime.Rmd | 292 +- CFtime-1.5.0/CFtime/vignettes/Conformance.Rmd |only CFtime-1.5.0/CFtime/vignettes/Processing.Rmd | 40 88 files changed, 2241 insertions(+), 2049 deletions(-)
Title: Random Walk Covariance Models
Description: Code to facilitate simulation and inference when connectivity is defined by underlying random walks. Methods for spatially-correlated pairwise distance data are especially considered. This provides core code to conduct analyses similar to that in Hanks and Hooten (2013) <doi:10.1080/01621459.2012.724647>.
Author: Ephraim Hanks [aut, cre]
Maintainer: Ephraim Hanks <hanks@psu.edu>
Diff between rwc versions 1.11 dated 2018-06-04 and 1.12 dated 2025-01-15
DESCRIPTION | 16 + MD5 | 20 +- man/cov.from.dist.Rd | 146 ++++++++-------- man/dGenWish.Rd | 220 ++++++++++++------------- man/dist.from.cov.Rd | 138 ++++++++-------- man/get.Phi.Rd | 126 +++++++------- man/get.Q.Rd | 130 +++++++-------- man/get.TL.Rd | 120 ++++++------- man/mcmc.wish.icar.Rd | 430 +++++++++++++++++++++++++------------------------- man/rGenWish.Rd | 158 +++++++++--------- man/rnorm.Q.Rd | 186 ++++++++++----------- 11 files changed, 847 insertions(+), 843 deletions(-)
Title: Clustering in Longitudinal Networks
Description: Stochastic block model used for dynamic graphs represented by Poisson processes.
To model recurrent interaction events in continuous time, an extension of the stochastic block model is proposed where every individual belongs to a latent group and interactions between two individuals follow a conditional inhomogeneous Poisson process with intensity driven by the individuals’ latent groups. The model is shown to be identifiable and its estimation is based on a semiparametric variational expectation-maximization algorithm. Two versions of the method are developed, using either a nonparametric histogram approach (with an adaptive choice of the partition size) or kernel intensity estimators. The number of latent groups can be selected by an integrated classification likelihood criterion.
Y. Baraud and L. Birgé (2009). <doi:10.1007/s00440-007-0126-6>.
C. Biernacki, G. Celeux and G. Govaert (2000). <doi:10.1109/34.865189>.
M. Corneli, P. Latouche and F. Rossi (2016). <doi:10.10 [...truncated...]
Author: Daphne Giorgi [aut, cre],
Catherine Matias [aut],
Tabea Rebafka [aut],
Fanny Villers [aut]
Maintainer: Daphne Giorgi <daphne.giorgi@sorbonne-universite.fr>
Diff between ppsbm versions 0.2.2 dated 2018-03-19 and 1.0.0 dated 2025-01-15
DESCRIPTION | 24 +++- MD5 | 93 ++++++++-------- NAMESPACE | 11 - NEWS.md |only R/auxiliary.R | 53 ++++----- R/data.R | 150 +++++++++++++++++++++++--- R/generator.R | 95 ++++++++-------- R/initialization.R | 174 +++++++++++++++--------------- R/output.R | 239 ++++++++++++++++++++++-------------------- R/vem_dynppsbm.R | 86 +++++++++------ data/generated_sol_hist.rda |binary data/generated_sol_kernel.rda |binary man/ARI.Rd | 7 - man/JEvalMstep.Rd | 1 man/Mstep_hist.Rd | 3 man/Mstep_kernel.Rd | 3 man/VEstep.Rd | 1 man/bootstrap_and_CI.Rd | 61 ++++++---- man/classInd.Rd | 1 man/confidenceInterval.Rd | 31 ----- man/convertGroupPair.Rd | 8 - man/convertNodePair.Rd | 19 +-- man/correctTau.Rd | 1 man/find_ql.Rd | 6 - man/find_ql_diff.Rd | 1 man/generateDynppsbm.Rd | 34 ++--- man/generateDynppsbmConst.Rd | 23 ++-- man/generatePP.Rd | 18 +-- man/generatePPConst.Rd | 16 +- man/generated_Q3.Rd | 50 +++++++- man/generated_Q3_n20.Rd | 49 +++++++- man/generated_sol_hist.Rd | 30 ++++- man/generated_sol_kernel.Rd | 25 +++- man/kernelIntensities.Rd | 42 ++++--- man/listNodePairs.Rd | 2 man/mainVEM.Rd | 72 ++++++++---- man/mainVEMPar.Rd | 17 ++ man/modelSelec_QPlot.Rd | 11 + man/modelSelection_Q.Rd | 54 ++++++--- man/permuteZEst.Rd | 17 -- man/sortIntensities.Rd | 16 +- man/statistics.Rd | 18 +-- man/tauDown_Q.Rd | 20 --- man/tauInitial.Rd | 18 --- man/tauKmeansSbm.Rd | 13 -- man/tauUp_Q.Rd | 20 --- man/tauUpdate.Rd | 5 man/taurhoInitial.Rd | 20 --- 48 files changed, 969 insertions(+), 689 deletions(-)
Title: Common Department for Education Analysis Tasks
Description: Preferred methods for common analytical tasks that are
undertaken across the Department, including number formatting, project
templates and curated reference data.
Author: Cam Race [aut, cre],
Department for Education, England [cph],
Laura Selby [aut],
Adam Robinson [aut],
Jen Machin [ctb],
Jake Tufts [ctb],
Rich Bielby [ctb] ,
Menna Zayed [ctb],
Lauren Snaathorst [ctb]
Maintainer: Cam Race <cameron.race@education.gov.uk>
Diff between dfeR versions 1.0.0 dated 2025-01-13 and 1.0.1 dated 2025-01-15
DESCRIPTION | 17 MD5 | 120 +-- NAMESPACE | 70 - NEWS.md | 206 ++--- R/comma_sep.R | 46 - R/create_project.R | 572 +++++++------- R/dfeR-package.R | 20 R/fetch.R | 290 +++---- R/format.R | 164 ++-- R/get_clean_sql.R | 144 +-- R/get_ons_api_data.R | 298 +++---- R/pretty.R | 832 ++++++++++----------- R/round_five_up.R | 102 +- R/toggle_message.R | 76 - R/z_replace.R | 2 README.md | 2 build/vignette.rds |binary inst/README_template.md | 64 - inst/WORDLIST | 102 +- inst/doc/connecting_to_sql.R | 50 - inst/doc/connecting_to_sql.Rmd | 210 ++--- man/comma_sep.Rd | 50 - man/countries.Rd | 60 - man/dfeR-package.Rd | 83 +- man/fetch.Rd | 90 +- man/fetch_countries.Rd | 86 +- man/fetch_lads.Rd | 102 +- man/fetch_las.Rd | 102 +- man/fetch_regions.Rd | 86 +- man/fetch_wards.Rd | 102 +- man/format_ay.Rd | 64 - man/format_ay_reverse.Rd | 60 - man/format_fy.Rd | 64 - man/format_fy_reverse.Rd | 60 - man/geog_time_identifiers.Rd | 48 - man/get_ons_api_data.Rd | 138 +-- man/ons_geog_shorthands.Rd | 62 - man/pretty_filesize.Rd | 96 +- man/pretty_num.Rd | 186 ++-- man/pretty_num_table.Rd | 142 +-- man/pretty_time_taken.Rd | 100 +- man/regions.Rd | 70 - man/toggle_message.Rd | 82 +- man/wd_pcon_lad_la_rgn_ctry.Rd | 128 +-- man/z_replace.Rd | 112 +- tests/sql_scripts/use_example.sql | 10 tests/testthat/test-data-ons_geog_shorthands.R | 42 - tests/testthat/test-data-regions.R | 36 tests/testthat/test-data-wd_pcon_lad_la_rgn_ctry.R | 114 +- tests/testthat/test-data_countries.R | 36 tests/testthat/test-fetch_countries.R | 14 tests/testthat/test-fetch_lads.R | 88 +- tests/testthat/test-fetch_las.R | 88 +- tests/testthat/test-fetch_pcons.R | 98 +- tests/testthat/test-fetch_regions.R | 14 tests/testthat/test-fetch_wards.R | 14 tests/testthat/test-get_clean_sql.R | 148 +-- tests/testthat/test-pretty_num.R | 88 +- tests/testthat/test-pretty_num_table.R | 244 +++--- tests/testthat/test-z_replace.R | 308 +++---- vignettes/connecting_to_sql.Rmd | 210 ++--- 61 files changed, 3536 insertions(+), 3576 deletions(-)
Title: Fast, Easy, and Visual Bayesian Inference
Description: Accelerate Bayesian analytics workflows in 'R' through interactive modelling,
visualization, and inference. Define probabilistic graphical models using directed
acyclic graphs (DAGs) as a unifying language for business stakeholders, statisticians,
and programmers. This package relies on interfacing with the 'numpyro' python package.
Author: Adam Fleischhacker [aut, cre, cph],
Daniela Dapena [ctb],
Rose Nguyen [ctb],
Jared Sharpe [ctb]
Maintainer: Adam Fleischhacker <ajf@udel.edu>
Diff between causact versions 0.5.5 dated 2024-04-24 and 0.5.7 dated 2025-01-15
DESCRIPTION | 8 LICENSE | 4 MD5 | 42 - NEWS.md | 111 +-- R/install_causact_deps.R | 8 README.md | 20 build/vignette.rds |binary inst/doc/narrative-to-insight-with-causact.html | 708 +++++++++++++++++++++- man/causact-package.Rd | 62 - man/check_r_causact_env.Rd | 22 man/chimpanzeesDF.Rd | 60 - man/dag_greta.Rd | 114 +-- man/dag_numpyro.Rd | 110 +-- man/distributions.Rd | 416 ++++++------- man/figures/chimpsGraphPost-1.png |binary man/figures/gretaPost-1.png |binary man/install_causact_deps.Rd | 60 - man/meaningfulLabels.Rd | 38 - man/schoolsDF.Rd | 42 - tests/testthat.R | 8 vignettes/gretaCardPlot-1.svg | 622 +++++++++---------- vignettes/postCardPlatePlot-1.svg | 766 ++++++++++++------------ 22 files changed, 1958 insertions(+), 1263 deletions(-)
Title: Command Line Tools to Produce Accessible Documents using 'R
Markdown'
Description: Provides functions to produce accessible 'HTML' slides, 'HTML',
'Word' and 'PDF' documents from input 'R markdown' files. Accessible 'PDF'
files are produced only on a 'Windows' Operating System. One aspect of
accessibility is providing a headings structure that is recognised by a
screen reader, providing a navigational tool for a blind or
partially-sighted person. A key aim is to produce documents of different
formats easily from each of a collection of 'R markdown' source files.
Input 'R markdown' files are rendered using the render() function from the
'rmarkdown' package <https://cran.r-project.org/package=rmarkdown>. A 'zip'
file containing multiple output files can be produced from one function
call. A user-supplied template 'Word' document can be used to determine the
formatting of an output 'Word' document. Accessible 'PDF' files are
produced from 'Word' documents using 'OfficeToPDF'
<https://github.com/cognidox/OfficeToPDF>. A convenience function,
install_otp() is [...truncated...]
Author: Paul J. Northrop [aut, cre, cph]
Maintainer: Paul J. Northrop <p.northrop@ucl.ac.uk>
Diff between accessr versions 1.0.1 dated 2024-04-28 and 1.1.1 dated 2025-01-15
accessr-1.0.1/accessr/inst/examples/accessr_html.zip |only accessr-1.0.1/accessr/inst/examples/accessr_ioslides.zip |only accessr-1.0.1/accessr/inst/examples/accessr_slidy.zip |only accessr-1.0.1/accessr/inst/examples/example.html |only accessr-1.0.1/accessr/inst/examples/example.zip |only accessr-1.1.1/accessr/DESCRIPTION | 10 +++---- accessr-1.1.1/accessr/MD5 | 20 ++++++--------- accessr-1.1.1/accessr/NEWS.md |only accessr-1.1.1/accessr/R/rmd2word.R | 16 +++++++++--- accessr-1.1.1/accessr/R/word_figures.R | 6 +++- accessr-1.1.1/accessr/README.md | 12 +++++++++ accessr-1.1.1/accessr/inst/examples/example.Rmd | 4 +-- accessr-1.1.1/accessr/inst/examples/example.pptx |only accessr-1.1.1/accessr/inst/examples/template.pptx |only accessr-1.1.1/accessr/man/rmd2word.Rd | 9 ++++++ 15 files changed, 54 insertions(+), 23 deletions(-)
Title: Graphs and Tables for OMOP Results
Description: Provides methods to transform omop_result objects into
formatted tables and figures, facilitating the visualisation of study
results working with the Observational Medical Outcomes Partnership
(OMOP) Common Data Model.
Author: Marti Catala [aut] ,
Nuria Mercade-Besora [aut, cre]
,
Yuchen Guo [ctb] ,
Elin Rowlands [ctb] ,
Edward Burn [ctb]
Maintainer: Nuria Mercade-Besora <nuria.mercadebesora@ndorms.ox.ac.uk>
Diff between visOmopResults versions 0.5.1 dated 2024-12-10 and 1.0.0 dated 2025-01-15
visOmopResults-0.5.1/visOmopResults/inst/doc/plots.R |only visOmopResults-0.5.1/visOmopResults/inst/doc/plots.Rmd |only visOmopResults-0.5.1/visOmopResults/inst/doc/plots.html |only visOmopResults-0.5.1/visOmopResults/inst/doc/tables.R |only visOmopResults-0.5.1/visOmopResults/inst/doc/tables.Rmd |only visOmopResults-0.5.1/visOmopResults/inst/doc/tables.html |only visOmopResults-0.5.1/visOmopResults/vignettes/plots.Rmd |only visOmopResults-0.5.1/visOmopResults/vignettes/tables.Rmd |only visOmopResults-1.0.0/visOmopResults/DESCRIPTION | 16 visOmopResults-1.0.0/visOmopResults/MD5 | 90 visOmopResults-1.0.0/visOmopResults/NAMESPACE | 1 visOmopResults-1.0.0/visOmopResults/NEWS.md |only visOmopResults-1.0.0/visOmopResults/R/customiseText.R | 2 visOmopResults-1.0.0/visOmopResults/R/datatableInternal.R | 274 +- visOmopResults-1.0.0/visOmopResults/R/formatEstimateName.R | 18 visOmopResults-1.0.0/visOmopResults/R/formatEstimateValue.R | 16 visOmopResults-1.0.0/visOmopResults/R/formatHeader.R | 16 visOmopResults-1.0.0/visOmopResults/R/formatTable.R | 16 visOmopResults-1.0.0/visOmopResults/R/fxTable.R | 16 visOmopResults-1.0.0/visOmopResults/R/gtTable.R | 16 visOmopResults-1.0.0/visOmopResults/R/helperFunctions.R | 22 visOmopResults-1.0.0/visOmopResults/R/mockResults.R | 16 visOmopResults-1.0.0/visOmopResults/R/plot.R | 972 +++++----- visOmopResults-1.0.0/visOmopResults/R/plottingThemes.R | 22 visOmopResults-1.0.0/visOmopResults/R/reexports.R | 16 visOmopResults-1.0.0/visOmopResults/R/tidy.R | 117 - visOmopResults-1.0.0/visOmopResults/R/utilities.R | 16 visOmopResults-1.0.0/visOmopResults/R/visOmopResults-package.R | 16 visOmopResults-1.0.0/visOmopResults/R/visOmopTable.R | 30 visOmopResults-1.0.0/visOmopResults/R/visTable.R | 24 visOmopResults-1.0.0/visOmopResults/README.md | 34 visOmopResults-1.0.0/visOmopResults/build/vignette.rds |binary visOmopResults-1.0.0/visOmopResults/inst/doc/a01_tables.R |only visOmopResults-1.0.0/visOmopResults/inst/doc/a01_tables.Rmd |only visOmopResults-1.0.0/visOmopResults/inst/doc/a01_tables.html |only visOmopResults-1.0.0/visOmopResults/inst/doc/a02_plots.R |only visOmopResults-1.0.0/visOmopResults/inst/doc/a02_plots.Rmd |only visOmopResults-1.0.0/visOmopResults/inst/doc/a02_plots.html |only visOmopResults-1.0.0/visOmopResults/man/barPlot.Rd | 2 visOmopResults-1.0.0/visOmopResults/man/boxPlot.Rd | 2 visOmopResults-1.0.0/visOmopResults/man/customiseText.Rd | 2 visOmopResults-1.0.0/visOmopResults/man/emptyPlot.Rd |only visOmopResults-1.0.0/visOmopResults/man/emptyTable.Rd | 2 visOmopResults-1.0.0/visOmopResults/man/figures/README-unnamed-chunk-5-1.png |binary visOmopResults-1.0.0/visOmopResults/man/figures/README-unnamed-chunk-6-1.png |binary visOmopResults-1.0.0/visOmopResults/man/scatterPlot.Rd | 2 visOmopResults-1.0.0/visOmopResults/man/tableOptions.Rd | 2 visOmopResults-1.0.0/visOmopResults/man/tableStyle.Rd | 5 visOmopResults-1.0.0/visOmopResults/man/themeVisOmop.Rd | 5 visOmopResults-1.0.0/visOmopResults/man/visOmopResults-package.Rd | 6 visOmopResults-1.0.0/visOmopResults/man/visOmopTable.Rd | 9 visOmopResults-1.0.0/visOmopResults/man/visTable.Rd | 5 visOmopResults-1.0.0/visOmopResults/tests/testthat/test-plot.R | 391 ++-- visOmopResults-1.0.0/visOmopResults/vignettes/a01_tables.Rmd |only visOmopResults-1.0.0/visOmopResults/vignettes/a02_plots.Rmd |only 55 files changed, 1231 insertions(+), 968 deletions(-)
More information about visOmopResults at CRAN
Permanent link
Title: Robust Bayesian Meta-Analyses
Description: A framework for estimating ensembles of meta-analytic and meta-regression models
(assuming either presence or absence of the effect, heterogeneity,
publication bias, and moderators). The RoBMA framework uses Bayesian model-averaging to
combine the competing meta-analytic models into a model ensemble, weights
the posterior parameter distributions based on posterior model probabilities
and uses Bayes factors to test for the presence or absence of the
individual components (e.g., effect vs. no effect; Bartoš et al., 2022,
<doi:10.1002/jrsm.1594>; Maier, Bartoš & Wagenmakers, 2022,
<doi:10.1037/met0000405>). Users can define a wide range of prior distributions for +
the effect size, heterogeneity, publication bias (including selection models and PET-PEESE),
and moderator components. The package provides convenient functions for summary, visualizations, and
fit diagnostics.
Author: Frantisek Bartos [aut, cre] ,
Maximilian Maier [aut] ,
Eric-Jan Wagenmakers [ths] ,
Joris Goosen [ctb],
Matthew Denwood [cph] ,
Martyn Plummer [cph]
Maintainer: Frantisek Bartos <f.bartos96@gmail.com>
Diff between RoBMA versions 3.2.0 dated 2024-12-12 and 3.3.0 dated 2025-01-15
RoBMA-3.2.0/RoBMA/tests/testthat/Rplots.pdf |only RoBMA-3.3.0/RoBMA/DESCRIPTION | 21 RoBMA-3.3.0/RoBMA/MD5 | 158 +++---- RoBMA-3.3.0/RoBMA/NAMESPACE | 3 RoBMA-3.3.0/RoBMA/NEWS.md | 14 RoBMA-3.3.0/RoBMA/R/BiBMA.R | 1 RoBMA-3.3.0/RoBMA/R/NoBMA.R | 48 +- RoBMA-3.3.0/RoBMA/R/RoBMA-package.R | 3 RoBMA-3.3.0/RoBMA/R/RoBMA-reg.R | 124 +++-- RoBMA-3.3.0/RoBMA/R/RoBMA.R | 201 +++++---- RoBMA-3.3.0/RoBMA/R/check-input-and-settings.R | 4 RoBMA-3.3.0/RoBMA/R/check-priors-and-models.R | 93 ++++ RoBMA-3.3.0/RoBMA/R/diagnostics.R | 69 +++ RoBMA-3.3.0/RoBMA/R/fit-and-marglik.R | 394 ++++++++++++++++-- RoBMA-3.3.0/RoBMA/R/inference-and-model-averaging.R | 231 ++++++++++ RoBMA-3.3.0/RoBMA/R/marginal.R | 13 RoBMA-3.3.0/RoBMA/R/plots.R | 38 + RoBMA-3.3.0/RoBMA/R/priors.R | 102 ++++ RoBMA-3.3.0/RoBMA/R/summary-heterogeneity.R | 27 + RoBMA-3.3.0/RoBMA/R/summary.R | 280 +++++++++++- RoBMA-3.3.0/RoBMA/R/tools.R | 107 +++- RoBMA-3.3.0/RoBMA/R/utilities.R | 2 RoBMA-3.3.0/RoBMA/R/zzz.R | 2 RoBMA-3.3.0/RoBMA/README.md | 13 RoBMA-3.3.0/RoBMA/build/partial.rdb |binary RoBMA-3.3.0/RoBMA/build/vignette.rds |binary RoBMA-3.3.0/RoBMA/configure.ac | 2 RoBMA-3.3.0/RoBMA/inst/doc/CustomEnsembles.html | 32 - RoBMA-3.3.0/RoBMA/inst/doc/FastRoBMA.R |only RoBMA-3.3.0/RoBMA/inst/doc/FastRoBMA.Rmd |only RoBMA-3.3.0/RoBMA/inst/doc/FastRoBMA.html |only RoBMA-3.3.0/RoBMA/inst/doc/HierarchicalBMA.html | 4 RoBMA-3.3.0/RoBMA/inst/doc/MedicineBMA.html | 4 RoBMA-3.3.0/RoBMA/inst/doc/MedicineBiBMA.html | 4 RoBMA-3.3.0/RoBMA/inst/doc/MetaRegression.R | 4 RoBMA-3.3.0/RoBMA/inst/doc/MetaRegression.Rmd | 12 RoBMA-3.3.0/RoBMA/inst/doc/MetaRegression.html | 87 ++- RoBMA-3.3.0/RoBMA/inst/doc/ReproducingBMA.html | 4 RoBMA-3.3.0/RoBMA/inst/doc/Tutorial.html | 202 ++++----- RoBMA-3.3.0/RoBMA/man/NoBMA.Rd | 25 - RoBMA-3.3.0/RoBMA/man/NoBMA.reg.Rd | 39 + RoBMA-3.3.0/RoBMA/man/RoBMA-package.Rd | 84 +-- RoBMA-3.3.0/RoBMA/man/RoBMA.Rd | 49 +- RoBMA-3.3.0/RoBMA/man/RoBMA.reg.Rd | 60 +- RoBMA-3.3.0/RoBMA/man/RoBMA_options.Rd | 54 +- RoBMA-3.3.0/RoBMA/man/check_setup.reg.Rd | 4 RoBMA-3.3.0/RoBMA/man/effect_sizes.Rd | 186 ++++---- RoBMA-3.3.0/RoBMA/man/forest.Rd | 144 +++--- RoBMA-3.3.0/RoBMA/man/interpret.Rd | 42 - RoBMA-3.3.0/RoBMA/man/plot.RoBMA.Rd | 218 ++++----- RoBMA-3.3.0/RoBMA/man/plot_models.Rd | 164 +++---- RoBMA-3.3.0/RoBMA/man/print.RoBMA.Rd | 44 +- RoBMA-3.3.0/RoBMA/man/print.summary.RoBMA.Rd | 44 +- RoBMA-3.3.0/RoBMA/man/prior.Rd | 170 +++---- RoBMA-3.3.0/RoBMA/man/prior_PEESE.Rd | 156 +++---- RoBMA-3.3.0/RoBMA/man/prior_PET.Rd | 156 +++---- RoBMA-3.3.0/RoBMA/man/prior_none.Rd | 80 +-- RoBMA-3.3.0/RoBMA/man/prior_weightfunction.Rd | 116 ++--- RoBMA-3.3.0/RoBMA/man/sample_sizes.Rd | 120 ++--- RoBMA-3.3.0/RoBMA/man/set_default_priors.Rd |only RoBMA-3.3.0/RoBMA/man/standard_errors.Rd | 190 ++++---- RoBMA-3.3.0/RoBMA/man/update.BiBMA.Rd | 282 ++++++------ RoBMA-3.3.0/RoBMA/man/weighted_multivariate_normal.Rd | 72 +-- RoBMA-3.3.0/RoBMA/man/weighted_normal.Rd | 206 ++++----- RoBMA-3.3.0/RoBMA/src/Makevars.in | 2 RoBMA-3.3.0/RoBMA/src/Makevars.ucrt | 4 RoBMA-3.3.0/RoBMA/src/Makevars.win | 4 RoBMA-3.3.0/RoBMA/src/RoBMA.cc | 13 RoBMA-3.3.0/RoBMA/src/distributions/DWN1.cc | 69 --- RoBMA-3.3.0/RoBMA/src/distributions/DWN2.cc | 75 --- RoBMA-3.3.0/RoBMA/src/distributions/DWNMIX.cc |only RoBMA-3.3.0/RoBMA/src/distributions/DWNMIX.h |only RoBMA-3.3.0/RoBMA/src/distributions/DWWN1.cc | 70 --- RoBMA-3.3.0/RoBMA/src/distributions/DWWN2.cc | 77 --- RoBMA-3.3.0/RoBMA/src/distributions/DWWNMIX.cc |only RoBMA-3.3.0/RoBMA/src/distributions/DWWNMIX.h |only RoBMA-3.3.0/RoBMA/src/functions/wmnorm.cc | 68 +++ RoBMA-3.3.0/RoBMA/src/functions/wmnorm.h | 22 + RoBMA-3.3.0/RoBMA/src/source/tools.cc | 145 ++++++ RoBMA-3.3.0/RoBMA/src/source/tools.h | 10 RoBMA-3.3.0/RoBMA/src/source/wmnorm.cc | 34 + RoBMA-3.3.0/RoBMA/src/source/wmnorm.h | 2 RoBMA-3.3.0/RoBMA/src/transformations/omega.cc |only RoBMA-3.3.0/RoBMA/src/transformations/omega.h |only RoBMA-3.3.0/RoBMA/vignettes/FastRoBMA.Rmd |only RoBMA-3.3.0/RoBMA/vignettes/MetaRegression.Rmd | 12 86 files changed, 3478 insertions(+), 2137 deletions(-)
Title: Multiple Ploidy Estimation Tool for all Species Compatible with
Flow Cytometry
Description: A graphical user interface tool to estimate ploidy from DNA cells stained with fluorescent dyes and analyzed by flow cytometry, following the methodology of Gómez-Muñoz and Fischer (2024) <doi:10.1101/2024.01.24.577056>. Features include multiple file uploading and configuration, peak fluorescence intensity detection, histogram visualizations, peak error curation, ploidy and genome size calculations, and easy results export.
Author: Cintia Gomez-Munoz [aut, cre] ,
Gilles Fischer [aut]
Maintainer: Cintia Gomez-Munoz <cintia.gomez_munoz@sorbonne-universite.fr>
Diff between MuPETFlow versions 0.1.0 dated 2025-01-07 and 0.1.1 dated 2025-01-15
DESCRIPTION | 12 ++++++------ MD5 | 8 ++++---- NAMESPACE | 1 - R/runMuPETFlow.R | 1 - build/vignette.rds |binary 5 files changed, 10 insertions(+), 12 deletions(-)
Title: Estimate Orientation of an Inertial Measurement Unit
Description: Estimate the orientation of an inertial measurement unit
(IMU) with a 3-axis accelerometer and a 3-axis gyroscope using a
complementary filter. 'imuf' takes an IMU's accelerometer and gyroscope
readings, time duration, its initial orientation, and a gain factor as
inputs, and returns an estimate of the IMU's final orientation.
Author: Felix Chan [aut, cre, cph],
Ricardo Cabello [cph]
Maintainer: Felix Chan <chanfelix@gmail.com>
Diff between imuf versions 0.5.0 dated 2025-01-11 and 0.5.1 dated 2025-01-15
DESCRIPTION | 6 +- MD5 | 12 ++-- NEWS.md | 3 + inst/doc/animate_imu.R | 24 ++++----- inst/doc/animate_imu.Rmd | 25 +++++---- inst/doc/animate_imu.html | 119 ++++++++++++++++++++++------------------------ vignettes/animate_imu.Rmd | 25 +++++---- 7 files changed, 109 insertions(+), 105 deletions(-)
Title: ADaM in R Asset Library
Description: A toolbox for programming Clinical Data Interchange Standards
Consortium (CDISC) compliant Analysis Data Model (ADaM) datasets in R.
ADaM datasets are a mandatory part of any New Drug or Biologics
License Application submitted to the United States Food and Drug
Administration (FDA). Analysis derivations are implemented in
accordance with the "Analysis Data Model Implementation Guide" (CDISC
Analysis Data Model Team, 2021,
<https://www.cdisc.org/standards/foundational/adam>).
Author: Ben Straub [aut, cre],
Stefan Bundfuss [aut] ,
Jeffrey Dickinson [aut],
Ross Farrugia [aut],
Fanny Gautier [aut],
Dinakar Kulkarni [aut],
Edoardo Mancini [aut] ,
Sadchla Mascary [aut],
Gordon Miller [aut],
Jim Rothstein [aut] ,
Sophie Shapcott [aut], [...truncated...]
Maintainer: Ben Straub <ben.x.straub@gsk.com>
Diff between admiral versions 1.1.1 dated 2024-06-17 and 1.2.0 dated 2025-01-15
admiral-1.1.1/admiral/R/create_country_codes.R |only admiral-1.1.1/admiral/R/derive_adeg_params.R |only admiral-1.1.1/admiral/R/derive_advs_params.R |only admiral-1.1.1/admiral/inst/example_scripts |only admiral-1.1.1/admiral/tests/testthat/test-derive_advs_params.R |only admiral-1.2.0/admiral/DESCRIPTION | 45 admiral-1.2.0/admiral/MD5 | 505 ++++----- admiral-1.2.0/admiral/NAMESPACE | 11 admiral-1.2.0/admiral/NEWS.md | 138 ++ admiral-1.2.0/admiral/R/admiral-package.R | 22 admiral-1.2.0/admiral/R/admiral_environment.R | 3 admiral-1.2.0/admiral/R/admiral_options.R | 18 admiral-1.2.0/admiral/R/compute_kidney.R | 13 admiral-1.2.0/admiral/R/compute_scale.R | 25 admiral-1.2.0/admiral/R/consolidate_metadata.R | 25 admiral-1.2.0/admiral/R/create_single_dose_dataset.R | 208 --- admiral-1.2.0/admiral/R/data.R | 99 + admiral-1.2.0/admiral/R/derive_basetype_records.R | 13 admiral-1.2.0/admiral/R/derive_extreme_event.R | 39 admiral-1.2.0/admiral/R/derive_joined.R | 119 +- admiral-1.2.0/admiral/R/derive_locf_records.R | 39 admiral-1.2.0/admiral/R/derive_merged.R | 68 - admiral-1.2.0/admiral/R/derive_param_bmi.R |only admiral-1.2.0/admiral/R/derive_param_bsa.R |only admiral-1.2.0/admiral/R/derive_param_computed.R | 107 + admiral-1.2.0/admiral/R/derive_param_exposure.R | 48 admiral-1.2.0/admiral/R/derive_param_extreme_record.R | 19 admiral-1.2.0/admiral/R/derive_param_map.R |only admiral-1.2.0/admiral/R/derive_param_qtc.R |only admiral-1.2.0/admiral/R/derive_param_rr.R |only admiral-1.2.0/admiral/R/derive_param_tte.R | 181 ++- admiral-1.2.0/admiral/R/derive_param_wbc_abs.R | 35 admiral-1.2.0/admiral/R/derive_summary_records.R | 40 admiral-1.2.0/admiral/R/derive_var_atoxgr.R | 17 admiral-1.2.0/admiral/R/derive_var_base.R | 26 admiral-1.2.0/admiral/R/derive_var_chg.R | 6 admiral-1.2.0/admiral/R/derive_var_dthcaus.R | 40 admiral-1.2.0/admiral/R/derive_var_extreme_date.R | 58 - admiral-1.2.0/admiral/R/derive_var_joined_exist_flag.R | 103 - admiral-1.2.0/admiral/R/derive_var_obs_number.R | 2 admiral-1.2.0/admiral/R/derive_var_pchg.R | 6 admiral-1.2.0/admiral/R/derive_var_shift.R | 14 admiral-1.2.0/admiral/R/derive_vars_atc.R |only admiral-1.2.0/admiral/R/derive_vars_cat.R |only admiral-1.2.0/admiral/R/derive_vars_computed.R | 36 admiral-1.2.0/admiral/R/derive_vars_crit_flag.R |only admiral-1.2.0/admiral/R/derive_vars_query.R | 17 admiral-1.2.0/admiral/R/derive_vars_transposed.R | 192 --- admiral-1.2.0/admiral/R/duplicates.R | 14 admiral-1.2.0/admiral/R/event.R | 25 admiral-1.2.0/admiral/R/filter_extreme.R | 2 admiral-1.2.0/admiral/R/filter_joined.R | 44 admiral-1.2.0/admiral/R/get_summary_records.R | 49 admiral-1.2.0/admiral/R/globals.R | 4 admiral-1.2.0/admiral/R/period_dataset.R | 1 admiral-1.2.0/admiral/R/roxygen2.R | 10 admiral-1.2.0/admiral/R/transform_range.R |only admiral-1.2.0/admiral/R/user_helpers.R | 12 admiral-1.2.0/admiral/README.md | 41 admiral-1.2.0/admiral/build/vignette.rds |binary admiral-1.2.0/admiral/data/admiral_adlb.rda |binary admiral-1.2.0/admiral/data/admiral_adsl.rda |binary admiral-1.2.0/admiral/data/atoxgr_criteria_ctcv4.rda |binary admiral-1.2.0/admiral/data/atoxgr_criteria_ctcv5.rda |binary admiral-1.2.0/admiral/data/atoxgr_criteria_daids.rda |binary admiral-1.2.0/admiral/data/country_code_lookup.rda |only admiral-1.2.0/admiral/data/dose_freq_lookup.rda |only admiral-1.2.0/admiral/data/ex_single.rda |binary admiral-1.2.0/admiral/data/example_qs.rda |binary admiral-1.2.0/admiral/data/queries.rda |binary admiral-1.2.0/admiral/data/queries_mh.rda |binary admiral-1.2.0/admiral/inst/WORDLIST | 16 admiral-1.2.0/admiral/inst/adlb_grading/adlb_grading_spec.xlsx |binary admiral-1.2.0/admiral/inst/doc/adsl.R | 70 - admiral-1.2.0/admiral/inst/doc/adsl.Rmd | 62 - admiral-1.2.0/admiral/inst/doc/adsl.html | 112 +- admiral-1.2.0/admiral/inst/doc/bds_exposure.R | 64 - admiral-1.2.0/admiral/inst/doc/bds_exposure.Rmd | 72 - admiral-1.2.0/admiral/inst/doc/bds_exposure.html | 60 - admiral-1.2.0/admiral/inst/doc/bds_finding.R | 131 +- admiral-1.2.0/admiral/inst/doc/bds_finding.Rmd | 163 ++ admiral-1.2.0/admiral/inst/doc/bds_finding.html | 547 ++++++++- admiral-1.2.0/admiral/inst/doc/bds_tte.R | 5 admiral-1.2.0/admiral/inst/doc/bds_tte.Rmd | 5 admiral-1.2.0/admiral/inst/doc/bds_tte.html | 17 admiral-1.2.0/admiral/inst/doc/concepts_conventions.html | 2 admiral-1.2.0/admiral/inst/doc/generic.html | 555 ---------- admiral-1.2.0/admiral/inst/doc/higher_order.R | 8 admiral-1.2.0/admiral/inst/doc/higher_order.Rmd | 8 admiral-1.2.0/admiral/inst/doc/higher_order.html | 15 admiral-1.2.0/admiral/inst/doc/hys_law.R | 46 admiral-1.2.0/admiral/inst/doc/hys_law.Rmd | 64 - admiral-1.2.0/admiral/inst/doc/hys_law.html | 496 ++------ admiral-1.2.0/admiral/inst/doc/imputation.html | 2 admiral-1.2.0/admiral/inst/doc/lab_grading.R | 4 admiral-1.2.0/admiral/inst/doc/lab_grading.Rmd | 35 admiral-1.2.0/admiral/inst/doc/lab_grading.html | 60 - admiral-1.2.0/admiral/inst/doc/occds.R | 61 - admiral-1.2.0/admiral/inst/doc/occds.Rmd | 61 - admiral-1.2.0/admiral/inst/doc/occds.html | 129 +- admiral-1.2.0/admiral/inst/doc/pk_adnca.R | 28 admiral-1.2.0/admiral/inst/doc/pk_adnca.Rmd | 28 admiral-1.2.0/admiral/inst/doc/pk_adnca.html | 94 - admiral-1.2.0/admiral/inst/doc/questionnaires.R | 62 - admiral-1.2.0/admiral/inst/doc/questionnaires.Rmd | 70 - admiral-1.2.0/admiral/inst/doc/questionnaires.html | 121 +- admiral-1.2.0/admiral/inst/doc/visits_periods.Rmd | 2 admiral-1.2.0/admiral/inst/doc/visits_periods.html | 4 admiral-1.2.0/admiral/inst/templates/ad_adae.R | 10 admiral-1.2.0/admiral/inst/templates/ad_adcm.R | 8 admiral-1.2.0/admiral/inst/templates/ad_adeg.R | 127 -- admiral-1.2.0/admiral/inst/templates/ad_adex.R | 78 - admiral-1.2.0/admiral/inst/templates/ad_adlb.R | 157 +- admiral-1.2.0/admiral/inst/templates/ad_adlbhy.R | 42 admiral-1.2.0/admiral/inst/templates/ad_admh.R | 13 admiral-1.2.0/admiral/inst/templates/ad_adpc.R | 40 admiral-1.2.0/admiral/inst/templates/ad_adpp.R | 79 - admiral-1.2.0/admiral/inst/templates/ad_adppk.R | 13 admiral-1.2.0/admiral/inst/templates/ad_adsl.R | 36 admiral-1.2.0/admiral/inst/templates/ad_advs.R | 82 - admiral-1.2.0/admiral/man/admiral-package.Rd | 13 admiral-1.2.0/admiral/man/admiral_adsl.Rd | 2 admiral-1.2.0/admiral/man/censor_source.Rd | 10 admiral-1.2.0/admiral/man/compute_bmi.Rd | 5 admiral-1.2.0/admiral/man/compute_bsa.Rd | 7 admiral-1.2.0/admiral/man/compute_egfr.Rd | 3 admiral-1.2.0/admiral/man/compute_framingham.Rd | 3 admiral-1.2.0/admiral/man/compute_map.Rd | 5 admiral-1.2.0/admiral/man/compute_qtc.Rd | 21 admiral-1.2.0/admiral/man/compute_qual_imputation.Rd | 3 admiral-1.2.0/admiral/man/compute_qual_imputation_dec.Rd | 3 admiral-1.2.0/admiral/man/compute_rr.Rd | 7 admiral-1.2.0/admiral/man/compute_scale.Rd | 3 admiral-1.2.0/admiral/man/consolidate_metadata.Rd | 11 admiral-1.2.0/admiral/man/country_code_lookup.Rd | 6 admiral-1.2.0/admiral/man/create_single_dose_dataset.Rd | 28 admiral-1.2.0/admiral/man/date_source.Rd | 10 admiral-1.2.0/admiral/man/default_qtc_paramcd.Rd | 4 admiral-1.2.0/admiral/man/derive_basetype_records.Rd | 16 admiral-1.2.0/admiral/man/derive_extreme_event.Rd | 22 admiral-1.2.0/admiral/man/derive_locf_records.Rd | 38 admiral-1.2.0/admiral/man/derive_param_bmi.Rd | 5 admiral-1.2.0/admiral/man/derive_param_bsa.Rd | 5 admiral-1.2.0/admiral/man/derive_param_computed.Rd | 62 - admiral-1.2.0/admiral/man/derive_param_exposure.Rd | 31 admiral-1.2.0/admiral/man/derive_param_extreme_record.Rd | 10 admiral-1.2.0/admiral/man/derive_param_framingham.Rd | 3 admiral-1.2.0/admiral/man/derive_param_map.Rd | 5 admiral-1.2.0/admiral/man/derive_param_qtc.Rd | 55 admiral-1.2.0/admiral/man/derive_param_rr.Rd | 21 admiral-1.2.0/admiral/man/derive_param_tte.Rd | 78 + admiral-1.2.0/admiral/man/derive_summary_records.Rd | 30 admiral-1.2.0/admiral/man/derive_var_analysis_ratio.Rd | 3 admiral-1.2.0/admiral/man/derive_var_anrind.Rd | 3 admiral-1.2.0/admiral/man/derive_var_atoxgr.Rd | 3 admiral-1.2.0/admiral/man/derive_var_atoxgr_dir.Rd | 12 admiral-1.2.0/admiral/man/derive_var_base.Rd | 29 admiral-1.2.0/admiral/man/derive_var_chg.Rd | 9 admiral-1.2.0/admiral/man/derive_var_dthcaus.Rd | 10 admiral-1.2.0/admiral/man/derive_var_extreme_dt.Rd | 10 admiral-1.2.0/admiral/man/derive_var_extreme_dtm.Rd | 10 admiral-1.2.0/admiral/man/derive_var_extreme_flag.Rd | 1 admiral-1.2.0/admiral/man/derive_var_joined_exist_flag.Rd | 89 + admiral-1.2.0/admiral/man/derive_var_merged_ef_msrc.Rd | 1 admiral-1.2.0/admiral/man/derive_var_merged_exist_flag.Rd | 1 admiral-1.2.0/admiral/man/derive_var_merged_summary.Rd | 28 admiral-1.2.0/admiral/man/derive_var_obs_number.Rd | 1 admiral-1.2.0/admiral/man/derive_var_ontrtfl.Rd | 3 admiral-1.2.0/admiral/man/derive_var_pchg.Rd | 9 admiral-1.2.0/admiral/man/derive_var_relative_flag.Rd | 1 admiral-1.2.0/admiral/man/derive_var_shift.Rd | 17 admiral-1.2.0/admiral/man/derive_vars_atc.Rd | 67 - admiral-1.2.0/admiral/man/derive_vars_cat.Rd |only admiral-1.2.0/admiral/man/derive_vars_computed.Rd | 37 admiral-1.2.0/admiral/man/derive_vars_crit_flag.Rd |only admiral-1.2.0/admiral/man/derive_vars_joined.Rd | 6 admiral-1.2.0/admiral/man/derive_vars_merged.Rd | 17 admiral-1.2.0/admiral/man/derive_vars_merged_lookup.Rd | 5 admiral-1.2.0/admiral/man/derive_vars_transposed.Rd | 62 - admiral-1.2.0/admiral/man/dose_freq_lookup.Rd | 2 admiral-1.2.0/admiral/man/dthcaus_source.Rd | 12 admiral-1.2.0/admiral/man/event_joined.Rd | 14 admiral-1.2.0/admiral/man/event_source.Rd | 15 admiral-1.2.0/admiral/man/ex_single.Rd | 2 admiral-1.2.0/admiral/man/example_qs.Rd | 2 admiral-1.2.0/admiral/man/extend_condition.Rd |only admiral-1.2.0/admiral/man/filter_date_sources.Rd |only admiral-1.2.0/admiral/man/filter_joined.Rd | 34 admiral-1.2.0/admiral/man/get_admiral_option.Rd | 2 admiral-1.2.0/admiral/man/get_joined_sub_data.Rd |only admiral-1.2.0/admiral/man/get_summary_records.Rd | 36 admiral-1.2.0/admiral/man/queries.Rd | 3 admiral-1.2.0/admiral/man/queries_mh.Rd | 3 admiral-1.2.0/admiral/man/set_admiral_options.Rd | 11 admiral-1.2.0/admiral/man/signal_duplicate_records.Rd | 8 admiral-1.2.0/admiral/man/transform_range.Rd |only admiral-1.2.0/admiral/man/tte_source.Rd | 16 admiral-1.2.0/admiral/man/use_ad_template.Rd | 9 admiral-1.2.0/admiral/tests/testthat.R | 2 admiral-1.2.0/admiral/tests/testthat/_snaps/admiral_options.md |only admiral-1.2.0/admiral/tests/testthat/_snaps/compute_scale.md | 2 admiral-1.2.0/admiral/tests/testthat/_snaps/create_single_dose_dataset.md | 3 admiral-1.2.0/admiral/tests/testthat/_snaps/derive_extreme_event.md | 2 admiral-1.2.0/admiral/tests/testthat/_snaps/derive_merged.md | 12 admiral-1.2.0/admiral/tests/testthat/_snaps/derive_param_bmi.md |only admiral-1.2.0/admiral/tests/testthat/_snaps/derive_param_bsa.md |only admiral-1.2.0/admiral/tests/testthat/_snaps/derive_param_computed.md | 38 admiral-1.2.0/admiral/tests/testthat/_snaps/derive_param_extreme_record.md |only admiral-1.2.0/admiral/tests/testthat/_snaps/derive_param_map.md |only admiral-1.2.0/admiral/tests/testthat/_snaps/derive_param_qtc.md |only admiral-1.2.0/admiral/tests/testthat/_snaps/derive_param_rr.md |only admiral-1.2.0/admiral/tests/testthat/_snaps/derive_param_tte.md | 32 admiral-1.2.0/admiral/tests/testthat/_snaps/derive_var_dthcaus.md | 39 admiral-1.2.0/admiral/tests/testthat/_snaps/derive_var_extreme_date.md | 109 + admiral-1.2.0/admiral/tests/testthat/_snaps/derive_var_merged_ef_msrc.md | 2 admiral-1.2.0/admiral/tests/testthat/_snaps/derive_var_trtemfl.md | 9 admiral-1.2.0/admiral/tests/testthat/_snaps/derive_vars_atc.md |only admiral-1.2.0/admiral/tests/testthat/_snaps/derive_vars_cat.md |only admiral-1.2.0/admiral/tests/testthat/_snaps/derive_vars_crit_flag.md |only admiral-1.2.0/admiral/tests/testthat/_snaps/derive_vars_dt.md | 6 admiral-1.2.0/admiral/tests/testthat/_snaps/derive_vars_query.md | 20 admiral-1.2.0/admiral/tests/testthat/_snaps/derive_vars_transposed.md | 42 admiral-1.2.0/admiral/tests/testthat/_snaps/get_summary_records.md |only admiral-1.2.0/admiral/tests/testthat/_snaps/transform_range.md |only admiral-1.2.0/admiral/tests/testthat/test-admiral_options.R | 59 - admiral-1.2.0/admiral/tests/testthat/test-compute_kidney.R | 6 admiral-1.2.0/admiral/tests/testthat/test-compute_scale.R | 5 admiral-1.2.0/admiral/tests/testthat/test-consolidate_metadata.R | 29 admiral-1.2.0/admiral/tests/testthat/test-create_single_dose_dataset.R | 251 ++-- admiral-1.2.0/admiral/tests/testthat/test-derive_extreme_event.R | 86 - admiral-1.2.0/admiral/tests/testthat/test-derive_joined.R | 78 + admiral-1.2.0/admiral/tests/testthat/test-derive_merged.R | 95 - admiral-1.2.0/admiral/tests/testthat/test-derive_param_bmi.R |only admiral-1.2.0/admiral/tests/testthat/test-derive_param_bsa.R |only admiral-1.2.0/admiral/tests/testthat/test-derive_param_computed.R | 134 ++ admiral-1.2.0/admiral/tests/testthat/test-derive_param_extreme_record.R | 104 + admiral-1.2.0/admiral/tests/testthat/test-derive_param_map.R |only admiral-1.2.0/admiral/tests/testthat/test-derive_param_qtc.R | 151 ++ admiral-1.2.0/admiral/tests/testthat/test-derive_param_rr.R | 50 admiral-1.2.0/admiral/tests/testthat/test-derive_param_tte.R | 250 ++++ admiral-1.2.0/admiral/tests/testthat/test-derive_summary_records.R | 39 admiral-1.2.0/admiral/tests/testthat/test-derive_var_atoxgr.R | 126 +- admiral-1.2.0/admiral/tests/testthat/test-derive_var_base.R | 104 - admiral-1.2.0/admiral/tests/testthat/test-derive_var_chg.R | 72 - admiral-1.2.0/admiral/tests/testthat/test-derive_var_dthcaus.R | 134 ++ admiral-1.2.0/admiral/tests/testthat/test-derive_var_extreme_date.R | 167 ++- admiral-1.2.0/admiral/tests/testthat/test-derive_var_joined_exist_flag.R | 55 admiral-1.2.0/admiral/tests/testthat/test-derive_var_shift.R | 44 admiral-1.2.0/admiral/tests/testthat/test-derive_var_trtemfl.R | 14 admiral-1.2.0/admiral/tests/testthat/test-derive_vars_atc.R |only admiral-1.2.0/admiral/tests/testthat/test-derive_vars_cat.R |only admiral-1.2.0/admiral/tests/testthat/test-derive_vars_computed.R | 48 admiral-1.2.0/admiral/tests/testthat/test-derive_vars_crit_flag.R |only admiral-1.2.0/admiral/tests/testthat/test-derive_vars_dt.R | 142 ++ admiral-1.2.0/admiral/tests/testthat/test-derive_vars_query.R | 44 admiral-1.2.0/admiral/tests/testthat/test-derive_vars_transposed.R | 198 +-- admiral-1.2.0/admiral/tests/testthat/test-event.R | 33 admiral-1.2.0/admiral/tests/testthat/test-filter_joined.R | 41 admiral-1.2.0/admiral/tests/testthat/test-get_summary_records.R | 58 - admiral-1.2.0/admiral/tests/testthat/test-period_dataset.R | 41 admiral-1.2.0/admiral/tests/testthat/test-transform_range.R |only admiral-1.2.0/admiral/tests/testthat/test-user_utils.R | 3 admiral-1.2.0/admiral/vignettes/adsl.Rmd | 62 - admiral-1.2.0/admiral/vignettes/bds_exposure.Rmd | 72 - admiral-1.2.0/admiral/vignettes/bds_finding.Rmd | 163 ++ admiral-1.2.0/admiral/vignettes/bds_tte.Rmd | 5 admiral-1.2.0/admiral/vignettes/higher_order.Rmd | 8 admiral-1.2.0/admiral/vignettes/hys_law.Rmd | 64 - admiral-1.2.0/admiral/vignettes/lab_grading.Rmd | 35 admiral-1.2.0/admiral/vignettes/occds.Rmd | 61 - admiral-1.2.0/admiral/vignettes/pk_adnca.Rmd | 28 admiral-1.2.0/admiral/vignettes/questionnaires.Rmd | 70 - admiral-1.2.0/admiral/vignettes/visits_periods.Rmd | 2 273 files changed, 6112 insertions(+), 5068 deletions(-)
Title: Full Consistency Method (FUCOM)
Description: Full Consistency Method (FUCOM) for multi-criteria decision-making (MCDM), developed by Dragam Pamucar in 2018 (<doi:10.3390/sym10090393>). The goal of the method is to determine the weights of criteria such that the deviation from full consistency is minimized. Users provide a character vector specifying the ranking of each criterion according to its significance, starting from the criterion expected to have the highest weight to the least significant one. Additionally, users provide a numeric vector specifying the priority values for each criterion. The comparison is made with respect to the first-ranked (most significant) criterion. The function returns the optimized weights for each criterion (summing to 1), the comparative priority (Phi) values, the mathematical transitivity condition (w) value, and the minimum deviation from full consistency (DFC).
Author: Mateus Vanzetta [aut, cre],
Marcos Santos [ctb]
Maintainer: Mateus Vanzetta <mateusvanzetta@id.uff.br>
Diff between fucom versions 0.0.2 dated 2024-09-25 and 0.0.3 dated 2025-01-15
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/fucom.html | 10 +++++----- tests/testthat/test-fucom.R | 14 +++++++++----- 4 files changed, 20 insertions(+), 16 deletions(-)
Title: Optimally Robust Influence Curves and Estimators for Location
and Scale
Description: Functions for the determination of optimally robust influence curves and
estimators in case of normal location and/or scale (see Chapter 8 in Kohl (2005)
<https://epub.uni-bayreuth.de/839/2/DissMKohl.pdf>).
Author: Matthias Kohl [cre, cph],
Peter Ruckdeschel [aut, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between RobLox versions 1.2.1 dated 2024-02-10 and 1.2.3 dated 2025-01-15
DESCRIPTION | 21 ++++---- MD5 | 12 ++-- R/sysdata.rda |binary build/partial.rdb |binary inst/CITATION | 2 inst/NEWS | 17 ++++++ man/0RobLox-package.Rd | 127 ++++++++++++++++++++++++------------------------- 7 files changed, 98 insertions(+), 81 deletions(-)
Title: Lightweight Modern & Responsive Card Component for 'shiny'
Description: Responsive and modern 'HTML' card essentials for 'shiny' applications and dashboards. This novel card component in 'Bootstrap' provides a flexible and extensible content container with multiple variants and options for building robust 'R' based apps e.g for graph build or machine learning projects. The features rely on a combination of 'JQuery' <https://jquery.com> and 'CSS' styles to improve the card functionality.
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between card.pro versions 2.2.1 dated 2024-12-17 and 2.3.0 dated 2025-01-15
card.pro-2.2.1/card.pro/inst/shiny-test/app1/rsconnect |only card.pro-2.3.0/card.pro/DESCRIPTION | 6 card.pro-2.3.0/card.pro/MD5 | 31 - card.pro-2.3.0/card.pro/NAMESPACE | 2 card.pro-2.3.0/card.pro/NEWS.md | 5 card.pro-2.3.0/card.pro/R/card.pro-package.R | 4 card.pro-2.3.0/card.pro/R/cards.R | 114 ----- card.pro-2.3.0/card.pro/R/misc.R | 216 +++++++++- card.pro-2.3.0/card.pro/inst/bundle/req/prod.min.css | 2 card.pro-2.3.0/card.pro/inst/doc/introduction_to_cardpro.html | 4 card.pro-2.3.0/card.pro/inst/shiny-test/app1/app.R | 19 card.pro-2.3.0/card.pro/man/altPanel.Rd | 2 card.pro-2.3.0/card.pro/man/card.pro.Rd | 9 card.pro-2.3.0/card.pro/man/collapseEntry.Rd |only card.pro-2.3.0/card.pro/man/primePanel.Rd | 2 card.pro-2.3.0/card.pro/man/progressInput.Rd |only card.pro-2.3.0/card.pro/man/tabEntry.Rd | 9 card.pro-2.3.0/card.pro/man/wrapper.Rd | 2 18 files changed, 299 insertions(+), 128 deletions(-)
Title: Interactive Charts with the 'JavaScript' 'VChart' Library
Description: Provides an 'htmlwidgets' interface to 'VChart.js'.
'VChart', more than just a cross-platform charting library, but also an expressive data storyteller.
'VChart' examples and documentation are available here: <https://www.visactor.io/vchart>.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between vchartr versions 0.1.3 dated 2024-10-31 and 0.1.4 dated 2025-01-15
DESCRIPTION | 6 LICENSE | 4 MD5 | 304 +-- NAMESPACE | 210 +- NEWS.md | 29 R/data.R | 408 ++-- R/events.R | 80 R/facets.R | 696 ++++---- R/format.R | 316 +-- R/layers.R | 3281 +++++++++++++++++++------------------- R/mark.R | 668 +++---- R/scales.R | 2092 ++++++++++++------------ R/select.R | 44 R/shiny.R | 60 R/specs.R | 974 +++++------ R/theme.R | 274 +-- R/utils.R | 708 ++++---- R/vchart-package.R | 18 R/vchart.R | 130 - R/vmap.R | 208 +- README.md | 264 +-- build/vignette.rds |binary inst/d3-format-locale/ar-001.json | 14 inst/d3-format-locale/ar-AE.json | 14 inst/d3-format-locale/ar-BH.json | 14 inst/d3-format-locale/ar-DJ.json | 14 inst/d3-format-locale/ar-DZ.json | 12 inst/d3-format-locale/ar-EG.json | 14 inst/d3-format-locale/ar-EH.json | 12 inst/d3-format-locale/ar-ER.json | 14 inst/d3-format-locale/ar-IL.json | 14 inst/d3-format-locale/ar-IQ.json | 14 inst/d3-format-locale/ar-JO.json | 14 inst/d3-format-locale/ar-KM.json | 14 inst/d3-format-locale/ar-KW.json | 14 inst/d3-format-locale/ar-LB.json | 14 inst/d3-format-locale/ar-LY.json | 12 inst/d3-format-locale/ar-MA.json | 12 inst/d3-format-locale/ar-MR.json | 14 inst/d3-format-locale/ar-OM.json | 14 inst/d3-format-locale/ar-PS.json | 14 inst/d3-format-locale/ar-QA.json | 14 inst/d3-format-locale/ar-SA.json | 14 inst/d3-format-locale/ar-SD.json | 14 inst/d3-format-locale/ar-SO.json | 14 inst/d3-format-locale/ar-SS.json | 14 inst/d3-format-locale/ar-SY.json | 14 inst/d3-format-locale/ar-TD.json | 14 inst/d3-format-locale/ar-TN.json | 12 inst/d3-format-locale/ar-YE.json | 14 inst/d3-format-locale/ca-ES.json | 12 inst/d3-format-locale/cs-CZ.json | 12 inst/d3-format-locale/da-DK.json | 12 inst/d3-format-locale/de-CH.json | 12 inst/d3-format-locale/de-DE.json | 12 inst/d3-format-locale/en-CA.json | 12 inst/d3-format-locale/en-GB.json | 12 inst/d3-format-locale/en-IE.json | 12 inst/d3-format-locale/en-IN.json | 12 inst/d3-format-locale/en-US.json | 12 inst/d3-format-locale/es-BO.json | 14 inst/d3-format-locale/es-ES.json | 12 inst/d3-format-locale/es-MX.json | 12 inst/d3-format-locale/fi-FI.json | 12 inst/d3-format-locale/fr-CA.json | 12 inst/d3-format-locale/fr-FR.json | 14 inst/d3-format-locale/he-IL.json | 12 inst/d3-format-locale/hu-HU.json | 12 inst/d3-format-locale/it-IT.json | 12 inst/d3-format-locale/ja-JP.json | 12 inst/d3-format-locale/ko-KR.json | 12 inst/d3-format-locale/mk-MK.json | 12 inst/d3-format-locale/nl-NL.json | 12 inst/d3-format-locale/pl-PL.json | 12 inst/d3-format-locale/pt-BR.json | 12 inst/d3-format-locale/pt-PT.json | 12 inst/d3-format-locale/ru-RU.json | 12 inst/d3-format-locale/sl-SI.json | 12 inst/d3-format-locale/sv-SE.json | 12 inst/d3-format-locale/uk-UA.json | 12 inst/d3-format-locale/zh-CN.json | 12 inst/doc/vchartr.R | 18 inst/doc/vchartr.Rmd | 206 +- inst/doc/vchartr.html | 870 +++++----- inst/examples/app-chart-types.R | 458 ++--- inst/htmlwidgets/vchart.js | 2 inst/htmlwidgets/vchart.yaml | 14 man/co2_emissions.Rd | 72 man/co2_world.Rd | 60 man/countries_gdp.Rd | 52 man/eco2mix.Rd | 62 man/eco2mix_long.Rd | 48 man/electricity_mix.Rd | 50 man/energy_sankey.Rd | 48 man/format-date.Rd | 128 - man/format_num_d3.Rd | 60 man/mark-area.Rd | 238 +- man/mark-line.Rd | 274 +-- man/meteo_paris.Rd | 58 man/scale-color-manual.Rd | 160 - man/scale-continuous.Rd | 278 +-- man/scale-date.Rd | 274 +-- man/scale-discrete.Rd | 64 man/scale-gradient.Rd | 128 - man/temperatures.Rd | 38 man/top_cran_downloads.Rd | 38 man/top_generation.Rd | 46 man/v_area.Rd | 251 +- man/v_bar.Rd | 152 - man/v_boxplot.Rd | 132 - man/v_circlepacking.Rd | 176 +- man/v_event.Rd | 86 man/v_facet_wrap.Rd | 142 - man/v_gauge.Rd | 168 - man/v_heatmap.Rd | 134 - man/v_hist.Rd | 202 +- man/v_jitter.Rd | 148 - man/v_labs.Rd | 68 man/v_line.Rd | 186 +- man/v_pie.Rd | 222 +- man/v_progress.Rd | 116 - man/v_radar.Rd | 158 - man/v_sankey.Rd | 168 - man/v_scale_size.Rd | 98 - man/v_scatter.Rd | 178 +- man/v_smooth.Rd | 186 +- man/v_specs.Rd | 76 man/v_specs_axes.Rd | 204 +- man/v_specs_colors.Rd | 58 man/v_specs_crosshair.Rd | 112 - man/v_specs_custom_mark.Rd | 112 - man/v_specs_datazoom.Rd | 94 - man/v_specs_indicator.Rd | 124 - man/v_specs_legend.Rd | 70 man/v_specs_player.Rd | 66 man/v_specs_tooltip.Rd | 64 man/v_sunburst.Rd | 204 +- man/v_theme.Rd | 318 +-- man/v_treemap.Rd | 126 - man/v_venn.Rd | 148 - man/v_waterfall.Rd | 138 - man/v_wordcloud.Rd | 134 - man/vchart-shiny.Rd | 260 +-- man/vchart.Rd | 208 +- man/vchartr-package.Rd | 44 man/vmap.Rd | 190 +- man/world_electricity.Rd | 70 vignettes/articles/bar.Rmd | 500 ++--- vignettes/articles/charts.Rmd | 540 +++--- vignettes/articles/line.Rmd | 552 +++--- vignettes/articles/pie.Rmd | 286 +-- vignettes/articles/scatter.Rmd | 208 +- vignettes/vchartr.Rmd | 206 +- 153 files changed, 11693 insertions(+), 11666 deletions(-)
Title: Imputation of Missing Data in Sequence Analysis
Description: Multiple imputation of missing data in a dataset using MICT or
MICT-timing methods. The core idea of the algorithms is to fill gaps of
missing data, which is the typical form of missing data in a longitudinal
setting, recursively from their edges. Prediction is based on either a
multinomial or random forest regression model. Covariates and
time-dependent covariates can be included in the model.
Author: Kevin Emery [aut, cre],
Anthony Guinchard [aut],
Andre Berchtold [aut],
Kamyar Taher [aut]
Maintainer: Kevin Emery <kevin.emery@unige.ch>
Diff between seqimpute versions 2.1.0 dated 2024-11-13 and 2.2.0 dated 2025-01-15
seqimpute-2.1.0/seqimpute/R/SI0_InitCheck.R |only seqimpute-2.1.0/seqimpute/R/SI1_ORDERCreation.R |only seqimpute-2.1.0/seqimpute/R/SI2_ComputeImputeOrder.R |only seqimpute-2.1.0/seqimpute/R/SI3_SpecificModelImputation.R |only seqimpute-2.1.0/seqimpute/R/SI4_InitialNAsImpute.R |only seqimpute-2.1.0/seqimpute/R/SI5_TerminalNasImpute.R |only seqimpute-2.1.0/seqimpute/R/SI6_SLGNAsImpute.R |only seqimpute-2.1.0/seqimpute/R/SICommon.R |only seqimpute-2.1.0/seqimpute/R/SIX_FinalConversion.R |only seqimpute-2.1.0/seqimpute/R/manipulation_seqimp.R |only seqimpute-2.1.0/seqimpute/R/missings_generation.R |only seqimpute-2.1.0/seqimpute/R/seqimpute_timing.R |only seqimpute-2.2.0/seqimpute/DESCRIPTION | 20 seqimpute-2.2.0/seqimpute/MD5 | 87 - seqimpute-2.2.0/seqimpute/NAMESPACE | 1 seqimpute-2.2.0/seqimpute/NEWS.md | 38 seqimpute-2.2.0/seqimpute/R/addcluster.R |only seqimpute-2.2.0/seqimpute/R/checks.R |only seqimpute-2.2.0/seqimpute/R/compute.order.R |only seqimpute-2.2.0/seqimpute/R/data.r | 20 seqimpute-2.2.0/seqimpute/R/final.transform.R |only seqimpute-2.2.0/seqimpute/R/fromseqimp.R |only seqimpute-2.2.0/seqimpute/R/methods.seqimp.R |only seqimpute-2.2.0/seqimpute/R/mict.initial.R |only seqimpute-2.2.0/seqimpute/R/mict.internal.R |only seqimpute-2.2.0/seqimpute/R/mict.leftSLG.R |only seqimpute-2.2.0/seqimpute/R/mict.rightSLG.R |only seqimpute-2.2.0/seqimpute/R/mict.terminal.R |only seqimpute-2.2.0/seqimpute/R/mict.timing.R |only seqimpute-2.2.0/seqimpute/R/plots.R | 307 +-- seqimpute-2.2.0/seqimpute/R/seqQuickLook.R | 231 +- seqimpute-2.2.0/seqimpute/R/seqTrans.R | 118 - seqimpute-2.2.0/seqimpute/R/seqaddNA.R |only seqimpute-2.2.0/seqimpute/R/seqcomplete.R |only seqimpute-2.2.0/seqimpute/R/seqimpute.R | 614 +++---- seqimpute-2.2.0/seqimpute/R/seqwithmiss.R |only seqimpute-2.2.0/seqimpute/inst/doc/vignette.pdf |binary seqimpute-2.2.0/seqimpute/man/addcluster.Rd | 10 seqimpute-2.2.0/seqimpute/man/fromseqimp.Rd | 127 - seqimpute-2.2.0/seqimpute/man/gameadd.Rd | 14 seqimpute-2.2.0/seqimpute/man/plot.seqimp.Rd | 6 seqimpute-2.2.0/seqimpute/man/print.seqimp.Rd | 2 seqimpute-2.2.0/seqimpute/man/seqQuickLook.Rd | 18 seqimpute-2.2.0/seqimpute/man/seqTrans.Rd | 8 seqimpute-2.2.0/seqimpute/man/seqaddNA.Rd | 173 +- seqimpute-2.2.0/seqimpute/man/seqcomplete.Rd | 10 seqimpute-2.2.0/seqimpute/man/seqimpute.Rd | 153 + seqimpute-2.2.0/seqimpute/man/seqmissIplot.Rd | 30 seqimpute-2.2.0/seqimpute/man/seqmissfplot.Rd | 43 seqimpute-2.2.0/seqimpute/man/seqmissimplic.Rd | 115 - seqimpute-2.2.0/seqimpute/man/seqwithmiss.Rd | 10 seqimpute-2.2.0/seqimpute/man/summary.seqimp.Rd | 2 seqimpute-2.2.0/seqimpute/tests/testthat/test-manipulation_seqimp.R | 116 - seqimpute-2.2.0/seqimpute/tests/testthat/test-missings_generation.R | 10 seqimpute-2.2.0/seqimpute/tests/testthat/test-plots.R | 42 seqimpute-2.2.0/seqimpute/tests/testthat/test-seqQuickLook.R | 76 seqimpute-2.2.0/seqimpute/tests/testthat/test-seqTrans.R | 41 seqimpute-2.2.0/seqimpute/tests/testthat/test-seqimpute.R | 824 ++++++---- 58 files changed, 1813 insertions(+), 1453 deletions(-)
Title: Interactive Networks, Timelines, Barplots, Galleries with
'D3.js'
Description: Creates interactive analytic graphs with 'R'. It joins the data analysis power of R and the visualization libraries of JavaScript in one package. The package provides interactive networks, timelines, barplots, image galleries and evolving networks. Graphs are represented as 'D3.js' graphs embedded in a web page ready for its interactive analysis and exploration.
Author: Modesto Escobar [aut, cph, cre]
,
Carlos Prieto [aut] ,
David Barrios [aut]
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between rD3plot versions 1.1.21 dated 2024-10-18 and 1.1.26 dated 2025-01-15
DESCRIPTION | 8 +- MD5 | 16 ++-- NAMESPACE | 2 R/methods.R | 2 R/multigraph.R | 182 ++++++++++++++++++++++++++++++++++++++++++++++--- inst/www/functions.js | 2 inst/www/gallery2.js | 8 +- inst/www/network.js | 50 +++++++++---- man/evolNetwork_rd3.Rd | 37 +++++++-- 9 files changed, 253 insertions(+), 54 deletions(-)
Title: Interactive Analytic Networks
Description: Create interactive analytic networks. It joins the data analysis power of R to obtain coincidences, co-occurrences and correlations, and the visualization libraries of 'JavaScript' in one package.
Author: Modesto Escobar [cre, aut, cph]
,
David Barrios [aut],
Carlos Prieto [aut] ,
Luis Martinez-Uribe [aut] ,
Pablo Cabrera-Alvarez [aut] ,
Cristina Calvo-Lopez [aut]
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between netCoin versions 2.0.84 dated 2024-10-18 and 2.1.0 dated 2025-01-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/netCoin.html | 4 ++-- man/get_template2.Rd | 2 +- man/netExhibit.Rd | 2 +- 5 files changed, 12 insertions(+), 12 deletions(-)
Title: Perform Factorial Analysis from 'FactoMineR' with a Shiny
Application
Description: Perform factorial analysis with a menu and draw graphs interactively thanks to 'FactoMineR' and a Shiny application.
Author: Pauline Vaissie [aut],
Astrid Monge [aut],
Francois Husson [aut, cre]
Maintainer: Francois Husson <francois.husson@institut-agro.fr>
Diff between Factoshiny versions 2.6 dated 2024-04-20 and 2.7 dated 2025-01-15
DESCRIPTION | 14 ++++++++--- MD5 | 57 +++++++++++++++++++++++----------------------- R/CAshiny.R | 8 +++--- R/FAMDshiny.R | 8 +++--- R/Factoshiny.R | 54 +++++++++++++++++++++---------------------- R/HCPCshiny.R | 6 ++-- R/MCAshiny.R | 9 +++---- R/MFAshiny.R | 8 +++--- R/PCAshiny.R | 6 ++-- R/catdesshiny.R | 6 ++-- R/condesshiny.R | 8 +++--- inst/FactoCAapp2/ui.R | 4 +-- inst/FactoFAMDapp2/ui.R | 2 - inst/FactoMCAapp2/ui.R | 2 - inst/FactoMFAapp/ui.R | 2 - inst/FactoPCAapp2/ui.R | 2 - man/CAshiny.Rd | 7 +++-- man/FAMDshiny.Rd | 4 +-- man/Factoshiny-package.Rd | 3 -- man/Factoshiny.Rd |only man/HCPCshiny.Rd | 7 +++-- man/MCAshiny.Rd | 7 +++-- man/MFAshiny.Rd | 7 +++-- man/PCAshiny.Rd | 7 +++-- man/print.CAshiny.Rd | 2 - man/print.FAMDshiny.Rd | 2 - man/print.HCPCshiny.Rd | 2 - man/print.MCAshiny.Rd | 2 - man/print.MFAshiny.Rd | 2 - man/print.PCAshiny.Rd | 2 - 30 files changed, 130 insertions(+), 120 deletions(-)
Title: Dynamic and Interactive Maps
Description: Dynamic and Interactive Maps with R, powered by 'leaflet' <https://leafletjs.com>. 'evolMap' generates a web page with interactive and dynamic maps to which you can add geometric entities (points, lines or colored geographic areas), and/or markers with optional links between them. The dynamic ability of these maps allows their components to evolve over a continuous period of time or by periods.
Author: Modesto Escobar [cre, aut, cph]
,
Carlos Prieto [aut] ,
David Barrios [aut]
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between evolMap versions 1.2.33 dated 2023-03-17 and 1.3.8 dated 2025-01-15
evolMap-1.2.33/evolMap/inst/www/tutorial.css |only evolMap-1.3.8/evolMap/DESCRIPTION | 8 evolMap-1.3.8/evolMap/MD5 | 43 - evolMap-1.3.8/evolMap/R/create_map.R | 106 ++ evolMap-1.3.8/evolMap/R/providers.R | 334 ++++---- evolMap-1.3.8/evolMap/README.md | 2 evolMap-1.3.8/evolMap/inst/www/ca.js | 1 evolMap-1.3.8/evolMap/inst/www/create_map.js | 757 +++++++++++++++----- evolMap-1.3.8/evolMap/inst/www/create_map2.js |only evolMap-1.3.8/evolMap/inst/www/d3.min.js | 4 evolMap-1.3.8/evolMap/inst/www/en.js | 1 evolMap-1.3.8/evolMap/inst/www/es.js | 1 evolMap-1.3.8/evolMap/inst/www/leaflet-providers.js | 432 +++++++---- evolMap-1.3.8/evolMap/inst/www/styles.css | 207 +++++ evolMap-1.3.8/evolMap/inst/www/styles2.css |only evolMap-1.3.8/evolMap/inst/www/tutorial.js | 142 ++- evolMap-1.3.8/evolMap/inst/www/tutorial_ca.js | 3 evolMap-1.3.8/evolMap/inst/www/tutorial_en.js | 8 evolMap-1.3.8/evolMap/inst/www/tutorial_es.js | 8 evolMap-1.3.8/evolMap/man/add_entities.Rd | 3 evolMap-1.3.8/evolMap/man/add_links.Rd | 5 evolMap-1.3.8/evolMap/man/add_markers.Rd | 14 evolMap-1.3.8/evolMap/man/add_periods.Rd | 3 evolMap-1.3.8/evolMap/man/create_map.Rd | 15 24 files changed, 1522 insertions(+), 575 deletions(-)
Title: Generating Funky Heatmaps for Data Frames
Description: Allows generating heatmap-like visualisations for data
frames. Funky heatmaps can be fine-tuned by providing annotations of the
columns and rows, which allows assigning multiple palettes or geometries
or grouping rows and columns together in categories.
Saelens et al. (2019) <doi:10.1038/s41587-019-0071-9>.
Author: Robrecht Cannoodt [aut, cre] ,
Wouter Saelens [aut] ,
Louise Deconinck [ctb] ,
Artuur Couckuyt [ctb] ,
Nick Markov [ctb] ,
Luke Zappia [ctb]
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between funkyheatmap versions 0.5.0 dated 2023-09-23 and 0.5.1 dated 2025-01-15
funkyheatmap-0.5.0/funkyheatmap/man/figures/README-heatmap1-1.png |only funkyheatmap-0.5.1/funkyheatmap/DESCRIPTION | 48 funkyheatmap-0.5.1/funkyheatmap/MD5 | 90 funkyheatmap-0.5.1/funkyheatmap/NEWS.md | 6 funkyheatmap-0.5.1/funkyheatmap/R/calculate_geom_positions.R | 36 funkyheatmap-0.5.1/funkyheatmap/R/compose_ggplot.R | 29 funkyheatmap-0.5.1/funkyheatmap/R/compute_bounds.R | 2 funkyheatmap-0.5.1/funkyheatmap/R/create_legends.R | 281 +- funkyheatmap-0.5.1/funkyheatmap/R/dynbenchmark_data.R | 3 funkyheatmap-0.5.1/funkyheatmap/R/funky_heatmap.R | 46 funkyheatmap-0.5.1/funkyheatmap/R/funkyheatmap-package.R | 20 funkyheatmap-0.5.1/funkyheatmap/R/geom_rounded_rect.R | 1 funkyheatmap-0.5.1/funkyheatmap/R/if_list_to_tibble.R |only funkyheatmap-0.5.1/funkyheatmap/R/is_color.R | 2 funkyheatmap-0.5.1/funkyheatmap/R/make_geom_data_processor.R | 11 funkyheatmap-0.5.1/funkyheatmap/R/position_arguments.R | 27 funkyheatmap-0.5.1/funkyheatmap/R/scib_data.R | 3 funkyheatmap-0.5.1/funkyheatmap/R/verify_column_groups.R | 2 funkyheatmap-0.5.1/funkyheatmap/R/verify_column_info.R | 7 funkyheatmap-0.5.1/funkyheatmap/R/verify_data.R | 2 funkyheatmap-0.5.1/funkyheatmap/R/verify_legends.R | 34 funkyheatmap-0.5.1/funkyheatmap/R/verify_palettes.R | 2 funkyheatmap-0.5.1/funkyheatmap/R/verify_row_groups.R | 2 funkyheatmap-0.5.1/funkyheatmap/R/verify_row_info.R | 4 funkyheatmap-0.5.1/funkyheatmap/README.md | 77 funkyheatmap-0.5.1/funkyheatmap/build/partial.rdb |binary funkyheatmap-0.5.1/funkyheatmap/build/vignette.rds |binary funkyheatmap-0.5.1/funkyheatmap/inst/CITATION | 25 funkyheatmap-0.5.1/funkyheatmap/inst/doc/mtcars.R | 21 funkyheatmap-0.5.1/funkyheatmap/inst/doc/mtcars.Rmd | 42 funkyheatmap-0.5.1/funkyheatmap/inst/doc/mtcars.html | 632 +++-- funkyheatmap-0.5.1/funkyheatmap/inst/doc/scIB.R | 80 funkyheatmap-0.5.1/funkyheatmap/inst/doc/scIB.Rmd | 81 funkyheatmap-0.5.1/funkyheatmap/inst/doc/scIB.html | 1117 ++++++---- funkyheatmap-0.5.1/funkyheatmap/man/dynbenchmark_data.Rd | 2 funkyheatmap-0.5.1/funkyheatmap/man/figures/README-heatmap2-1.png |binary funkyheatmap-0.5.1/funkyheatmap/man/funky_heatmap.Rd | 2 funkyheatmap-0.5.1/funkyheatmap/man/funkyheatmap-package.Rd | 19 funkyheatmap-0.5.1/funkyheatmap/man/geom_rounded_rect.Rd | 90 funkyheatmap-0.5.1/funkyheatmap/man/scib_summary.Rd | 2 funkyheatmap-0.5.1/funkyheatmap/tests/testthat/test-minimal_example.R |only funkyheatmap-0.5.1/funkyheatmap/tests/testthat/test_data |only funkyheatmap-0.5.1/funkyheatmap/vignettes/mtcars.Rmd | 42 funkyheatmap-0.5.1/funkyheatmap/vignettes/scIB.Rmd | 81 44 files changed, 1920 insertions(+), 1051 deletions(-)
Title: Optimally Robust Estimation for Extreme Value Distributions
Description: Optimally robust estimation for extreme value distributions using S4 classes and
methods (based on packages 'distr', 'distrEx', 'distrMod', 'RobAStBase', and
'ROptEst'); the underlying theoretic results can be found in Ruckdeschel and
Horbenko, (2013 and 2012), \doi{10.1080/02331888.2011.628022} and
\doi{10.1007/s00184-011-0366-4}.
Author: Nataliya Horbenko [aut, cph],
Bernhard Spangl [ctb] ,
Sascha Desmettre [ctb] ,
Eugen Massini [ctb] ,
Daria Pupashenko [ctb] ,
Gerald Kroisandt [ctb] ,
Matthias Kohl [aut, cph] ,
Peter Ruckdeschel [cre, aut, cph]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between RobExtremes versions 1.3.1 dated 2024-09-04 and 1.3.2 dated 2025-01-15
RobExtremes-1.3.1/RobExtremes/tests |only RobExtremes-1.3.2/RobExtremes/DESCRIPTION | 18 +++++++------- RobExtremes-1.3.2/RobExtremes/MD5 | 8 ++---- RobExtremes-1.3.2/RobExtremes/inst/NEWS | 7 +++++ RobExtremes-1.3.2/RobExtremes/man/0RobExtremes-package.Rd | 8 +++--- 5 files changed, 23 insertions(+), 18 deletions(-)
Title: Interpolation Grids for Packages of the 'RobASt' - Family of
Packages
Description: Includes 'sysdata.rda' file for packages of the 'RobASt' - family of packages; is
currently used by package 'RobExtremes' only.
Author: Matthias Kohl [aut, cph],
Bernhard Spangl [ctb] ,
Sascha Desmettre [ctb] ,
Eugen Massini [ctb] ,
Mykhailo Pupashenko [ctb] ,
Daria Pupashenko [ctb] ,
Gerald Kroisandt [ctb] ,
Peter Ruckdeschel [cre, cph, aut]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between RobAStRDA versions 1.2.1 dated 2024-01-29 and 1.2.2 dated 2025-01-15
DESCRIPTION | 16 ++++++++-------- MD5 | 10 +++++----- R/sysdata.rda |binary inst/CITATION | 4 ++-- inst/NEWS | 16 ++++++++++++++++ man/0RobRDA-package.Rd | 13 ++++--------- 6 files changed, 35 insertions(+), 24 deletions(-)
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages.
These include e.g. measures like r-squared, intraclass correlation
coefficient (Nakagawa, Johnson & Schielzeth (2017)
<doi:10.1098/rsif.2017.0213>), root mean squared error or functions to
check models for overdispersion, singularity or zero-inflation and
more. Functions apply to a large variety of regression models,
including generalized linear models, mixed effects models and Bayesian
models. References: Lüdecke et al. (2021) <doi:10.21105/joss.03139>.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Remi Theriault [aut, ctb] ,
Vincent Arel-Bundock [ctb] ,
Martin J [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between performance versions 0.12.4 dated 2024-10-18 and 0.13.0 dated 2025-01-15
DESCRIPTION | 28 ++-- MD5 | 173 +++++++++++++-------------- NAMESPACE | 7 - NEWS.md | 34 +++++ R/binned_residuals.R | 5 R/check_autocorrelation.R | 2 R/check_clusterstructure.R | 3 R/check_collinearity.R | 52 ++++---- R/check_concurvity.R | 1 R/check_convergence.R | 5 R/check_dag.R | 2 R/check_distribution.R | 9 - R/check_factorstructure.R | 7 - R/check_heterogeneity_bias.R | 11 - R/check_heteroscedasticity.R | 9 - R/check_homogeneity.R | 10 - R/check_htest.R | 1 R/check_itemscale.R | 4 R/check_model.R | 122 +++++++++---------- R/check_model_diagnostics.R | 33 +---- R/check_multimodal.R | 1 R/check_normality.R | 7 - R/check_outliers.R | 155 +++++++++--------------- R/check_overdispersion.R | 5 R/check_predictions.R | 38 ++--- R/check_singularity.R | 6 R/check_sphericity.R | 3 R/compare_performance.R | 2 R/cronbachs_alpha.R | 3 R/icc.R | 3 R/item_difficulty.R | 1 R/looic.R | 1 R/model_performance.R | 1 R/model_performance.bayesian.R | 1 R/model_performance.lavaan.R | 1 R/model_performance.lm.R | 5 R/model_performance.mixed.R | 1 R/model_performance_default.R | 1 R/performance_accuracy.R | 1 R/performance_aicc.R | 77 ++---------- R/performance_hosmer.R | 1 R/performance_logloss.R | 1 R/performance_mae.R | 3 R/performance_mse.R | 3 R/performance_pcp.R | 2 R/performance_roc.R | 39 ++++-- R/performance_score.R | 3 R/print-methods.R | 5 R/r2.R | 47 ++----- R/r2_bayes.R | 3 R/r2_coxsnell.R | 18 +- R/r2_loo.R | 1 R/r2_mcfadden.R | 24 +-- R/r2_nagelkerke.R | 9 - R/r2_nakagawa.R | 2 R/simulate_residuals.R | 7 - R/test_bf.R | 2 R/test_likelihoodratio.R | 2 R/test_performance.R | 7 - R/test_vuong.R | 10 - R/test_wald.R | 1 build/partial.rdb |binary man/binned_residuals.Rd | 7 - man/check_collinearity.Rd | 18 ++ man/check_dag.Rd | 2 man/check_distribution.Rd | 4 man/check_heterogeneity_bias.Rd | 10 - man/check_heteroscedasticity.Rd | 8 - man/check_homogeneity.Rd | 8 - man/check_model.Rd | 22 ++- man/check_normality.Rd | 2 man/check_outliers.Rd | 6 man/check_predictions.Rd | 14 +- man/performance-package.Rd | 12 - man/performance_aicc.Rd | 10 + man/performance_roc.Rd | 19 ++ tests/testthat/_snaps/compare_performance.md |only tests/testthat/_snaps/pkg-ivreg.md | 10 + tests/testthat/test-check_collinearity.R | 23 +++ tests/testthat/test-check_model.R | 4 tests/testthat/test-check_outliers.R | 17 ++ tests/testthat/test-check_overdispersion.R | 2 tests/testthat/test-check_residuals.R | 8 - tests/testthat/test-check_zeroinflation.R | 22 +-- tests/testthat/test-compare_performance.R | 7 + tests/testthat/test-performance_roc.R | 23 +++ tests/testthat/test-pkg-fixest.R | 1 tests/testthat/test-r2_mcfadden.R | 42 ++++++ 88 files changed, 645 insertions(+), 677 deletions(-)
Title: Reading and Writing Open Data Format Files
Description: The Open Data Format (ODF) is a new, non-proprietary, multilingual, metadata enriched, and zip-compressed data format with metadata structured in the Data Documentation Initiative (DDI) Codebook standard. This package allows reading and writing of data files in the Open Data Format (ODF) in R, and displaying metadata in different languages. For further information on the Open Data Format, see <https://opendataformat.github.io/>.
Author: Tom Hartl [aut, cre] ,
Claudia Saalbach [ctb]
Maintainer: Tom Hartl <thartl@diw.de>
Diff between opendataformat versions 2.1.1 dated 2024-12-04 and 2.1.2 dated 2025-01-15
opendataformat-2.1.1/opendataformat/data/data_odf.rda |only opendataformat-2.1.1/opendataformat/man/merge.odf.Rd |only opendataformat-2.1.1/opendataformat/vignettes/opendataformat-tom-D15S-2.html |only opendataformat-2.1.1/opendataformat/vignettes/opendataformat-tom-D15S.html |only opendataformat-2.1.2/opendataformat/DESCRIPTION | 10 opendataformat-2.1.2/opendataformat/MD5 | 43 opendataformat-2.1.2/opendataformat/NAMESPACE | 3 opendataformat-2.1.2/opendataformat/R/as_odf_tbl.R |only opendataformat-2.1.2/opendataformat/R/docu_odf.R | 22 opendataformat-2.1.2/opendataformat/R/merge.R | 37 opendataformat-2.1.2/opendataformat/R/opendataformat-package.R | 9 opendataformat-2.1.2/opendataformat/R/read_odf.R | 29 opendataformat-2.1.2/opendataformat/data/data_odf.RData |only opendataformat-2.1.2/opendataformat/inst/doc/opendataformat.R | 29 opendataformat-2.1.2/opendataformat/inst/doc/opendataformat.Rmd | 40 opendataformat-2.1.2/opendataformat/inst/doc/opendataformat.html | 449 +++++----- opendataformat-2.1.2/opendataformat/man/as_odf_tbl.Rd |only opendataformat-2.1.2/opendataformat/man/merge.odf_tbl.Rd |only opendataformat-2.1.2/opendataformat/man/opendataformat-package.Rd | 13 opendataformat-2.1.2/opendataformat/man/read_odf.Rd | 17 opendataformat-2.1.2/opendataformat/tests/testthat/test-as_odf_tbl.R |only opendataformat-2.1.2/opendataformat/tests/testthat/test-docu_odf.R | 4 opendataformat-2.1.2/opendataformat/tests/testthat/test-read_odf.R | 20 opendataformat-2.1.2/opendataformat/tests/testthat/testdata/data_odf.RData |binary opendataformat-2.1.2/opendataformat/tests/testthat/testdata/data_odf_with_default.RData |binary opendataformat-2.1.2/opendataformat/tests/testthat/testdata/data_odf_with_missings.RData |binary opendataformat-2.1.2/opendataformat/vignettes/opendataformat.Rmd | 40 27 files changed, 485 insertions(+), 280 deletions(-)
More information about opendataformat at CRAN
Permanent link
Title: Nicely Formatted Contingency Tables and Frequency Tables
Description: Nicely formatted frequency tables and contingency tables (1-way, 2-way, 3-way and 4-way tables), that can easily be exported to HTML or 'Office' documents. Designed to work with pipes.
Author: Mans Thulin [aut, cre],
Kajsa Grind [aut],
Stefan Furne [aut]
Maintainer: Mans Thulin <mans@statistikkonsult.com>
Diff between ivo.table versions 0.5 dated 2024-08-28 and 0.6 dated 2025-01-15
DESCRIPTION | 10 ++++-- MD5 | 19 ++++++++----- NEWS.md | 3 ++ R/ivo_tables.R | 65 ++++++++++++++++++++++++--------------------- build |only inst/doc |only man/ivo_flextable_theme.Rd | 5 ++- man/ivo_table.Rd | 4 ++ man/ivo_table_add_mask.Rd | 2 - man/ivo_table_masked.Rd | 3 ++ vignettes |only 11 files changed, 68 insertions(+), 43 deletions(-)
Title: Tidy and Geospatial Kernel Smoothing
Description: Extensions of the kernel smoothing functions from the 'ks' package for compatibility with the tidyverse and geospatial ecosystems <doi:10.1007/s00180-024-01543-9>.
Author: Tarn Duong [aut, cre]
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between eks versions 1.0.6 dated 2024-11-29 and 1.0.7 dated 2025-01-15
CHANGELOG | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- R/sf-ks-prelim.R | 27 +++++++++++++++++---------- R/sf-ks.R | 2 ++ R/tidy-ks-prelim.R | 5 +++-- R/tidy-ks.R | 1 + inst/doc/tidysf_kde.html | 4 ++-- 9 files changed, 42 insertions(+), 27 deletions(-)
Title: Utility Functions and Development Tools for the Admiral Package
Family
Description: Utility functions to check data, variables and conditions for
functions used in 'admiral' and 'admiral' extension packages.
Additional utility helper functions to assist developers with
maintaining documentation, testing and general upkeep of 'admiral' and
'admiral' extension packages.
Author: Ben Straub [aut, cre],
Stefan Bundfuss [aut] ,
Jeffrey Dickinson [aut],
Ross Farrugia [aut],
Fanny Gautier [aut],
Edoardo Mancini [aut] ,
Sadchla Mascary [aut],
Gordon Miller [aut],
Daniel Sjoberg [aut] ,
Stefan Thoma [aut] ,
Kangjie Zhang [aut],
Zel [...truncated...]
Maintainer: Ben Straub <ben.x.straub@gsk.com>
Diff between admiraldev versions 1.1.0 dated 2024-06-06 and 1.2.0 dated 2025-01-15
admiraldev-1.1.0/admiraldev/man/assert_function_param.Rd |only admiraldev-1.1.0/admiraldev/man/assert_has_variables.Rd |only admiraldev-1.1.0/admiraldev/man/assert_named_exprs.Rd |only admiraldev-1.2.0/admiraldev/DESCRIPTION | 51 - admiraldev-1.2.0/admiraldev/MD5 | 53 - admiraldev-1.2.0/admiraldev/NAMESPACE | 6 admiraldev-1.2.0/admiraldev/NEWS.md | 49 admiraldev-1.2.0/admiraldev/R/admiraldev-package.R | 4 admiraldev-1.2.0/admiraldev/R/assertions.R | 213 ++-- admiraldev-1.2.0/admiraldev/R/dev_utilities.R | 14 admiraldev-1.2.0/admiraldev/R/get.R | 12 admiraldev-1.2.0/admiraldev/R/lifecycle_admiral.R |only admiraldev-1.2.0/admiraldev/R/quo.R | 12 admiraldev-1.2.0/admiraldev/README.md | 4 admiraldev-1.2.0/admiraldev/inst/WORDLIST | 20 admiraldev-1.2.0/admiraldev/inst/doc/package_extensions.html | 2 admiraldev-1.2.0/admiraldev/inst/doc/rcmd_issues.Rmd | 6 admiraldev-1.2.0/admiraldev/inst/doc/rcmd_issues.html | 8 admiraldev-1.2.0/admiraldev/man/admiraldev-package.Rd | 15 admiraldev-1.2.0/admiraldev/man/assert_list_element.Rd | 41 admiraldev-1.2.0/admiraldev/man/assert_numeric_vector.Rd | 11 admiraldev-1.2.0/admiraldev/man/assert_unit.Rd | 44 admiraldev-1.2.0/admiraldev/man/deprecate_inform.Rd |only admiraldev-1.2.0/admiraldev/man/get_source_vars.Rd | 4 admiraldev-1.2.0/admiraldev/man/replace_values_by_names.Rd | 4 admiraldev-1.2.0/admiraldev/man/vars2chr.Rd | 6 admiraldev-1.2.0/admiraldev/tests/testthat/_snaps/assertions.md | 114 +- admiraldev-1.2.0/admiraldev/tests/testthat/_snaps/lifecycle_admiral.md |only admiraldev-1.2.0/admiraldev/tests/testthat/test-assertions.R | 510 ++++------ admiraldev-1.2.0/admiraldev/tests/testthat/test-lifecycle_admiral.R |only admiraldev-1.2.0/admiraldev/vignettes/rcmd_issues.Rmd | 6 31 files changed, 673 insertions(+), 536 deletions(-)
Title: 'Rcpp' Bindings for the 'fast_float' Header-Only Library for
Number Parsing
Description: Converting ascii text into (floating-point) numeric values is a
very common problem. The 'fast_float' header-only C++ library by Daniel Lemire
does it very well and very fast at up to or over to 1 gigabyte per second as
described in more detail in <doi:10.1002/spe.2984>. 'fast_float' is
licensed under the Apache 2.0 license and provided here for use by other R
packages via a simple 'LinkingTo:' statement.
Author: Dirk Eddelbuettel [aut, cre] ,
Brendan Knapp [aut] ,
Daniel Lemire [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppFastFloat versions 0.0.4 dated 2023-01-20 and 0.0.5 dated 2025-01-15
RcppFastFloat-0.0.4/RcppFastFloat/inst/include/fast_float/simple_decimal_conversion.h |only RcppFastFloat-0.0.5/RcppFastFloat/ChangeLog | 28 RcppFastFloat-0.0.5/RcppFastFloat/DESCRIPTION | 26 RcppFastFloat-0.0.5/RcppFastFloat/MD5 | 28 RcppFastFloat-0.0.5/RcppFastFloat/README.md | 2 RcppFastFloat-0.0.5/RcppFastFloat/inst/NEWS.Rd | 9 RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/ascii_number.h | 522 +++ RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/bigint.h | 264 + RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/constexpr_feature_detect.h |only RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/decimal_to_binary.h | 141 - RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/digit_comparison.h | 206 - RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/fast_float.h | 86 RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/fast_table.h | 1327 +++++----- RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/float_common.h | 867 +++++- RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/parse_number.h | 395 ++ RcppFastFloat-0.0.5/RcppFastFloat/src/Makevars | 4 16 files changed, 2542 insertions(+), 1363 deletions(-)
Title: Fast and Efficient Processing of PAM Data
Description: Processing Chlorophyll Fluorescence & P700 Absorbance data generated by WALZ hardware. Four models are provided for the regression of Pi curves, which can be compared with each other in order to select the most suitable model for the data set. Control plots ensure the successful verification of each regression. Bundled output of alpha, ETRmax, Ik etc. enables fast and reliable further processing of the data.
Author: Julien Boehm [cre, aut] ,
Philipp Schrag [aut]
Maintainer: Julien Boehm <julien.boehm@uni-rostock.de>
Diff between pam versions 1.0.0 dated 2025-01-14 and 1.0.1 dated 2025-01-15
DESCRIPTION | 6 - MD5 | 29 +++--- build/partial.rdb |binary inst/CITATION |only tests/testthat/Rplots.pdf |binary tests/testthat/test-compare_regression_models_etr_I.R | 27 ++++-- tests/testthat/test-compare_regression_models_etr_II.R | 28 ++++-- tests/testthat/test-compare_regression_models_total.R | 71 +++++++++++----- tests/testthat/test-eilers_peeters_etr_I.R | 72 ++++++++++------- tests/testthat/test-eilers_peeters_etr_II.R | 70 ++++++++++------ tests/testthat/test-platt_etr_I.R | 70 ++++++++++------ tests/testthat/test-platt_etr_II.R | 70 ++++++++++------ tests/testthat/test-vollenweider_etr_I.R | 69 +++++++++------- tests/testthat/test-vollenweider_etr_II.R | 70 ++++++++++------ tests/testthat/test-walsby_etr_I.R | 60 ++++++++------ tests/testthat/test-walsby_etr_II.R | 60 ++++++++------ 16 files changed, 434 insertions(+), 268 deletions(-)
Title: Analysis of MHC Data in Non-Model Species
Description: Fifteen tools for bioinformatics processing and analysis of major
histocompatibility complex (MHC) data. The functions are tailored for amplicon data
sets that have been filtered using the dada2 method (for more information on
dada2, visit <https://benjjneb.github.io/dada2/> ), but even other types of data
sets can be analyzed.
The ReplMatch() function matches replicates in data sets in order to evaluate
genotyping success.
The GetReplTable() and GetReplStats() functions perform such an evaluation.
The CreateFas() function creates a fasta file with all the sequences in the data
set.
The CreateSamplesFas() function creates individual fasta files for each sample in
the data set.
The DistCalc() function calculates Grantham, Sandberg, or p-distances from pairwise
comparisons of all sequences in a data set, and mean distances of all pairwise
comparisons within each sample in a data set. The function additionally outputs five
tables with physico-chemical z-descriptor values (based on S [...truncated...]
Author: Jacob Roved [aut, cre]
Maintainer: Jacob Roved <jacob.roved@biol.lu.se>
Diff between MHCtools versions 1.5.3 dated 2023-07-08 and 1.5.4 dated 2025-01-15
MHCtools-1.5.3/MHCtools/R/BootKmeans_func_20210910.R |only MHCtools-1.5.3/MHCtools/R/ClusterMatch_func_20210910.R |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_10_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_1_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_2_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_3_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_4_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_5_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_6_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_7_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_8_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_9_20210913.RData |only MHCtools-1.5.4/MHCtools/DESCRIPTION | 10 - MHCtools-1.5.4/MHCtools/LICENSE | 2 MHCtools-1.5.4/MHCtools/MD5 | 92 +++++----- MHCtools-1.5.4/MHCtools/NEWS.md | 13 + MHCtools-1.5.4/MHCtools/R/BootKmeans_func_20250108.R |only MHCtools-1.5.4/MHCtools/R/ClusterMatch_func_20250108.R |only MHCtools-1.5.4/MHCtools/R/CreateFas_func_20230321.R | 9 MHCtools-1.5.4/MHCtools/R/CreateHpltOccTable_func_20221010.R | 9 MHCtools-1.5.4/MHCtools/R/CreateSamplesFas_func_20230321.R | 9 MHCtools-1.5.4/MHCtools/R/DistCalc_func_20230707.R | 20 -- MHCtools-1.5.4/MHCtools/R/GetHpltStats_func_20200915.R | 9 MHCtools-1.5.4/MHCtools/R/GetHpltTable_func_20200915.R | 9 MHCtools-1.5.4/MHCtools/R/GetReplStats_func_20200914.R | 9 MHCtools-1.5.4/MHCtools/R/GetReplTable_func_20200914.R | 9 MHCtools-1.5.4/MHCtools/R/HpltFind_func_20230321.R | 9 MHCtools-1.5.4/MHCtools/R/HpltMatch_func_20230322.R | 9 MHCtools-1.5.4/MHCtools/R/NestTablesXL_func_20221012.R | 9 MHCtools-1.5.4/MHCtools/R/PapaDiv_func_20230630.R | 9 MHCtools-1.5.4/MHCtools/R/ReplMatch_func_20230321.R | 11 - MHCtools-1.5.4/MHCtools/R/zzz.R | 4 MHCtools-1.5.4/MHCtools/README.md | 12 - MHCtools-1.5.4/MHCtools/data/k_summary_table.rda |binary MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_10_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_1_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_2_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_3_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_4_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_5_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_6_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_7_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_8_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_9_20250115.RData |only MHCtools-1.5.4/MHCtools/man/BootKmeans.Rd | 22 +- MHCtools-1.5.4/MHCtools/man/ClusterMatch.Rd | 13 - MHCtools-1.5.4/MHCtools/man/CreateFas.Rd | 9 MHCtools-1.5.4/MHCtools/man/CreateHpltOccTable.Rd | 9 MHCtools-1.5.4/MHCtools/man/CreateSamplesFas.Rd | 9 MHCtools-1.5.4/MHCtools/man/DistCalc.Rd | 20 -- MHCtools-1.5.4/MHCtools/man/GetHpltStats.Rd | 9 MHCtools-1.5.4/MHCtools/man/GetHpltTable.Rd | 9 MHCtools-1.5.4/MHCtools/man/GetReplStats.Rd | 9 MHCtools-1.5.4/MHCtools/man/GetReplTable.Rd | 9 MHCtools-1.5.4/MHCtools/man/HpltFind.Rd | 9 MHCtools-1.5.4/MHCtools/man/HpltMatch.Rd | 9 MHCtools-1.5.4/MHCtools/man/NestTablesXL.Rd | 9 MHCtools-1.5.4/MHCtools/man/PapaDiv.Rd | 9 MHCtools-1.5.4/MHCtools/man/ReplMatch.Rd | 9 59 files changed, 206 insertions(+), 220 deletions(-)
Title: Stationary Vine Copula Models
Description: Provides functionality to fit and simulate from stationary vine
copula models for time series, see Nagler et al. (2022)
<doi:10.1016/j.jeconom.2021.11.015>.
Author: Thomas Nagler [aut, cre]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between svines versions 0.2.3 dated 2024-01-18 and 0.2.4 dated 2025-01-15
DESCRIPTION | 8 +- MD5 | 34 ++++----- NEWS.md | 6 - R/RcppExports.R | 4 - R/svine.R | 6 - R/svinecop.R | 8 +- README.md | 53 +++++++------- build/partial.rdb |binary inst/include/svines/implementation/svine_selector.ipp | 13 +++ man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/svine.Rd | 4 - man/svine_dist.Rd | 2 man/svinecop.Rd | 2 man/svinecop_dist.Rd | 2 src/RcppExports.cpp | 16 ++-- src/wrappers_svine.cpp | 66 ++++++++---------- 18 files changed, 113 insertions(+), 111 deletions(-)
Title: Optimally Robust Estimation
Description: R infrastructure for optimally robust estimation in general smoothly
parameterized models using S4 classes and methods as described Kohl, M.,
Ruckdeschel, P., and Rieder, H. (2010), <doi:10.1007/s10260-010-0133-0>, and in
Rieder, H., Kohl, M., and Ruckdeschel, P. (2008), <doi:10.1007/s10260-007-0047-7>.
Author: Matthias Kohl [cre, cph] ,
Mykhailo Pupashenko [ctb] ,
Gerald Kroisandt [ctb] ,
Peter Ruckdeschel [aut, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between ROptEst versions 1.3.4 dated 2024-09-02 and 1.3.5 dated 2025-01-15
DESCRIPTION | 18 +++++++++--------- MD5 | 8 ++++---- build/partial.rdb |binary inst/NEWS | 7 +++++++ man/0ROptEst-package.Rd | 8 ++++---- 5 files changed, 24 insertions(+), 17 deletions(-)
More information about SampleSizeSingleArmSurvival at CRAN
Permanent link
Title: Tree Taper Curves and Sorting Based on 'TapeR'
Description: Providing new german-wide 'TapeR' Models and functions for their
evaluation. Included are the most common tree species in Germany (Norway
spruce, Scots pine, European larch, Douglas fir, Silver fir as well as
European beech, Common/Sessile oak and Red oak). Many other species are mapped
to them so that 36 tree species / groups can be processed. Single trees are
defined by species code, one or multiple diameters in arbitrary measuring
height and tree height. The functions then provide information on diameters
along the stem, bark thickness, height of diameters, volume of the total or
parts of the trunk and total and component above-ground biomass. It is also
possible to calculate assortments from the taper curves. Uncertainty
information is provided for diameter, volume and component biomass estimation.
Author: Christian Vonderach [aut, cre],
Edgar Kublin [aut],
Gerald Kaendler [aut]
Maintainer: Christian Vonderach <christian.vonderach@forst.bwl.de>
Diff between TapeS versions 0.13.0 dated 2024-11-26 and 0.13.1 dated 2025-01-15
TapeS-0.13.0/TapeS/inst/NEWS.rd |only TapeS-0.13.1/TapeS/DESCRIPTION | 10 TapeS-0.13.1/TapeS/MD5 | 13 TapeS-0.13.1/TapeS/NEWS.md | 336 ++++++++--------- TapeS-0.13.1/TapeS/R/tprVolume.r | 641 ++++++++++++++++----------------- TapeS-0.13.1/TapeS/build/partial.rdb |binary TapeS-0.13.1/TapeS/inst/doc/tapes.html | 4 TapeS-0.13.1/TapeS/man/tprVolume.Rd | 4 8 files changed, 506 insertions(+), 502 deletions(-)
Title: Work with Open Road Traffic Casualty Data from Great Britain
Description: Tools to help download, process and analyse the UK road collision data collected using the
'STATS19' form. The datasets are provided as 'CSV' files with detailed road safety information about the
circumstances of car crashes and other incidents on the roads resulting in casualties in Great Britain
from 1979 to present. Tables are available on 'colissions' with the circumstances (e.g. speed limit
of road), information about 'vehicles' involved (e.g. type of vehicle), and 'casualties' (e.g. age).
The statistics relate only to events on public roads that were reported
to the police, and subsequently recorded, using the 'STATS19' collision reporting form. See
the Department for Transport website
<https://www.data.gov.uk/dataset/cb7ae6f0-4be6-4935-9277-47e5ce24a11f/road-accidents-safety-data> for more
information on these datasets.
The package is described in a paper in the Journal of Open Source Software
(Lovelace et al. 2019) <doi:10.21105/joss.01181>.
See
Gilardi et al. (202 [...truncated...]
Author: Robin Lovelace [aut, cre] ,
Malcolm Morgan [aut] ,
Layik Hama [aut] ,
Mark Padgham [aut] ,
David Ranzolin [rev],
Adam Sparks [rev, ctb] ,
Ivo Wengraf [ctb],
RAC Foundation [fnd]
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stats19 versions 3.3.0 dated 2025-01-12 and 3.3.1 dated 2025-01-15
DESCRIPTION | 6 MD5 | 23 NEWS.md | 4 R/dl.R | 14 README.md | 289 ++--- inst/doc/blog.html | 659 ++++++----- inst/doc/stats19-training-setup.html | 250 ++-- inst/doc/stats19-training.html | 1260 ++++++++++++++-------- inst/doc/stats19-vehicles.html | 243 ++-- inst/doc/stats19.html | 1764 +++++++++++++++++-------------- man/figures/README-crash-date-plot-1.png |binary man/figures/README-crash-time-plot-1.png |binary man/figures/README-unnamed-chunk-4-1.png |only 13 files changed, 2674 insertions(+), 1838 deletions(-)
Title: Landscape Connectivity, Habitat, and Protected Area Networks
Description: Given a landscape resistance surface, creates minimum planar graph
(Fall et al. (2007) <doi:10.1007/s10021-007-9038-7>) and grains of connectivity
(Galpern et al. (2012) <doi:10.1111/j.1365-294X.2012.05677.x>) models that can be
used to calculate effective distances for landscape connectivity at multiple scales.
Documentation is provided by several vignettes, and a paper
(Chubaty, Galpern & Doctolero (2020) <doi:10.1111/2041-210X.13350>).
Author: Paul Galpern [aut, cph] ,
Sam Doctolero [aut],
Alex M Chubaty [aut, cre]
Maintainer: Alex M Chubaty <achubaty@for-cast.ca>
Diff between grainscape versions 0.4.4 dated 2023-04-20 and 0.5.0 dated 2025-01-15
DESCRIPTION | 23 MD5 | 166 - NEWS.md | 42 R/GOC.R | 32 R/MPG.R | 36 R/RcppExports.R | 14 R/classes.R | 10 R/corridor.R | 41 R/distance.R | 2 R/export.R | 91 R/ggGS.R | 12 R/grainscape-deprecated.R | 6 R/graphdf.R | 41 R/habitatConnectivityEngine.R | 22 R/patchFilter.R | 7 R/plot.R | 13 R/point.R | 18 R/theme_grainscape.R | 4 R/threshold.R | 8 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 22 inst/doc/MPG_algorithm.R | 90 inst/doc/MPG_algorithm.Rmd | 261 +- inst/doc/MPG_algorithm.pdf |binary inst/doc/grainscape_vignette.R | 27 inst/doc/grainscape_vignette.Rmd | 26 inst/doc/grainscape_vignette.pdf |binary inst/examples/example_threshold.R | 2 inst/extdata/issue72_patchID.tif |only inst/extdata/issue72_resistance.tif |only inst/include/DataStruct.h | 223 +- inst/include/Engine.h | 118 - man/MPG.Rd | 10 man/corridor.Rd | 4 man/distance.Rd | 2 man/dot-abbrev.Rd |only man/export.Rd | 8 man/ggGS.Rd | 12 man/goc-class.Rd | 4 man/grainscape-deprecated.Rd | 4 man/grainscape-package.Rd | 2 man/habConnEngine.Rd | 4 man/habConnRcpp.Rd | 12 man/patchFilter.Rd | 7 man/plot.Rd | 5 man/point.Rd | 4 man/show.Rd | 3 man/theme_grainscape.Rd | 4 man/threshold.Rd | 2 src/Engine.cpp | 998 +++++----- src/grainscape_init.c | 1 src/rcpp_HabConnEngine.cpp | 67 tests/test-all.R | 7 tests/testthat/test-MPG.R | 8 tests/testthat/test-corridor-distance-point.R | 22 tests/testthat/test-export.R |only vignettes/MPG_algorithm.Rmd | 261 +- vignettes/MPG_algorithm_files |only vignettes/bibliography.bib | 462 +--- vignettes/grainscape_vignette.Rmd | 26 vignettes/grainscape_vignette_files/figure-latex/figure_03-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_04-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_05-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_06-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_07-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_08-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_09-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_10-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_11-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_12-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_13-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_14-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_15-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_16-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_17-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_18-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_19-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_20-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_21-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_22-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_23-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_24-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_25-1.pdf |binary 85 files changed, 1708 insertions(+), 1590 deletions(-)
Title: GLCM Textures of Raster Layers
Description: Calculates grey level co-occurrence matrix (GLCM) based texture measures (Hall-Beyer (2017) <https://prism.ucalgary.ca/bitstream/handle/1880/51900/texture%20tutorial%20v%203_0%20180206.pdf>; Haralick et al. (1973) <doi:10.1109/TSMC.1973.4309314>) of raster layers using a sliding rectangular window. It also includes functions to quantize a raster into grey levels as well as tabulate a glcm and calculate glcm texture metrics for a matrix.
Author: Alexander Ilich [aut, cre]
Maintainer: Alexander Ilich <ailich@usf.edu>
Diff between GLCMTextures versions 0.4.2 dated 2024-08-19 and 0.5 dated 2025-01-15
DESCRIPTION | 13 - MD5 | 40 +-- R/glcm_metrics.R | 93 ++++--- R/glcm_textures.R | 274 +++++++++++----------- R/make_glcm.R | 72 +++--- R/quantize_raster.R | 145 ++++++------ README.md | 47 +-- build/vignette.rds |binary inst/doc/README.R | 12 - inst/doc/README.html | 60 +---- inst/testdata |only man/figures/README-elevation-1.png |binary man/figures/README-textures1-1.png |binary man/figures/README-textures3-1.png |binary man/fragments/README_Frag.Rmd | 444 ++++++++++++++++++------------------- man/glcm_metrics.Rd | 7 man/glcm_textures.Rd | 17 - man/make_glcm.Rd | 2 man/quantize_raster.Rd | 15 - src/glcm_cpp_functions.cpp | 10 tests |only 21 files changed, 639 insertions(+), 612 deletions(-)
Title: Interactively Visualize Structural Equation Modeling Diagrams
Description: It is an R package and web-based application, allowing users to perform interactive and reproducible visualizations of path diagrams for structural equation modeling (SEM) and networks using the 'ggplot2' engine. Its app (built with 'shiny') provides an interface that allows extensive customization, and creates CSV outputs, which can then be used to recreate the figures either using the web app or script-based workflow.
Author: Seung Hyun Min [aut, cre]
Maintainer: Seung Hyun Min <seung.min@mail.mcgill.ca>
Diff between ggsem versions 0.2.0 dated 2025-01-07 and 0.2.1 dated 2025-01-15
DESCRIPTION | 8 MD5 | 18 NAMESPACE | 1 R/draw_lines.R | 14 R/draw_loops.R | 4 R/draw_points.R | 9 R/launch.R | 1 inst/shiny/app.R | 1783 +++++++++++++++------ inst/shiny/rsconnect/shinyapps.io/smin95/ggsem.dcf | 2 man/draw_loops.Rd | 2 10 files changed, 1335 insertions(+), 507 deletions(-)
Title: 'C++' Standard Template Library Containers
Description: Use 'C++' Standard Template Library containers interactively in R. Includes sets, unordered sets, multisets, unordered multisets, maps,
unordered maps, multimaps, unordered multimaps, stacks, queues, priority queues, vectors, deques, forward lists, and lists.
Author: Christian Dueben [aut, cre]
Maintainer: Christian Dueben <cdueben.ml+cran@proton.me>
Diff between cppcontainers versions 1.0.3 dated 2025-01-09 and 1.0.4 dated 2025-01-15
DESCRIPTION | 6 - MD5 | 106 ++++++++++++++++----------------- NEWS.md | 3 R/map.R | 2 man/cpp_map.Rd | 2 tests/testthat/test-assign.R | 1 tests/testthat/test-at.R | 1 tests/testthat/test-back.R | 1 tests/testthat/test-bucket_count.R | 1 tests/testthat/test-capacity.R | 1 tests/testthat/test-clear.R | 1 tests/testthat/test-contains.R | 1 tests/testthat/test-count.R | 1 tests/testthat/test-emplace.R | 1 tests/testthat/test-emplace_after.R | 1 tests/testthat/test-emplace_back.R | 1 tests/testthat/test-emplace_front.R | 1 tests/testthat/test-empty.R | 1 tests/testthat/test-erase.R | 1 tests/testthat/test-erase_after.R | 1 tests/testthat/test-flip.R | 1 tests/testthat/test-front.R | 1 tests/testthat/test-insert.R | 1 tests/testthat/test-insert_after.R | 1 tests/testthat/test-insert_or_assign.R | 1 tests/testthat/test-load_factor.R | 1 tests/testthat/test-max_bucket_count.R | 1 tests/testthat/test-max_load_factor.R | 1 tests/testthat/test-max_size.R | 1 tests/testthat/test-merge.R | 1 tests/testthat/test-operators.R | 1 tests/testthat/test-pop.R | 1 tests/testthat/test-pop_back.R | 1 tests/testthat/test-pop_front.R | 1 tests/testthat/test-print.R | 1 tests/testthat/test-push.R | 1 tests/testthat/test-push_back.R | 1 tests/testthat/test-push_front.R | 1 tests/testthat/test-rehash.R | 1 tests/testthat/test-remove..R | 1 tests/testthat/test-reserve.R | 1 tests/testthat/test-resize.R | 1 tests/testthat/test-reverse.R | 1 tests/testthat/test-shrink_to_fit.R | 1 tests/testthat/test-size.R | 1 tests/testthat/test-sort.R | 1 tests/testthat/test-sorting.R | 1 tests/testthat/test-splice.R | 1 tests/testthat/test-splice_after.R | 1 tests/testthat/test-to_r.R | 1 tests/testthat/test-top.R | 1 tests/testthat/test-try_emplace.R | 1 tests/testthat/test-type.R | 1 tests/testthat/test-unique.R | 1 54 files changed, 110 insertions(+), 58 deletions(-)
Title: Color Calculations with Emphasis on Spectral Data
Description: Calculate with spectral properties of light sources, materials, cameras, eyes, and scanners.
Build complex systems from simpler parts using a spectral product algebra. For light sources,
compute CCT, CRI, and SSI. For object colors, compute optimal colors and Logvinenko coordinates.
Work with the standard CIE illuminants and color matching functions, and read spectra from
text files, including CGATS files. Estimate a spectrum from its response. A user guide and 9 vignettes are included.
Author: Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between colorSpec versions 1.5-0 dated 2024-01-28 and 1.6-0 dated 2025-01-15
colorSpec-1.5-0/colorSpec/R/logging-levels.R |only colorSpec-1.6-0/colorSpec/DESCRIPTION | 12 colorSpec-1.6-0/colorSpec/MD5 | 129 - colorSpec-1.6-0/colorSpec/NAMESPACE | 57 colorSpec-1.6-0/colorSpec/NEWS.md | 6 colorSpec-1.6-0/colorSpec/R/CGATS.R | 46 colorSpec-1.6-0/colorSpec/R/atmosphere.R | 12 colorSpec-1.6-0/colorSpec/R/basic.R | 14 colorSpec-1.6-0/colorSpec/R/colorSpec.CCT.R | 4 colorSpec-1.6-0/colorSpec/R/colorSpec.CRI.R | 234 +- colorSpec-1.6-0/colorSpec/R/colorSpec.R | 78 colorSpec-1.6-0/colorSpec/R/colorSpec.SSI.R | 14 colorSpec-1.6-0/colorSpec/R/colorSpec.actinometric.R | 8 colorSpec-1.6-0/colorSpec/R/colorSpec.calibrate.R | 38 colorSpec-1.6-0/colorSpec/R/colorSpec.comp.R | 38 colorSpec-1.6-0/colorSpec/R/colorSpec.emulate.R | 32 colorSpec-1.6-0/colorSpec/R/colorSpec.interpolate.R | 8 colorSpec-1.6-0/colorSpec/R/colorSpec.invert.R | 46 colorSpec-1.6-0/colorSpec/R/colorSpec.metrics.R | 10 colorSpec-1.6-0/colorSpec/R/colorSpec.ops.R | 74 colorSpec-1.6-0/colorSpec/R/colorSpec.optimal.R | 60 colorSpec-1.6-0/colorSpec/R/colorSpec.photometric.R | 2 colorSpec-1.6-0/colorSpec/R/colorSpec.plot.R | 370 +-- colorSpec-1.6-0/colorSpec/R/colorSpec.product.R | 66 colorSpec-1.6-0/colorSpec/R/colorSpec.ptransform.R | 12 colorSpec-1.6-0/colorSpec/R/colorSpec.radiometric.R | 8 colorSpec-1.6-0/colorSpec/R/colorSpec.read.R | 72 colorSpec-1.6-0/colorSpec/R/colorSpec.summary.R | 2 colorSpec-1.6-0/colorSpec/R/events.R | 20 colorSpec-1.6-0/colorSpec/R/interp.R | 18 colorSpec-1.6-0/colorSpec/R/logger.R |only colorSpec-1.6-0/colorSpec/R/logging.R | 166 - colorSpec-1.6-0/colorSpec/R/options.R | 271 +- colorSpec-1.6-0/colorSpec/R/rbind.super.R | 4 colorSpec-1.6-0/colorSpec/R/reparam.R | 14 colorSpec-1.6-0/colorSpec/R/utils.R | 313 +-- colorSpec-1.6-0/colorSpec/R/zonogon.R | 28 colorSpec-1.6-0/colorSpec/R/zonogon3.R | 6 colorSpec-1.6-0/colorSpec/R/zonohedron.R | 66 colorSpec-1.6-0/colorSpec/build/vignette.rds |binary colorSpec-1.6-0/colorSpec/inst/doc/blueflame.pdf |binary colorSpec-1.6-0/colorSpec/inst/doc/colorSpec-guide.R | 2 colorSpec-1.6-0/colorSpec/inst/doc/colorSpec-guide.Rmd | 63 colorSpec-1.6-0/colorSpec/inst/doc/colorSpec-guide.html | 1128 ++++++++--- colorSpec-1.6-0/colorSpec/inst/doc/convexity.pdf |binary colorSpec-1.6-0/colorSpec/inst/doc/emulation.pdf |binary colorSpec-1.6-0/colorSpec/inst/doc/gallery.pdf |binary colorSpec-1.6-0/colorSpec/inst/doc/inversion.pdf |binary colorSpec-1.6-0/colorSpec/inst/doc/lens-aging.pdf |binary colorSpec-1.6-0/colorSpec/inst/doc/optimals.pdf |binary colorSpec-1.6-0/colorSpec/inst/doc/phenolred.R | 16 colorSpec-1.6-0/colorSpec/inst/doc/phenolred.html | 361 +-- colorSpec-1.6-0/colorSpec/inst/doc/photoncounting.R | 10 colorSpec-1.6-0/colorSpec/inst/doc/photoncounting.html | 266 +- colorSpec-1.6-0/colorSpec/inst/extdata/targets/A70.ti3 |only colorSpec-1.6-0/colorSpec/inst/extdata/targets/TCSforCRI.txt | 1 colorSpec-1.6-0/colorSpec/man/computeCCT.Rd | 3 colorSpec-1.6-0/colorSpec/man/computeCRI.Rd | 137 + colorSpec-1.6-0/colorSpec/man/logging.Rd | 32 colorSpec-1.6-0/colorSpec/man/options.Rd | 23 colorSpec-1.6-0/colorSpec/man/plot.Rd | 1 colorSpec-1.6-0/colorSpec/man/readCGATS.Rd | 2 colorSpec-1.6-0/colorSpec/tests/test-CGATS.R | 16 colorSpec-1.6-0/colorSpec/tests/test-read.R | 4 colorSpec-1.6-0/colorSpec/tests/test-sink.R | 9 colorSpec-1.6-0/colorSpec/vignettes/bibliography.bib | 11 colorSpec-1.6-0/colorSpec/vignettes/colorSpec-guide.Rmd | 63 67 files changed, 2679 insertions(+), 1827 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-03 0.9.9
2024-08-29 0.9.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-10 0.2.0
2017-02-23 0.1.3
2017-01-15 0.1.2
2014-07-29 0.1.1
2014-04-12 0.1