Title: Interactive Charts with the 'JavaScript' 'VChart' Library
Description: Provides an 'htmlwidgets' interface to 'VChart.js'.
'VChart', more than just a cross-platform charting library, but also an expressive data storyteller.
'VChart' examples and documentation are available here: <https://www.visactor.io/vchart>.
Author: Victor Perrier [aut, cre],
Fanny Meyer [aut]
Maintainer: Victor Perrier <victor.perrier@dreamrs.fr>
Diff between vchartr versions 0.1.3 dated 2024-10-31 and 0.1.4 dated 2025-01-15
DESCRIPTION | 6 LICENSE | 4 MD5 | 304 +-- NAMESPACE | 210 +- NEWS.md | 29 R/data.R | 408 ++-- R/events.R | 80 R/facets.R | 696 ++++---- R/format.R | 316 +-- R/layers.R | 3281 +++++++++++++++++++------------------- R/mark.R | 668 +++---- R/scales.R | 2092 ++++++++++++------------ R/select.R | 44 R/shiny.R | 60 R/specs.R | 974 +++++------ R/theme.R | 274 +-- R/utils.R | 708 ++++---- R/vchart-package.R | 18 R/vchart.R | 130 - R/vmap.R | 208 +- README.md | 264 +-- build/vignette.rds |binary inst/d3-format-locale/ar-001.json | 14 inst/d3-format-locale/ar-AE.json | 14 inst/d3-format-locale/ar-BH.json | 14 inst/d3-format-locale/ar-DJ.json | 14 inst/d3-format-locale/ar-DZ.json | 12 inst/d3-format-locale/ar-EG.json | 14 inst/d3-format-locale/ar-EH.json | 12 inst/d3-format-locale/ar-ER.json | 14 inst/d3-format-locale/ar-IL.json | 14 inst/d3-format-locale/ar-IQ.json | 14 inst/d3-format-locale/ar-JO.json | 14 inst/d3-format-locale/ar-KM.json | 14 inst/d3-format-locale/ar-KW.json | 14 inst/d3-format-locale/ar-LB.json | 14 inst/d3-format-locale/ar-LY.json | 12 inst/d3-format-locale/ar-MA.json | 12 inst/d3-format-locale/ar-MR.json | 14 inst/d3-format-locale/ar-OM.json | 14 inst/d3-format-locale/ar-PS.json | 14 inst/d3-format-locale/ar-QA.json | 14 inst/d3-format-locale/ar-SA.json | 14 inst/d3-format-locale/ar-SD.json | 14 inst/d3-format-locale/ar-SO.json | 14 inst/d3-format-locale/ar-SS.json | 14 inst/d3-format-locale/ar-SY.json | 14 inst/d3-format-locale/ar-TD.json | 14 inst/d3-format-locale/ar-TN.json | 12 inst/d3-format-locale/ar-YE.json | 14 inst/d3-format-locale/ca-ES.json | 12 inst/d3-format-locale/cs-CZ.json | 12 inst/d3-format-locale/da-DK.json | 12 inst/d3-format-locale/de-CH.json | 12 inst/d3-format-locale/de-DE.json | 12 inst/d3-format-locale/en-CA.json | 12 inst/d3-format-locale/en-GB.json | 12 inst/d3-format-locale/en-IE.json | 12 inst/d3-format-locale/en-IN.json | 12 inst/d3-format-locale/en-US.json | 12 inst/d3-format-locale/es-BO.json | 14 inst/d3-format-locale/es-ES.json | 12 inst/d3-format-locale/es-MX.json | 12 inst/d3-format-locale/fi-FI.json | 12 inst/d3-format-locale/fr-CA.json | 12 inst/d3-format-locale/fr-FR.json | 14 inst/d3-format-locale/he-IL.json | 12 inst/d3-format-locale/hu-HU.json | 12 inst/d3-format-locale/it-IT.json | 12 inst/d3-format-locale/ja-JP.json | 12 inst/d3-format-locale/ko-KR.json | 12 inst/d3-format-locale/mk-MK.json | 12 inst/d3-format-locale/nl-NL.json | 12 inst/d3-format-locale/pl-PL.json | 12 inst/d3-format-locale/pt-BR.json | 12 inst/d3-format-locale/pt-PT.json | 12 inst/d3-format-locale/ru-RU.json | 12 inst/d3-format-locale/sl-SI.json | 12 inst/d3-format-locale/sv-SE.json | 12 inst/d3-format-locale/uk-UA.json | 12 inst/d3-format-locale/zh-CN.json | 12 inst/doc/vchartr.R | 18 inst/doc/vchartr.Rmd | 206 +- inst/doc/vchartr.html | 870 +++++----- inst/examples/app-chart-types.R | 458 ++--- inst/htmlwidgets/vchart.js | 2 inst/htmlwidgets/vchart.yaml | 14 man/co2_emissions.Rd | 72 man/co2_world.Rd | 60 man/countries_gdp.Rd | 52 man/eco2mix.Rd | 62 man/eco2mix_long.Rd | 48 man/electricity_mix.Rd | 50 man/energy_sankey.Rd | 48 man/format-date.Rd | 128 - man/format_num_d3.Rd | 60 man/mark-area.Rd | 238 +- man/mark-line.Rd | 274 +-- man/meteo_paris.Rd | 58 man/scale-color-manual.Rd | 160 - man/scale-continuous.Rd | 278 +-- man/scale-date.Rd | 274 +-- man/scale-discrete.Rd | 64 man/scale-gradient.Rd | 128 - man/temperatures.Rd | 38 man/top_cran_downloads.Rd | 38 man/top_generation.Rd | 46 man/v_area.Rd | 251 +- man/v_bar.Rd | 152 - man/v_boxplot.Rd | 132 - man/v_circlepacking.Rd | 176 +- man/v_event.Rd | 86 man/v_facet_wrap.Rd | 142 - man/v_gauge.Rd | 168 - man/v_heatmap.Rd | 134 - man/v_hist.Rd | 202 +- man/v_jitter.Rd | 148 - man/v_labs.Rd | 68 man/v_line.Rd | 186 +- man/v_pie.Rd | 222 +- man/v_progress.Rd | 116 - man/v_radar.Rd | 158 - man/v_sankey.Rd | 168 - man/v_scale_size.Rd | 98 - man/v_scatter.Rd | 178 +- man/v_smooth.Rd | 186 +- man/v_specs.Rd | 76 man/v_specs_axes.Rd | 204 +- man/v_specs_colors.Rd | 58 man/v_specs_crosshair.Rd | 112 - man/v_specs_custom_mark.Rd | 112 - man/v_specs_datazoom.Rd | 94 - man/v_specs_indicator.Rd | 124 - man/v_specs_legend.Rd | 70 man/v_specs_player.Rd | 66 man/v_specs_tooltip.Rd | 64 man/v_sunburst.Rd | 204 +- man/v_theme.Rd | 318 +-- man/v_treemap.Rd | 126 - man/v_venn.Rd | 148 - man/v_waterfall.Rd | 138 - man/v_wordcloud.Rd | 134 - man/vchart-shiny.Rd | 260 +-- man/vchart.Rd | 208 +- man/vchartr-package.Rd | 44 man/vmap.Rd | 190 +- man/world_electricity.Rd | 70 vignettes/articles/bar.Rmd | 500 ++--- vignettes/articles/charts.Rmd | 540 +++--- vignettes/articles/line.Rmd | 552 +++--- vignettes/articles/pie.Rmd | 286 +-- vignettes/articles/scatter.Rmd | 208 +- vignettes/vchartr.Rmd | 206 +- 153 files changed, 11693 insertions(+), 11666 deletions(-)
Title: Imputation of Missing Data in Sequence Analysis
Description: Multiple imputation of missing data in a dataset using MICT or
MICT-timing methods. The core idea of the algorithms is to fill gaps of
missing data, which is the typical form of missing data in a longitudinal
setting, recursively from their edges. Prediction is based on either a
multinomial or random forest regression model. Covariates and
time-dependent covariates can be included in the model.
Author: Kevin Emery [aut, cre],
Anthony Guinchard [aut],
Andre Berchtold [aut],
Kamyar Taher [aut]
Maintainer: Kevin Emery <kevin.emery@unige.ch>
Diff between seqimpute versions 2.1.0 dated 2024-11-13 and 2.2.0 dated 2025-01-15
seqimpute-2.1.0/seqimpute/R/SI0_InitCheck.R |only seqimpute-2.1.0/seqimpute/R/SI1_ORDERCreation.R |only seqimpute-2.1.0/seqimpute/R/SI2_ComputeImputeOrder.R |only seqimpute-2.1.0/seqimpute/R/SI3_SpecificModelImputation.R |only seqimpute-2.1.0/seqimpute/R/SI4_InitialNAsImpute.R |only seqimpute-2.1.0/seqimpute/R/SI5_TerminalNasImpute.R |only seqimpute-2.1.0/seqimpute/R/SI6_SLGNAsImpute.R |only seqimpute-2.1.0/seqimpute/R/SICommon.R |only seqimpute-2.1.0/seqimpute/R/SIX_FinalConversion.R |only seqimpute-2.1.0/seqimpute/R/manipulation_seqimp.R |only seqimpute-2.1.0/seqimpute/R/missings_generation.R |only seqimpute-2.1.0/seqimpute/R/seqimpute_timing.R |only seqimpute-2.2.0/seqimpute/DESCRIPTION | 20 seqimpute-2.2.0/seqimpute/MD5 | 87 - seqimpute-2.2.0/seqimpute/NAMESPACE | 1 seqimpute-2.2.0/seqimpute/NEWS.md | 38 seqimpute-2.2.0/seqimpute/R/addcluster.R |only seqimpute-2.2.0/seqimpute/R/checks.R |only seqimpute-2.2.0/seqimpute/R/compute.order.R |only seqimpute-2.2.0/seqimpute/R/data.r | 20 seqimpute-2.2.0/seqimpute/R/final.transform.R |only seqimpute-2.2.0/seqimpute/R/fromseqimp.R |only seqimpute-2.2.0/seqimpute/R/methods.seqimp.R |only seqimpute-2.2.0/seqimpute/R/mict.initial.R |only seqimpute-2.2.0/seqimpute/R/mict.internal.R |only seqimpute-2.2.0/seqimpute/R/mict.leftSLG.R |only seqimpute-2.2.0/seqimpute/R/mict.rightSLG.R |only seqimpute-2.2.0/seqimpute/R/mict.terminal.R |only seqimpute-2.2.0/seqimpute/R/mict.timing.R |only seqimpute-2.2.0/seqimpute/R/plots.R | 307 +-- seqimpute-2.2.0/seqimpute/R/seqQuickLook.R | 231 +- seqimpute-2.2.0/seqimpute/R/seqTrans.R | 118 - seqimpute-2.2.0/seqimpute/R/seqaddNA.R |only seqimpute-2.2.0/seqimpute/R/seqcomplete.R |only seqimpute-2.2.0/seqimpute/R/seqimpute.R | 614 +++---- seqimpute-2.2.0/seqimpute/R/seqwithmiss.R |only seqimpute-2.2.0/seqimpute/inst/doc/vignette.pdf |binary seqimpute-2.2.0/seqimpute/man/addcluster.Rd | 10 seqimpute-2.2.0/seqimpute/man/fromseqimp.Rd | 127 - seqimpute-2.2.0/seqimpute/man/gameadd.Rd | 14 seqimpute-2.2.0/seqimpute/man/plot.seqimp.Rd | 6 seqimpute-2.2.0/seqimpute/man/print.seqimp.Rd | 2 seqimpute-2.2.0/seqimpute/man/seqQuickLook.Rd | 18 seqimpute-2.2.0/seqimpute/man/seqTrans.Rd | 8 seqimpute-2.2.0/seqimpute/man/seqaddNA.Rd | 173 +- seqimpute-2.2.0/seqimpute/man/seqcomplete.Rd | 10 seqimpute-2.2.0/seqimpute/man/seqimpute.Rd | 153 + seqimpute-2.2.0/seqimpute/man/seqmissIplot.Rd | 30 seqimpute-2.2.0/seqimpute/man/seqmissfplot.Rd | 43 seqimpute-2.2.0/seqimpute/man/seqmissimplic.Rd | 115 - seqimpute-2.2.0/seqimpute/man/seqwithmiss.Rd | 10 seqimpute-2.2.0/seqimpute/man/summary.seqimp.Rd | 2 seqimpute-2.2.0/seqimpute/tests/testthat/test-manipulation_seqimp.R | 116 - seqimpute-2.2.0/seqimpute/tests/testthat/test-missings_generation.R | 10 seqimpute-2.2.0/seqimpute/tests/testthat/test-plots.R | 42 seqimpute-2.2.0/seqimpute/tests/testthat/test-seqQuickLook.R | 76 seqimpute-2.2.0/seqimpute/tests/testthat/test-seqTrans.R | 41 seqimpute-2.2.0/seqimpute/tests/testthat/test-seqimpute.R | 824 ++++++---- 58 files changed, 1813 insertions(+), 1453 deletions(-)
Title: Interactive Networks, Timelines, Barplots, Galleries with
'D3.js'
Description: Creates interactive analytic graphs with 'R'. It joins the data analysis power of R and the visualization libraries of JavaScript in one package. The package provides interactive networks, timelines, barplots, image galleries and evolving networks. Graphs are represented as 'D3.js' graphs embedded in a web page ready for its interactive analysis and exploration.
Author: Modesto Escobar [aut, cph, cre]
,
Carlos Prieto [aut] ,
David Barrios [aut]
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between rD3plot versions 1.1.21 dated 2024-10-18 and 1.1.26 dated 2025-01-15
DESCRIPTION | 8 +- MD5 | 16 ++-- NAMESPACE | 2 R/methods.R | 2 R/multigraph.R | 182 ++++++++++++++++++++++++++++++++++++++++++++++--- inst/www/functions.js | 2 inst/www/gallery2.js | 8 +- inst/www/network.js | 50 +++++++++---- man/evolNetwork_rd3.Rd | 37 +++++++-- 9 files changed, 253 insertions(+), 54 deletions(-)
Title: Interactive Analytic Networks
Description: Create interactive analytic networks. It joins the data analysis power of R to obtain coincidences, co-occurrences and correlations, and the visualization libraries of 'JavaScript' in one package.
Author: Modesto Escobar [cre, aut, cph]
,
David Barrios [aut],
Carlos Prieto [aut] ,
Luis Martinez-Uribe [aut] ,
Pablo Cabrera-Alvarez [aut] ,
Cristina Calvo-Lopez [aut]
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between netCoin versions 2.0.84 dated 2024-10-18 and 2.1.0 dated 2025-01-15
DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- inst/doc/netCoin.html | 4 ++-- man/get_template2.Rd | 2 +- man/netExhibit.Rd | 2 +- 5 files changed, 12 insertions(+), 12 deletions(-)
Title: Perform Factorial Analysis from 'FactoMineR' with a Shiny
Application
Description: Perform factorial analysis with a menu and draw graphs interactively thanks to 'FactoMineR' and a Shiny application.
Author: Pauline Vaissie [aut],
Astrid Monge [aut],
Francois Husson [aut, cre]
Maintainer: Francois Husson <francois.husson@institut-agro.fr>
Diff between Factoshiny versions 2.6 dated 2024-04-20 and 2.7 dated 2025-01-15
DESCRIPTION | 14 ++++++++--- MD5 | 57 +++++++++++++++++++++++----------------------- R/CAshiny.R | 8 +++--- R/FAMDshiny.R | 8 +++--- R/Factoshiny.R | 54 +++++++++++++++++++++---------------------- R/HCPCshiny.R | 6 ++-- R/MCAshiny.R | 9 +++---- R/MFAshiny.R | 8 +++--- R/PCAshiny.R | 6 ++-- R/catdesshiny.R | 6 ++-- R/condesshiny.R | 8 +++--- inst/FactoCAapp2/ui.R | 4 +-- inst/FactoFAMDapp2/ui.R | 2 - inst/FactoMCAapp2/ui.R | 2 - inst/FactoMFAapp/ui.R | 2 - inst/FactoPCAapp2/ui.R | 2 - man/CAshiny.Rd | 7 +++-- man/FAMDshiny.Rd | 4 +-- man/Factoshiny-package.Rd | 3 -- man/Factoshiny.Rd |only man/HCPCshiny.Rd | 7 +++-- man/MCAshiny.Rd | 7 +++-- man/MFAshiny.Rd | 7 +++-- man/PCAshiny.Rd | 7 +++-- man/print.CAshiny.Rd | 2 - man/print.FAMDshiny.Rd | 2 - man/print.HCPCshiny.Rd | 2 - man/print.MCAshiny.Rd | 2 - man/print.MFAshiny.Rd | 2 - man/print.PCAshiny.Rd | 2 - 30 files changed, 130 insertions(+), 120 deletions(-)
Title: Dynamic and Interactive Maps
Description: Dynamic and Interactive Maps with R, powered by 'leaflet' <https://leafletjs.com>. 'evolMap' generates a web page with interactive and dynamic maps to which you can add geometric entities (points, lines or colored geographic areas), and/or markers with optional links between them. The dynamic ability of these maps allows their components to evolve over a continuous period of time or by periods.
Author: Modesto Escobar [cre, aut, cph]
,
Carlos Prieto [aut] ,
David Barrios [aut]
Maintainer: Modesto Escobar <modesto@usal.es>
Diff between evolMap versions 1.2.33 dated 2023-03-17 and 1.3.8 dated 2025-01-15
evolMap-1.2.33/evolMap/inst/www/tutorial.css |only evolMap-1.3.8/evolMap/DESCRIPTION | 8 evolMap-1.3.8/evolMap/MD5 | 43 - evolMap-1.3.8/evolMap/R/create_map.R | 106 ++ evolMap-1.3.8/evolMap/R/providers.R | 334 ++++---- evolMap-1.3.8/evolMap/README.md | 2 evolMap-1.3.8/evolMap/inst/www/ca.js | 1 evolMap-1.3.8/evolMap/inst/www/create_map.js | 757 +++++++++++++++----- evolMap-1.3.8/evolMap/inst/www/create_map2.js |only evolMap-1.3.8/evolMap/inst/www/d3.min.js | 4 evolMap-1.3.8/evolMap/inst/www/en.js | 1 evolMap-1.3.8/evolMap/inst/www/es.js | 1 evolMap-1.3.8/evolMap/inst/www/leaflet-providers.js | 432 +++++++---- evolMap-1.3.8/evolMap/inst/www/styles.css | 207 +++++ evolMap-1.3.8/evolMap/inst/www/styles2.css |only evolMap-1.3.8/evolMap/inst/www/tutorial.js | 142 ++- evolMap-1.3.8/evolMap/inst/www/tutorial_ca.js | 3 evolMap-1.3.8/evolMap/inst/www/tutorial_en.js | 8 evolMap-1.3.8/evolMap/inst/www/tutorial_es.js | 8 evolMap-1.3.8/evolMap/man/add_entities.Rd | 3 evolMap-1.3.8/evolMap/man/add_links.Rd | 5 evolMap-1.3.8/evolMap/man/add_markers.Rd | 14 evolMap-1.3.8/evolMap/man/add_periods.Rd | 3 evolMap-1.3.8/evolMap/man/create_map.Rd | 15 24 files changed, 1522 insertions(+), 575 deletions(-)
Title: Generating Funky Heatmaps for Data Frames
Description: Allows generating heatmap-like visualisations for data
frames. Funky heatmaps can be fine-tuned by providing annotations of the
columns and rows, which allows assigning multiple palettes or geometries
or grouping rows and columns together in categories.
Saelens et al. (2019) <doi:10.1038/s41587-019-0071-9>.
Author: Robrecht Cannoodt [aut, cre] ,
Wouter Saelens [aut] ,
Louise Deconinck [ctb] ,
Artuur Couckuyt [ctb] ,
Nick Markov [ctb] ,
Luke Zappia [ctb]
Maintainer: Robrecht Cannoodt <rcannood@gmail.com>
Diff between funkyheatmap versions 0.5.0 dated 2023-09-23 and 0.5.1 dated 2025-01-15
funkyheatmap-0.5.0/funkyheatmap/man/figures/README-heatmap1-1.png |only funkyheatmap-0.5.1/funkyheatmap/DESCRIPTION | 48 funkyheatmap-0.5.1/funkyheatmap/MD5 | 90 funkyheatmap-0.5.1/funkyheatmap/NEWS.md | 6 funkyheatmap-0.5.1/funkyheatmap/R/calculate_geom_positions.R | 36 funkyheatmap-0.5.1/funkyheatmap/R/compose_ggplot.R | 29 funkyheatmap-0.5.1/funkyheatmap/R/compute_bounds.R | 2 funkyheatmap-0.5.1/funkyheatmap/R/create_legends.R | 281 +- funkyheatmap-0.5.1/funkyheatmap/R/dynbenchmark_data.R | 3 funkyheatmap-0.5.1/funkyheatmap/R/funky_heatmap.R | 46 funkyheatmap-0.5.1/funkyheatmap/R/funkyheatmap-package.R | 20 funkyheatmap-0.5.1/funkyheatmap/R/geom_rounded_rect.R | 1 funkyheatmap-0.5.1/funkyheatmap/R/if_list_to_tibble.R |only funkyheatmap-0.5.1/funkyheatmap/R/is_color.R | 2 funkyheatmap-0.5.1/funkyheatmap/R/make_geom_data_processor.R | 11 funkyheatmap-0.5.1/funkyheatmap/R/position_arguments.R | 27 funkyheatmap-0.5.1/funkyheatmap/R/scib_data.R | 3 funkyheatmap-0.5.1/funkyheatmap/R/verify_column_groups.R | 2 funkyheatmap-0.5.1/funkyheatmap/R/verify_column_info.R | 7 funkyheatmap-0.5.1/funkyheatmap/R/verify_data.R | 2 funkyheatmap-0.5.1/funkyheatmap/R/verify_legends.R | 34 funkyheatmap-0.5.1/funkyheatmap/R/verify_palettes.R | 2 funkyheatmap-0.5.1/funkyheatmap/R/verify_row_groups.R | 2 funkyheatmap-0.5.1/funkyheatmap/R/verify_row_info.R | 4 funkyheatmap-0.5.1/funkyheatmap/README.md | 77 funkyheatmap-0.5.1/funkyheatmap/build/partial.rdb |binary funkyheatmap-0.5.1/funkyheatmap/build/vignette.rds |binary funkyheatmap-0.5.1/funkyheatmap/inst/CITATION | 25 funkyheatmap-0.5.1/funkyheatmap/inst/doc/mtcars.R | 21 funkyheatmap-0.5.1/funkyheatmap/inst/doc/mtcars.Rmd | 42 funkyheatmap-0.5.1/funkyheatmap/inst/doc/mtcars.html | 632 +++-- funkyheatmap-0.5.1/funkyheatmap/inst/doc/scIB.R | 80 funkyheatmap-0.5.1/funkyheatmap/inst/doc/scIB.Rmd | 81 funkyheatmap-0.5.1/funkyheatmap/inst/doc/scIB.html | 1117 ++++++---- funkyheatmap-0.5.1/funkyheatmap/man/dynbenchmark_data.Rd | 2 funkyheatmap-0.5.1/funkyheatmap/man/figures/README-heatmap2-1.png |binary funkyheatmap-0.5.1/funkyheatmap/man/funky_heatmap.Rd | 2 funkyheatmap-0.5.1/funkyheatmap/man/funkyheatmap-package.Rd | 19 funkyheatmap-0.5.1/funkyheatmap/man/geom_rounded_rect.Rd | 90 funkyheatmap-0.5.1/funkyheatmap/man/scib_summary.Rd | 2 funkyheatmap-0.5.1/funkyheatmap/tests/testthat/test-minimal_example.R |only funkyheatmap-0.5.1/funkyheatmap/tests/testthat/test_data |only funkyheatmap-0.5.1/funkyheatmap/vignettes/mtcars.Rmd | 42 funkyheatmap-0.5.1/funkyheatmap/vignettes/scIB.Rmd | 81 44 files changed, 1920 insertions(+), 1051 deletions(-)
Title: Optimally Robust Estimation for Extreme Value Distributions
Description: Optimally robust estimation for extreme value distributions using S4 classes and
methods (based on packages 'distr', 'distrEx', 'distrMod', 'RobAStBase', and
'ROptEst'); the underlying theoretic results can be found in Ruckdeschel and
Horbenko, (2013 and 2012), \doi{10.1080/02331888.2011.628022} and
\doi{10.1007/s00184-011-0366-4}.
Author: Nataliya Horbenko [aut, cph],
Bernhard Spangl [ctb] ,
Sascha Desmettre [ctb] ,
Eugen Massini [ctb] ,
Daria Pupashenko [ctb] ,
Gerald Kroisandt [ctb] ,
Matthias Kohl [aut, cph] ,
Peter Ruckdeschel [cre, aut, cph]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between RobExtremes versions 1.3.1 dated 2024-09-04 and 1.3.2 dated 2025-01-15
RobExtremes-1.3.1/RobExtremes/tests |only RobExtremes-1.3.2/RobExtremes/DESCRIPTION | 18 +++++++------- RobExtremes-1.3.2/RobExtremes/MD5 | 8 ++---- RobExtremes-1.3.2/RobExtremes/inst/NEWS | 7 +++++ RobExtremes-1.3.2/RobExtremes/man/0RobExtremes-package.Rd | 8 +++--- 5 files changed, 23 insertions(+), 18 deletions(-)
Title: Interpolation Grids for Packages of the 'RobASt' - Family of
Packages
Description: Includes 'sysdata.rda' file for packages of the 'RobASt' - family of packages; is
currently used by package 'RobExtremes' only.
Author: Matthias Kohl [aut, cph],
Bernhard Spangl [ctb] ,
Sascha Desmettre [ctb] ,
Eugen Massini [ctb] ,
Mykhailo Pupashenko [ctb] ,
Daria Pupashenko [ctb] ,
Gerald Kroisandt [ctb] ,
Peter Ruckdeschel [cre, cph, aut]
Maintainer: Peter Ruckdeschel <peter.ruckdeschel@uni-oldenburg.de>
Diff between RobAStRDA versions 1.2.1 dated 2024-01-29 and 1.2.2 dated 2025-01-15
DESCRIPTION | 16 ++++++++-------- MD5 | 10 +++++----- R/sysdata.rda |binary inst/CITATION | 4 ++-- inst/NEWS | 16 ++++++++++++++++ man/0RobRDA-package.Rd | 13 ++++--------- 6 files changed, 35 insertions(+), 24 deletions(-)
Title: Assessment of Regression Models Performance
Description: Utilities for computing measures to assess model quality,
which are not directly provided by R's 'base' or 'stats' packages.
These include e.g. measures like r-squared, intraclass correlation
coefficient (Nakagawa, Johnson & Schielzeth (2017)
<doi:10.1098/rsif.2017.0213>), root mean squared error or functions to
check models for overdispersion, singularity or zero-inflation and
more. Functions apply to a large variety of regression models,
including generalized linear models, mixed effects models and Bayesian
models. References: Lüdecke et al. (2021) <doi:10.21105/joss.03139>.
Author: Daniel Luedecke [aut, cre] ,
Dominique Makowski [aut, ctb] ,
Mattan S. Ben-Shachar [aut, ctb]
,
Indrajeet Patil [aut, ctb] ,
Philip Waggoner [aut, ctb] ,
Brenton M. Wiernik [aut, ctb] ,
Remi Theriault [aut, ctb] ,
Vincent Arel-Bundock [ctb] ,
Martin J [...truncated...]
Maintainer: Daniel Luedecke <d.luedecke@uke.de>
Diff between performance versions 0.12.4 dated 2024-10-18 and 0.13.0 dated 2025-01-15
DESCRIPTION | 28 ++-- MD5 | 173 +++++++++++++-------------- NAMESPACE | 7 - NEWS.md | 34 +++++ R/binned_residuals.R | 5 R/check_autocorrelation.R | 2 R/check_clusterstructure.R | 3 R/check_collinearity.R | 52 ++++---- R/check_concurvity.R | 1 R/check_convergence.R | 5 R/check_dag.R | 2 R/check_distribution.R | 9 - R/check_factorstructure.R | 7 - R/check_heterogeneity_bias.R | 11 - R/check_heteroscedasticity.R | 9 - R/check_homogeneity.R | 10 - R/check_htest.R | 1 R/check_itemscale.R | 4 R/check_model.R | 122 +++++++++---------- R/check_model_diagnostics.R | 33 +---- R/check_multimodal.R | 1 R/check_normality.R | 7 - R/check_outliers.R | 155 +++++++++--------------- R/check_overdispersion.R | 5 R/check_predictions.R | 38 ++--- R/check_singularity.R | 6 R/check_sphericity.R | 3 R/compare_performance.R | 2 R/cronbachs_alpha.R | 3 R/icc.R | 3 R/item_difficulty.R | 1 R/looic.R | 1 R/model_performance.R | 1 R/model_performance.bayesian.R | 1 R/model_performance.lavaan.R | 1 R/model_performance.lm.R | 5 R/model_performance.mixed.R | 1 R/model_performance_default.R | 1 R/performance_accuracy.R | 1 R/performance_aicc.R | 77 ++---------- R/performance_hosmer.R | 1 R/performance_logloss.R | 1 R/performance_mae.R | 3 R/performance_mse.R | 3 R/performance_pcp.R | 2 R/performance_roc.R | 39 ++++-- R/performance_score.R | 3 R/print-methods.R | 5 R/r2.R | 47 ++----- R/r2_bayes.R | 3 R/r2_coxsnell.R | 18 +- R/r2_loo.R | 1 R/r2_mcfadden.R | 24 +-- R/r2_nagelkerke.R | 9 - R/r2_nakagawa.R | 2 R/simulate_residuals.R | 7 - R/test_bf.R | 2 R/test_likelihoodratio.R | 2 R/test_performance.R | 7 - R/test_vuong.R | 10 - R/test_wald.R | 1 build/partial.rdb |binary man/binned_residuals.Rd | 7 - man/check_collinearity.Rd | 18 ++ man/check_dag.Rd | 2 man/check_distribution.Rd | 4 man/check_heterogeneity_bias.Rd | 10 - man/check_heteroscedasticity.Rd | 8 - man/check_homogeneity.Rd | 8 - man/check_model.Rd | 22 ++- man/check_normality.Rd | 2 man/check_outliers.Rd | 6 man/check_predictions.Rd | 14 +- man/performance-package.Rd | 12 - man/performance_aicc.Rd | 10 + man/performance_roc.Rd | 19 ++ tests/testthat/_snaps/compare_performance.md |only tests/testthat/_snaps/pkg-ivreg.md | 10 + tests/testthat/test-check_collinearity.R | 23 +++ tests/testthat/test-check_model.R | 4 tests/testthat/test-check_outliers.R | 17 ++ tests/testthat/test-check_overdispersion.R | 2 tests/testthat/test-check_residuals.R | 8 - tests/testthat/test-check_zeroinflation.R | 22 +-- tests/testthat/test-compare_performance.R | 7 + tests/testthat/test-performance_roc.R | 23 +++ tests/testthat/test-pkg-fixest.R | 1 tests/testthat/test-r2_mcfadden.R | 42 ++++++ 88 files changed, 645 insertions(+), 677 deletions(-)
Title: Reading and Writing Open Data Format Files
Description: The Open Data Format (ODF) is a new, non-proprietary, multilingual, metadata enriched, and zip-compressed data format with metadata structured in the Data Documentation Initiative (DDI) Codebook standard. This package allows reading and writing of data files in the Open Data Format (ODF) in R, and displaying metadata in different languages. For further information on the Open Data Format, see <https://opendataformat.github.io/>.
Author: Tom Hartl [aut, cre] ,
Claudia Saalbach [ctb]
Maintainer: Tom Hartl <thartl@diw.de>
Diff between opendataformat versions 2.1.1 dated 2024-12-04 and 2.1.2 dated 2025-01-15
opendataformat-2.1.1/opendataformat/data/data_odf.rda |only opendataformat-2.1.1/opendataformat/man/merge.odf.Rd |only opendataformat-2.1.1/opendataformat/vignettes/opendataformat-tom-D15S-2.html |only opendataformat-2.1.1/opendataformat/vignettes/opendataformat-tom-D15S.html |only opendataformat-2.1.2/opendataformat/DESCRIPTION | 10 opendataformat-2.1.2/opendataformat/MD5 | 43 opendataformat-2.1.2/opendataformat/NAMESPACE | 3 opendataformat-2.1.2/opendataformat/R/as_odf_tbl.R |only opendataformat-2.1.2/opendataformat/R/docu_odf.R | 22 opendataformat-2.1.2/opendataformat/R/merge.R | 37 opendataformat-2.1.2/opendataformat/R/opendataformat-package.R | 9 opendataformat-2.1.2/opendataformat/R/read_odf.R | 29 opendataformat-2.1.2/opendataformat/data/data_odf.RData |only opendataformat-2.1.2/opendataformat/inst/doc/opendataformat.R | 29 opendataformat-2.1.2/opendataformat/inst/doc/opendataformat.Rmd | 40 opendataformat-2.1.2/opendataformat/inst/doc/opendataformat.html | 449 +++++----- opendataformat-2.1.2/opendataformat/man/as_odf_tbl.Rd |only opendataformat-2.1.2/opendataformat/man/merge.odf_tbl.Rd |only opendataformat-2.1.2/opendataformat/man/opendataformat-package.Rd | 13 opendataformat-2.1.2/opendataformat/man/read_odf.Rd | 17 opendataformat-2.1.2/opendataformat/tests/testthat/test-as_odf_tbl.R |only opendataformat-2.1.2/opendataformat/tests/testthat/test-docu_odf.R | 4 opendataformat-2.1.2/opendataformat/tests/testthat/test-read_odf.R | 20 opendataformat-2.1.2/opendataformat/tests/testthat/testdata/data_odf.RData |binary opendataformat-2.1.2/opendataformat/tests/testthat/testdata/data_odf_with_default.RData |binary opendataformat-2.1.2/opendataformat/tests/testthat/testdata/data_odf_with_missings.RData |binary opendataformat-2.1.2/opendataformat/vignettes/opendataformat.Rmd | 40 27 files changed, 485 insertions(+), 280 deletions(-)
More information about opendataformat at CRAN
Permanent link
Title: Nicely Formatted Contingency Tables and Frequency Tables
Description: Nicely formatted frequency tables and contingency tables (1-way, 2-way, 3-way and 4-way tables), that can easily be exported to HTML or 'Office' documents. Designed to work with pipes.
Author: Mans Thulin [aut, cre],
Kajsa Grind [aut],
Stefan Furne [aut]
Maintainer: Mans Thulin <mans@statistikkonsult.com>
Diff between ivo.table versions 0.5 dated 2024-08-28 and 0.6 dated 2025-01-15
DESCRIPTION | 10 ++++-- MD5 | 19 ++++++++----- NEWS.md | 3 ++ R/ivo_tables.R | 65 ++++++++++++++++++++++++--------------------- build |only inst/doc |only man/ivo_flextable_theme.Rd | 5 ++- man/ivo_table.Rd | 4 ++ man/ivo_table_add_mask.Rd | 2 - man/ivo_table_masked.Rd | 3 ++ vignettes |only 11 files changed, 68 insertions(+), 43 deletions(-)
Title: Tidy and Geospatial Kernel Smoothing
Description: Extensions of the kernel smoothing functions from the 'ks' package for compatibility with the tidyverse and geospatial ecosystems <doi:10.1007/s00180-024-01543-9>.
Author: Tarn Duong [aut, cre]
Maintainer: Tarn Duong <tarn.duong@gmail.com>
Diff between eks versions 1.0.6 dated 2024-11-29 and 1.0.7 dated 2025-01-15
CHANGELOG | 4 ++++ DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NAMESPACE | 2 +- R/sf-ks-prelim.R | 27 +++++++++++++++++---------- R/sf-ks.R | 2 ++ R/tidy-ks-prelim.R | 5 +++-- R/tidy-ks.R | 1 + inst/doc/tidysf_kde.html | 4 ++-- 9 files changed, 42 insertions(+), 27 deletions(-)
Title: Utility Functions and Development Tools for the Admiral Package
Family
Description: Utility functions to check data, variables and conditions for
functions used in 'admiral' and 'admiral' extension packages.
Additional utility helper functions to assist developers with
maintaining documentation, testing and general upkeep of 'admiral' and
'admiral' extension packages.
Author: Ben Straub [aut, cre],
Stefan Bundfuss [aut] ,
Jeffrey Dickinson [aut],
Ross Farrugia [aut],
Fanny Gautier [aut],
Edoardo Mancini [aut] ,
Sadchla Mascary [aut],
Gordon Miller [aut],
Daniel Sjoberg [aut] ,
Stefan Thoma [aut] ,
Kangjie Zhang [aut],
Zel [...truncated...]
Maintainer: Ben Straub <ben.x.straub@gsk.com>
Diff between admiraldev versions 1.1.0 dated 2024-06-06 and 1.2.0 dated 2025-01-15
admiraldev-1.1.0/admiraldev/man/assert_function_param.Rd |only admiraldev-1.1.0/admiraldev/man/assert_has_variables.Rd |only admiraldev-1.1.0/admiraldev/man/assert_named_exprs.Rd |only admiraldev-1.2.0/admiraldev/DESCRIPTION | 51 - admiraldev-1.2.0/admiraldev/MD5 | 53 - admiraldev-1.2.0/admiraldev/NAMESPACE | 6 admiraldev-1.2.0/admiraldev/NEWS.md | 49 admiraldev-1.2.0/admiraldev/R/admiraldev-package.R | 4 admiraldev-1.2.0/admiraldev/R/assertions.R | 213 ++-- admiraldev-1.2.0/admiraldev/R/dev_utilities.R | 14 admiraldev-1.2.0/admiraldev/R/get.R | 12 admiraldev-1.2.0/admiraldev/R/lifecycle_admiral.R |only admiraldev-1.2.0/admiraldev/R/quo.R | 12 admiraldev-1.2.0/admiraldev/README.md | 4 admiraldev-1.2.0/admiraldev/inst/WORDLIST | 20 admiraldev-1.2.0/admiraldev/inst/doc/package_extensions.html | 2 admiraldev-1.2.0/admiraldev/inst/doc/rcmd_issues.Rmd | 6 admiraldev-1.2.0/admiraldev/inst/doc/rcmd_issues.html | 8 admiraldev-1.2.0/admiraldev/man/admiraldev-package.Rd | 15 admiraldev-1.2.0/admiraldev/man/assert_list_element.Rd | 41 admiraldev-1.2.0/admiraldev/man/assert_numeric_vector.Rd | 11 admiraldev-1.2.0/admiraldev/man/assert_unit.Rd | 44 admiraldev-1.2.0/admiraldev/man/deprecate_inform.Rd |only admiraldev-1.2.0/admiraldev/man/get_source_vars.Rd | 4 admiraldev-1.2.0/admiraldev/man/replace_values_by_names.Rd | 4 admiraldev-1.2.0/admiraldev/man/vars2chr.Rd | 6 admiraldev-1.2.0/admiraldev/tests/testthat/_snaps/assertions.md | 114 +- admiraldev-1.2.0/admiraldev/tests/testthat/_snaps/lifecycle_admiral.md |only admiraldev-1.2.0/admiraldev/tests/testthat/test-assertions.R | 510 ++++------ admiraldev-1.2.0/admiraldev/tests/testthat/test-lifecycle_admiral.R |only admiraldev-1.2.0/admiraldev/vignettes/rcmd_issues.Rmd | 6 31 files changed, 673 insertions(+), 536 deletions(-)
Title: 'Rcpp' Bindings for the 'fast_float' Header-Only Library for
Number Parsing
Description: Converting ascii text into (floating-point) numeric values is a
very common problem. The 'fast_float' header-only C++ library by Daniel Lemire
does it very well and very fast at up to or over to 1 gigabyte per second as
described in more detail in <doi:10.1002/spe.2984>. 'fast_float' is
licensed under the Apache 2.0 license and provided here for use by other R
packages via a simple 'LinkingTo:' statement.
Author: Dirk Eddelbuettel [aut, cre] ,
Brendan Knapp [aut] ,
Daniel Lemire [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppFastFloat versions 0.0.4 dated 2023-01-20 and 0.0.5 dated 2025-01-15
RcppFastFloat-0.0.4/RcppFastFloat/inst/include/fast_float/simple_decimal_conversion.h |only RcppFastFloat-0.0.5/RcppFastFloat/ChangeLog | 28 RcppFastFloat-0.0.5/RcppFastFloat/DESCRIPTION | 26 RcppFastFloat-0.0.5/RcppFastFloat/MD5 | 28 RcppFastFloat-0.0.5/RcppFastFloat/README.md | 2 RcppFastFloat-0.0.5/RcppFastFloat/inst/NEWS.Rd | 9 RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/ascii_number.h | 522 +++ RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/bigint.h | 264 + RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/constexpr_feature_detect.h |only RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/decimal_to_binary.h | 141 - RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/digit_comparison.h | 206 - RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/fast_float.h | 86 RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/fast_table.h | 1327 +++++----- RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/float_common.h | 867 +++++- RcppFastFloat-0.0.5/RcppFastFloat/inst/include/fast_float/parse_number.h | 395 ++ RcppFastFloat-0.0.5/RcppFastFloat/src/Makevars | 4 16 files changed, 2542 insertions(+), 1363 deletions(-)
Title: Fast and Efficient Processing of PAM Data
Description: Processing Chlorophyll Fluorescence & P700 Absorbance data generated by WALZ hardware. Four models are provided for the regression of Pi curves, which can be compared with each other in order to select the most suitable model for the data set. Control plots ensure the successful verification of each regression. Bundled output of alpha, ETRmax, Ik etc. enables fast and reliable further processing of the data.
Author: Julien Boehm [cre, aut] ,
Philipp Schrag [aut]
Maintainer: Julien Boehm <julien.boehm@uni-rostock.de>
Diff between pam versions 1.0.0 dated 2025-01-14 and 1.0.1 dated 2025-01-15
DESCRIPTION | 6 - MD5 | 29 +++--- build/partial.rdb |binary inst/CITATION |only tests/testthat/Rplots.pdf |binary tests/testthat/test-compare_regression_models_etr_I.R | 27 ++++-- tests/testthat/test-compare_regression_models_etr_II.R | 28 ++++-- tests/testthat/test-compare_regression_models_total.R | 71 +++++++++++----- tests/testthat/test-eilers_peeters_etr_I.R | 72 ++++++++++------- tests/testthat/test-eilers_peeters_etr_II.R | 70 ++++++++++------ tests/testthat/test-platt_etr_I.R | 70 ++++++++++------ tests/testthat/test-platt_etr_II.R | 70 ++++++++++------ tests/testthat/test-vollenweider_etr_I.R | 69 +++++++++------- tests/testthat/test-vollenweider_etr_II.R | 70 ++++++++++------ tests/testthat/test-walsby_etr_I.R | 60 ++++++++------ tests/testthat/test-walsby_etr_II.R | 60 ++++++++------ 16 files changed, 434 insertions(+), 268 deletions(-)
Title: Analysis of MHC Data in Non-Model Species
Description: Fifteen tools for bioinformatics processing and analysis of major
histocompatibility complex (MHC) data. The functions are tailored for amplicon data
sets that have been filtered using the dada2 method (for more information on
dada2, visit <https://benjjneb.github.io/dada2/> ), but even other types of data
sets can be analyzed.
The ReplMatch() function matches replicates in data sets in order to evaluate
genotyping success.
The GetReplTable() and GetReplStats() functions perform such an evaluation.
The CreateFas() function creates a fasta file with all the sequences in the data
set.
The CreateSamplesFas() function creates individual fasta files for each sample in
the data set.
The DistCalc() function calculates Grantham, Sandberg, or p-distances from pairwise
comparisons of all sequences in a data set, and mean distances of all pairwise
comparisons within each sample in a data set. The function additionally outputs five
tables with physico-chemical z-descriptor values (based on S [...truncated...]
Author: Jacob Roved [aut, cre]
Maintainer: Jacob Roved <jacob.roved@biol.lu.se>
Diff between MHCtools versions 1.5.3 dated 2023-07-08 and 1.5.4 dated 2025-01-15
MHCtools-1.5.3/MHCtools/R/BootKmeans_func_20210910.R |only MHCtools-1.5.3/MHCtools/R/ClusterMatch_func_20210910.R |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_10_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_1_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_2_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_3_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_4_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_5_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_6_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_7_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_8_20210913.RData |only MHCtools-1.5.3/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_9_20210913.RData |only MHCtools-1.5.4/MHCtools/DESCRIPTION | 10 - MHCtools-1.5.4/MHCtools/LICENSE | 2 MHCtools-1.5.4/MHCtools/MD5 | 92 +++++----- MHCtools-1.5.4/MHCtools/NEWS.md | 13 + MHCtools-1.5.4/MHCtools/R/BootKmeans_func_20250108.R |only MHCtools-1.5.4/MHCtools/R/ClusterMatch_func_20250108.R |only MHCtools-1.5.4/MHCtools/R/CreateFas_func_20230321.R | 9 MHCtools-1.5.4/MHCtools/R/CreateHpltOccTable_func_20221010.R | 9 MHCtools-1.5.4/MHCtools/R/CreateSamplesFas_func_20230321.R | 9 MHCtools-1.5.4/MHCtools/R/DistCalc_func_20230707.R | 20 -- MHCtools-1.5.4/MHCtools/R/GetHpltStats_func_20200915.R | 9 MHCtools-1.5.4/MHCtools/R/GetHpltTable_func_20200915.R | 9 MHCtools-1.5.4/MHCtools/R/GetReplStats_func_20200914.R | 9 MHCtools-1.5.4/MHCtools/R/GetReplTable_func_20200914.R | 9 MHCtools-1.5.4/MHCtools/R/HpltFind_func_20230321.R | 9 MHCtools-1.5.4/MHCtools/R/HpltMatch_func_20230322.R | 9 MHCtools-1.5.4/MHCtools/R/NestTablesXL_func_20221012.R | 9 MHCtools-1.5.4/MHCtools/R/PapaDiv_func_20230630.R | 9 MHCtools-1.5.4/MHCtools/R/ReplMatch_func_20230321.R | 11 - MHCtools-1.5.4/MHCtools/R/zzz.R | 4 MHCtools-1.5.4/MHCtools/README.md | 12 - MHCtools-1.5.4/MHCtools/data/k_summary_table.rda |binary MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_10_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_1_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_2_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_3_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_4_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_5_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_6_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_7_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_8_20250115.RData |only MHCtools-1.5.4/MHCtools/inst/extdata/ClusterMatch/Kclusters_model_9_20250115.RData |only MHCtools-1.5.4/MHCtools/man/BootKmeans.Rd | 22 +- MHCtools-1.5.4/MHCtools/man/ClusterMatch.Rd | 13 - MHCtools-1.5.4/MHCtools/man/CreateFas.Rd | 9 MHCtools-1.5.4/MHCtools/man/CreateHpltOccTable.Rd | 9 MHCtools-1.5.4/MHCtools/man/CreateSamplesFas.Rd | 9 MHCtools-1.5.4/MHCtools/man/DistCalc.Rd | 20 -- MHCtools-1.5.4/MHCtools/man/GetHpltStats.Rd | 9 MHCtools-1.5.4/MHCtools/man/GetHpltTable.Rd | 9 MHCtools-1.5.4/MHCtools/man/GetReplStats.Rd | 9 MHCtools-1.5.4/MHCtools/man/GetReplTable.Rd | 9 MHCtools-1.5.4/MHCtools/man/HpltFind.Rd | 9 MHCtools-1.5.4/MHCtools/man/HpltMatch.Rd | 9 MHCtools-1.5.4/MHCtools/man/NestTablesXL.Rd | 9 MHCtools-1.5.4/MHCtools/man/PapaDiv.Rd | 9 MHCtools-1.5.4/MHCtools/man/ReplMatch.Rd | 9 59 files changed, 206 insertions(+), 220 deletions(-)
Title: Stationary Vine Copula Models
Description: Provides functionality to fit and simulate from stationary vine
copula models for time series, see Nagler et al. (2022)
<doi:10.1016/j.jeconom.2021.11.015>.
Author: Thomas Nagler [aut, cre]
Maintainer: Thomas Nagler <mail@tnagler.com>
Diff between svines versions 0.2.3 dated 2024-01-18 and 0.2.4 dated 2025-01-15
DESCRIPTION | 8 +- MD5 | 34 ++++----- NEWS.md | 6 - R/RcppExports.R | 4 - R/svine.R | 6 - R/svinecop.R | 8 +- README.md | 53 +++++++------- build/partial.rdb |binary inst/include/svines/implementation/svine_selector.ipp | 13 +++ man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-5-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/svine.Rd | 4 - man/svine_dist.Rd | 2 man/svinecop.Rd | 2 man/svinecop_dist.Rd | 2 src/RcppExports.cpp | 16 ++-- src/wrappers_svine.cpp | 66 ++++++++---------- 18 files changed, 113 insertions(+), 111 deletions(-)
Title: Optimally Robust Estimation
Description: R infrastructure for optimally robust estimation in general smoothly
parameterized models using S4 classes and methods as described Kohl, M.,
Ruckdeschel, P., and Rieder, H. (2010), <doi:10.1007/s10260-010-0133-0>, and in
Rieder, H., Kohl, M., and Ruckdeschel, P. (2008), <doi:10.1007/s10260-007-0047-7>.
Author: Matthias Kohl [cre, cph] ,
Mykhailo Pupashenko [ctb] ,
Gerald Kroisandt [ctb] ,
Peter Ruckdeschel [aut, cph]
Maintainer: Matthias Kohl <Matthias.Kohl@stamats.de>
Diff between ROptEst versions 1.3.4 dated 2024-09-02 and 1.3.5 dated 2025-01-15
DESCRIPTION | 18 +++++++++--------- MD5 | 8 ++++---- build/partial.rdb |binary inst/NEWS | 7 +++++++ man/0ROptEst-package.Rd | 8 ++++---- 5 files changed, 24 insertions(+), 17 deletions(-)
More information about SampleSizeSingleArmSurvival at CRAN
Permanent link
Title: Tree Taper Curves and Sorting Based on 'TapeR'
Description: Providing new german-wide 'TapeR' Models and functions for their
evaluation. Included are the most common tree species in Germany (Norway
spruce, Scots pine, European larch, Douglas fir, Silver fir as well as
European beech, Common/Sessile oak and Red oak). Many other species are mapped
to them so that 36 tree species / groups can be processed. Single trees are
defined by species code, one or multiple diameters in arbitrary measuring
height and tree height. The functions then provide information on diameters
along the stem, bark thickness, height of diameters, volume of the total or
parts of the trunk and total and component above-ground biomass. It is also
possible to calculate assortments from the taper curves. Uncertainty
information is provided for diameter, volume and component biomass estimation.
Author: Christian Vonderach [aut, cre],
Edgar Kublin [aut],
Gerald Kaendler [aut]
Maintainer: Christian Vonderach <christian.vonderach@forst.bwl.de>
Diff between TapeS versions 0.13.0 dated 2024-11-26 and 0.13.1 dated 2025-01-15
TapeS-0.13.0/TapeS/inst/NEWS.rd |only TapeS-0.13.1/TapeS/DESCRIPTION | 10 TapeS-0.13.1/TapeS/MD5 | 13 TapeS-0.13.1/TapeS/NEWS.md | 336 ++++++++--------- TapeS-0.13.1/TapeS/R/tprVolume.r | 641 ++++++++++++++++----------------- TapeS-0.13.1/TapeS/build/partial.rdb |binary TapeS-0.13.1/TapeS/inst/doc/tapes.html | 4 TapeS-0.13.1/TapeS/man/tprVolume.Rd | 4 8 files changed, 506 insertions(+), 502 deletions(-)
Title: Work with Open Road Traffic Casualty Data from Great Britain
Description: Tools to help download, process and analyse the UK road collision data collected using the
'STATS19' form. The datasets are provided as 'CSV' files with detailed road safety information about the
circumstances of car crashes and other incidents on the roads resulting in casualties in Great Britain
from 1979 to present. Tables are available on 'colissions' with the circumstances (e.g. speed limit
of road), information about 'vehicles' involved (e.g. type of vehicle), and 'casualties' (e.g. age).
The statistics relate only to events on public roads that were reported
to the police, and subsequently recorded, using the 'STATS19' collision reporting form. See
the Department for Transport website
<https://www.data.gov.uk/dataset/cb7ae6f0-4be6-4935-9277-47e5ce24a11f/road-accidents-safety-data> for more
information on these datasets.
The package is described in a paper in the Journal of Open Source Software
(Lovelace et al. 2019) <doi:10.21105/joss.01181>.
See
Gilardi et al. (202 [...truncated...]
Author: Robin Lovelace [aut, cre] ,
Malcolm Morgan [aut] ,
Layik Hama [aut] ,
Mark Padgham [aut] ,
David Ranzolin [rev],
Adam Sparks [rev, ctb] ,
Ivo Wengraf [ctb],
RAC Foundation [fnd]
Maintainer: Robin Lovelace <rob00x@gmail.com>
Diff between stats19 versions 3.3.0 dated 2025-01-12 and 3.3.1 dated 2025-01-15
DESCRIPTION | 6 MD5 | 23 NEWS.md | 4 R/dl.R | 14 README.md | 289 ++--- inst/doc/blog.html | 659 ++++++----- inst/doc/stats19-training-setup.html | 250 ++-- inst/doc/stats19-training.html | 1260 ++++++++++++++-------- inst/doc/stats19-vehicles.html | 243 ++-- inst/doc/stats19.html | 1764 +++++++++++++++++-------------- man/figures/README-crash-date-plot-1.png |binary man/figures/README-crash-time-plot-1.png |binary man/figures/README-unnamed-chunk-4-1.png |only 13 files changed, 2674 insertions(+), 1838 deletions(-)
Title: Landscape Connectivity, Habitat, and Protected Area Networks
Description: Given a landscape resistance surface, creates minimum planar graph
(Fall et al. (2007) <doi:10.1007/s10021-007-9038-7>) and grains of connectivity
(Galpern et al. (2012) <doi:10.1111/j.1365-294X.2012.05677.x>) models that can be
used to calculate effective distances for landscape connectivity at multiple scales.
Documentation is provided by several vignettes, and a paper
(Chubaty, Galpern & Doctolero (2020) <doi:10.1111/2041-210X.13350>).
Author: Paul Galpern [aut, cph] ,
Sam Doctolero [aut],
Alex M Chubaty [aut, cre]
Maintainer: Alex M Chubaty <achubaty@for-cast.ca>
Diff between grainscape versions 0.4.4 dated 2023-04-20 and 0.5.0 dated 2025-01-15
DESCRIPTION | 23 MD5 | 166 - NEWS.md | 42 R/GOC.R | 32 R/MPG.R | 36 R/RcppExports.R | 14 R/classes.R | 10 R/corridor.R | 41 R/distance.R | 2 R/export.R | 91 R/ggGS.R | 12 R/grainscape-deprecated.R | 6 R/graphdf.R | 41 R/habitatConnectivityEngine.R | 22 R/patchFilter.R | 7 R/plot.R | 13 R/point.R | 18 R/theme_grainscape.R | 4 R/threshold.R | 8 README.md | 2 build/partial.rdb |binary build/vignette.rds |binary inst/WORDLIST | 22 inst/doc/MPG_algorithm.R | 90 inst/doc/MPG_algorithm.Rmd | 261 +- inst/doc/MPG_algorithm.pdf |binary inst/doc/grainscape_vignette.R | 27 inst/doc/grainscape_vignette.Rmd | 26 inst/doc/grainscape_vignette.pdf |binary inst/examples/example_threshold.R | 2 inst/extdata/issue72_patchID.tif |only inst/extdata/issue72_resistance.tif |only inst/include/DataStruct.h | 223 +- inst/include/Engine.h | 118 - man/MPG.Rd | 10 man/corridor.Rd | 4 man/distance.Rd | 2 man/dot-abbrev.Rd |only man/export.Rd | 8 man/ggGS.Rd | 12 man/goc-class.Rd | 4 man/grainscape-deprecated.Rd | 4 man/grainscape-package.Rd | 2 man/habConnEngine.Rd | 4 man/habConnRcpp.Rd | 12 man/patchFilter.Rd | 7 man/plot.Rd | 5 man/point.Rd | 4 man/show.Rd | 3 man/theme_grainscape.Rd | 4 man/threshold.Rd | 2 src/Engine.cpp | 998 +++++----- src/grainscape_init.c | 1 src/rcpp_HabConnEngine.cpp | 67 tests/test-all.R | 7 tests/testthat/test-MPG.R | 8 tests/testthat/test-corridor-distance-point.R | 22 tests/testthat/test-export.R |only vignettes/MPG_algorithm.Rmd | 261 +- vignettes/MPG_algorithm_files |only vignettes/bibliography.bib | 462 +--- vignettes/grainscape_vignette.Rmd | 26 vignettes/grainscape_vignette_files/figure-latex/figure_03-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_04-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_05-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_06-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_07-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_08-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_09-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_10-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_11-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_12-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_13-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_14-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_15-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_16-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_17-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_18-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_19-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_20-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_21-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_22-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_23-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_24-1.pdf |binary vignettes/grainscape_vignette_files/figure-latex/figure_25-1.pdf |binary 85 files changed, 1708 insertions(+), 1590 deletions(-)
Title: GLCM Textures of Raster Layers
Description: Calculates grey level co-occurrence matrix (GLCM) based texture measures (Hall-Beyer (2017) <https://prism.ucalgary.ca/bitstream/handle/1880/51900/texture%20tutorial%20v%203_0%20180206.pdf>; Haralick et al. (1973) <doi:10.1109/TSMC.1973.4309314>) of raster layers using a sliding rectangular window. It also includes functions to quantize a raster into grey levels as well as tabulate a glcm and calculate glcm texture metrics for a matrix.
Author: Alexander Ilich [aut, cre]
Maintainer: Alexander Ilich <ailich@usf.edu>
Diff between GLCMTextures versions 0.4.2 dated 2024-08-19 and 0.5 dated 2025-01-15
DESCRIPTION | 13 - MD5 | 40 +-- R/glcm_metrics.R | 93 ++++--- R/glcm_textures.R | 274 +++++++++++----------- R/make_glcm.R | 72 +++--- R/quantize_raster.R | 145 ++++++------ README.md | 47 +-- build/vignette.rds |binary inst/doc/README.R | 12 - inst/doc/README.html | 60 +---- inst/testdata |only man/figures/README-elevation-1.png |binary man/figures/README-textures1-1.png |binary man/figures/README-textures3-1.png |binary man/fragments/README_Frag.Rmd | 444 ++++++++++++++++++------------------- man/glcm_metrics.Rd | 7 man/glcm_textures.Rd | 17 - man/make_glcm.Rd | 2 man/quantize_raster.Rd | 15 - src/glcm_cpp_functions.cpp | 10 tests |only 21 files changed, 639 insertions(+), 612 deletions(-)
Title: Interactively Visualize Structural Equation Modeling Diagrams
Description: It is an R package and web-based application, allowing users to perform interactive and reproducible visualizations of path diagrams for structural equation modeling (SEM) and networks using the 'ggplot2' engine. Its app (built with 'shiny') provides an interface that allows extensive customization, and creates CSV outputs, which can then be used to recreate the figures either using the web app or script-based workflow.
Author: Seung Hyun Min [aut, cre]
Maintainer: Seung Hyun Min <seung.min@mail.mcgill.ca>
Diff between ggsem versions 0.2.0 dated 2025-01-07 and 0.2.1 dated 2025-01-15
DESCRIPTION | 8 MD5 | 18 NAMESPACE | 1 R/draw_lines.R | 14 R/draw_loops.R | 4 R/draw_points.R | 9 R/launch.R | 1 inst/shiny/app.R | 1783 +++++++++++++++------ inst/shiny/rsconnect/shinyapps.io/smin95/ggsem.dcf | 2 man/draw_loops.Rd | 2 10 files changed, 1335 insertions(+), 507 deletions(-)
Title: 'C++' Standard Template Library Containers
Description: Use 'C++' Standard Template Library containers interactively in R. Includes sets, unordered sets, multisets, unordered multisets, maps,
unordered maps, multimaps, unordered multimaps, stacks, queues, priority queues, vectors, deques, forward lists, and lists.
Author: Christian Dueben [aut, cre]
Maintainer: Christian Dueben <cdueben.ml+cran@proton.me>
Diff between cppcontainers versions 1.0.3 dated 2025-01-09 and 1.0.4 dated 2025-01-15
DESCRIPTION | 6 - MD5 | 106 ++++++++++++++++----------------- NEWS.md | 3 R/map.R | 2 man/cpp_map.Rd | 2 tests/testthat/test-assign.R | 1 tests/testthat/test-at.R | 1 tests/testthat/test-back.R | 1 tests/testthat/test-bucket_count.R | 1 tests/testthat/test-capacity.R | 1 tests/testthat/test-clear.R | 1 tests/testthat/test-contains.R | 1 tests/testthat/test-count.R | 1 tests/testthat/test-emplace.R | 1 tests/testthat/test-emplace_after.R | 1 tests/testthat/test-emplace_back.R | 1 tests/testthat/test-emplace_front.R | 1 tests/testthat/test-empty.R | 1 tests/testthat/test-erase.R | 1 tests/testthat/test-erase_after.R | 1 tests/testthat/test-flip.R | 1 tests/testthat/test-front.R | 1 tests/testthat/test-insert.R | 1 tests/testthat/test-insert_after.R | 1 tests/testthat/test-insert_or_assign.R | 1 tests/testthat/test-load_factor.R | 1 tests/testthat/test-max_bucket_count.R | 1 tests/testthat/test-max_load_factor.R | 1 tests/testthat/test-max_size.R | 1 tests/testthat/test-merge.R | 1 tests/testthat/test-operators.R | 1 tests/testthat/test-pop.R | 1 tests/testthat/test-pop_back.R | 1 tests/testthat/test-pop_front.R | 1 tests/testthat/test-print.R | 1 tests/testthat/test-push.R | 1 tests/testthat/test-push_back.R | 1 tests/testthat/test-push_front.R | 1 tests/testthat/test-rehash.R | 1 tests/testthat/test-remove..R | 1 tests/testthat/test-reserve.R | 1 tests/testthat/test-resize.R | 1 tests/testthat/test-reverse.R | 1 tests/testthat/test-shrink_to_fit.R | 1 tests/testthat/test-size.R | 1 tests/testthat/test-sort.R | 1 tests/testthat/test-sorting.R | 1 tests/testthat/test-splice.R | 1 tests/testthat/test-splice_after.R | 1 tests/testthat/test-to_r.R | 1 tests/testthat/test-top.R | 1 tests/testthat/test-try_emplace.R | 1 tests/testthat/test-type.R | 1 tests/testthat/test-unique.R | 1 54 files changed, 110 insertions(+), 58 deletions(-)
Title: Color Calculations with Emphasis on Spectral Data
Description: Calculate with spectral properties of light sources, materials, cameras, eyes, and scanners.
Build complex systems from simpler parts using a spectral product algebra. For light sources,
compute CCT, CRI, and SSI. For object colors, compute optimal colors and Logvinenko coordinates.
Work with the standard CIE illuminants and color matching functions, and read spectra from
text files, including CGATS files. Estimate a spectrum from its response. A user guide and 9 vignettes are included.
Author: Glenn Davis [aut, cre]
Maintainer: Glenn Davis <gdavis@gluonics.com>
Diff between colorSpec versions 1.5-0 dated 2024-01-28 and 1.6-0 dated 2025-01-15
colorSpec-1.5-0/colorSpec/R/logging-levels.R |only colorSpec-1.6-0/colorSpec/DESCRIPTION | 12 colorSpec-1.6-0/colorSpec/MD5 | 129 - colorSpec-1.6-0/colorSpec/NAMESPACE | 57 colorSpec-1.6-0/colorSpec/NEWS.md | 6 colorSpec-1.6-0/colorSpec/R/CGATS.R | 46 colorSpec-1.6-0/colorSpec/R/atmosphere.R | 12 colorSpec-1.6-0/colorSpec/R/basic.R | 14 colorSpec-1.6-0/colorSpec/R/colorSpec.CCT.R | 4 colorSpec-1.6-0/colorSpec/R/colorSpec.CRI.R | 234 +- colorSpec-1.6-0/colorSpec/R/colorSpec.R | 78 colorSpec-1.6-0/colorSpec/R/colorSpec.SSI.R | 14 colorSpec-1.6-0/colorSpec/R/colorSpec.actinometric.R | 8 colorSpec-1.6-0/colorSpec/R/colorSpec.calibrate.R | 38 colorSpec-1.6-0/colorSpec/R/colorSpec.comp.R | 38 colorSpec-1.6-0/colorSpec/R/colorSpec.emulate.R | 32 colorSpec-1.6-0/colorSpec/R/colorSpec.interpolate.R | 8 colorSpec-1.6-0/colorSpec/R/colorSpec.invert.R | 46 colorSpec-1.6-0/colorSpec/R/colorSpec.metrics.R | 10 colorSpec-1.6-0/colorSpec/R/colorSpec.ops.R | 74 colorSpec-1.6-0/colorSpec/R/colorSpec.optimal.R | 60 colorSpec-1.6-0/colorSpec/R/colorSpec.photometric.R | 2 colorSpec-1.6-0/colorSpec/R/colorSpec.plot.R | 370 +-- colorSpec-1.6-0/colorSpec/R/colorSpec.product.R | 66 colorSpec-1.6-0/colorSpec/R/colorSpec.ptransform.R | 12 colorSpec-1.6-0/colorSpec/R/colorSpec.radiometric.R | 8 colorSpec-1.6-0/colorSpec/R/colorSpec.read.R | 72 colorSpec-1.6-0/colorSpec/R/colorSpec.summary.R | 2 colorSpec-1.6-0/colorSpec/R/events.R | 20 colorSpec-1.6-0/colorSpec/R/interp.R | 18 colorSpec-1.6-0/colorSpec/R/logger.R |only colorSpec-1.6-0/colorSpec/R/logging.R | 166 - colorSpec-1.6-0/colorSpec/R/options.R | 271 +- colorSpec-1.6-0/colorSpec/R/rbind.super.R | 4 colorSpec-1.6-0/colorSpec/R/reparam.R | 14 colorSpec-1.6-0/colorSpec/R/utils.R | 313 +-- colorSpec-1.6-0/colorSpec/R/zonogon.R | 28 colorSpec-1.6-0/colorSpec/R/zonogon3.R | 6 colorSpec-1.6-0/colorSpec/R/zonohedron.R | 66 colorSpec-1.6-0/colorSpec/build/vignette.rds |binary colorSpec-1.6-0/colorSpec/inst/doc/blueflame.pdf |binary colorSpec-1.6-0/colorSpec/inst/doc/colorSpec-guide.R | 2 colorSpec-1.6-0/colorSpec/inst/doc/colorSpec-guide.Rmd | 63 colorSpec-1.6-0/colorSpec/inst/doc/colorSpec-guide.html | 1128 ++++++++--- colorSpec-1.6-0/colorSpec/inst/doc/convexity.pdf |binary colorSpec-1.6-0/colorSpec/inst/doc/emulation.pdf |binary colorSpec-1.6-0/colorSpec/inst/doc/gallery.pdf |binary colorSpec-1.6-0/colorSpec/inst/doc/inversion.pdf |binary colorSpec-1.6-0/colorSpec/inst/doc/lens-aging.pdf |binary colorSpec-1.6-0/colorSpec/inst/doc/optimals.pdf |binary colorSpec-1.6-0/colorSpec/inst/doc/phenolred.R | 16 colorSpec-1.6-0/colorSpec/inst/doc/phenolred.html | 361 +-- colorSpec-1.6-0/colorSpec/inst/doc/photoncounting.R | 10 colorSpec-1.6-0/colorSpec/inst/doc/photoncounting.html | 266 +- colorSpec-1.6-0/colorSpec/inst/extdata/targets/A70.ti3 |only colorSpec-1.6-0/colorSpec/inst/extdata/targets/TCSforCRI.txt | 1 colorSpec-1.6-0/colorSpec/man/computeCCT.Rd | 3 colorSpec-1.6-0/colorSpec/man/computeCRI.Rd | 137 + colorSpec-1.6-0/colorSpec/man/logging.Rd | 32 colorSpec-1.6-0/colorSpec/man/options.Rd | 23 colorSpec-1.6-0/colorSpec/man/plot.Rd | 1 colorSpec-1.6-0/colorSpec/man/readCGATS.Rd | 2 colorSpec-1.6-0/colorSpec/tests/test-CGATS.R | 16 colorSpec-1.6-0/colorSpec/tests/test-read.R | 4 colorSpec-1.6-0/colorSpec/tests/test-sink.R | 9 colorSpec-1.6-0/colorSpec/vignettes/bibliography.bib | 11 colorSpec-1.6-0/colorSpec/vignettes/colorSpec-guide.Rmd | 63 67 files changed, 2679 insertions(+), 1827 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-09-03 0.9.9
2024-08-29 0.9.8
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-06-10 0.2.0
2017-02-23 0.1.3
2017-01-15 0.1.2
2014-07-29 0.1.1
2014-04-12 0.1