Title: German Election Database (GERDA)
Description: Provides tools to download comprehensive datasets of local,
state, and federal election results in Germany from 1990 to 2025. The package
facilitates access to data on turnout, vote shares for major parties, and
demographic information across different levels of government (municipal, state,
and federal). It offers access to geographically harmonized datasets
that account for changes in municipal boundaries over time and incorporate
mail-in voting districts. Users can easily retrieve, clean, and standardize
German electoral data, making it ready for analysis. Data is sourced from
<https://github.com/awiedem/german_election_data>.
Author: Hanno Hilbig [aut, cre]
Maintainer: Hanno Hilbig <hhilbig@ucdavis.edu>
Diff between gerda versions 0.3.0 dated 2025-10-29 and 0.4.0 dated 2025-11-12
DESCRIPTION | 6 +-- MD5 | 20 ++++++------ NEWS.md | 10 ++++++ R/gerda_data_list.R | 24 +++++++-------- R/load_gerda_web.R | 54 ++++++++++++++++++++++++++++------- README.md | 4 +- inst/doc/gerda.R | 2 - inst/doc/gerda.Rmd | 2 - inst/doc/gerda.html | 2 - tests/testthat/test-load_gerda_web.R | 49 +++++++++++++++++++++++++++++++ vignettes/gerda.Rmd | 2 - 11 files changed, 133 insertions(+), 42 deletions(-)
Title: Double Machine Learning for Static Panel Models with Fixed
Effects
Description: The 'xtdml' package implements partially linear panel regression (PLPR) models with high-dimensional confounding variables and an exogenous treatment variable within the double machine learning framework. The package is used to estimate the structural parameter (treatment effect) in static panel data models with fixed effects using the approaches established in Clarke and Polselli (2025) <doi:10.1093/ectj/utaf011>. 'xtdml' is built on the object-oriented package 'DoubleML' (Bach et al., 2024) <doi:10.18637/jss.v108.i03> using the 'mlr3' ecosystem.
Author: Annalivia Polselli [aut, cre]
Maintainer: Annalivia Polselli <apolselli.econ@gmail.com>
Diff between xtdml versions 0.1.8 dated 2025-11-06 and 0.1.9 dated 2025-11-12
DESCRIPTION | 8 MD5 | 15 R/helper.R | 896 +++++++++++++++---------------- R/xtdml_data.R | 130 ++-- R/xtdml_main.R | 13 R/xtdml_plr.R | 1081 +++++++++++++++++++------------------- README.md |only man/xtdml_data_from_data_frame.Rd | 2 man/xtdml_plr.Rd | 86 +-- 9 files changed, 1120 insertions(+), 1111 deletions(-)
Title: Custom Visualizations & Functions for Streamlined Analyses of
Single Cell Sequencing
Description: Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.
Author: Samuel Marsh [aut, cre] ,
Ming Tang [ctb],
Velina Kozareva [ctb],
Lucas Graybuck [ctb],
Zoe Clarke [ctb]
Maintainer: Samuel Marsh <sccustomize@gmail.com>
Diff between scCustomize versions 3.2.1 dated 2025-11-08 and 3.2.2 dated 2025-11-12
scCustomize-3.2.1/scCustomize/R/Read_&_Write_Data.R |only scCustomize-3.2.2/scCustomize/DESCRIPTION | 8 - scCustomize-3.2.2/scCustomize/MD5 | 50 +++++----- scCustomize-3.2.2/scCustomize/NEWS.md | 21 ++++ scCustomize-3.2.2/scCustomize/R/Internal_Utilities.R | 12 -- scCustomize-3.2.2/scCustomize/R/LIGER_Internal_Utilities.R | 11 -- scCustomize-3.2.2/scCustomize/R/LIGER_Utilities.R | 6 - scCustomize-3.2.2/scCustomize/R/Object_Utilities.R | 2 scCustomize-3.2.2/scCustomize/R/Plotting_Seurat.R | 2 scCustomize-3.2.2/scCustomize/R/QC_Utilities_Seurat.R | 8 - scCustomize-3.2.2/scCustomize/R/Read_Write_Data.R |only scCustomize-3.2.2/scCustomize/man/Create_10X_H5.Rd | 2 scCustomize-3.2.2/scCustomize/man/Create_CellBender_Merged_Seurat.Rd | 2 scCustomize-3.2.2/scCustomize/man/ElbowPlot_scCustom.Rd | 1 scCustomize-3.2.2/scCustomize/man/Map_New_Meta.Rd | 1 scCustomize-3.2.2/scCustomize/man/Pull_Directory_List.Rd | 2 scCustomize-3.2.2/scCustomize/man/Read10X_GEO.Rd | 2 scCustomize-3.2.2/scCustomize/man/Read10X_Multi_Directory.Rd | 2 scCustomize-3.2.2/scCustomize/man/Read10X_h5_GEO.Rd | 2 scCustomize-3.2.2/scCustomize/man/Read10X_h5_Multi_Directory.Rd | 2 scCustomize-3.2.2/scCustomize/man/Read_Add_cNMF.Rd | 2 scCustomize-3.2.2/scCustomize/man/Read_CellBender_h5_Mat.Rd | 2 scCustomize-3.2.2/scCustomize/man/Read_CellBender_h5_Multi_Directory.Rd | 2 scCustomize-3.2.2/scCustomize/man/Read_CellBender_h5_Multi_File.Rd | 2 scCustomize-3.2.2/scCustomize/man/Read_GEO_Delim.Rd | 2 scCustomize-3.2.2/scCustomize/man/Read_Metrics_10X.Rd | 2 scCustomize-3.2.2/scCustomize/man/Read_Metrics_CellBender.Rd | 2 27 files changed, 77 insertions(+), 73 deletions(-)
Title: A Multi-Process 'dplyr' Backend
Description: Partition a data frame across multiple worker processes to
provide simple multicore parallelism.
Author: Hadley Wickham [aut, cre],
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between multidplyr versions 0.1.3 dated 2023-03-22 and 0.1.4 dated 2025-11-12
DESCRIPTION | 15 -- LICENSE | 2 MD5 | 41 ++--- NEWS.md | 4 R/cluster-call.R | 15 +- R/cluster-utils.R | 4 R/cluster.R | 31 ++-- R/dplyr-dual.R | 36 ++++ R/dplyr-single.R | 2 R/partydf.R | 18 +- R/utils.R | 1 README.md | 40 ++--- build/vignette.rds |binary inst/doc/multidplyr.R | 4 inst/doc/multidplyr.html | 267 ++++++++++++++++++------------------ man/party_df.Rd | 2 tests/testthat/_snaps/dplyr-dual.md |only tests/testthat/_snaps/partydf.md | 28 +++ tests/testthat/test-cluster-call.R | 6 tests/testthat/test-dplyr-dual.R | 4 tests/testthat/test-dplyr-single.R | 13 + tests/testthat/test-partydf.R | 20 +- 22 files changed, 316 insertions(+), 237 deletions(-)
Title: Kriging-Based Optimization for Computer Experiments
Description: Efficient Global Optimization (EGO) algorithm as described in "Roustant et al. (2012)" <doi:10.18637/jss.v051.i01> and adaptations for problems with noise ("Picheny and Ginsbourger, 2012") <doi:10.1016/j.csda.2013.03.018>, parallel infill, and problems with constraints.
Author: Mickael Binois [cre, ctb],
Victor Picheny [aut],
David Ginsbourger [aut],
Olivier Roustant [aut],
Sebastien Marmin [ctb],
Tobias Wagner [ctb]
Maintainer: Mickael Binois <mickael.binois@inria.fr>
This is a re-admission after prior archival of version 2.1.1 dated 2021-02-01
Diff between DiceOptim versions 2.1.1 dated 2021-02-01 and 2.1.2 dated 2025-11-12
DESCRIPTION | 31 +- MD5 | 114 ++++----- NAMESPACE | 18 + R/AEI.R | 207 ++++++++-------- R/AEI.grad.R | 127 +++++----- R/AKG.R | 184 +++++++------- R/AKG.grad.R | 128 +++++----- R/DiceOptim-package.R | 466 ++++++++++++++++++------------------- R/EGO.cst.R | 459 ++++++++++++++++++------------------ R/EGO.nsteps.R | 486 +++++++++++++++++++-------------------- R/EI.R | 158 ++++++------ R/EI.grad.R | 192 +++++++-------- R/EQI.R | 198 +++++++-------- R/EQI.grad.R | 130 +++++----- R/ParrConstraint.R | 30 +- R/TREGO.nsteps.R | 241 +++++++++---------- R/branin2.R | 48 +-- R/checkPredict.R | 38 +-- R/crit_AL.R | 300 ++++++++++++------------ R/crit_EFI.R | 254 ++++++++++---------- R/crit_SUR_cst.R | 266 ++++++++++----------- R/critcst_optimizer.R | 360 ++++++++++++++-------------- R/easyEGO.R | 221 ++++++++--------- R/easyEGO.cst.R | 399 ++++++++++++++++---------------- R/fastEGO.nsteps.R | 224 ++++++++--------- R/fastfun.R | 77 +++--- R/goldsteinprice.R | 52 ++-- R/hartman4.R | 49 +-- R/integration_design_cst.R | 128 +++++----- R/kriging.quantile.R | 182 +++++++------- R/kriging.quantile.grad.R | 164 ++++++------- R/max_AEI.R | 156 ++++++------ R/max_AKG.R | 162 ++++++------- R/max_EI.R | 368 ++++++++++++++--------------- R/max_EQI.R | 158 ++++++------ R/max_crit.R | 126 +++++----- R/max_qEI.R | 350 ++++++++++++++-------------- R/min_quantile.R | 152 ++++++------ R/noisy.optimizer.R | 408 ++++++++++++++++---------------- R/prob.of.feasible.improvement.R | 4 R/qEGO.nsteps.R | 374 +++++++++++++++--------------- R/qEI.R | 236 +++++++++--------- R/rosenbrock4.R | 48 +-- R/sampleFromEI.R | 296 +++++++++++------------ R/sphere6.R | 48 +-- R/test_feas_vec.R | 20 - R/update_km_noisyEGO.R | 68 ++--- man/DiceOptim-package.Rd | 5 man/EGO.cst.Rd | 15 - man/crit_AL.Rd | 12 man/critcst_optimizer.Rd | 4 man/easyEGO.Rd | 42 +-- man/easyEGO.cst.Rd | 23 - man/fastfun-class.Rd | 8 man/integration_design_cst.Rd | 6 man/max_qEI.Rd | 6 man/qEGO.nsteps.Rd | 4 man/sampleFromEI.Rd | 2 58 files changed, 4523 insertions(+), 4509 deletions(-)
Title: Convert and Impute Dates to ISO Standard ("International
Organization for Standardization")
Description: Provides functions to convert and impute date values to the ISO 8601
standard format. The package automatically recognizes date patterns within a
data frame and transforms them into consistent ISO-formatted dates. It also
supports imputing missing month or day components in partial date strings
using user-defined rules. Only one date format can be applied within a single
data frame column.
Author: Lukasz Andrzejewski [aut, cre]
Maintainer: Lukasz Andrzejewski <lukasz.coding@gmail.com>
Diff between datetoiso versions 0.2.0 dated 2023-12-01 and 1.0.0 dated 2025-11-12
DESCRIPTION | 21 ++- MD5 | 19 +-- NAMESPACE | 11 + NEWS.md | 57 +++++---- R/date_to_iso.R | 192 +++++++++++++++--------------- R/dfiso.R | 6 R/impute_date.R |only R/viso.R | 6 man/impute_date.Rd |only man/impute_date_dmy.Rd |only man/impute_date_ymd.Rd |only tests/testthat/test-dfiso.R | 240 +++++++++++++++++++------------------- tests/testthat/test-impute_date.R |only 13 files changed, 293 insertions(+), 259 deletions(-)
Title: Process Text and Compute Linguistic Alignment in Conversation
Transcripts
Description: Imports conversation transcripts into R, concatenates them into a single dataframe appending event identifiers, cleans and formats the text, then yokes user-specified psycholinguistic database values to each word. 'ConversationAlign' then computes alignment indices between two interlocutors across each transcript for >40 possible semantic, lexical, and affective dimensions. In addition to alignment, 'ConversationAlign' also produces a table of analytics (e.g., token count, type-token-ratio) in a summary table describing your particular text corpus.
Author: Jamie Reilly [aut, cre] ,
Virginia Ulichney [aut],
Ben Sacks [aut],
Sarah Weinstein [ctb],
Chelsea Helion [ctb],
Gus Cooney [ctb]
Maintainer: Jamie Reilly <jamie_reilly@temple.edu>
Diff between ConversationAlign versions 0.3.2 dated 2025-07-30 and 0.4.0 dated 2025-11-12
DESCRIPTION | 15 - MD5 | 48 ++-- NAMESPACE | 5 R/compute_auc.R | 254 ++++++++++++++++-------- R/compute_lagcorr.R | 2 R/generate_shams.R |only R/prep_dyads.R | 22 +- R/summarize_dyads.R | 13 - build/vignette.rds |binary inst/NEWS.md | 19 + inst/doc/ConversationAlign_Introduction.Rmd | 6 inst/doc/ConversationAlign_Introduction.html | 17 - inst/doc/ConversationAlign_Step1_Read.html | 4 inst/doc/ConversationAlign_Step2_Prep.Rmd | 3 inst/doc/ConversationAlign_Step2_Prep.html | 9 inst/doc/ConversationAlign_Step3_Summarize.R | 11 - inst/doc/ConversationAlign_Step3_Summarize.Rmd | 17 + inst/doc/ConversationAlign_Step3_Summarize.html | 172 ++++++++++++++-- inst/doc/ConversationAlign_Step4_Analytics.html | 4 man/generate_shams.Rd |only man/prep_dyads.Rd | 3 tests/testthat/test-compute_auc.R | 16 - tests/testthat/test-summarize_dyads.R | 2 vignettes/ConversationAlign_Introduction.Rmd | 6 vignettes/ConversationAlign_Step2_Prep.Rmd | 3 vignettes/ConversationAlign_Step3_Summarize.Rmd | 17 + 26 files changed, 496 insertions(+), 172 deletions(-)
More information about ConversationAlign at CRAN
Permanent link
Title: Your Friendly Solution to Managing Browser Cookies
Description: A convenient tool to store and format browser cookies and use them
in 'HTTP' requests (for example, through 'httr2', 'httr' or 'curl').
Author: Johannes B. Gruber [aut, cre]
Maintainer: Johannes B. Gruber <JohannesB.Gruber@gmail.com>
Diff between cookiemonster versions 0.0.3 dated 2023-11-30 and 0.0.4 dated 2025-11-12
cookiemonster-0.0.3/cookiemonster/man/figures |only cookiemonster-0.0.4/cookiemonster/DESCRIPTION | 22 - cookiemonster-0.0.4/cookiemonster/MD5 | 47 +- cookiemonster-0.0.4/cookiemonster/NAMESPACE | 3 cookiemonster-0.0.4/cookiemonster/NEWS.md | 6 cookiemonster-0.0.4/cookiemonster/R/browser.r |only cookiemonster-0.0.4/cookiemonster/R/get.r | 16 cookiemonster-0.0.4/cookiemonster/R/req_cookiemoster_set.r |only cookiemonster-0.0.4/cookiemonster/R/set.r | 27 + cookiemonster-0.0.4/cookiemonster/R/sysdata.rda |only cookiemonster-0.0.4/cookiemonster/README.md | 77 +++- cookiemonster-0.0.4/cookiemonster/build/vignette.rds |binary cookiemonster-0.0.4/cookiemonster/inst/WORDLIST | 5 cookiemonster-0.0.4/cookiemonster/inst/doc/cookies.R | 39 +- cookiemonster-0.0.4/cookiemonster/inst/doc/cookies.Rmd | 53 ++ cookiemonster-0.0.4/cookiemonster/inst/doc/cookies.html | 190 ++++++---- cookiemonster-0.0.4/cookiemonster/man/add_cookies.Rd | 5 cookiemonster-0.0.4/cookiemonster/man/get_cookies.Rd | 3 cookiemonster-0.0.4/cookiemonster/man/get_cookies_from_browser.Rd |only cookiemonster-0.0.4/cookiemonster/man/req_cookiemonster_set.Rd |only cookiemonster-0.0.4/cookiemonster/tests/testthat/test-browser.R |only cookiemonster-0.0.4/cookiemonster/tests/testthat/test-get.R | 7 cookiemonster-0.0.4/cookiemonster/tests/testthat/test-req_cookiemonster_set.R |only cookiemonster-0.0.4/cookiemonster/tests/testthat/test-set.R | 2 cookiemonster-0.0.4/cookiemonster/vignettes/cookies.Rmd | 53 ++ 25 files changed, 419 insertions(+), 136 deletions(-)
Title: Kernel Smoothing Tools for Philology and Historical Dialectology
Description: Contains kernel smoothing tools designed for use by historical
dialectologists and philologists for exploring spatial and temporal patterns
in noisy historical language data, such as that obtained from historical texts.
The main way in which these might differ from other implementations of kernel
smoothing is that they assume that the function (linguistic variable) being
explored has the form of the relative frequency of a series of discrete
possibilities (linguistic variants). This package also offers a way of exploring
distributions in 2-dimensional space and in time with separate kernels, and
tools for identifying appropriate bandwidths for these.
Author: Tamsin Blaxter [aut, cre]
Maintainer: Tamsin Blaxter <tamsinblaxter@gmail.com>
This is a re-admission after prior archival of version 0.1 dated 2021-02-25
Diff between kernelPhil versions 0.1 dated 2021-02-25 and 0.2 dated 2025-11-12
DESCRIPTION | 20 +++---- MD5 | 14 ++--- NAMESPACE | 1 R/1d.smooths.r | 6 +- R/2d.smooths.r | 79 ++++++++++++++++++++---------- R/3d.smooths.r | 4 + R/bandwidths.r | 28 ++++++---- man/calculate.bandwidths.by.resolution.Rd | 2 8 files changed, 96 insertions(+), 58 deletions(-)
Title: Add Tests to Examples
Description: Add tests in-line in examples. Provides standalone functions for
facilitating easier test writing in Rd files. However, a more familiar
interface is provided using 'roxygen2' tags. Tools are also provided for
facilitating package configuration and use with 'testthat'.
Author: Doug Kelkhoff [aut, cre]
Maintainer: Doug Kelkhoff <doug.kelkhoff@gmail.com>
Diff between testex versions 0.2.0 dated 2024-04-14 and 0.2.1 dated 2025-11-12
DESCRIPTION | 9 MD5 | 25 +- NEWS.md | 7 R/testthat.R | 51 +++-- build/vignette.rds |binary inst/WORDLIST |only inst/doc/configuration.html | 180 +++++++++---------- inst/doc/interface_layers.html | 260 ++++++++++++++-------------- inst/pkg.example/DESCRIPTION | 2 inst/pkg.example/man/fn_roxygen_multiple.Rd | 2 man/test_files.Rd | 4 tests/testthat/setup.R | 6 tests/testthat/test-testex.R | 8 tests/testthat/test-testthat.R | 8 14 files changed, 298 insertions(+), 264 deletions(-)
Title: Spatially Explicit Population Models of Disease Transmission in
Wildlife
Description: This extension of the pattern-oriented modeling framework of the
'poems' package provides a collection of modules and functions customized
for modeling disease transmission on a population scale in a spatiotemporally
explicit manner. This includes seasonal time steps, dispersal functions that
track disease state of dispersers, results objects that store disease states,
and a population simulator that includes disease dynamics.
Author: July Pilowsky [aut, cre] ,
National Science Foundation Biology Integration Institute 2213854 [fnd]
Maintainer: July Pilowsky <pilowskyj@caryinstitute.org>
Diff between epizootic versions 1.0.0 dated 2024-10-02 and 2.0.0 dated 2025-11-12
epizootic-1.0.0/epizootic/R/disease_dispersal.r |only epizootic-1.0.0/epizootic/inst/doc/mycoplasma.R |only epizootic-1.0.0/epizootic/tests/testthat/test_results/sample_1_results.qs |only epizootic-2.0.0/epizootic/DESCRIPTION | 17 epizootic-2.0.0/epizootic/MD5 | 42 epizootic-2.0.0/epizootic/NAMESPACE | 13 epizootic-2.0.0/epizootic/NEWS.md | 11 epizootic-2.0.0/epizootic/R/DiseaseModel.R | 150 +- epizootic-2.0.0/epizootic/R/SimulationHandler.R | 351 ++++-- epizootic-2.0.0/epizootic/R/check_simulator_inputs.R | 536 +++++----- epizootic-2.0.0/epizootic/R/disease_dispersal.R |only epizootic-2.0.0/epizootic/R/disease_simulator.R | 125 +- epizootic-2.0.0/epizootic/R/epizootic-package.R | 5 epizootic-2.0.0/epizootic/build/vignette.rds |binary epizootic-2.0.0/epizootic/inst/doc/mycoplasma.Rmd | 414 ------- epizootic-2.0.0/epizootic/inst/doc/mycoplasma.html | 470 -------- epizootic-2.0.0/epizootic/man/SimulationHandler.Rd | 2 epizootic-2.0.0/epizootic/man/disease_dispersal.Rd | 2 epizootic-2.0.0/epizootic/man/disease_simulator.Rd | 54 - epizootic-2.0.0/epizootic/tests/testthat/test-SimulationHandler.R | 204 ++- epizootic-2.0.0/epizootic/tests/testthat/test-aspatial_siri_seasons.R | 366 ++++++ epizootic-2.0.0/epizootic/tests/testthat/test-disease_simulator.R | 388 +++++++ epizootic-2.0.0/epizootic/tests/testthat/test-disease_transitions.R |only epizootic-2.0.0/epizootic/tests/testthat/test_results/sample_1_results.qs2 |only epizootic-2.0.0/epizootic/vignettes/mycoplasma.Rmd | 414 ------- 25 files changed, 1693 insertions(+), 1871 deletions(-)
Title: Income Polarization Index
Description: Extremely fast and memory efficient computation of the DER (or PaF) income polarization index as proposed by Duclos J. Y., Esteban, J. and Ray D. (2004). "Polarization: concepts, measurement, estimation". Econometrica, 72(6): 1737--1772. <doi:10.1111/j.1468-0262.2004.00552.x>. The index may be computed for a single or for a range of values of the alpha-parameter and bootstrapping is also available.
Author: Michail Tsagris [aut, cre],
Christos Adam [aut]
Maintainer: Michail Tsagris <mtsagris@uoc.gr>
Diff between DER versions 1.2 dated 2025-11-05 and 1.3 dated 2025-11-12
DER-1.2/DER/R/colpafs.R |only DER-1.2/DER/R/colpafs2.R |only DER-1.2/DER/R/paf2.R |only DER-1.3/DER/DESCRIPTION | 16 +- DER-1.3/DER/MD5 | 39 +++--- DER-1.3/DER/NAMESPACE | 2 DER-1.3/DER/R/RcppExports.R | 24 ++++ DER-1.3/DER/R/paf.boot.R | 20 --- DER-1.3/DER/R/paf2.boot.R | 23 --- DER-1.3/DER/R/pafF.R | 27 ---- DER-1.3/DER/man/DER-package.Rd | 16 ++ DER-1.3/DER/man/colpafs.Rd | 29 +++- DER-1.3/DER/man/colpafs2.Rd | 30 +++-- DER-1.3/DER/man/kde.Rd |only DER-1.3/DER/man/paf.Rd | 37 ++++-- DER-1.3/DER/man/paf.boot.Rd | 30 +++-- DER-1.3/DER/man/paf2.Rd | 32 ++++- DER-1.3/DER/man/paf2.boot.Rd | 30 +++-- DER-1.3/DER/src/RcppExports.cpp | 88 ++++++++++++++- DER-1.3/DER/src/colpafs.cpp |only DER-1.3/DER/src/colpafs2.cpp |only DER-1.3/DER/src/kde.cpp |only DER-1.3/DER/src/paf.cpp | 233 +++++++++++++++++++++++++++++++--------- DER-1.3/DER/src/paf2.cpp |only DER-1.3/DER/src/pafF_helper.cpp |only 25 files changed, 485 insertions(+), 191 deletions(-)
Title: Base Tools for Semi-Automatic Reporting of Ordinary Surveys
Description: Scaffold an entire web-based report using template chunks, based on a small chapter overview and a dataset.
Highly adaptable with prefixes, suffixes, translations, etc. Also contains tools for password-protecting,
e.g. for each organization's report on a website. Developed for the common case of a survey across multiple organizations/sites
where each organization wants to obtain results for their organization compared with everyone else.
See 'saros' (<https://CRAN.R-project.org/package=saros>) for tools used for authors in the drafted reports.
Author: Stephan Daus [aut, cre, cph] ,
Nordic Institute for The Studies of Innovation, Research and Education
[fnd],
Kristiania University College [fnd]
Maintainer: Stephan Daus <stephus.daus@gmail.com>
Diff between saros.base versions 1.1.0 dated 2025-06-01 and 1.2.0 dated 2025-11-12
saros.base-1.1.0/saros.base/R/check_paths.R |only saros.base-1.1.0/saros.base/R/render_full_reports.R |only saros.base-1.1.0/saros.base/man/render_full_reports.Rd |only saros.base-1.2.0/saros.base/DESCRIPTION | 12 saros.base-1.2.0/saros.base/MD5 | 149 +- saros.base-1.2.0/saros.base/NAMESPACE | 4 saros.base-1.2.0/saros.base/NEWS.md | 109 + saros.base-1.2.0/saros.base/R/add_core_info_to_chapter_structure.R | 143 +- saros.base-1.2.0/saros.base/R/add_parsed_vars_to_chapter_structure.R | 8 saros.base-1.2.0/saros.base/R/arrange2.R | 39 saros.base-1.2.0/saros.base/R/attach_new_output_to_output.R | 30 saros.base-1.2.0/saros.base/R/check_variable_labels.R |only saros.base-1.2.0/saros.base/R/copy.R | 26 saros.base-1.2.0/saros.base/R/create_directory_structure.R | 432 +++--- saros.base-1.2.0/saros.base/R/create_email_credentials.R | 38 saros.base-1.2.0/saros.base/R/create_htaccess.R | 91 + saros.base-1.2.0/saros.base/R/create_r_files.R | 6 saros.base-1.2.0/saros.base/R/detect_malformed_quarto_project.R |only saros.base-1.2.0/saros.base/R/draft_report.R | 687 +++++----- saros.base-1.2.0/saros.base/R/find_stat_test.R | 108 - saros.base-1.2.0/saros.base/R/gen_qmd_chapters.R | 318 ++-- saros.base-1.2.0/saros.base/R/gen_qmd_file.R | 70 - saros.base-1.2.0/saros.base/R/initialize_saros_project.R | 8 saros.base-1.2.0/saros.base/R/log_unused_variables.R | 1 saros.base-1.2.0/saros.base/R/look_for_extended.R | 204 +- saros.base-1.2.0/saros.base/R/process_yaml.R | 10 saros.base-1.2.0/saros.base/R/qmd_utils.R |only saros.base-1.2.0/saros.base/R/read_main_password_file.R | 24 saros.base-1.2.0/saros.base/R/refer_main_password_file.R | 70 - saros.base-1.2.0/saros.base/R/refine_chapter_overview.R | 100 + saros.base-1.2.0/saros.base/R/remove_from_chapter_structure_if_all_na.R | 44 saros.base-1.2.0/saros.base/R/remove_from_chapter_structure_if_n_below.R | 32 saros.base-1.2.0/saros.base/R/remove_from_chapter_structure_if_no_overlap.R | 19 saros.base-1.2.0/saros.base/R/remove_from_chapter_structure_if_no_type_match.R | 40 saros.base-1.2.0/saros.base/R/remove_from_chapter_structure_if_non_significant.R | 39 saros.base-1.2.0/saros.base/R/sanitize_character_vector.R |only saros.base-1.2.0/saros.base/R/setup_access_restrictions.R | 96 - saros.base-1.2.0/saros.base/R/setup_mesos.R | 350 +++-- saros.base-1.2.0/saros.base/R/setup_mesos_structure.R |only saros.base-1.2.0/saros.base/R/sysdata.rda |only saros.base-1.2.0/saros.base/R/utils.R | 50 saros.base-1.2.0/saros.base/R/utils_qmd.R | 13 saros.base-1.2.0/saros.base/R/validate_access_folder_paths.R | 12 saros.base-1.2.0/saros.base/R/validate_chapter_structure.R | 100 + saros.base-1.2.0/saros.base/R/validate_draft_report_args.R | 213 +-- saros.base-1.2.0/saros.base/R/validate_refine_chapter_overview_args.R | 182 +- saros.base-1.2.0/saros.base/R/zzz.R | 380 +++++ saros.base-1.2.0/saros.base/build/vignette.rds |binary saros.base-1.2.0/saros.base/inst/WORDLIST | 6 saros.base-1.2.0/saros.base/inst/doc/vig_01_basic_file_system.html | 141 ++ saros.base-1.2.0/saros.base/inst/doc/vig_02_project_setup.html | 141 ++ saros.base-1.2.0/saros.base/inst/doc/vig_03_configure_report_cycle.html | 163 ++ saros.base-1.2.0/saros.base/inst/doc/vig_04_prepare_data.html | 217 ++- saros.base-1.2.0/saros.base/inst/doc/vig_05_standard_variable_names.html | 141 ++ saros.base-1.2.0/saros.base/inst/doc/vig_06_prepare_chapter_overview.html | 141 ++ saros.base-1.2.0/saros.base/inst/doc/vig_07_adjust_report_cycle_settings.html | 141 ++ saros.base-1.2.0/saros.base/inst/doc/vig_31_render.html | 141 ++ saros.base-1.2.0/saros.base/inst/doc/vig_32_render_problems.html | 141 ++ saros.base-1.2.0/saros.base/man/check_variable_labels.Rd |only saros.base-1.2.0/saros.base/man/convert_mesos_groups_to_df.Rd |only saros.base-1.2.0/saros.base/man/detect_malformed_quarto_project.Rd |only saros.base-1.2.0/saros.base/man/draft_report.Rd | 4 saros.base-1.2.0/saros.base/man/handle_numbering_inheritance.Rd | 14 saros.base-1.2.0/saros.base/man/refine_chapter_overview.Rd | 68 saros.base-1.2.0/saros.base/man/sanitize_chr_vec.Rd |only saros.base-1.2.0/saros.base/man/setup_access_restrictions.Rd | 34 saros.base-1.2.0/saros.base/man/setup_mesos.Rd | 21 saros.base-1.2.0/saros.base/man/setup_mesos_structure.Rd |only saros.base-1.2.0/saros.base/tests/testthat/test-arrange2.R | 186 +- saros.base-1.2.0/saros.base/tests/testthat/test-check_variable_labels.R |only saros.base-1.2.0/saros.base/tests/testthat/test-chunk_template_variant_4.R |only saros.base-1.2.0/saros.base/tests/testthat/test-create__headers_file.R |only saros.base-1.2.0/saros.base/tests/testthat/test-create_directory_structure.R |only saros.base-1.2.0/saros.base/tests/testthat/test-create_htaccess.R |only saros.base-1.2.0/saros.base/tests/testthat/test-detect_malformed_quarto_project.R |only saros.base-1.2.0/saros.base/tests/testthat/test-get_organize_by_opts.R |only saros.base-1.2.0/saros.base/tests/testthat/test-log_file_exclusions.R |only saros.base-1.2.0/saros.base/tests/testthat/test-read_main_password_file.R |only saros.base-1.2.0/saros.base/tests/testthat/test-refine_chapter_overview.R | 439 ++++++ saros.base-1.2.0/saros.base/tests/testthat/test-remove_from_chapter_structure_if_no_overlap.R | 6 saros.base-1.2.0/saros.base/tests/testthat/test-remove_from_chapter_structure_if_no_type_match.R | 60 saros.base-1.2.0/saros.base/tests/testthat/test-remove_from_chapter_structure_if_non_significant.R |only saros.base-1.2.0/saros.base/tests/testthat/test-replace_label_groups_with_name_groups.R | 44 saros.base-1.2.0/saros.base/tests/testthat/test-sanitize_chr_vec.R |only saros.base-1.2.0/saros.base/tests/testthat/test-setup_access_restrictions.R | 354 +++++ saros.base-1.2.0/saros.base/tests/testthat/test-setup_mesos.R | 256 +++ saros.base-1.2.0/saros.base/tests/testthat/test-setup_mesos_structure.R |only saros.base-1.2.0/saros.base/tests/testthat/test-utils.R | 126 + saros.base-1.2.0/saros.base/tests/testthat/test-validate_access_folder_paths.R |only 89 files changed, 5301 insertions(+), 1941 deletions(-)
Title: Designing Cluster-Randomized Trials with Two Continuous
Co-Primary Outcomes
Description: Provides methods for powering cluster-randomized trials with two continuous co-primary outcomes using five key design techniques. Includes functions for calculating required sample size and statistical power. For more details on methodology, see Owen et al. (2025) <doi:10.1002/sim.70015>, Yang et al. (2022) <doi:10.1111/biom.13692>, Pocock et al. (1987) <doi:10.2307/2531989>, Vickerstaff et al. (2019) <doi:10.1186/s12874-019-0754-4>, and Li et al. (2020) <doi:10.1111/biom.13212>.
Author: Melody Owen [aut, cre]
Maintainer: Melody Owen <melody.owen@yale.edu>
Diff between crt2power versions 1.2.1 dated 2025-05-07 and 1.2.2 dated 2025-11-12
DESCRIPTION | 6 ++-- MD5 | 16 +++++------ R/calc_pwr_comb_outcome.R | 27 +++++++++++++++++++ R/calc_pwr_conj_test.R | 31 ++++++++++++++++++++-- R/calc_pwr_disj_2dftest.R | 27 +++++++++++++++++++ R/calc_pwr_pval_adj.R | 27 +++++++++++++++++++ R/calc_pwr_single_1dftest.R | 27 +++++++++++++++++++ R/run_crt2_design.R | 10 +++++++ README.md | 61 +++++++++++++++++++++++--------------------- 9 files changed, 190 insertions(+), 42 deletions(-)
Title: PX-Web Data by API
Description: Function to read PX-Web data into R via API. The example code reads data from the three national statistical institutes, Statistics Norway, Statistics Sweden and Statistics Finland.
Author: Oeyvind Langsrud [aut, cre],
Jan Bruusgaard [aut],
Solveig Bjoerkholt [ctb],
Susie Jentoft [ctb]
Maintainer: Oeyvind Langsrud <oyl@ssb.no>
Diff between PxWebApiData versions 1.1.0 dated 2025-10-08 and 1.1.1 dated 2025-11-12
DESCRIPTION | 8 - MD5 | 22 ++-- NAMESPACE | 2 NEWS.md | 7 + R/ApiData.R | 19 ++- R/fromJSONstatExtra.R | 3 R/info.R |only inst/doc/Introduction.R | 28 +++-- inst/doc/Introduction.Rmd | 30 +++-- inst/doc/Introduction.html | 239 +++++++++++++++++++++++---------------------- man/ApiData.Rd | 21 ++- man/info.Rd |only vignettes/Introduction.Rmd | 30 +++-- 13 files changed, 234 insertions(+), 175 deletions(-)
Title: Tools to Manage a Parametric Function that Describes Phenology
and More
Description: Functions used to fit and test the phenology of species based on counts. Based on Girondot, M. (2010) <doi:10.3354/esr00292> for the phenology function, Girondot, M. (2017) <doi:10.1016/j.ecolind.2017.05.063> for the convolution of negative binomial, Girondot, M. and Rizzo, A. (2015) <doi:10.2993/etbi-35-02-337-353.1> for Bayesian estimate, Pfaller JB, ..., Girondot M (2019) <doi:10.1007/s00227-019-3545-x> for tag-loss estimate, Hancock J, ..., Girondot M (2019) <doi:10.1016/j.ecolmodel.2019.04.013> for nesting history, Laloe J-O, ..., Girondot M, Hays GC (2020) <doi:10.1007/s00227-020-03686-x> for aggregating several seasons.
Author: Marc Girondot [aut, cre]
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between phenology versions 10.3 dated 2025-06-17 and 2025.11.12 dated 2025-11-12
DESCRIPTION | 10 +-- MD5 | 18 ++--- NEWS | 10 ++- R/CI.RMU.R | 152 ++++++++++++++++++++++++++--------------------- R/add_phenology.R | 8 +- R/fit_phenology.R | 24 +++---- R/phenology-package.R | 4 - man/CI.RMU.Rd | 14 +++- man/figures/imgfile.png |binary man/phenology-package.Rd | 4 - 10 files changed, 142 insertions(+), 102 deletions(-)
Title: Comprehensive Data Summarization for Statistical Analysis
Description: Summarizes data frames by calculating various statistics including central tendency, dispersion, shape, and normality diagnostics. Handles numeric, character, and factor columns with NA-aware computations.
Author: Immad Ahmad Shah [aut],
Uzair Javid Khan [aut, cre],
Sukhdev Mishra [aut]
Maintainer: Uzair Javid Khan <uzairkhan11w@gmail.com>
Diff between DataSum versions 0.1.0 dated 2024-08-28 and 0.1.1 dated 2025-11-12
DESCRIPTION | 24 ++-- MD5 | 14 +- R/datasum.R | 205 ++++++++++++++++++++++++++---------------- man/DataSumm.Rd | 6 - man/Datum.Rd | 9 + man/getmode.Rd | 17 ++- man/shapiro_normality_test.Rd | 7 - tests |only 8 files changed, 173 insertions(+), 109 deletions(-)
Title: Pattern-Oriented Ensemble Modeling System
Description: A framework of interoperable R6 classes (Chang, 2020, <https://CRAN.R-project.org/package=R6>) for building ensembles of viable models via the pattern-oriented modeling (POM) approach (Grimm et al.,2005, <doi:10.1126/science.1116681>). The package includes classes for encapsulating and generating model parameters, and managing the POM workflow. The workflow includes: model setup; generating model parameters via Latin hyper-cube sampling (Iman & Conover, 1980, <doi:10.1080/03610928008827996>); running multiple sampled model simulations; collating summary results; and validating and selecting an ensemble of models that best match known patterns. By default, model validation and selection utilizes an approximate Bayesian computation (ABC) approach (Beaumont et al., 2002, <doi:10.1093/genetics/162.4.2025>), although alternative user-defined functionality could be employed. The package includes a spatially explicit demographic population model simulation engine, [...truncated...]
Author: Sean Haythorne [aut],
Damien Fordham [aut],
Stuart Brown [aut] ,
Jessie Buettel [aut],
Barry Brook [aut],
July Pilowsky [aut, cre]
Maintainer: July Pilowsky <pilowskyj@caryinstitute.org>
Diff between poems versions 1.3.3 dated 2025-05-07 and 1.4.0 dated 2025-11-12
poems-1.3.3/poems/inst/doc/thylacine_example.R |only poems-1.3.3/poems/inst/doc/translocation_example.R |only poems-1.4.0/poems/DESCRIPTION | 8 poems-1.4.0/poems/MD5 | 24 +- poems-1.4.0/poems/NAMESPACE | 2 poems-1.4.0/poems/NEWS.md | 4 poems-1.4.0/poems/R/Generator.R | 18 - poems-1.4.0/poems/build/partial.rdb |binary poems-1.4.0/poems/build/vignette.rds |binary poems-1.4.0/poems/inst/doc/translocation_example.pdf |binary poems-1.4.0/poems/man/Generator.Rd | 2 poems-1.4.0/poems/tests/testthat/test_generator.R | 130 +++++++++++ poems-1.4.0/poems/tests/testthat/test_inputs/Test_1_2.qs2 |only poems-1.4.0/poems/tests/testthat/test_inputs/Test_1_2_df.qs2 |only poems-1.4.0/poems/vignettes/simple_example.html | 88 +++---- 15 files changed, 206 insertions(+), 70 deletions(-)
Title: Nonparametric Methods for Measuring Efficiency and Productivity
Description: Efficiency and productivity indices are measured using this package. This package contains functions for measuring efficiency and productivity of decision making units (DMUs) under the framework of Data Envelopment Analysis (DEA) and its variations.
Author: Dong-hyun Oh [aut, cre],
Dukrok Suh [aut]
Maintainer: Dong-hyun Oh <oh.donghyun77@gmail.com>
Diff between nonparaeff versions 0.5-13 dated 2022-06-20 and 0.5-15 dated 2025-11-12
nonparaeff-0.5-13/nonparaeff/README.md |only nonparaeff-0.5-15/nonparaeff/DESCRIPTION | 19 +++++++++++++------ nonparaeff-0.5-15/nonparaeff/MD5 | 5 ++--- nonparaeff-0.5-15/nonparaeff/man/lp2.Rd | 5 +++-- 4 files changed, 18 insertions(+), 11 deletions(-)
Title: Automatically Create a 'Shiny' App Based on Interactive 'Loon'
Widgets
Description: Package 'shiny' provides interactive web applications in R. Package 'loon' is an interactive toolkit engaged in open-ended, creative and unscripted data exploration. The 'loon.shiny' package can take 'loon' widgets and display a selfsame 'shiny' app.
Author: Zehao Xu [aut, cre],
R. Wayne Oldford [aut]
Maintainer: Zehao Xu <z267xu@gmail.com>
Diff between loon.shiny versions 1.0.3 dated 2022-10-08 and 1.0.4 dated 2025-11-12
DESCRIPTION | 14 MD5 | 164 +- R/adjust_loon_grobs.R | 7 R/button_values.R | 11 R/get_brushId.R | 11 R/get_deactive_index.R | 285 +-- R/get_grobFromGtable.R | 41 R/get_itemLabel.R | 7 R/get_layers.R | 167 +- R/get_layoutMatrix.R | 69 R/get_loonInfo.R | 15 R/get_loonWidgetsInfo-l_graph.R | 1 R/get_loonWidgetsInfo-l_hist.R | 1 R/get_loonWidgetsInfo-l_plot.R | 1 R/get_loonWidgetsInfo-l_serialaxes.R | 1 R/get_loonWidgets_info.R | 9 R/get_output_info.R | 7 R/get_set_guides.R | 119 - R/get_set_labels.R | 283 +-- R/get_set_scales.R | 143 - R/get_set_viewPort.R | 77 R/get_update_linkingInfo.R | 24 R/loon.shiny.R | 45 R/loonGrob_name.R | 8 R/loonGrob_positions.R | 329 ++-- R/loonWidget_name.R | 12 R/loon_reactive_l_graph.R | 2229 ++++++++++++++-------------- R/loon_reactive_l_hist.R | 1394 ++++++++--------- R/loon_reactive_l_plot.R | 2772 +++++++++++++++++------------------ R/loon_reactive_l_serialaxes.R | 1632 ++++++++++---------- R/loon_sidebarPanel-l_graph.R | 1 R/loon_sidebarPanel-l_hist.R | 1 R/loon_sidebarPanel-l_plot.R | 1 R/loon_sidebarPanel-l_serialaxes.R | 1 R/loon_siderbarPanel.R | 59 R/loon_worldView.R | 7 R/move_grid_grob.R | 119 - R/move_halign_grob.R | 811 +++++----- R/move_hdist_grob.R | 827 +++++----- R/move_jitter_grob.R | 1088 ++++++------- R/move_layer_invisible_grob.R | 368 ++-- R/move_layer_visible_grob.R | 362 ++-- R/move_reset_grob.R | 541 +++--- R/move_valign_grob.R | 799 +++++----- R/move_vdist_grob.R | 823 +++++----- R/reorder_grob.R | 127 - R/set_alpha_grob.R | 6 R/set_boundary_grob.R | 55 R/set_color_grob.R | 570 +++---- R/set_deactive_grob.R | 403 ++--- R/set_glyph_grob.R | 255 +-- R/set_grobFromGtable.R | 8 R/set_linkingInfo-l_graph.R | 1 R/set_linkingInfo-l_hist.R | 1 R/set_linkingInfo-l_plot.R | 2 R/set_linkingInfo-l_serialaxes.R | 1 R/set_reactive_grob.R | 407 ++--- R/set_size_grob.R | 515 +++--- R/swapCoords_grob.R | 489 +++--- R/tagsDivGlyph.R | 3 R/tagsDivLayer.R | 3 R/tagsDivLink.R | 5 R/tagsDivModify-l_graph.R | 1 R/tagsDivModify-l_hist.R | 1 R/tagsDivModify-l_plot.R | 2 R/tagsDivModify-l_serialaxes.R | 1 R/tagsDivPlot-l_graph.R | 1 R/tagsDivPlot-l_hist.R | 1 R/tagsDivPlot-l_plot.R | 4 R/tagsDivPlot-l_serialaxes.R | 1 R/tagsDivSelect-l_serialaxes.R | 1 R/tagsDivSelect.R | 3 R/update_limitSliderInput.R | 9 R/update_sideBarPanel.R | 183 +- R/utils.R | 7 build/vignette.rds |binary inst/doc/introduction.R | 4 inst/doc/introduction.Rmd | 2 inst/doc/introduction.html | 234 +- man/loon.shiny-package.Rd | 3 man/loon.shiny.Rd | 45 man/shiny.loon-deprecated.Rd | 10 vignettes/introduction.Rmd | 2 83 files changed, 9583 insertions(+), 9469 deletions(-)
Title: The Hyperdirichlet Distribution, Mark 2
Description: A suite of routines for the hyperdirichlet distribution
and reified Bradley-Terry; supersedes the 'hyperdirichlet' package;
uses 'disordR' discipline <doi:10.48550/ARXIV.2210.03856>. To cite
in publications please use Hankin 2017 <doi:10.32614/rj-2017-061>,
and for Generalized Plackett-Luce likelihoods use Hankin 2024
<doi:10.18637/jss.v109.i08>.
Author: Robin K. S. Hankin [aut, cre]
Maintainer: Robin K. S. Hankin <hankin.robin@gmail.com>
Diff between hyper2 versions 3.1-0 dated 2024-05-31 and 3.2 dated 2025-11-12
hyper2-3.1-0/hyper2/inst/hyper3.Rmd |only hyper2-3.2/hyper2/DESCRIPTION | 16 - hyper2-3.2/hyper2/MD5 | 206 +++++++------- hyper2-3.2/hyper2/NAMESPACE | 33 +- hyper2-3.2/hyper2/NEWS.md | 4 hyper2-3.2/hyper2/R/hyper2.R | 257 +++++++---------- hyper2-3.2/hyper2/R/hyper3.R | 109 ++++++- hyper2-3.2/hyper2/R/profile.R | 2 hyper2-3.2/hyper2/R/psubs.R | 10 hyper2-3.2/hyper2/R/ranktable.R |only hyper2-3.2/hyper2/R/suppfun.R |only hyper2-3.2/hyper2/README.md | 2 hyper2-3.2/hyper2/build/partial.rdb |binary hyper2-3.2/hyper2/build/vignette.rds |binary hyper2-3.2/hyper2/data/NBA.rda |binary hyper2-3.2/hyper2/data/RCLF.rda |only hyper2-3.2/hyper2/data/T20.rda |binary hyper2-3.2/hyper2/data/baseball.rda |binary hyper2-3.2/hyper2/data/carcinoma.rda |binary hyper2-3.2/hyper2/data/chess.rda |binary hyper2-3.2/hyper2/data/constructor.rda |binary hyper2-3.2/hyper2/data/counterstrike.rda |binary hyper2-3.2/hyper2/data/curling.rda |binary hyper2-3.2/hyper2/data/eurodance.rda |binary hyper2-3.2/hyper2/data/eurovision.rda |binary hyper2-3.2/hyper2/data/formula1.rda |binary hyper2-3.2/hyper2/data/handover.rda |binary hyper2-3.2/hyper2/data/hepatitis.rda |binary hyper2-3.2/hyper2/data/icons.rda |binary hyper2-3.2/hyper2/data/interzonal.rda |binary hyper2-3.2/hyper2/data/javelin.rda |binary hyper2-3.2/hyper2/data/jester.rda |binary hyper2-3.2/hyper2/data/karate.rda |binary hyper2-3.2/hyper2/data/kka.rda |binary hyper2-3.2/hyper2/data/masterchef.rda |binary hyper2-3.2/hyper2/data/moto.rda |binary hyper2-3.2/hyper2/data/pentathlon.rda |binary hyper2-3.2/hyper2/data/powerboat.rda |binary hyper2-3.2/hyper2/data/rowing.rda |binary hyper2-3.2/hyper2/data/skating.rda |binary hyper2-3.2/hyper2/data/soling.rda |binary hyper2-3.2/hyper2/data/surfing.rda |binary hyper2-3.2/hyper2/data/sushi.rda |only hyper2-3.2/hyper2/data/table_tennis.rda |binary hyper2-3.2/hyper2/data/tennis.rda |binary hyper2-3.2/hyper2/data/universities.rda |binary hyper2-3.2/hyper2/data/volleyball.rda |binary hyper2-3.2/hyper2/data/volvo.rda |binary hyper2-3.2/hyper2/inst/cheering.Rmd |only hyper2-3.2/hyper2/inst/cloud9_boston_2018.txt |only hyper2-3.2/hyper2/inst/doc/hyper2.pdf |binary hyper2-3.2/hyper2/inst/doc/hyper3.R |only hyper2-3.2/hyper2/inst/doc/hyper3.Rmd |only hyper2-3.2/hyper2/inst/doc/hyper3.html |only hyper2-3.2/hyper2/inst/doc/hyper3_creation.R |only hyper2-3.2/hyper2/inst/doc/hyper3_creation.Rmd |only hyper2-3.2/hyper2/inst/doc/hyper3_creation.html |only hyper2-3.2/hyper2/inst/doc/icons.R | 34 +- hyper2-3.2/hyper2/inst/doc/icons.Rmd | 5 hyper2-3.2/hyper2/inst/doc/icons.html | 133 ++++----- hyper2-3.2/hyper2/inst/doc/integration.pdf |binary hyper2-3.2/hyper2/inst/doc/ordertrans.R | 42 +- hyper2-3.2/hyper2/inst/doc/ordertrans.Rmd | 5 hyper2-3.2/hyper2/inst/doc/ordertrans.html | 133 +++++---- hyper2-3.2/hyper2/inst/doc/zeropower.R | 17 - 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hyper2-3.2/hyper2/man/maxp.Rd | 5 hyper2-3.2/hyper2/man/ordertable.Rd | 16 - hyper2-3.2/hyper2/man/ordertable2points.Rd | 1 hyper2-3.2/hyper2/man/ordertable2supp.Rd | 19 - hyper2-3.2/hyper2/man/ordertrans.Rd | 4 hyper2-3.2/hyper2/man/pairwise.Rd | 30 +- hyper2-3.2/hyper2/man/ranktable.Rd | 18 - hyper2-3.2/hyper2/man/rhyper3.Rd | 12 hyper2-3.2/hyper2/man/rrace.Rd | 8 hyper2-3.2/hyper2/man/rrank.Rd | 41 +- hyper2-3.2/hyper2/man/skating.Rd | 2 hyper2-3.2/hyper2/man/suppfun.Rd |only hyper2-3.2/hyper2/man/sushi.Rd |only hyper2-3.2/hyper2/man/tests.Rd | 2 hyper2-3.2/hyper2/man/volleyball.Rd | 5 hyper2-3.2/hyper2/man/volvo.Rd | 3 hyper2-3.2/hyper2/man/zipf.Rd | 6 hyper2-3.2/hyper2/src/RcppExports.cpp | 114 +++---- hyper2-3.2/hyper2/src/hyperdirichlet2.cpp | 26 - hyper2-3.2/hyper2/src/hyperdirichlet3.cpp | 34 +- hyper2-3.2/hyper2/tests/testthat/test_dirichlet.R |only hyper2-3.2/hyper2/tests/testthat/test_hyper3.R | 1 hyper2-3.2/hyper2/vignettes/hyper2.bib | 320 +++++++++++++++++++++- hyper2-3.2/hyper2/vignettes/hyper3.Rmd |only hyper2-3.2/hyper2/vignettes/hyper3_creation.Rmd |only hyper2-3.2/hyper2/vignettes/icons.Rmd | 5 hyper2-3.2/hyper2/vignettes/ordertrans.Rmd | 5 hyper2-3.2/hyper2/vignettes/zeropower.Rmd | 12 117 files changed, 1255 insertions(+), 724 deletions(-)
Title: Explore the Innards of 'ggplot2' Objects
Description: Extensions to 'ggplot2' providing low-level debug tools: statistics
and geometries echoing their data argument. Layer manipulation: deletion,
insertion, extraction and reordering of layers. Deletion of unused variables
from the data object embedded in "ggplot" objects.
Author: Pedro J. Aphalo [aut, cre]
Maintainer: Pedro J. Aphalo <pedro.aphalo@helsinki.fi>
Diff between gginnards versions 0.2.0-1 dated 2024-11-13 and 0.2.0-2 dated 2025-11-12
DESCRIPTION | 17 MD5 | 50 - NEWS.md | 8 R/data-manip.R | 5 R/gg-structure.R | 9 R/gginnards.R | 2 R/layer-manip.R | 14 R/stat-debug.R | 4 README.md | 113 +-- build/vignette.rds |binary inst/doc/user-guide-1.R | 6 inst/doc/user-guide-1.Rmd | 38 - inst/doc/user-guide-1.html | 1124 +++++++++++++++++++++++++------ inst/doc/user-guide-2.R | 14 inst/doc/user-guide-2.Rmd | 24 inst/doc/user-guide-2.html | 154 ++-- man/delete_layers.Rd | 14 man/drop_vars.Rd | 5 man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-6-1.png |binary man/figures/README-unnamed-chunk-6-2.png |binary man/gginnards-package.Rd | 2 man/stat_debug_group.Rd | 4 man/str.Rd | 9 vignettes/user-guide-1.Rmd | 38 - vignettes/user-guide-2.Rmd | 24 26 files changed, 1269 insertions(+), 409 deletions(-)
Title: Using CF-Compliant Calendars with Climate Projection Data
Description: Support for all calendars as specified in the Climate and Forecast
(CF) Metadata Conventions for climate and forecasting data. The CF Metadata
Conventions is widely used for distributing files with climate observations
or projections, including the Coupled Model Intercomparison Project (CMIP)
data used by climate change scientists and the Intergovernmental Panel on
Climate Change (IPCC). This package specifically allows the user to work
with any of the CF-compliant calendars (many of which are not compliant with
POSIXt). The CF time coordinate is formally defined in the CF Metadata
Conventions document available at <https://cfconventions.org/Data/cf-conventions/cf-conventions-1.12/cf-conventions.html#time-coordinate>.
Author: Patrick Van Laake [aut, cre, cph]
Maintainer: Patrick Van Laake <patrick@vanlaake.net>
Diff between CFtime versions 1.7.1 dated 2025-10-01 and 1.7.2 dated 2025-11-12
CFtime-1.7.1/CFtime/R/deprecated.R |only CFtime-1.7.1/CFtime/man/deprecated_functions.Rd |only CFtime-1.7.2/CFtime/DESCRIPTION | 11 - CFtime-1.7.2/CFtime/MD5 | 25 +- CFtime-1.7.2/CFtime/NAMESPACE | 2 CFtime-1.7.2/CFtime/NEWS.md | 10 + CFtime-1.7.2/CFtime/R/CFCalendar.R | 156 +++++++++++----- CFtime-1.7.2/CFtime/R/CFtime.R | 50 +++-- CFtime-1.7.2/CFtime/R/zzz.R | 7 CFtime-1.7.2/CFtime/man/CFCalendar.Rd | 43 ++-- CFtime-1.7.2/CFtime/man/CFTime.Rd | 4 CFtime-1.7.2/CFtime/man/CFtime-package.Rd | 1 CFtime-1.7.2/CFtime/man/sub-.CFTime.Rd |only CFtime-1.7.2/CFtime/tests/testthat/test-CFClimatology.R | 4 CFtime-1.7.2/CFtime/tests/testthat/test-CFbounds.R | 8 15 files changed, 210 insertions(+), 111 deletions(-)
Title: Amos Tanay's Group High Performance Statistical Utilities
Description: A collection of high performance utilities to compute
distance, correlation, auto correlation, clustering and other tasks.
Contains graph clustering algorithm described in "MetaCell: analysis
of single-cell RNA-seq data using K-nn graph partitions" (Yael Baran,
Akhiad Bercovich, Arnau Sebe-Pedros, Yaniv Lubling, Amir Giladi, Elad
Chomsky, Zohar Meir, Michael Hoichman, Aviezer Lifshitz & Amos Tanay,
2019 <doi:10.1186/s13059-019-1812-2>).
Author: Michael Hoichman [aut],
Aviezer Lifshitz [aut, cre]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between tgstat versions 2.3.28 dated 2024-09-23 and 2.3.29 dated 2025-11-12
DESCRIPTION | 6 - MD5 | 8 - NEWS.md | 4 inst/doc/manual.html | 240 ++++++++++++++++++++++++++++++++++++++++++++++++--- src/tgstat.cpp | 6 - 5 files changed, 241 insertions(+), 23 deletions(-)
Title: Simulation, Visualization and Comparison of Tumor Evolution Data
Description: Simulating, visualizing and comparing tumor clonal data by using simple commands. This aims at providing a tool to help researchers to easily simulate tumor data and analyze the results of their approaches for studying the composition and the evolutionary history of tumors.
Author: Aitor Sanchez-Ferrera [cre, aut] ,
Maitena Tellaetxe-Abete [aut] ,
Borja Calvo [aut]
Maintainer: Aitor Sanchez-Ferrera <aitor.sanchezf@ehu.eus>
Diff between GeRnika versions 1.1.0 dated 2025-03-27 and 1.2.0 dated 2025-11-12
DESCRIPTION | 15 - MD5 | 22 - R/generate_instances.R | 9 R/phylotree_class.R | 4 R/tree.R | 8 inst/doc/models.R | 2 inst/doc/models.Rmd | 621 ++++++++++++++++++++++++------------------------- inst/doc/models.html | 10 inst/doc/usage.R | 24 - inst/doc/usage.html | 55 ++-- man/add_noise.Rd | 4 vignettes/models.Rmd | 621 ++++++++++++++++++++++++------------------------- 12 files changed, 701 insertions(+), 694 deletions(-)
Title: Geospatial Semantic Segmentation with Torch and Terra
Description: Provides tools for semantic segmentation of geospatial data using convolutional neural
network-based deep learning. Utility functions allow for creating masks, image chips, data frames listing image
chips in a directory, and DataSets for use within DataLoaders. Additional functions are provided to serve as checks
during the data preparation and training process. A UNet architecture can be defined with 4 blocks in the encoder, a
bottleneck block, and 4 blocks in the decoder. The UNet can accept a variable number of input channels, and the user
can define the number of feature maps produced in each encoder and decoder block and the bottleneck. Users can also
choose to (1) replace all rectified linear unit (ReLU) activation functions with leaky ReLU or swish, (2) implement attention gates along the
skip connections, (3) implement squeeze and excitation modules within the encoder blocks, (4) add residual connections
within all blocks, (5) replace the bottleneck with a modified atrous spati [...truncated...]
Author: Aaron Maxwell [aut, cre, cph],
Sarah Farhadpour [aut],
Srinjoy Das [aut],
Yalin Yang [aut]
Maintainer: Aaron Maxwell <Aaron.Maxwell@mail.wvu.edu>
Diff between geodl versions 0.2.0 dated 2024-08-20 and 0.3.0 dated 2025-11-12
geodl-0.2.0/geodl/R/makeTerrainDerivatives.R |only geodl-0.2.0/geodl/R/unetModels.R |only geodl-0.2.0/geodl/build |only geodl-0.2.0/geodl/inst |only geodl-0.2.0/geodl/man/makeTerrainDerivatives.Rd |only geodl-0.2.0/geodl/vignettes |only geodl-0.3.0/geodl/DESCRIPTION | 23 - geodl-0.3.0/geodl/MD5 | 185 ++++------------ geodl-0.3.0/geodl/NAMESPACE | 22 + geodl-0.3.0/geodl/NEWS.md | 22 + geodl-0.3.0/geodl/R/assessDL.R | 46 ++- geodl-0.3.0/geodl/R/assessPnts.R | 2 geodl-0.3.0/geodl/R/checkDynamicChips.R |only geodl-0.3.0/geodl/R/defineDynamicSegDataSet.R |only geodl-0.3.0/geodl/R/defineSegDataSet.R | 12 + geodl-0.3.0/geodl/R/globals.R | 2 geodl-0.3.0/geodl/R/luzMetrics.R | 136 +++++++---- geodl-0.3.0/geodl/R/makeChips.R | 30 +- geodl-0.3.0/geodl/R/makeChipsMultiClass.R | 14 + geodl-0.3.0/geodl/R/makeDynamicChipsSF.R |only geodl-0.3.0/geodl/R/makeLSPs.R |only geodl-0.3.0/geodl/R/makeMasks.R | 6 geodl-0.3.0/geodl/R/predictSpatial.R | 18 + geodl-0.3.0/geodl/R/saveDynamicChips.R |only geodl-0.3.0/geodl/R/segModels.R |only geodl-0.3.0/geodl/R/terrainSegModel.R |only geodl-0.3.0/geodl/R/unifiedFocalLoss.R | 26 +- geodl-0.3.0/geodl/R/utilities.R |only geodl-0.3.0/geodl/R/viewBatch.R | 29 ++ geodl-0.3.0/geodl/R/viewBatchPreds.R | 122 +++++++--- geodl-0.3.0/geodl/R/viewChips.R | 39 +++ geodl-0.3.0/geodl/README.md | 38 ++- geodl-0.3.0/geodl/man/assessDL.Rd | 27 +- geodl-0.3.0/geodl/man/assessPnts.Rd | 2 geodl-0.3.0/geodl/man/callback_save_model_state_dict.Rd |only geodl-0.3.0/geodl/man/checkDynamicChips.Rd |only geodl-0.3.0/geodl/man/countParams.Rd |only geodl-0.3.0/geodl/man/defineDynmamicSegDataSet.Rd |only geodl-0.3.0/geodl/man/defineMobileUNet.Rd | 52 ++-- geodl-0.3.0/geodl/man/defineSegDataSet.Rd | 5 geodl-0.3.0/geodl/man/defineTerrainSeg.Rd |only geodl-0.3.0/geodl/man/defineUNet.Rd | 55 ++-- geodl-0.3.0/geodl/man/defineUNet3p.Rd |only geodl-0.3.0/geodl/man/defineUnifiedFocalLoss.Rd | 15 + geodl-0.3.0/geodl/man/defineUnifiedFocalLossDS.Rd | 4 geodl-0.3.0/geodl/man/luz_metric_f1score.Rd | 8 geodl-0.3.0/geodl/man/luz_metric_overall_accuracy.Rd | 8 geodl-0.3.0/geodl/man/luz_metric_precision.Rd | 10 geodl-0.3.0/geodl/man/luz_metric_recall.Rd | 10 geodl-0.3.0/geodl/man/makeAspect.Rd |only geodl-0.3.0/geodl/man/makeCrv.Rd |only geodl-0.3.0/geodl/man/makeDynamicChipsSF.Rd |only geodl-0.3.0/geodl/man/makeHillshade.Rd |only geodl-0.3.0/geodl/man/makeSlope.Rd |only geodl-0.3.0/geodl/man/makeTPI.Rd |only geodl-0.3.0/geodl/man/makeTRI.Rd |only geodl-0.3.0/geodl/man/makeTerrainVisTerra.Rd |only geodl-0.3.0/geodl/man/makeTerrainVisTorch.Rd |only geodl-0.3.0/geodl/man/predictSpatial.Rd | 11 geodl-0.3.0/geodl/man/saveDynamicChips.Rd |only geodl-0.3.0/geodl/man/viewBatch.Rd | 18 + geodl-0.3.0/geodl/man/viewBatchPreds.Rd | 3 geodl-0.3.0/geodl/man/viewChips.Rd | 5 63 files changed, 650 insertions(+), 355 deletions(-)
Title: Cohort Generation for the OMOP Common Data Model
Description: Generate cohorts and subsets using an Observational
Medical Outcomes Partnership (OMOP) Common Data Model (CDM) Database.
Cohorts are defined using 'CIRCE' (<https://github.com/ohdsi/circe-be>) or
SQL compatible with 'SqlRender' (<https://github.com/OHDSI/SqlRender>).
Author: Anthony Sena [aut, cre],
Jamie Gilbert [aut],
Gowtham Rao [aut],
Freddy Avila Cruz [aut],
Martijn Schuemie [aut],
Observational Health Data Science and Informatics [cph]
Maintainer: Anthony Sena <sena@ohdsi.org>
Diff between CohortGenerator versions 0.12.2 dated 2025-09-11 and 1.0.0 dated 2025-11-12
CohortGenerator-0.12.2/CohortGenerator/man/getRequiredTasks.Rd |only CohortGenerator-0.12.2/CohortGenerator/man/isTaskRequired.Rd |only CohortGenerator-0.12.2/CohortGenerator/man/recordTasksDone.Rd |only CohortGenerator-0.12.2/CohortGenerator/man/saveIncremental.Rd |only CohortGenerator-0.12.2/CohortGenerator/tests/testthat/test-Incremental.R |only CohortGenerator-1.0.0/CohortGenerator/DESCRIPTION | 20 CohortGenerator-1.0.0/CohortGenerator/MD5 | 179 ++-- CohortGenerator-1.0.0/CohortGenerator/NAMESPACE | 25 CohortGenerator-1.0.0/CohortGenerator/NEWS.md | 21 CohortGenerator-1.0.0/CohortGenerator/R/CohortConstruction.R | 413 ++++++---- CohortGenerator-1.0.0/CohortGenerator/R/CohortDefinitionSet.R | 20 CohortGenerator-1.0.0/CohortGenerator/R/CohortSample.R | 74 + CohortGenerator-1.0.0/CohortGenerator/R/CohortTables.R | 9 CohortGenerator-1.0.0/CohortGenerator/R/Export.R | 141 ++- CohortGenerator-1.0.0/CohortGenerator/R/Incremental.R | 181 ---- CohortGenerator-1.0.0/CohortGenerator/R/NegativeControlCohorts.R | 108 +- CohortGenerator-1.0.0/CohortGenerator/R/ResultsDataModel.R | 6 CohortGenerator-1.0.0/CohortGenerator/R/RunCohortGeneration.R | 60 - CohortGenerator-1.0.0/CohortGenerator/R/SubsetDefinitions.R | 48 - CohortGenerator-1.0.0/CohortGenerator/R/SubsetQueryBuilders.R | 26 CohortGenerator-1.0.0/CohortGenerator/R/SubsetRecipeFunctions.R |only CohortGenerator-1.0.0/CohortGenerator/R/Subsets.R | 113 ++ CohortGenerator-1.0.0/CohortGenerator/R/TemplateCohorts.R |only CohortGenerator-1.0.0/CohortGenerator/R/TemplateImplementations.R |only CohortGenerator-1.0.0/CohortGenerator/R/TemplateUnion.R |only CohortGenerator-1.0.0/CohortGenerator/R/ValidateCohort.R |only CohortGenerator-1.0.0/CohortGenerator/README.md | 9 CohortGenerator-1.0.0/CohortGenerator/build/vignette.rds |binary CohortGenerator-1.0.0/CohortGenerator/inst/csv/resultsDataModelSpecification.csv | 11 CohortGenerator-1.0.0/CohortGenerator/inst/doc/CreatingCohortSubsetDefinitions.R | 6 CohortGenerator-1.0.0/CohortGenerator/inst/doc/CreatingCohortSubsetDefinitions.Rmd | 9 CohortGenerator-1.0.0/CohortGenerator/inst/doc/CreatingCohortSubsetDefinitions.html | 12 CohortGenerator-1.0.0/CohortGenerator/inst/doc/GeneratingCohorts.R | 6 CohortGenerator-1.0.0/CohortGenerator/inst/doc/GeneratingCohorts.Rmd | 15 CohortGenerator-1.0.0/CohortGenerator/inst/doc/GeneratingCohorts.pdf |binary CohortGenerator-1.0.0/CohortGenerator/inst/doc/SamplingCohorts.R | 9 CohortGenerator-1.0.0/CohortGenerator/inst/doc/SamplingCohorts.Rmd | 9 CohortGenerator-1.0.0/CohortGenerator/inst/doc/SamplingCohorts.pdf |binary CohortGenerator-1.0.0/CohortGenerator/inst/doc/UsingTemplateCohorts.R |only CohortGenerator-1.0.0/CohortGenerator/inst/doc/UsingTemplateCohorts.Rmd |only CohortGenerator-1.0.0/CohortGenerator/inst/doc/UsingTemplateCohorts.html |only CohortGenerator-1.0.0/CohortGenerator/inst/sql/sql_server/CreateCohortTables.sql | 15 CohortGenerator-1.0.0/CohortGenerator/inst/sql/sql_server/ValidateCohorts.sql |only CohortGenerator-1.0.0/CohortGenerator/inst/sql/sql_server/migrations/Migration_2-v0.12.0.sql | 4 CohortGenerator-1.0.0/CohortGenerator/inst/sql/sql_server/migrations/Migration_3-v1.0.0.sql |only CohortGenerator-1.0.0/CohortGenerator/inst/sql/sql_server/subsets/LimitSubsetOperator.sql | 3 CohortGenerator-1.0.0/CohortGenerator/inst/sql/sql_server/templates |only CohortGenerator-1.0.0/CohortGenerator/inst/testdata/Results_Eunomia.zip |binary CohortGenerator-1.0.0/CohortGenerator/inst/testdata/negativecontrols/negativeControlOutcomes.csv | 18 CohortGenerator-1.0.0/CohortGenerator/man/CohortSubsetDefinition.Rd | 18 CohortGenerator-1.0.0/CohortGenerator/man/CohortSubsetOperator.Rd | 3 CohortGenerator-1.0.0/CohortGenerator/man/CohortTemplateDefinition.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/DemographicSubsetOperator.Rd | 1 CohortGenerator-1.0.0/CohortGenerator/man/LimitSubsetOperator.Rd | 3 CohortGenerator-1.0.0/CohortGenerator/man/SubsetOperator.Rd | 18 CohortGenerator-1.0.0/CohortGenerator/man/addCohortTemplateDefintion.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/addExcludeOnIndexSubsetDefinition.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/addIndicationSubsetDefinition.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/addRestrictionSubsetDefinition.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/addSqlCohortDefinition.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/addUnionCohortDefinition.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/computeChecksum.Rd | 1 CohortGenerator-1.0.0/CohortGenerator/man/createAtcCohortTemplateDefinition.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/createCohortSubset.Rd | 36 CohortGenerator-1.0.0/CohortGenerator/man/createCohortSubsetDefinition.Rd | 10 CohortGenerator-1.0.0/CohortGenerator/man/createCohortSubsetOperator.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/createCohortTemplateDefintion.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/createDemographicSubset.Rd | 29 CohortGenerator-1.0.0/CohortGenerator/man/createDemographicSubsetOperator.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/createLimitSubset.Rd | 38 CohortGenerator-1.0.0/CohortGenerator/man/createLimitSubsetOperator.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/createRxNormCohortTemplateDefinition.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/createSnomedCohortTemplateDefinition.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/createUnionCohortTemplate.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/exportCohortStatsTables.Rd | 2 CohortGenerator-1.0.0/CohortGenerator/man/generateCohortSet.Rd | 2 CohortGenerator-1.0.0/CohortGenerator/man/generateNegativeControlOutcomeCohorts.Rd | 8 CohortGenerator-1.0.0/CohortGenerator/man/getCohortDefinitionSet.Rd | 4 CohortGenerator-1.0.0/CohortGenerator/man/getCohortTableNames.Rd | 5 CohortGenerator-1.0.0/CohortGenerator/man/getCohortValidationCounts.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/getDataMigrator.Rd | 2 CohortGenerator-1.0.0/CohortGenerator/man/getExcludeOnIndexSubsetDefinitionIds.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/getIndicationSubsetDefinitionIds.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/getLastGeneratedCohortChecksums.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/getRestrictionSubsetDefinitionIds.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/getTemplateDefinitions.Rd |only CohortGenerator-1.0.0/CohortGenerator/man/migrateDataModel.Rd | 2 CohortGenerator-1.0.0/CohortGenerator/man/runCohortGeneration.Rd | 2 CohortGenerator-1.0.0/CohortGenerator/man/sampleCohortDefinitionSet.Rd | 2 CohortGenerator-1.0.0/CohortGenerator/man/saveCohortDefinitionSet.Rd | 4 CohortGenerator-1.0.0/CohortGenerator/tests/testthat/errorReportSql.txt |only CohortGenerator-1.0.0/CohortGenerator/tests/testthat/setup.R | 2 CohortGenerator-1.0.0/CohortGenerator/tests/testthat/test-ChecksumTable.R |only CohortGenerator-1.0.0/CohortGenerator/tests/testthat/test-CohortConstructionAndStats.R | 45 - CohortGenerator-1.0.0/CohortGenerator/tests/testthat/test-CohortSample.R | 41 CohortGenerator-1.0.0/CohortGenerator/tests/testthat/test-CohortTables.R | 9 CohortGenerator-1.0.0/CohortGenerator/tests/testthat/test-Export.R | 29 CohortGenerator-1.0.0/CohortGenerator/tests/testthat/test-NegativeControlCohorts.R | 24 CohortGenerator-1.0.0/CohortGenerator/tests/testthat/test-ResultsDataModel.R | 157 ++- CohortGenerator-1.0.0/CohortGenerator/tests/testthat/test-SubsetOperations.R | 30 CohortGenerator-1.0.0/CohortGenerator/tests/testthat/test-SubsetRecipies.R |only CohortGenerator-1.0.0/CohortGenerator/tests/testthat/test-Subsets.R | 100 +- CohortGenerator-1.0.0/CohortGenerator/tests/testthat/test-TemplateCohorts.R |only CohortGenerator-1.0.0/CohortGenerator/tests/testthat/test-TemplateImplementations.R |only CohortGenerator-1.0.0/CohortGenerator/tests/testthat/test-ValidateCohorts.R |only CohortGenerator-1.0.0/CohortGenerator/tests/testthat/test-dbms-platforms.R | 6 CohortGenerator-1.0.0/CohortGenerator/vignettes/CreatingCohortSubsetDefinitions.Rmd | 9 CohortGenerator-1.0.0/CohortGenerator/vignettes/GeneratingCohorts.Rmd | 15 CohortGenerator-1.0.0/CohortGenerator/vignettes/SamplingCohorts.Rmd | 9 CohortGenerator-1.0.0/CohortGenerator/vignettes/UsingTemplateCohorts.Rmd |only 110 files changed, 1277 insertions(+), 959 deletions(-)
More information about CohortGenerator at CRAN
Permanent link
Title: Steve's Toy Data for Teaching About a Variety of Methodological,
Social, and Political Topics
Description: This is a collection of various kinds of data with broad uses for teaching.
My students, and academics like me who teach the same topics I teach, should find
this useful if their teaching workflow is also built around the R programming
language. The applications are multiple but mostly cluster on topics of statistical
methodology, international relations, and political economy.
Author: Steve Miller [aut, cre]
Maintainer: Steve Miller <steve@svmiller.com>
Diff between stevedata versions 1.7.0 dated 2025-09-17 and 1.8.0 dated 2025-11-12
DESCRIPTION | 6 +++--- MD5 | 23 +++++++++++++---------- NEWS.md | 11 +++++++++++ R/rd-AJR5.R | 3 +-- R/rd-coffee_imports.R | 30 ++++++++++++++++++++++++------ R/rd-epl_odds.R | 2 +- R/rd-postcol_growth.R |only build/partial.rdb |binary data/coffee_imports.rda |binary data/postcol_growth.rda |only man/AJR5.Rd | 3 +-- man/coffee_imports.Rd | 28 ++++++++++++++++++++++------ man/epl_odds.Rd | 4 +--- man/postcol_growth.Rd |only 14 files changed, 77 insertions(+), 33 deletions(-)
Title: Access to Spanish Meteorological Stations Services
Description: Access to different Spanish meteorological stations data services and APIs (AEMET, SMC, MG,
Meteoclimatic...).
Author: Victor Granda [aut, cre] ,
Miquel de Caceres [ctb] ,
Aitor Ameztegui [ctb] ,
Luis Franco [ctb],
Ruben Fernandez-Casal [ctb]
Maintainer: Victor Granda <victorgrandagarcia@gmail.com>
Diff between meteospain versions 0.2.2 dated 2025-10-01 and 0.3.0 dated 2025-11-12
DESCRIPTION | 16 MD5 | 58 +- NEWS.md | 12 R/aemet_helpers.R | 403 +++++------------- R/get_data.R | 8 R/meteocat_helpers.R | 482 +++++++++------------- R/meteoclimatic_helpers.R | 70 ++- R/meteogalicia_helpers.R | 205 ++++----- R/ria_helpers.R | 250 ++++------- R/services_options.R | 8 R/utils.R | 135 ------ build/vignette.rds |binary inst/doc/aemet.Rmd | 2 inst/doc/aemet.html | 68 +-- inst/doc/api_limits.html | 890 ++++++++++++++++++++++------------------- inst/doc/compatibility.Rmd | 1 inst/doc/compatibility.html | 166 ++++--- inst/doc/meteocat.html | 10 inst/doc/meteoclimatic.html | 44 +- inst/doc/meteogalicia.html | 20 inst/doc/ria.html | 174 +++----- man/get_meteo_from.Rd | 2 man/get_quota_from.Rd | 2 man/get_stations_info_from.Rd | 2 man/services_options.Rd | 8 tests/testthat/test-aemet.R | 7 tests/testthat/test-meteocat.R | 10 tests/testthat/test-riaa.R | 8 vignettes/aemet.Rmd | 2 vignettes/compatibility.Rmd | 1 30 files changed, 1419 insertions(+), 1645 deletions(-)
Title: 'shiny' Application for Statistical Test Assumption Checking and
Guidance
Description: A 'shiny' application to assess statistical assumptions and guide users toward appropriate tests. The app is designed for researchers with minimal statistical training and provides diagnostics, plots, and test recommendations for a wide range of analyses. Many statistical assumptions are implemented using the package 'rstatix' (Kassambara, 2019) <doi:10.32614/CRAN.package.rstatix> and 'performance' (Lüdecke et al., 2021) <doi:10.21105/joss.03139>.
Author: Ahmed Bargheet [aut, cre]
Maintainer: Ahmed Bargheet <ahmed.bargheet@yahoo.com>
Diff between AssumpSure versions 1.1.2 dated 2025-10-19 and 1.1.3 dated 2025-11-12
AssumpSure-1.1.2/AssumpSure/inst/extdata/One-way_ANOVA.csv |only AssumpSure-1.1.2/AssumpSure/inst/extdata/starwar.csv |only AssumpSure-1.1.2/AssumpSure/inst/extdata/t-test_1.csv |only AssumpSure-1.1.3/AssumpSure/DESCRIPTION | 26 AssumpSure-1.1.3/AssumpSure/MD5 | 49 - AssumpSure-1.1.3/AssumpSure/NAMESPACE | 9 AssumpSure-1.1.3/AssumpSure/NEWS.md | 8 AssumpSure-1.1.3/AssumpSure/R/bacteria_for_correlation.R |only AssumpSure-1.1.3/AssumpSure/R/chi_fisher.R |only AssumpSure-1.1.3/AssumpSure/R/correlation.R |only AssumpSure-1.1.3/AssumpSure/R/infants.R |only AssumpSure-1.1.3/AssumpSure/R/launch_app.R | 2 AssumpSure-1.1.3/AssumpSure/R/plantgrowth.R |only AssumpSure-1.1.3/AssumpSure/R/stat_tests.R |only AssumpSure-1.1.3/AssumpSure/R/t-test.R |only AssumpSure-1.1.3/AssumpSure/R/zzz.R | 2 AssumpSure-1.1.3/AssumpSure/inst/CITATION |only AssumpSure-1.1.3/AssumpSure/inst/app/app.R | 313 ++++--- AssumpSure-1.1.3/AssumpSure/inst/app/www/infants.csv |only AssumpSure-1.1.3/AssumpSure/inst/extdata/infants.csv | 500 ++++++------ AssumpSure-1.1.3/AssumpSure/inst/extdata/plantgrowth.csv |only AssumpSure-1.1.3/AssumpSure/inst/extdata/t-test.csv | 100 ++ AssumpSure-1.1.3/AssumpSure/man/bacteria_for_correlation.Rd |only AssumpSure-1.1.3/AssumpSure/man/chi_fisher.Rd |only AssumpSure-1.1.3/AssumpSure/man/correlation.Rd |only AssumpSure-1.1.3/AssumpSure/man/infants.Rd |only AssumpSure-1.1.3/AssumpSure/man/plantgrowth.Rd |only AssumpSure-1.1.3/AssumpSure/man/t-test.Rd |only AssumpSure-1.1.3/AssumpSure/tests |only 29 files changed, 601 insertions(+), 408 deletions(-)
Title: Genotype by Environment (GxE) Analysis
Description: Analysis of multi environment data of plant breeding experiments
following the analyses described in Malosetti, Ribaut,
and van Eeuwijk (2013), <doi:10.3389/fphys.2013.00044>.
One of a series of statistical genetic packages for streamlining the analysis of
typical plant breeding experiments developed by Biometris.
Some functions have been created to be used in conjunction with the R
package 'asreml' for the 'ASReml' software, which can be obtained upon
purchase from 'VSN' international (<https://vsni.co.uk/software/asreml-r/>).
Author: Bart-Jan van Rossum [aut, cre] ,
Fred van Eeuwijk [ctb] ,
Martin Boer [ctb] ,
Marcos Malosetti [ctb] ,
Daniela Bustos-Korts [ctb] ,
Emilie J Millet [ctb] ,
Joao Paulo [ctb] ,
Maikel Verouden [ctb] ,
Willem Kruijer [ctb] ,
Ron Wehrens [ctb] ,
Choazhi [...truncated...]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum@wur.nl>
Diff between statgenGxE versions 1.0.10 dated 2025-06-24 and 1.0.11 dated 2025-11-12
DESCRIPTION | 33 ++++++++++++------ MD5 | 24 ++++++------- NEWS.md | 4 ++ R/createVarComp.R | 68 +++++++++++++++++++++++++++++++++------ R/gxeVarComp.R | 1 README.md | 2 - build/partial.rdb |binary build/vignette.rds |binary inst/doc/statgenGxE.html | 35 ++++++++++---------- man/herit.Rd | 21 ++++++++---- man/statgenGxE-package.Rd | 6 ++- tests/testthat/Rplots.pdf |binary tests/testthat/test-gxeVarComp.R | 36 ++++++++++---------- 13 files changed, 154 insertions(+), 76 deletions(-)
Title: Makefile Generator for R Analytical Projects
Description: Creates and maintains a build process for complex analytic tasks in R.
Package allows to easily generate Makefile for the (GNU) 'make' tool, which drives the build process
by (in parallel) executing build commands in order to update results accordingly to given dependencies
on changed data or updated source files.
Author: Michal Burda [aut, cre]
Maintainer: Michal Burda <michal.burda@osu.cz>
Diff between rmake versions 1.2.0 dated 2025-08-26 and 1.2.1 dated 2025-11-12
DESCRIPTION | 12 - MD5 | 101 +++++++-------- NAMESPACE | 2 NEWS.md | 9 - R/copyRule.R | 12 - R/depRule.R | 8 - R/expandTemplate.R | 20 +-- R/getParam.R | 10 - R/getters.R | 6 R/inShell.R | 20 +-- R/is.rule.R | 6 R/knitrRule.R | 20 +-- R/make.R | 16 +- R/makefile.R | 48 +++---- R/markdownRule.R | 20 +-- R/offlineRule.R | 14 +- R/pipe.R | 2 R/rRule.R | 22 +-- R/replaceSuffix.R | 6 R/replaceVariables.R | 4 R/rmake.R | 24 +-- R/rmakeSkeleton.R | 2 R/rule.R | 28 ++-- R/subdirRule.R | 12 - inst/doc/rmake-intro.Rnw | 166 ++++++++++++------------- inst/doc/rmake-intro.pdf |binary man/copyRule.Rd | 12 - man/defaultVars.Rd | 6 man/depRule.Rd | 8 - man/expandTemplate.Rd | 20 +-- man/getParam.Rd | 10 - man/grapes-greater-than-greater-than-grapes.Rd | 2 man/inShell.Rd | 8 - man/is.rule.Rd | 6 man/knitrRule.Rd | 20 +-- man/make.Rd | 19 +- man/makefile.Rd | 42 +++--- man/markdownRule.Rd | 20 +-- man/offlineRule.Rd | 14 +- man/prerequisites.Rd | 2 man/rRule.Rd | 22 +-- man/replaceSuffix.Rd | 6 man/replaceVariables.Rd | 4 man/rmake-package.Rd | 24 +-- man/rmakeSkeleton.Rd | 2 man/rule.Rd | 28 ++-- man/subdirRule.Rd | 12 - tests/testthat/test-inShell.R |only tests/testthat/test-run-simple.R | 15 +- tests/testthat/test-run-subdir.R | 8 - tests/testthat/test-run-tasks.R | 10 - vignettes/rmake-intro.Rnw | 166 ++++++++++++------------- 52 files changed, 544 insertions(+), 532 deletions(-)
Title: Create Compact Hash Digests of R Objects
Description: Implementation of a function 'digest()' for the creation of hash
digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32',
'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128'
algorithms) permitting easy comparison of R language objects, as well as functions
such as 'hmac()' to create hash-based message authentication code. Please note that
this package is not meant to be deployed for cryptographic purposes for which more
comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.
Author: Dirk Eddelbuettel [aut, cre] ,
Antoine Lucas [ctb] ,
Jarek Tuszynski [ctb],
Henrik Bengtsson [ctb] ,
Simon Urbanek [ctb] ,
Mario Frasca [ctb],
Bryan Lewis [ctb],
Murray Stokely [ctb],
Hannes Muehleisen [ctb] ,
Duncan Murdoch [ctb],
Jim Hester [ctb] , [...truncated...]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between digest versions 0.6.37 dated 2024-08-19 and 0.6.38 dated 2025-11-12
ChangeLog | 146 +++++++++++++++ DESCRIPTION | 97 +++++----- MD5 | 51 ++--- NAMESPACE | 2 R/digest.R | 19 + R/sha1.R | 18 - R/vdigest.R | 6 README.md | 8 build/vignette.rds |binary inst/CITATION |only inst/doc/sha1.html | 4 inst/doc/sha1.md | 2 inst/tinytest/test_digest.R | 11 + inst/tinytest/test_raw.R | 14 + inst/tinytest/test_sha1.R | 21 ++ man/digest.Rd | 14 - man/hmac.Rd | 15 - man/sha1.Rd | 19 + src/blake3.c | 154 ++++++++++----- src/blake3.h | 65 ++++-- src/blake3_dispatch.c | 341 +++++++++++++++++++++-------------- src/blake3_impl.h | 105 +++++++++- src/blake3_portability.h |only src/blake3_portable.c | 8 src/digest.c | 424 ++++++++++++++++++++++++-------------------- src/digest.h |only src/init.c | 1 vignettes/sha1.md | 2 28 files changed, 1006 insertions(+), 541 deletions(-)
Title: Transfer Graph Learning
Description: Transfer learning, aiming to use auxiliary domains to help improve learning of the target domain of interest when multiple heterogeneous datasets are available, has been a hot topic in statistical machine learning. The recent transfer learning methods with statistical guarantees mainly focus on the overall parameter transfer for supervised models in the ideal case with the informative auxiliary domains with overall similarity. In contrast, transfer learning for unsupervised graph learning is in its infancy and largely follows the idea of overall parameter transfer as for supervised learning.
In this package, the transfer learning for several complex graphical models is implemented, including Tensor Gaussian graphical models, non-Gaussian directed acyclic graph (DAG), and Gaussian graphical mixture models. Notably, this package promotes local transfer at node-level and subgroup-level in DAG structural learning and Gaussian graphical mixture models, respectively, which are more flexible [...truncated...]
Author: Mingyang Ren [aut, cre] ,
Ruixuan Zhao [aut],
Xin He [aut],
Junhui Wang [aut]
Maintainer: Mingyang Ren <renmingyang17@mails.ucas.ac.cn>
Diff between TransGraph versions 1.0.0 dated 2023-10-19 and 1.1.0 dated 2025-11-12
TransGraph-1.0.0/TransGraph/R/support_functions_TensorGGM.R |only TransGraph-1.0.0/TransGraph/R/tensor.GGM.trans.R |only TransGraph-1.0.0/TransGraph/build |only TransGraph-1.0.0/TransGraph/inst |only TransGraph-1.0.0/TransGraph/man/tensor.GGM.trans.Rd |only TransGraph-1.0.0/TransGraph/vignettes |only TransGraph-1.1.0/TransGraph/DESCRIPTION | 26 +- TransGraph-1.1.0/TransGraph/MD5 | 34 +-- TransGraph-1.1.0/TransGraph/NAMESPACE | 5 TransGraph-1.1.0/TransGraph/R/TLLiNGAM.R | 2 TransGraph-1.1.0/TransGraph/R/Theta.tuning.R | 2 TransGraph-1.1.0/TransGraph/R/support_functions_GGM.R | 65 ++++- TransGraph-1.1.0/TransGraph/R/support_functions_GGMM.R | 56 ++++- TransGraph-1.1.0/TransGraph/R/trans.local.DAG.R | 22 - TransGraph-1.1.0/TransGraph/R/trans_GGMM.R | 16 + TransGraph-1.1.0/TransGraph/R/trans_precision.R | 133 +++--------- TransGraph-1.1.0/TransGraph/man/TLLiNGAM.Rd | 5 TransGraph-1.1.0/TransGraph/man/trans.local.DAG.Rd | 25 -- TransGraph-1.1.0/TransGraph/man/trans_precision.Rd | 38 --- 19 files changed, 183 insertions(+), 246 deletions(-)
Title: Estimating Hidden Population Size using Respondent Driven
Sampling Data
Description: Estimate the size of a networked population based on
respondent-driven sampling data. The package is part of the "RDS Analyst"
suite of packages for the analysis of respondent-driven sampling data.
See Handcock, Gile and Mar (2014) <doi:10.1214/14-EJS923>,
Handcock, Gile and Mar (2015) <doi:10.1111/biom.12255>,
Kim and Handcock (2021) <doi:10.1093/jssam/smz055>, and
McLaughlin, et. al. (2023) <doi:10.1214/23-AOAS1807>.
Author: Mark S. Handcock [aut, cre, cph] ,
Krista J. Gile [aut, cph],
Brian Kim [ctb],
Katherine R. McLaughlin [ctb]
Maintainer: Mark S. Handcock <handcock@stat.ucla.edu>
Diff between sspse versions 1.1.0-4 dated 2025-11-06 and 1.1.0-6 dated 2025-11-12
DESCRIPTION | 8 MD5 | 22 - R/plot.sspse.R | 3 R/poscmp.R | 10 R/poscmpwp.R | 663 +++++++++++++++++++++++------------------------ R/posteriorsize.R | 166 ++++++----- src/posteriorcmp2.c | 171 ++++++------ src/posteriorcmp2.h | 8 src/posteriorcmpwpvis.c | 87 +++--- src/posteriorcmpwpvis.h | 6 src/posteriorcmpwpvis2.c | 365 +++++++++++++++---------- src/posteriorcmpwpvis2.h | 10 12 files changed, 802 insertions(+), 717 deletions(-)
Title: In-Text Resize for Images, Tables and Fancy Resize Containers in
'shiny', 'rmarkdown' and 'quarto' Documents
Description: Offers a suite of tools designed to enhance the responsiveness and interactivity of web-based documents and applications created with R. It provides an automatic, configurable resizing toolbar that can be seamlessly integrated with HTML elements such as containers, images, and tables, allowing end-users to dynamically adjust their dimensions. Beyond the toolbar, the package includes a rich collection of flexible, expandable, and interactive container functionalities, such as highly customizable split-screen layouts (splitCard), versatile sizeable cards (sizeableCard), dynamic window-like elements (windowCard), visually engaging emphasis cards (empahsisCard), and sophisticated flexible and elastic card layouts (flexCard, elastiCard). Furthermore, it offers an elegant image viewer and resizer (shinyExpandImage) perfect for interactive galleries. r2resize is particularly well-suited for developers and data scientists looking to create modern, responsive, and user-friendly 'shiny' applicat [...truncated...]
Author: Obinna Obianom [aut, cre]
Maintainer: Obinna Obianom <idonshayo@gmail.com>
Diff between r2resize versions 1.9.2 dated 2024-11-25 and 2.0 dated 2025-11-12
DESCRIPTION | 11 MD5 | 126 NEWS.md | 116 R/addJquery.R | 54 R/containerResizer.R | 489 +-- R/markdownResizer.R | 172 - R/novoImageResizer.R | 134 R/r2resize-package.R | 7 R/sliderCards.R | 279 + README.md | 312 - build/vignette.rds |binary inst/doc/example_frequently_asked_r2resize.R | 24 inst/doc/example_frequently_asked_r2resize.Rmd | 476 +- inst/doc/example_frequently_asked_r2resize.html | 318 - inst/doc/introduction_r2resize.Rmd | 120 inst/doc/introduction_r2resize.html | 32 inst/doc/r2resize-flexible-elastic-cards.R |only inst/doc/r2resize-flexible-elastic-cards.Rmd |only inst/doc/r2resize-flexible-elastic-cards.html |only inst/doc/r2resize-image-and-markdown-resizing.R |only inst/doc/r2resize-image-and-markdown-resizing.Rmd |only inst/doc/r2resize-image-and-markdown-resizing.html |only inst/doc/r2resize-resizable-containers.R |only inst/doc/r2resize-resizable-containers.Rmd |only inst/doc/r2resize-resizable-containers.html |only inst/doc/resizable_containers_split_screen_r2resize.Rmd | 162 - inst/doc/resizable_containers_split_screen_r2resize.html | 44 inst/doc/split_card_html_r2resize.Rmd | 174 - inst/doc/split_card_html_r2resize.html | 86 inst/examples/sample1.Rmd | 336 +- inst/themes/default.css | 2 inst/themes/default_bottom.js | 2 inst/themes/default_top.js | 2 inst/themes/divsplitter.js | 2 inst/themes/empahsisCard.css | 2 inst/themes/expandingAccordian.css | 4 inst/themes/expandingAccordian.js | 6 inst/themes/imgviewer.css | 2 inst/themes/imgviewer.js | 2411 ++++++++++++++- inst/themes/rezcontCard.css | 2 inst/themes/rezcontCard.js | 2 inst/themes/splitCard.css | 2 inst/themes/splitCard2.css | 2 inst/themes/splitCard2.js | 2 inst/themes/windowCard.css | 2 inst/themes/windowCard.js | 2 man/add.JQuery.Rd | 51 man/add.resizer.Rd | 169 - man/elastiCard.Rd | 140 man/empahsisCard.Rd | 72 man/emphasisCard.Rd | 71 man/flexCard.Rd | 108 man/r2resize-package.Rd | 2 man/shinyExpandImage.Rd | 133 man/sizeableCard.Rd | 82 man/splitCard.Rd | 155 man/splitCard2.Rd | 118 man/windowCard.Rd | 99 tests/testthat.R | 8 tests/testthat/test-addJquery.R |only tests/testthat/test-containerResizer.R |only tests/testthat/test-flexCard.R | 34 tests/testthat/test-markdownResizer.R |only tests/testthat/test-novoImageResizer.R |only tests/testthat/test-sample.R |only tests/testthat/test-sliderCards.R |only vignettes/example_frequently_asked_r2resize.Rmd | 476 +- vignettes/introduction_r2resize.Rmd | 120 vignettes/r2resize-flexible-elastic-cards.Rmd |only vignettes/r2resize-image-and-markdown-resizing.Rmd |only vignettes/r2resize-resizable-containers.Rmd |only vignettes/resizable_containers_split_screen_r2resize.Rmd | 162 - vignettes/split_card_html_r2resize.Rmd | 174 - 73 files changed, 5652 insertions(+), 2441 deletions(-)
Title: Multi-Study Multi-Modality Generalized Factor Model
Description: We introduce a generalized factor model designed to jointly analyze high-dimensional multi-modality data from multiple studies by extracting study-shared and specified factors. Our factor models account for heterogeneous noises and overdispersion among modality variables with augmented covariates. We propose an efficient and speedy variational estimation procedure for estimating model parameters, along with a novel criterion for selecting the optimal number of factors. More details can be referred to Liu et al. (2025) <doi:10.48550/arXiv.2507.09889>.
Author: Wei Liu [aut, cre],
Qingzhi Zhong [aut]
Maintainer: Wei Liu <liuweideng@gmail.com>
Diff between MMGFM versions 1.2.0 dated 2025-07-29 and 1.2.1 dated 2025-11-12
DESCRIPTION | 14 +++++++------- MD5 | 10 +++++----- R/mmgfm.R | 13 +++++++++++-- README.md | 10 +++++++++- inst/doc/simu2_MMGFM.html | 4 ++-- inst/doc/simu_MMGFM.html | 4 ++-- 6 files changed, 36 insertions(+), 19 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-01-26 0.2.2
Title: Phylogenetic Tree Statistics
Description: Collection of phylogenetic tree statistics,
collected throughout the literature. All functions have been
written to maximize computation speed. The package includes
umbrella functions to calculate all statistics, all balance
associated statistics, or all branching time related statistics.
Furthermore, the 'treestats' package supports summary statistic
calculations on Ltables, provides speed-improved coding of
branching times, Ltable conversion and includes algorithms to
create intermediately balanced trees. Full description can be
found in Janzen (2024) <doi:10.1016/j.ympev.2024.108168>.
Author: Thijs Janzen [cre, aut]
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Diff between treestats versions 1.70.7 dated 2025-09-11 and 1.70.8 dated 2025-11-12
treestats-1.70.7/treestats/inst/doc/Example_abc.R |only treestats-1.70.7/treestats/inst/doc/Example_abc.Rmd |only treestats-1.70.7/treestats/inst/doc/Example_abc.html |only treestats-1.70.7/treestats/vignettes/Example_abc.Rmd |only treestats-1.70.8/treestats/DESCRIPTION | 16 - treestats-1.70.8/treestats/MD5 | 54 +++--- treestats-1.70.8/treestats/NEWS.md | 15 + treestats-1.70.8/treestats/R/J_stat.R | 4 treestats-1.70.8/treestats/R/RcppExports.R | 4 treestats-1.70.8/treestats/R/j_one_stat.R | 4 treestats-1.70.8/treestats/R/rpanda.R | 5 treestats-1.70.8/treestats/build/vignette.rds |binary treestats-1.70.8/treestats/inst/doc/Example_data.html | 82 +++++----- treestats-1.70.8/treestats/inst/doc/Getting_started.R | 4 treestats-1.70.8/treestats/inst/doc/Getting_started.Rmd | 4 treestats-1.70.8/treestats/inst/doc/Getting_started.html | 33 ++-- treestats-1.70.8/treestats/inst/doc/Speed_improvement.html | 4 treestats-1.70.8/treestats/man/entropy_j.Rd | 4 treestats-1.70.8/treestats/man/j_one.Rd | 4 treestats-1.70.8/treestats/src/RcppExports.cpp | 12 - treestats-1.70.8/treestats/src/laplacian.cpp | 27 --- treestats-1.70.8/treestats/tests/testthat/test-blum.R | 5 treestats-1.70.8/treestats/tests/testthat/test-colless.R | 2 treestats-1.70.8/treestats/tests/testthat/test-eigen_centrality.R | 10 + treestats-1.70.8/treestats/tests/testthat/test-make_unbalanced_tree.R | 1 treestats-1.70.8/treestats/tests/testthat/test-mean_i.R | 6 treestats-1.70.8/treestats/tests/testthat/test-minmax_adj.R | 5 treestats-1.70.8/treestats/tests/testthat/test-nltt.R | 71 ++++---- treestats-1.70.8/treestats/tests/testthat/test-pigot_rho.R | 13 + treestats-1.70.8/treestats/vignettes/Getting_started.Rmd | 4 30 files changed, 194 insertions(+), 199 deletions(-)
Title: Flexibly Reshape Data: A Reboot of the Reshape Package
Description: Flexibly restructure and aggregate data using just two
functions: melt and 'dcast' (or 'acast').
Author: Hadley Wickham [aut, cre]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between reshape2 versions 1.4.4 dated 2020-04-09 and 1.4.5 dated 2025-11-12
DESCRIPTION | 17 ++-- MD5 | 35 ++++----- NAMESPACE | 10 ++ NEWS.md | 5 + R/RcppExports.R | 4 - R/cast.r | 8 +- R/formula.r | 2 R/helper-margins.r | 2 R/melt.r | 12 ++- README.md | 8 +- inst/CITATION | 16 +--- man/cast.Rd | 6 - src/RcppExports.cpp | 14 ++- src/melt.cpp | 131 ++++++++++++++++----------------- tests/testthat.R | 8 ++ tests/testthat/test-cast.r | 132 ++++++++++++++++++---------------- tests/testthat/test-helper-colsplit.r |only tests/testthat/test-margins.r | 30 +++---- tests/testthat/test-melt.r | 43 +++++++---- 19 files changed, 264 insertions(+), 219 deletions(-)
Title: Nonparametric Circular Methods
Description: Nonparametric smoothing methods for density and regression estimation involving circular data,
including the estimation of the mean regression function and other conditional characteristics.
Author: Maria Alonso-Pena [aut, cre],
Maria Oliveira [aut],
Jose Ameijeiras-Alonso [aut],
Rosa M. Crujeiras [aut],
Irene Gijbels [aut],
Alberto Rodriguez-Casal [aut],
Felicita Scapini [dtc]
Maintainer: Maria Alonso-Pena <mariaalonso.pena@usc.es>
Diff between NPCirc versions 3.1.1 dated 2022-11-10 and 3.1.2 dated 2025-11-12
NPCirc-3.1.1/NPCirc/data/HumanMotorResonance.txt |only NPCirc-3.1.1/NPCirc/data/flywheels.txt |only NPCirc-3.1.1/NPCirc/data/pm10.txt |only NPCirc-3.1.1/NPCirc/data/spikes.txt |only NPCirc-3.1.1/NPCirc/data/zebrafish.txt |only NPCirc-3.1.2/NPCirc/DESCRIPTION | 46 ++++++++++---- NPCirc-3.1.2/NPCirc/MD5 | 62 +++++++++---------- NPCirc-3.1.2/NPCirc/build/partial.rdb |binary NPCirc-3.1.2/NPCirc/data/HumanMotorResonance.txt.gz |only NPCirc-3.1.2/NPCirc/data/flywheels.txt.gz |only NPCirc-3.1.2/NPCirc/data/pm10.txt.gz |only NPCirc-3.1.2/NPCirc/data/spikes.txt.gz |only NPCirc-3.1.2/NPCirc/data/zebrafish.txt.gz |only NPCirc-3.1.2/NPCirc/inst/CITATION | 53 +++++++++++----- NPCirc-3.1.2/NPCirc/man/ancova.circ.lin.Rd | 4 - NPCirc-3.1.2/NPCirc/man/bw.AA.Rd | 4 - NPCirc-3.1.2/NPCirc/man/bw.CV.Rd | 2 NPCirc-3.1.2/NPCirc/man/bw.boot.Rd | 2 NPCirc-3.1.2/NPCirc/man/bw.circ.local.lik.Rd | 4 - NPCirc-3.1.2/NPCirc/man/bw.pi.Rd | 2 NPCirc-3.1.2/NPCirc/man/bw.reg.circ.lin.Rd | 4 - NPCirc-3.1.2/NPCirc/man/bw.rt.Rd | 2 NPCirc-3.1.2/NPCirc/man/circ.local.lik.Rd | 4 - NPCirc-3.1.2/NPCirc/man/circsizer.density.Rd | 2 NPCirc-3.1.2/NPCirc/man/circsizer.regression.Rd | 2 NPCirc-3.1.2/NPCirc/man/dcircmix.Rd | 2 NPCirc-3.1.2/NPCirc/man/dpreg.circ.Rd | 4 - NPCirc-3.1.2/NPCirc/man/dwsn.Rd | 4 - NPCirc-3.1.2/NPCirc/man/kern.den.circ.Rd | 6 - NPCirc-3.1.2/NPCirc/man/kern.dpreg.circ.Rd | 4 - NPCirc-3.1.2/NPCirc/man/kern.reg.circ.lin.Rd | 6 - NPCirc-3.1.2/NPCirc/man/lines.regression.circular.Rd | 4 - NPCirc-3.1.2/NPCirc/man/modalreg.circ.lin.Rd | 6 - NPCirc-3.1.2/NPCirc/man/noeffect.circ.lin.Rd | 4 - NPCirc-3.1.2/NPCirc/man/plot.regression.circular.Rd | 4 - NPCirc-3.1.2/NPCirc/src/Makevars | 12 --- NPCirc-3.1.2/NPCirc/src/Makevars.win | 12 --- 37 files changed, 140 insertions(+), 121 deletions(-)
Title: Most Likely Transformations
Description: Likelihood-based estimation of conditional transformation
models via the most likely transformation approach described in
Hothorn et al. (2018) <DOI:10.1111/sjos.12291> and Hothorn (2020)
<DOI:10.18637/jss.v092.i01>. Shift-scale (Siegfried et al, 2023, <DOI:10.1080/00031305.2023.2203177>)
and multivariate (Klein et al, 2022, <DOI:10.1111/sjos.12501>) transformation models
are part of this package. A package vignette is available from <DOI:10.32614/CRAN.package.mlt.docreg> and
more convenient user interfaces to many models from <DOI:10.32614/CRAN.package.tram>.
Author: Torsten Hothorn [aut, cre]
Maintainer: Torsten Hothorn <Torsten.Hothorn@R-project.org>
Diff between mlt versions 1.7-1 dated 2025-10-31 and 1.7-2 dated 2025-11-12
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- R/R.R | 2 +- build/partial.rdb |binary inst/NEWS.Rd | 10 ++++++++++ man/R.Rd | 3 ++- 6 files changed, 22 insertions(+), 11 deletions(-)