Title: Group Sequential Design with Non-Constant Effect
Description: The goal of 'gsDesign2' is to enable fixed or group sequential
design under non-proportional hazards. To enable highly flexible enrollment,
time-to-event and time-to-dropout assumptions, 'gsDesign2' offers piecewise
constant enrollment, failure rates, and dropout rates for a stratified
population. This package includes three methods for designs:
average hazard ratio, weighted logrank tests in Yung and Liu (2019)
<doi:10.1111/biom.13196>, and MaxCombo tests.
Substantial flexibility on top of what is in the 'gsDesign' package
is intended for selecting boundaries.
Author: Keaven Anderson [aut],
Yujie Zhao [aut, cre],
Yilong Zhang [aut],
John Blischak [aut],
Yihui Xie [aut],
Nan Xiao [aut],
Jianxiao Yang [aut],
Amin Shirazi [ctb],
Ruixue Wang [ctb],
Yi Cui [ctb],
Ping Yang [ctb],
Xin Tong Li [ctb],
Chenxiang Li [ctb],
[...truncated...]
Maintainer: Yujie Zhao <yujie.zhao@merck.com>
Diff between gsDesign2 versions 1.1.6 dated 2025-09-11 and 1.1.7 dated 2025-11-19
DESCRIPTION | 10 MD5 | 114 NAMESPACE | 10 NEWS.md | 19 R/ahr.R | 6 R/as_gt.R | 70 R/as_rtf.R | 11 R/expected_event.R | 21 R/expected_time.R | 1 R/fixed_design_ahr.R | 16 R/fixed_design_fh.R | 24 R/fixed_design_lf.R | 25 R/fixed_design_maxcombo.R | 32 R/fixed_design_mb.R | 21 R/fixed_design_milestone.R | 22 R/fixed_design_rd.R | 20 R/fixed_design_rmst.R | 23 R/gs_bound_summary.R | 6 R/gs_design_ahr.R | 61 R/gs_design_combo.R | 20 R/gs_design_rd.R | 17 R/gs_design_wlr.R | 22 R/gs_power_ahr.R | 21 R/gs_power_combo.R | 20 R/gs_power_npe.R | 15 R/gs_power_rd.R | 22 R/gs_power_wlr.R | 21 R/gs_spending_bound.R | 7 R/gs_spending_combo.R | 3 R/gs_update_ahr.R | 9 R/print.R |only R/pw_info.R | 13 R/summary.R | 35 R/text_summary.R | 40 R/to_integer.R | 62 R/utils.R | 13 inst/doc/gsDesign2.html | 6157 ++++------ man/ahr.Rd | 2 man/as_gt.Rd | 8 man/as_rtf.Rd | 8 man/expected_event.Rd | 18 man/fixed_design.Rd | 6 man/gs_design_ahr.Rd | 24 man/gs_design_combo.Rd | 6 man/gs_design_wlr.Rd | 24 man/gs_power_ahr.Rd | 26 man/gs_power_combo.Rd | 6 man/gs_power_design_npe.Rd | 27 man/gs_power_wlr.Rd | 24 man/pw_info.Rd | 2 man/text_summary.Rd | 9 tests/testthat/_snaps/independent_as_gt.md | 84 tests/testthat/_snaps/independent_as_rtf/fixed_design_ahr_footnote.rtf | 2 tests/testthat/_snaps/independent_as_rtf/fixed_design_ahr_title.rtf | 2 tests/testthat/test-developer-as_gt.R |only tests/testthat/test-developer-pw_info.R | 15 tests/testthat/test-developer-to_integer.R | 18 tests/testthat/test-independent-ahr.R | 13 tests/testthat/test-independent-gs_power_ahr.R | 50 59 files changed, 3677 insertions(+), 3706 deletions(-)
Title: Precision Agriculture Computational Utilities
Description: Support for a variety of commonly used precision agriculture operations. Includes functions to download and process raw satellite images from Sentinel-2 <https://documentation.dataspace.copernicus.eu/APIs/OData.html>. Includes functions that download vegetation index statistics for a given period of time, without the need to download the raw images <https://documentation.dataspace.copernicus.eu/APIs/SentinelHub/Statistical.html>. There are also functions to download and visualize weather data in a historical context. Lastly, the package also contains functions to process yield monitor data. These functions can build polygons around recorded data points, evaluate the overlap between polygons, clean yield data, and smooth yield maps.
Author: dos Santos Caio [aut, cre],
Miguez Fernando [aut]
Maintainer: dos Santos Caio <clsantos@iastate.edu>
Diff between pacu versions 0.1.72 dated 2025-09-26 and 0.1.74 dated 2025-11-19
pacu-0.1.72/pacu/inst/extdata/S2B_MSIL2A_20230630T165849_N0509_R069_T15TVG_20230630T213917.zip |only pacu-0.1.72/pacu/inst/extdata/S2B_MSIL2A_20230703T170859_N0509_R112_T15TVG_20230703T211843.zip |only pacu-0.1.74/pacu/DESCRIPTION | 6 +- pacu-0.1.74/pacu/MD5 | 28 +++++----- pacu-0.1.74/pacu/R/get_rgb.R | 28 +++++----- pacu-0.1.74/pacu/R/yield.R | 14 +++-- pacu-0.1.74/pacu/inst/doc/pacu.html | 4 - pacu-0.1.74/pacu/inst/doc/pacu_faq.html | 4 - pacu-0.1.74/pacu/inst/doc/pacu_sat.Rmd | 2 pacu-0.1.74/pacu/inst/doc/pacu_sat.html | 22 +++---- pacu-0.1.74/pacu/inst/doc/pacu_weather.html | 4 - pacu-0.1.74/pacu/inst/doc/pacu_ym.html | 4 - pacu-0.1.74/pacu/inst/extdata/S2B_MSIL2A_20230623T170849_N0510_R112_T15TVG_20240910T005418.zip |only pacu-0.1.74/pacu/inst/extdata/S2B_MSIL2A_20230630T165849_N0510_R069_T15TVG_20241003T133505.zip |only pacu-0.1.74/pacu/inst/extdata/ds-browse-object.rds |binary pacu-0.1.74/pacu/man/pa_get_rgb.Rd | 5 + pacu-0.1.74/pacu/vignettes/pacu_sat.Rmd | 2 17 files changed, 64 insertions(+), 59 deletions(-)
Title: Econdataverse 'IMF Data API' Client
Description: Provides user-friendly functions for programmatic access to macroeconomic data from the International Monetary Fund's 'SDMX 3.0 IMF Data API' <https://data.imf.org/en/Resource-Pages/IMF-API>.
Author: Teal Insights [cre, cph],
Christopher C. Smith [aut],
Christoph Scheuch [ctb]
Maintainer: Teal Insights <lte@tealinsights.com>
Diff between imfapi versions 0.1.1 dated 2025-10-30 and 0.1.2 dated 2025-11-19
DESCRIPTION | 6 +++--- MD5 | 18 +++++++++--------- NEWS.md | 4 ++++ R/imf_get_codelists.R | 2 ++ R/imf_get_dataflows.R | 2 ++ R/imf_get_datastructure.R | 2 ++ README.md | 16 ++++++++-------- man/imf_get_codelists.Rd | 2 ++ man/imf_get_dataflows.Rd | 2 ++ man/imf_get_datastructure.Rd | 2 ++ 10 files changed, 36 insertions(+), 20 deletions(-)
Title: Extension Types for Spatial Data for Use with 'Arrow'
Description: Provides extension types and conversions to between R-native
object types and 'Arrow' columnar types. This includes integration among
the 'arrow', 'nanoarrow', 'sf', and 'wk' packages such that spatial
metadata is preserved wherever possible. Extension type implementations
ensure first-class geometry data type support in the 'arrow' and 'nanoarrow'
packages.
Author: Dewey Dunnington [aut, cre] ,
Anthony North [ctb],
Apache Software Foundation [cph],
Ulf Adams [cph],
Daniel Lemire [cph],
Joao Paulo Magalhaes [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between geoarrow versions 0.4.0 dated 2025-09-21 and 0.4.1 dated 2025-11-19
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 4 ++++ tests/testthat/test-pkg-sf.R | 2 +- 4 files changed, 12 insertions(+), 8 deletions(-)
Title: Behavioral Insight Design: A Toolkit for Integrating Behavioral
Science in UI/UX Design
Description: Provides a framework and toolkit to guide R dashboard developers in
implementing the Behavioral Insight Design (BID) framework. The package offers
functions for documenting each of the five stages (Interpret, Notice,
Anticipate, Structure, and Validate), along with a comprehensive concept
dictionary. Works with both 'shiny' applications and 'Quarto' dashboards.
Author: Jeremy Winget [aut, cre]
Maintainer: Jeremy Winget <contact@jrwinget.com>
Diff between bidux versions 0.3.2 dated 2025-10-28 and 0.3.3 dated 2025-11-19
DESCRIPTION | 19 MD5 | 115 +- NAMESPACE | 1 NEWS.md | 24 R/bid_anticipate.R | 75 + R/bid_interpret.R | 10 R/bid_notice.R | 4 R/bid_quick_suggest.R |only R/bid_report.R | 3 R/bid_structure.R | 34 R/data_classes.R | 19 R/mappings.R | 2 R/structure_components.R | 14 R/structure_suggest.R | 179 ++++ R/suggest_rules.R | 5 R/telemetry_ingest.R | 240 ++++-- R/telemetry_notices.R | 100 +- R/utils_domain.R | 2 R/utils_validation.R | 8 README.md | 20 build/vignette.rds |binary inst/WORDLIST | 11 inst/doc/api-modernization.R | 4 inst/doc/api-modernization.Rmd | 6 inst/doc/api-modernization.html | 6 inst/doc/getting-started.R | 52 + inst/doc/getting-started.Rmd | 73 + inst/doc/getting-started.html | 447 ++++++----- inst/doc/practical-examples.R | 4 inst/doc/practical-examples.Rmd | 4 inst/doc/practical-examples.html | 4 inst/doc/quick-start.R |only inst/doc/quick-start.Rmd |only inst/doc/quick-start.html |only inst/doc/telemetry-integration.R | 78 +- inst/doc/telemetry-integration.Rmd | 78 +- inst/doc/telemetry-integration.html | 130 +-- inst/extdata/bid_concepts_data.csv | 6 man/assign_category.Rd |only man/assign_difficulty.Rd |only man/bid_ingest_telemetry.Rd | 39 - man/bid_quick_suggest.Rd |only man/bid_report.Rd | 3 man/bid_structure.Rd | 25 man/bid_suggest_components.Rd | 8 man/bid_telemetry.Rd | 29 man/bidux-package.Rd | 2 man/flatten_suggestions_to_tibble.Rd |only man/read_telemetry_data.Rd | 10 man/read_telemetry_sqlite.Rd | 6 man/structure_suggestions.Rd | 15 tests/testthat/test-bid_anticipate.R | 1031 ++++++++++++++++++++++++++ tests/testthat/test-bid_ingest_telemetry.R | 1114 +++++++++++++++++++++++++++++ tests/testthat/test-bid_interpret.R | 652 ++++++++++++++++ tests/testthat/test-bid_quick_suggest.R |only tests/testthat/test-data_concepts.R | 4 tests/testthat/test-structure_tibble.R |only tests/testthat/test-telemetry_ingest.R | 5 tests/testthat/test-utils.R | 9 vignettes/api-modernization.Rmd | 6 vignettes/getting-started.Rmd | 73 + vignettes/practical-examples.Rmd | 4 vignettes/quick-start.Rmd |only vignettes/telemetry-integration.Rmd | 78 +- 64 files changed, 4202 insertions(+), 688 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-17 0.4.0
Title: Develop and Apply Two-Regression Algorithms
Description: Facilitates development and application of two-regression
algorithms for research-grade wearable devices. It provides an easy
way for users to access previously-developed algorithms, and also to
develop their own. Initial motivation came from Hibbing PR, LaMunion SR,
Kaplan AS, & Crouter SE (2018) <doi:10.1249/MSS.0000000000001532>.
However, other algorithms are now supported. Please see the associated
references in the package documentation for full details of the algorithms
that are supported.
Author: Paul R. Hibbing [aut, cre],
Vincent T. van Hees [ctb]
Maintainer: Paul R. Hibbing <paulhibbing@gmail.com>
This is a re-admission after prior archival of version 1.0.0 dated 2022-09-05
Diff between TwoRegression versions 1.0.0 dated 2022-09-05 and 1.1.1 dated 2025-11-19
TwoRegression-1.0.0/TwoRegression/LICENSE |only TwoRegression-1.0.0/TwoRegression/R/hibbing_smooth_old.R |only TwoRegression-1.0.0/TwoRegression/README.md |only TwoRegression-1.1.1/TwoRegression/DESCRIPTION | 14 TwoRegression-1.1.1/TwoRegression/MD5 | 71 TwoRegression-1.1.1/TwoRegression/NEWS.md | 16 TwoRegression-1.1.1/TwoRegression/R/TwoRegression.R | 8 TwoRegression-1.1.1/TwoRegression/R/hibbing_subwrapper__main.R | 11 TwoRegression-1.1.1/TwoRegression/R/plot_2rm__main.R | 43 TwoRegression-1.1.1/TwoRegression/R/plot_2rm_helpers.R | 2 TwoRegression-1.1.1/TwoRegression/R/predict_2rm.R | 10 TwoRegression-1.1.1/TwoRegression/build/vignette.rds |binary TwoRegression-1.1.1/TwoRegression/inst/CITATION | 7 TwoRegression-1.1.1/TwoRegression/inst/doc/TwoRegression.R | 6 TwoRegression-1.1.1/TwoRegression/inst/doc/TwoRegression.html | 907 +++++----- TwoRegression-1.1.1/TwoRegression/man/DualCP_LOSO.Rd | 156 - TwoRegression-1.1.1/TwoRegression/man/all_data.Rd | 84 TwoRegression-1.1.1/TwoRegression/man/count_data.Rd | 46 TwoRegression-1.1.1/TwoRegression/man/directions.Rd | 52 TwoRegression-1.1.1/TwoRegression/man/fit_2rm.Rd | 214 +- TwoRegression-1.1.1/TwoRegression/man/get_2rm_formula.Rd | 34 TwoRegression-1.1.1/TwoRegression/man/get_cut_point.Rd | 76 TwoRegression-1.1.1/TwoRegression/man/get_cv.Rd | 138 - TwoRegression-1.1.1/TwoRegression/man/get_lm_formula.Rd | 30 TwoRegression-1.1.1/TwoRegression/man/hibbing-helpers.Rd | 12 TwoRegression-1.1.1/TwoRegression/man/imu_to_check.Rd | 56 TwoRegression-1.1.1/TwoRegression/man/imu_to_collapse.Rd | 78 TwoRegression-1.1.1/TwoRegression/man/plot.TwoRegression.Rd | 280 +-- TwoRegression-1.1.1/TwoRegression/man/plotCP.Rd | 42 TwoRegression-1.1.1/TwoRegression/man/plot_sed.Rd | 76 TwoRegression-1.1.1/TwoRegression/man/plot_walkrun.Rd | 72 TwoRegression-1.1.1/TwoRegression/man/predict.TwoRegression.Rd | 170 - TwoRegression-1.1.1/TwoRegression/man/raw_for_cv.Rd | 42 TwoRegression-1.1.1/TwoRegression/man/raw_to_collapse.Rd | 44 TwoRegression-1.1.1/TwoRegression/man/summary.TwoRegression.Rd | 190 +- TwoRegression-1.1.1/TwoRegression/tests/testthat.R | 8 TwoRegression-1.1.1/TwoRegression/tests/testthat/_snaps/fit_2rm__main/2rm.rds |binary TwoRegression-1.1.1/TwoRegression/tests/testthat/_snaps/summary_2rm__main/summary2rm.rds |binary 38 files changed, 1503 insertions(+), 1492 deletions(-)
Title: Apply Sojourn Methods for Processing ActiGraph Accelerometer
Data
Description: Provides a simple way for utilizing Sojourn methods for
accelerometer processing, as detailed in Lyden K, Keadle S,
Staudenmayer J, & Freedson P (2014) <doi:10.1249/MSS.0b013e3182a42a2d>,
Ellingson LD, Schwabacher IJ, Kim Y, Welk GJ, & Cook DB (2016)
<doi:10.1249/MSS.0000000000000915>, and Hibbing PR, Ellingson LD,
Dixon PM, & Welk GJ (2018) <doi:10.1249/MSS.0000000000001486>.
Author: Paul R. Hibbing [aut, cre],
Kate Lyden [aut],
Isaac J. Schwabacher [aut]
Maintainer: Paul R. Hibbing <paulhibbing@gmail.com>
This is a re-admission after prior archival of version 1.1.0 dated 2021-05-07
Diff between Sojourn versions 1.1.0 dated 2021-05-07 and 1.2.1 dated 2025-11-19
Sojourn-1.1.0/Sojourn/README.md |only Sojourn-1.2.1/Sojourn/DESCRIPTION | 8 ++++---- Sojourn-1.2.1/Sojourn/MD5 | 13 ++++++------- Sojourn-1.2.1/Sojourn/NEWS.md | 20 ++++++++++++++++++++ Sojourn-1.2.1/Sojourn/R/SIP_Functions.R | 2 ++ Sojourn-1.2.1/Sojourn/R/youth_input_demographic.R | 4 ++-- Sojourn-1.2.1/Sojourn/inst/CITATION | 19 +++++++++++-------- Sojourn-1.2.1/Sojourn/man/enhance_actigraph.Rd | 3 +++ 8 files changed, 48 insertions(+), 21 deletions(-)
Title: Quantitative Polymerase Chain Reaction (qPCR) Data Mining and
Machine Learning Toolkit as Described in Burdukiewicz (2022)
<doi:10.21105/Joss.04407>
Description: Extracts features from amplification curve data of quantitative
Polymerase Chain Reactions (qPCR) according to Pabinger et al. 2014
<doi:10.1016/j.bdq.2014.08.002> for machine learning purposes. Helper
functions prepare the amplification curve data for processing as functional
data (e.g., Hausdorff distance) or enable the plotting of amplification
curve classes (negative, ambiguous, positive). The hookreg() and hookregNL()
functions of Burdukiewicz et al. (2018) <doi:10.1016/j.bdq.2018.08.001>
can be used to predict amplification curves with an hook effect-like
curvature. The pcrfit_single() function can be used to extract features
from an amplification curve.
Author: Stefan Roediger [aut] ,
Michal Burdukiewicz [aut] ,
Andrej-Nikolai Spiess [cre, aut] ,
Konstantin A. Blagodatskikh [aut] ,
Dominik Rafacz [ctb]
Maintainer: Andrej-Nikolai Spiess <draspiess@gmail.com>
Diff between PCRedux versions 1.2-0 dated 2025-06-13 and 1.2-1 dated 2025-11-19
DESCRIPTION | 8 +++---- MD5 | 24 ++++++++++----------- NEWS | 3 ++ build/vignette.rds |binary inst/doc/PCRedux.pdf |binary tests/testthat/test_encu.R | 4 +-- tests/testthat/test_head2tailratio.R | 28 ++++++++++++------------ tests/testthat/test_hookreg.R | 28 ++++++++++++------------ tests/testthat/test_hookregNL.R | 40 +++++++++++++++++------------------ tests/testthat/test_mblrr.R | 32 ++++++++++++++-------------- tests/testthat/test_pcrfit_single.R | 14 ++++++------ tests/testthat/test_performeR.R | 24 ++++++++++----------- tests/testthat/test_qPCR2fdata.R | 30 +++++++++++++------------- 13 files changed, 119 insertions(+), 116 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'SQLite' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'SQLite' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcsqlite versions 0.20.0 dated 2025-09-16 and 0.21.0 dated 2025-11-19
adbcsqlite-0.20.0/adbcsqlite/src/c/vendor/portable-snippets/safe-math.h |only adbcsqlite-0.21.0/adbcsqlite/DESCRIPTION | 6 adbcsqlite-0.21.0/adbcsqlite/MD5 | 14 - adbcsqlite-0.21.0/adbcsqlite/src/c/driver/postgresql/bind_stream.h | 6 adbcsqlite-0.21.0/adbcsqlite/src/c/driver/postgresql/copy/reader.h | 40 +++- adbcsqlite-0.21.0/adbcsqlite/src/c/driver/postgresql/statement.cc | 18 +- adbcsqlite-0.21.0/adbcsqlite/src/c/driver_manager/adbc_driver_manager.cc | 89 +++++++--- adbcsqlite-0.21.0/adbcsqlite/src/c/vendor/portable-snippets/include |only adbcsqlite-0.21.0/adbcsqlite/tests/testthat/test-adbcsqlite-package.R | 19 ++ 9 files changed, 151 insertions(+), 41 deletions(-)
Title: 'Arrow' Database Connectivity ('ADBC') 'PostgreSQL' Driver
Description: Provides a developer-facing interface to the 'Arrow' Database
Connectivity ('ADBC') 'PostgreSQL' driver for the purposes of building high-level
database interfaces for users. 'ADBC' <https://arrow.apache.org/adbc/> is
an API standard for database access libraries that uses 'Arrow' for result
sets and query parameters.
Author: Dewey Dunnington [aut, cre] ,
Apache Arrow [aut, cph],
Apache Software Foundation [cph]
Maintainer: Dewey Dunnington <dewey@dunnington.ca>
Diff between adbcpostgresql versions 0.20.0 dated 2025-09-16 and 0.21.0 dated 2025-11-19
adbcpostgresql-0.20.0/adbcpostgresql/src/c/vendor/portable-snippets/safe-math.h |only adbcpostgresql-0.21.0/adbcpostgresql/DESCRIPTION | 6 adbcpostgresql-0.21.0/adbcpostgresql/MD5 | 18 +- adbcpostgresql-0.21.0/adbcpostgresql/src/Makevars.in | 2 adbcpostgresql-0.21.0/adbcpostgresql/src/Makevars.ucrt | 2 adbcpostgresql-0.21.0/adbcpostgresql/src/Makevars.win | 2 adbcpostgresql-0.21.0/adbcpostgresql/src/c/driver/postgresql/bind_stream.h | 6 adbcpostgresql-0.21.0/adbcpostgresql/src/c/driver/postgresql/copy/reader.h | 40 +++- adbcpostgresql-0.21.0/adbcpostgresql/src/c/driver/postgresql/statement.cc | 18 +- adbcpostgresql-0.21.0/adbcpostgresql/src/c/driver_manager/adbc_driver_manager.cc | 89 +++++++--- adbcpostgresql-0.21.0/adbcpostgresql/src/c/vendor/portable-snippets/include |only 11 files changed, 137 insertions(+), 46 deletions(-)
More information about adbcpostgresql at CRAN
Permanent link
Title: Plotting 'ggplot2' Graphics in an 'XKCD' Style
Description: Provides custom geoms and themes to create charts and graphics in
the distinctive, hand-drawn 'XKCD' webcomic style using the 'ggplot2' framework.
The package utilizes custom layers for jittered lines, segments, circles, and
figures, and includes a theme that supports the necessary 'XKCD' font.
Author: Emilio Torres-Manzanera [aut],
Enrique Toledo [ctb, cre]
Maintainer: Enrique Toledo <enriquetoledo@gmail.com>
This is a re-admission after prior archival of version 0.0.6 dated 2018-07-11
Diff between xkcd versions 0.0.6 dated 2018-07-11 and 0.1.0 dated 2025-11-19
xkcd-0.0.6/xkcd/inst/doc/xkcd-intro.Rnw |only xkcd-0.0.6/xkcd/inst/doc/xkcd-intro.pdf |only xkcd-0.0.6/xkcd/vignettes/article-ref.bib |only xkcd-0.0.6/xkcd/vignettes/convincing.png |only xkcd-0.0.6/xkcd/vignettes/gr1.pdf |only xkcd-0.0.6/xkcd/vignettes/gr1.png |only xkcd-0.0.6/xkcd/vignettes/graxis.png |only xkcd-0.0.6/xkcd/vignettes/grbar.png |only xkcd-0.0.6/xkcd/vignettes/grcaritas.png |only xkcd-0.0.6/xkcd/vignettes/grhelp.png |only xkcd-0.0.6/xkcd/vignettes/grhomosapiens.png |only xkcd-0.0.6/xkcd/vignettes/grlatex.png |only xkcd-0.0.6/xkcd/vignettes/grmathematica.png |only xkcd-0.0.6/xkcd/vignettes/grmotherday.png |only xkcd-0.0.6/xkcd/vignettes/grnofonts.png |only xkcd-0.0.6/xkcd/vignettes/grpython.png |only xkcd-0.0.6/xkcd/vignettes/grrange.png |only xkcd-0.0.6/xkcd/vignettes/grsevan.png |only xkcd-0.0.6/xkcd/vignettes/grstickfigure.png |only xkcd-0.0.6/xkcd/vignettes/grtwo.png |only xkcd-0.0.6/xkcd/vignettes/jsslogo.jpg |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-008.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-011.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-012.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-015.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-016.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-017.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-018.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-021.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-022.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-CaritasSpain.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-angles.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-facetcity.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-facetvs.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-motherday.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro-twoman.png |only xkcd-0.0.6/xkcd/vignettes/xkcd-intro.Rnw |only xkcd-0.1.0/xkcd/DESCRIPTION | 39 xkcd-0.1.0/xkcd/LICENSE |only xkcd-0.1.0/xkcd/MD5 | 82 - xkcd-0.1.0/xkcd/NAMESPACE | 6 xkcd-0.1.0/xkcd/NEWS | 17 xkcd-0.1.0/xkcd/R/geom_xkcdpath.R |only xkcd-0.1.0/xkcd/R/theme_xkcd.R | 81 - xkcd-0.1.0/xkcd/R/xkcdaxis.R | 308 +---- xkcd-0.1.0/xkcd/R/xkcdline.R | 246 +--- xkcd-0.1.0/xkcd/R/xkcdman.R | 210 +-- xkcd-0.1.0/xkcd/R/xkcdrect.R | 181 +-- xkcd-0.1.0/xkcd/R/zzz.R | 42 xkcd-0.1.0/xkcd/README.md |only xkcd-0.1.0/xkcd/build/partial.rdb |binary xkcd-0.1.0/xkcd/build/vignette.rds |binary xkcd-0.1.0/xkcd/inst/_pkgdown.yml |only xkcd-0.1.0/xkcd/inst/doc/xkcd-intro.R | 1023 ++++++++---------- xkcd-0.1.0/xkcd/inst/doc/xkcd-intro.Rmd |only xkcd-0.1.0/xkcd/inst/doc/xkcd-intro.html |only xkcd-0.1.0/xkcd/man/geom_xkcdpath.Rd |only xkcd-0.1.0/xkcd/man/theme_xkcd.Rd | 11 xkcd-0.1.0/xkcd/man/xkcdaxis.Rd | 9 xkcd-0.1.0/xkcd/man/xkcdline.Rd | 55 xkcd-0.1.0/xkcd/man/xkcdman.Rd | 77 - xkcd-0.1.0/xkcd/man/xkcdrect.Rd | 52 xkcd-0.1.0/xkcd/vignettes/font_check.png |only xkcd-0.1.0/xkcd/vignettes/grfonts.png |binary xkcd-0.1.0/xkcd/vignettes/xkcd-intro.Rmd |only 65 files changed, 1051 insertions(+), 1388 deletions(-)
Title: Paws Low-Level Amazon Web Services API
Description: Functions for making low-level API requests to Amazon Web Services
<https://aws.amazon.com>. The functions handle building, signing, and
sending requests, and receiving responses. They are designed to help build
higher-level interfaces to individual services, such as Simple Storage
Service (S3).
Author: David Kretch [aut],
Adam Banker [aut],
Dyfan Jones [cre],
Amazon.com, Inc. [cph]
Maintainer: Dyfan Jones <dyfan.r.jones@gmail.com>
Diff between paws.common versions 0.8.5 dated 2025-07-25 and 0.8.6 dated 2025-11-19
DESCRIPTION | 14 +-- MD5 | 55 ++++++++------- NAMESPACE | 13 +++ NEWS.md | 5 + R/RcppExports.R | 6 + R/cache.R | 5 - R/config.R | 46 ++++++------ R/convert.R | 3 R/credential_providers.R | 66 ++++++++++++++++++ R/credentials.R | 6 + R/handlers_rest.R | 14 +-- R/handlers_stream.R | 81 ++++++++++++++++++++-- R/jsonutil.R | 101 ---------------------------- R/populate.R | 8 -- R/signer_bearer.R |only R/signer_v4.R | 15 ++++ R/tags.R | 34 +++------ R/util.R | 11 +++ man/paws_reset_cache.Rd | 1 src/RcppExports.cpp | 12 +++ src/json_builder.cpp |only src/json_escape.cpp | 2 src/json_escape.h |only src/utils.cpp | 50 +++++++++++++ src/utils.h |only tests/testthat/test_config.R | 12 +-- tests/testthat/test_credential_providers.R | 104 +++++++++++++++++++++++++++++ tests/testthat/test_credentials.R | 72 ++++++++++++++++++++ tests/testthat/test_handlers_stream.R | 4 - tests/testthat/test_jsonutil.R | 33 ++++++++- tests/testthat/test_signer_bearer.R |only 31 files changed, 563 insertions(+), 210 deletions(-)
Title: HIC diffeREntial Analysis Method
Description: Perform Hi-C data differential analysis based on pixel-level
differential analysis and a post hoc inference strategy to quantify
signal in clusters of pixels. Clusters of pixels are obtained through
a connectivity-constrained two-dimensional hierarchical clustering.
Author: Elise Jorge [aut, cre],
Sylvain Foissac [aut] ,
Toby Hocking [aut] ,
Pierre Neuvial [aut] ,
Nathalie Vialaneix [aut] ,
Gilles Blanchard [ctb],
Guillermo Durand [ctb] ,
Nicolas Enjalbert-Courrech [ctb],
Etienne Roquain [ctb]
Maintainer: Elise Jorge <elise.jorge@inrae.fr>
Diff between hicream versions 0.0.1 dated 2025-07-25 and 0.0.2 dated 2025-11-19
DESCRIPTION | 24 ++-- MD5 | 41 +++---- NEWS.md |only R/AggloClust2D.R | 58 ++++++++-- R/helpers.R | 59 +++++++++- R/loadData.R | 1 R/performTest.R | 1 R/postHoc.R | 21 +++ README.md | 232 ++++++++++++++++++++++++------------------- build/vignette.rds |binary inst/doc/A-Installation.Rmd | 3 inst/doc/A-Installation.html | 19 +-- inst/doc/B-Introduction.R | 25 ++-- inst/doc/B-Introduction.Rmd | 48 +++++--- inst/doc/B-Introduction.html | 192 ++++++++++++++++++++--------------- inst/python/2Dclust.py | 22 +--- man/AggloClust2D.Rd | 16 +- man/loadData.Rd | 1 man/performTest.Rd | 1 man/postHoc.Rd | 11 +- vignettes/A-Installation.Rmd | 3 vignettes/B-Introduction.Rmd | 48 +++++--- 22 files changed, 515 insertions(+), 311 deletions(-)
Title: Easily Convert GDP Data
Description: Convert GDP time series data from one unit to
another. All common GDP units are included, i.e. current and constant
local currency units, US$ via market exchange rates and international
dollars via purchasing power parities.
Author: Johannes Koch [aut, cre]
Maintainer: Johannes Koch <jokoch@pik-potsdam.de>
Diff between GDPuc versions 1.0.4 dated 2024-09-04 and 1.6.0 dated 2025-11-19
DESCRIPTION | 18 - MD5 | 86 +++---- NAMESPACE | 4 NEWS.md | 13 + R/GDPuc-package.R | 4 R/adapt_source.R | 87 +++++-- R/check_user_input.R | 89 ++++--- R/composite_conversions.R | 220 ++++++++---------- R/convertGDP.R | 133 ++++++++--- R/elemental_conversions.R | 95 +++++--- R/get_conversion_factors.R | 3 R/madrat.R |only R/print_source_info.R | 1 R/replace_regions_with_countries.R | 49 ++-- R/transform_user_input.R | 113 ++++++--- R/utils.R | 10 README.md | 9 build/vignette.rds |binary inst/doc/handle_NAs.R | 15 - inst/doc/handle_NAs.Rmd | 24 -- inst/doc/handle_NAs.html | 104 +++----- inst/doc/magpie.html | 2 inst/doc/source.R | 41 ++- inst/doc/source.Rmd | 82 ++++-- inst/doc/source.html | 295 +++++++++++++++---------- inst/doc/verbose.html | 2 inst/doc/warn.R | 2 inst/doc/warn.html | 2 inst/doc/with_regions.R | 16 + inst/doc/with_regions.Rmd | 34 ++ inst/doc/with_regions.html | 107 +++++---- man/GDPuc-package.Rd | 2 man/convertGDP.Rd | 80 +++++- man/print_source_info.Rd | 2 tests/testthat/setup-global_vars.R | 4 tests/testthat/test-01_check_user_input.R | 115 ++++++--- tests/testthat/test-02_transform_user_input.R | 34 ++ tests/testthat/test-03_elemental_conversions.R | 90 +++++-- tests/testthat/test-04_composite_conversions.R | 99 ++++---- tests/testthat/test-05_convertGDP.R | 116 +++++---- tests/testthat/test-06_replace_NAs.R | 72 +++++- tests/testthat/test-11_wrappers.R |only vignettes/handle_NAs.Rmd | 24 -- vignettes/source.Rmd | 82 ++++-- vignettes/with_regions.Rmd | 34 ++ 45 files changed, 1534 insertions(+), 880 deletions(-)
Title: Many Ways to Make, Modify, Mark, and Measure Myriad Networks
Description: Many tools for making, modifying, marking, measuring,
and motifs and memberships of many different types of networks.
All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects,
on directed, multiplex, multimodal, signed, and other networks.
The package includes functions for importing and exporting, creating and generating networks,
modifying networks and node and tie attributes,
and describing networks with sensible defaults.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Christian Steglich [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between manynet versions 1.6.5 dated 2025-10-24 and 1.7.0 dated 2025-11-19
DESCRIPTION | 8 MD5 | 55 - NAMESPACE | 3 NEWS.md | 57 + R/class_marks.R | 6 R/class_models.R | 1 R/class_networks.R | 7 R/make_generate.R | 14 R/manip_as.R | 30 - R/manip_nodes.R | 6 R/manip_split.R | 97 ++- R/manynet-glossary.R | 16 R/manynet-utils.R | 3 R/mark_net.R | 5 R/mark_nodes.R | 69 +- R/measure_diffusion.R | 6 R/measure_heterogeneity.R | 277 ++++++++- inst/tutorials/tutorial1/data.Rmd | 7 inst/tutorials/tutorial1/data.html | 812 +++++++++++++++------------- man/manip_changes.Rd | 3 man/mark_diff.Rd | 2 man/measure_diffusion_infection.Rd | 2 man/measure_diffusion_node.Rd | 4 man/measure_heterogeneity.Rd | 104 +++ tests/testthat/test-make_generate.R | 23 tests/testthat/test-make_play.R |only tests/testthat/test-manip_add.R | 5 tests/testthat/test-manip_as.R | 7 tests/testthat/test-measure_heterogeneity.R | 11 29 files changed, 1119 insertions(+), 521 deletions(-)
Title: Cox Regression (Proportional Hazards Model) with Multiple Causes
and Mixed Effects
Description: Extends the Cox model to events with more than one causes. Also supports random and fixed effects, tied events, and time-varying variables. Model details are provided in Peng et al. (2018) <doi:10.1509/jmr.14.0643>.
Author: Jing Peng [aut, cre]
Maintainer: Jing Peng <jing.peng@uconn.edu>
Diff between CoxPlus versions 1.5.6 dated 2025-11-19 and 1.5.7 dated 2025-11-19
DESCRIPTION | 12 ++++++------ MD5 | 2 +- 2 files changed, 7 insertions(+), 7 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-09-13 0.1.6
2025-05-23 0.1.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-11 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-21 0.1.6
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-10-28 1.5.2
2025-10-14 1.5.1
2025-03-03 1.4.1
2025-02-07 1.4.0
2024-12-11 1.3.1
2024-10-16 1.3.0
2023-11-24 1.2.6
2023-09-20 1.2.5
2022-11-14 1.2.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-19 1.14.6.8
2025-11-17 1.14.6.7
2025-11-10 1.14.6.4
Title: R Interface to Apache Spark
Description: R interface to Apache Spark, a fast and general
engine for big data processing, see <https://spark.apache.org/>. This
package supports connecting to local and remote Apache Spark clusters,
provides a 'dplyr' compatible back-end, and provides an interface to
Spark's built-in machine learning algorithms.
Author: Javier Luraschi [aut],
Kevin Kuo [aut] ,
Kevin Ushey [aut],
JJ Allaire [aut],
Samuel Macedo [ctb],
Hossein Falaki [aut],
Lu Wang [aut],
Andy Zhang [aut],
Yitao Li [aut] ,
Jozef Hajnala [ctb],
Maciej Szymkiewicz [ctb] ,
Wil Davis [ctb],
Edgar Ruiz [au [...truncated...]
Maintainer: Edgar Ruiz <edgar@rstudio.com>
Diff between sparklyr versions 1.9.2 dated 2025-10-05 and 1.9.3 dated 2025-11-19
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ R/install_spark.R | 2 +- R/ml_persistence.R | 40 ++++++++++++++++++++++++++++++++-------- build/partial.rdb |binary inst/extdata/versions-next.json | 4 ++-- inst/extdata/versions.json | 2 +- 8 files changed, 51 insertions(+), 23 deletions(-)
Title: Tools for Analyzing QTL Experiments
Description: Analysis of experimental crosses to identify genes
(called quantitative trait loci, QTLs) contributing to variation in
quantitative traits.
Broman et al. (2003) <doi:10.1093/bioinformatics/btg112>.
Author: Karl W Broman [aut, cre] ,
Hao Wu [aut],
Gary Churchill [ctb] ,
Saunak Sen [ctb] ,
Danny Arends [ctb] ,
Robert Corty [ctb],
Timothee Flutre [ctb],
Ritsert Jansen [ctb],
Pjotr Prins [ctb] ,
Lars Ronnegard [ctb],
Rohan Shah [ctb],
Laura Shannon [ctb],
[...truncated...]
Maintainer: Karl W Broman <broman@wisc.edu>
Diff between qtl versions 1.70 dated 2024-08-21 and 1.72 dated 2025-11-19
DESCRIPTION | 21 +++++++++++---------- MD5 | 42 +++++++++++++++++++++--------------------- NEWS.md | 9 +++++++++ R/cim.R | 9 ++++++--- build/vignette.rds |binary data/badorder.RData |binary data/bristle3.RData |binary data/bristleX.RData |binary data/fake.4way.RData |binary data/fake.bc.RData |binary data/fake.f2.RData |binary data/hyper.RData |binary data/listeria.RData |binary data/locations.RData |binary data/map10.RData |binary data/mapthis.RData |binary data/multitrait.RData |binary inst/INSTALL_ME.txt | 16 ++++++++-------- inst/doc/bcsft.pdf |binary inst/doc/rqtltour.pdf |binary inst/doc/rqtltour2.pdf |binary man/cim.Rd | 9 ++++----- 22 files changed, 59 insertions(+), 47 deletions(-)
Title: Calculate and Track Dates and Medications During Pregnancy
Description: Provides functionality for calculating pregnancy-related dates and
tracking medications during pregnancy and fertility treatment. Calculates
due dates from various starting points including last menstrual period and
IVF (In Vitro Fertilisation) transfer dates, determines pregnancy progress
on any given date, and identifies when specific pregnancy weeks are
reached. Includes medication tracking capabilities for individuals
undergoing fertility treatment or during pregnancy, allowing users to
monitor remaining doses and quantities needed over specified time periods.
Designed for those tracking their own pregnancies or supporting partners
through the process, making use of options to personalise output messages.
For details on due date calculations, see
<https://www.acog.org/clinical/clinical-guidance/committee-opinion/articles/2017/05/methods-for-estimating-the-due-date>.
Author: Ella Kaye [aut, cre, cph]
Maintainer: Ella Kaye <ella.kaye@gmail.com>
Diff between pregnancy versions 0.1.1 dated 2025-09-14 and 0.2.0 dated 2025-11-19
DESCRIPTION | 6 MD5 | 27 ++-- NEWS.md | 8 + R/data.R | 10 + R/meds.R | 18 ++ README.md | 77 +++++++----- data/medications_simple.rda |only inst/doc/pregnancy.R | 34 +++-- inst/doc/pregnancy.Rmd | 53 +++++--- inst/doc/pregnancy.html | 230 ++++++++++++++++++++------------------ man/medications.Rd | 9 + man/pregnancy-package.Rd | 2 tests/testthat/_snaps/due_date.md |only tests/testthat/_snaps/utils.md |only tests/testthat/test-meds.R | 15 ++ vignettes/pregnancy.Rmd | 53 +++++--- 16 files changed, 332 insertions(+), 210 deletions(-)
Title: NHDPlus Tools
Description: Tools for traversing and working with National Hydrography Dataset Plus (NHDPlus) data. All methods implemented in 'nhdplusTools' are available in the NHDPlus documentation available from the US Environmental Protection Agency <https://www.epa.gov/waterdata/basic-information>.
Author: David Blodgett [aut, cre] ,
Mike Johnson [aut] ,
Marc Weber [ctb] ,
Josh Erickson [ctb],
Lauren Koenig [ctb]
Maintainer: David Blodgett <dblodgett@usgs.gov>
Diff between nhdplusTools versions 1.3.2 dated 2025-06-10 and 1.4.0 dated 2025-11-19
nhdplusTools-1.3.2/nhdplusTools/R/geoserver_tools.R |only nhdplusTools-1.3.2/nhdplusTools/man/query_usgs_geoserver.Rd |only nhdplusTools-1.4.0/nhdplusTools/DESCRIPTION | 8 nhdplusTools-1.4.0/nhdplusTools/MD5 | 84 nhdplusTools-1.4.0/nhdplusTools/NAMESPACE | 2 nhdplusTools-1.4.0/nhdplusTools/NEWS.md | 747 +- nhdplusTools-1.4.0/nhdplusTools/R/A_nhdplusTools.R | 46 nhdplusTools-1.4.0/nhdplusTools/R/arcrest_tools.R | 518 - nhdplusTools-1.4.0/nhdplusTools/R/discover_nhdplus.R | 12 nhdplusTools-1.4.0/nhdplusTools/R/downloading_tools.R | 749 +- nhdplusTools-1.4.0/nhdplusTools/R/get_geoconnex.R | 269 nhdplusTools-1.4.0/nhdplusTools/R/get_hydro.R | 40 nhdplusTools-1.4.0/nhdplusTools/R/get_nhdplus.R | 33 nhdplusTools-1.4.0/nhdplusTools/R/oafeat_tools.R |only nhdplusTools-1.4.0/nhdplusTools/R/subset_nhdplus.R | 33 nhdplusTools-1.4.0/nhdplusTools/build/partial.rdb |binary nhdplusTools-1.4.0/nhdplusTools/build/vignette.rds |binary nhdplusTools-1.4.0/nhdplusTools/inst/doc/get_3dhp_data.html | 96 nhdplusTools-1.4.0/nhdplusTools/inst/doc/get_data_overview.html | 3465 ---------- nhdplusTools-1.4.0/nhdplusTools/inst/doc/indexing.html | 5 nhdplusTools-1.4.0/nhdplusTools/inst/doc/nhdplusTools.Rmd | 2 nhdplusTools-1.4.0/nhdplusTools/inst/doc/nhdplusTools.html | 3090 -------- nhdplusTools-1.4.0/nhdplusTools/inst/doc/nhdplushr.html | 20 nhdplusTools-1.4.0/nhdplusTools/inst/doc/plot_nhdplus.R | 2 nhdplusTools-1.4.0/nhdplusTools/inst/doc/plot_nhdplus.Rmd | 502 - nhdplusTools-1.4.0/nhdplusTools/inst/doc/plot_nhdplus.html | 192 nhdplusTools-1.4.0/nhdplusTools/man/download_nhdplusv2.Rd | 2 nhdplusTools-1.4.0/nhdplusTools/man/get_gagesII.Rd | 4 nhdplusTools-1.4.0/nhdplusTools/man/get_huc.Rd | 6 nhdplusTools-1.4.0/nhdplusTools/man/get_nhdarea.Rd | 4 nhdplusTools-1.4.0/nhdplusTools/man/get_nhdplus.Rd | 138 nhdplusTools-1.4.0/nhdplusTools/man/get_nwis.Rd | 76 nhdplusTools-1.4.0/nhdplusTools/man/get_waterbodies.Rd | 4 nhdplusTools-1.4.0/nhdplusTools/man/query_usgs_oafeat.Rd |only nhdplusTools-1.4.0/nhdplusTools/tests/testthat/test_01_get_nldi.R | 594 - nhdplusTools-1.4.0/nhdplusTools/tests/testthat/test_02_subset.R | 436 - nhdplusTools-1.4.0/nhdplusTools/tests/testthat/test_02_subset_extras.R | 370 - nhdplusTools-1.4.0/nhdplusTools/tests/testthat/test_03_get_functions.R | 47 nhdplusTools-1.4.0/nhdplusTools/tests/testthat/test_arcrest.R | 43 nhdplusTools-1.4.0/nhdplusTools/tests/testthat/test_calc_network.R | 212 nhdplusTools-1.4.0/nhdplusTools/tests/testthat/test_get_nhdplus.R | 146 nhdplusTools-1.4.0/nhdplusTools/tests/testthat/test_get_nhdplushr.R | 468 - nhdplusTools-1.4.0/nhdplusTools/tests/testthat/test_get_path.R | 308 nhdplusTools-1.4.0/nhdplusTools/vignettes/nhdplusTools.Rmd | 2 nhdplusTools-1.4.0/nhdplusTools/vignettes/plot_nhdplus.Rmd | 502 - 45 files changed, 3566 insertions(+), 9711 deletions(-)
Title: Tools for Data Analysis in Experimental Agriculture
Description: Methods to analyse experimental agriculture data,
from data synthesis to model selection and visualisation.
The package is named after W.S. Gosset aka ‘Student’, a pioneer
of modern statistics in small sample experimental design and analysis.
Author: Kaue de Sousa [aut, cre] ,
Jacob van Etten [aut] ,
David Brown [aut] ,
Jonathan Steinke [aut] ,
Joost van Heerwaarden [aut]
Maintainer: Kaue de Sousa <desousa.kaue@gmail.com>
Diff between gosset versions 1.4 dated 2024-12-05 and 1.5.1 dated 2025-11-19
DESCRIPTION | 24 ++--- MD5 | 26 +++-- NAMESPACE | 4 NEWS.md | 30 ++++++ R/preference_index.R |only R/rank_numeric.R | 11 ++ R/rank_tricot2.R |only inst/doc/vignette-1-trait-prioritization-and-crop-performance.Rmd | 11 +- inst/doc/vignette-1-trait-prioritization-and-crop-performance.html | 46 ++++------ man/preference_index.Rd |only man/rank_numeric.Rd | 1 man/rank_tricot.Rd | 1 man/rank_tricot2.Rd |only man/set_binomialfreq.Rd | 1 man/set_paircomp.Rd | 1 vignettes/vignette-1-trait-prioritization-and-crop-performance.Rmd | 11 +- 16 files changed, 109 insertions(+), 58 deletions(-)
Title: Count Transformation Models
Description: Count transformation models featuring
parameters interpretable as discrete hazard ratios, odds ratios,
reverse-time discrete hazard ratios, or transformed expectations.
An appropriate data transformation for a count outcome and
regression coefficients are simultaneously estimated by maximising
the exact discrete log-likelihood using the computational framework
provided in package 'mlt', technical details are given in
Siegfried & Hothorn (2020) <DOI:10.1111/2041-210X.13383>.
The package also contains an experimental implementation of
multivariate count transformation models with an application
to multi-species distribution models <DOI:10.48550/arXiv.2201.13095>.
Author: Sandra Siegfried [aut, cre] ,
Luisa Barbanti [aut] ,
Torsten Hothorn [aut]
Maintainer: Sandra Siegfried <sandra.siegfried@alumni.uzh.ch>
Diff between cotram versions 0.5-3 dated 2025-10-08 and 0.6-0 dated 2025-11-19
DESCRIPTION | 16 ++++++++-------- MD5 | 20 +++++++++++++------- NAMESPACE | 5 +---- R/mcotram.R |only build/partial.rdb |binary build/vignette.rds |binary demo |only inst/NEWS.Rd | 10 +++++++++- inst/doc/cotram.pdf |binary man/mcotram.Rd |only tests/confband-Ex.Rout.save |only vignettes/defs.tex | 2 +- 12 files changed, 32 insertions(+), 21 deletions(-)
Title: Artificial Intelligence for Education
Description: In social and educational settings, the use of Artificial
Intelligence (AI) is a challenging task. Relevant data is often only
available in handwritten forms, or the use of data is restricted by
privacy policies. This often leads to small data sets. Furthermore, in
the educational and social sciences, data is often unbalanced in terms
of frequencies. To support educators as well as educational and social
researchers in using the potentials of AI for their work, this package
provides a unified interface for neural nets in 'PyTorch' to deal with
natural language problems. In addition, the package ships with a shiny
app, providing a graphical user interface. This allows the usage of
AI for people without skills in writing python/R scripts. The tools
integrate existing mathematical and statistical methods for dealing
with small data sets via pseudo-labeling (e.g. Cascante-Bonilla et al.
(2020) <doi:10.48550/arXiv.2001.06001>) and imbalanced data via the
creation of synthetic cases [...truncated...]
Author: Berding Florian [aut, cre] ,
Tykhonova Yuliia [aut] ,
Pargmann Julia [ctb] ,
Leube Anna [ctb] ,
Riebenbauer Elisabeth [ctb] ,
Rebmann Karin [ctb],
Slopinski Andreas [ctb]
Maintainer: Berding Florian <florian.berding@uni-hamburg.de>
Diff between aifeducation versions 1.1.2 dated 2025-10-14 and 1.1.3 dated 2025-11-19
DESCRIPTION | 8 MD5 | 264 +-- NAMESPACE | 2 NEWS.md | 43 R/Studio_Classifier_Create.R | 6 R/Studio_Error_Checks.R | 6 R/Studio_License.R | 1 R/Studio_ProgressModal.R | 1 R/Studio_Tabs_Classifier_Predict.R | 1 R/Studio_Tabs_DM_DataSetEditor.R | 2 R/Studio_Tabs_DM_TableEditor.R | 1 R/Studio_Tabs_Fill_Mask.R | 2 R/Studio_Tabs_Sustainability.R | 78 R/Studio_Tabs_Training.R | 43 R/Studio_TextEmbeddingModel_Create.R | 126 + R/def_DocumentationDesc.R | 7 R/def_ParameterDefinitions.R | 671 ++++++-- R/install_and_config.R | 24 R/obj_AIFEBaseModel.R | 2 R/obj_BaseModelBert.R | 4 R/obj_BaseModelCore.R | 158 + R/obj_BaseModelDebertaV2.R | 4 R/obj_BaseModelFunnel.R | 11 R/obj_BaseModelMPNet.R | 44 R/obj_BaseModelModernBert.R | 20 R/obj_BaseModelRoberta.R | 4 R/obj_ClassifiersBasedOnTextEmbeddings.R | 35 R/obj_DataManager.R | 12 R/obj_FeatureExtractor.R | 27 R/obj_LargeDataSetBase.R | 1 R/obj_ModelsBasedOnTextEmbeddings.R | 205 ++ R/obj_TEClassifierParallel.R | 17 R/obj_TEClassifierParallelPrototype.R | 16 R/obj_TEClassifierProtoNet.R | 2 R/obj_TEClassifierRegular.R | 2 R/obj_TEClassifierSequential.R | 17 R/obj_TEClassifierSequentialPrototype.R | 16 R/obj_TEClassifiersBasedOnProtoNet.R | 57 R/obj_TEClassifiersBasedOnRegular.R | 2 R/obj_TextEmbeddingModel.R | 5 R/obj_Tokenizer.R | 7 R/onLoad.R | 2 R/saving_and_loading.R | 4 R/utils_Studio.R | 1 R/utils_general.R | 1 R/utils_memory_cache.R | 60 R/utils_plot.R |only R/utils_test_that.R | 142 + R/utils_update_models.R | 3 README.md | 10 inst/doc/aifeducation.R | 2 inst/doc/aifeducation.Rmd | 2 inst/doc/aifeducation.html | 18 inst/python/pytorch_autoencoder.py | 33 inst/python/pytorch_classifier_models.py | 98 + inst/python/pytorch_cls_training_loops.py | 71 inst/python/pytorch_distance_fun.py |only inst/python/pytorch_layers.py | 179 +- inst/python/pytorch_stack_layers.py | 5 man/BaseModelBert.Rd | 20 man/BaseModelCore.Rd | 112 - man/BaseModelDebertaV2.Rd | 20 man/BaseModelFunnel.Rd | 40 man/BaseModelMPNet.Rd | 71 man/BaseModelModernBert.Rd | 26 man/BaseModelRoberta.Rd | 20 man/BaseModelsIndex.Rd | 1 man/ClassifiersBasedOnTextEmbeddings.Rd | 24 man/DataManagerClassifier.Rd | 12 man/DataSetsIndex.Rd | 1 man/EmbeddedText.Rd | 2 man/HuggingFaceTokenizer.Rd | 2 man/LargeDataSetForTextEmbeddings.Rd | 2 man/ModelsBasedOnTextEmbeddings.Rd | 21 man/TEClassifierParallel.Rd | 40 man/TEClassifierParallelPrototype.Rd | 44 man/TEClassifierProtoNet.Rd | 22 man/TEClassifierRegular.Rd | 20 man/TEClassifierSequential.Rd | 42 man/TEClassifierSequentialPrototype.Rd | 46 man/TEClassifiersBasedOnProtoNet.Rd | 46 man/TEClassifiersBasedOnRegular.Rd | 34 man/TEFeatureExtractor.Rd | 35 man/TextEmbeddingModel.Rd | 26 man/TokenizerBase.Rd | 8 man/TokenizerIndex.Rd | 1 man/WordPieceTokenizer.Rd | 6 man/calc_tokenizer_statistics.Rd | 2 man/check_adjust_n_samples_on_CI.Rd | 1 man/doc_formula.Rd |only man/generate_args_for_tests.Rd | 7 man/generate_embeddings.Rd | 1 man/generate_tensors.Rd | 1 man/get_TEClassifiers_class_names.Rd | 1 man/get_called_args.Rd | 1 man/get_current_args_for_print.Rd | 1 man/get_depr_obj_names.Rd | 1 man/get_fixed_test_tensor.Rd | 1 man/get_magnitude_values.Rd | 1 man/get_n_chunks.Rd | 2 man/get_param_def.Rd | 1 man/get_param_dict.Rd | 1 man/get_param_doc_desc.Rd | 1 man/get_test_data_for_classifiers.Rd | 1 man/inspect_tmp_dir.Rd |only man/install_py_modules.Rd | 10 man/monitor_test_time_on_CI.Rd |only man/random_bool_on_CI.Rd | 3 tests/testthat/test-00_01_generating_test_data.R | 9 tests/testthat/test-00_02_setup_Classifiers.R | 10 tests/testthat/test-01_01_install_and_config.R | 8 tests/testthat/test-01_02_Performance_Measures.R | 9 tests/testthat/test-01_03_R_utils.R | 109 + tests/testthat/test-01_04_R_and_Python_utils.R | 9 tests/testthat/test-01_05_KNNOR.R | 9 tests/testthat/test-01_06_logging.R | 9 tests/testthat/test-01_07_DataCollator.R | 9 tests/testthat/test-02_01_pytorch_loss_fcts.R | 9 tests/testthat/test-02_02_pytorch_layers.R | 202 +- tests/testthat/test-02_03_pytorch_stack_layers.R | 119 - tests/testthat/test-02_04_other_fcts.R |only tests/testthat/test-02_05_tokenizer.R | 18 tests/testthat/test-02_06_BaseModels.R | 50 tests/testthat/test-02_07_BaseModels_from_hf.R | 20 tests/testthat/test-03_01_LargeDataSetForTexts.R | 9 tests/testthat/test-03_02_LargeDataSetForTextEmbeddings.R | 9 tests/testthat/test-03_03_EmbeddedText.R | 9 tests/testthat/test-03_04_DataManager.R | 9 tests/testthat/test-03_05_FeatureExtractor.R | 9 tests/testthat/test-03_06_TextEmbeddingModels.R | 1111 +++++++------ tests/testthat/test-03_08_TEClassifiers_core.R | 1118 +++++--------- tests/testthat/test-03_09_TEClassifiersProtoNet_old.R | 40 tests/testthat/test-03_09_TEClassifiersPrototype.R | 500 ++---- tests/testthat/test-04_01_LoadOldModels.R | 9 tests/testthat/test-99_clean_tmp_directories.R | 9 vignettes/aifeducation.Rmd | 2 136 files changed, 4101 insertions(+), 2698 deletions(-)
Title: ANSI Control Sequence Aware String Functions
Description: Counterparts to R string manipulation functions that account for
the effects of ANSI text formatting control sequences.
Author: Brodie Gaslam [aut, cre],
Elliott Sales De Andrade [ctb],
R Core Team [cph] ,
Michael Chirico [ctb] ,
Unicode, Inc. [cph, dtc]
Maintainer: Brodie Gaslam <brodie.gaslam@yahoo.com>
Diff between fansi versions 1.0.6 dated 2023-12-07 and 1.0.7 dated 2025-11-19
fansi-1.0.6/fansi/src/rnchar.c |only fansi-1.0.7/fansi/DESCRIPTION | 24 +++-- fansi-1.0.7/fansi/MD5 | 75 ++++++++-------- fansi-1.0.7/fansi/NAMESPACE | 1 fansi-1.0.7/fansi/NEWS.md | 7 + fansi-1.0.7/fansi/R/fansi-package.R | 26 +---- fansi-1.0.7/fansi/R/misc.R | 12 ++ fansi-1.0.7/fansi/R/substr2.R | 18 +-- fansi-1.0.7/fansi/README.md | 9 + fansi-1.0.7/fansi/build/vignette.rds |binary fansi-1.0.7/fansi/inst/doc/sgr-in-rmd.R | 2 fansi-1.0.7/fansi/inst/doc/sgr-in-rmd.html | 5 - fansi-1.0.7/fansi/man/fansi.Rd | 37 ++++--- fansi-1.0.7/fansi/man/fansi_unicode_version.Rd |only fansi-1.0.7/fansi/man/nchar_ctl.Rd | 18 +-- fansi-1.0.7/fansi/man/nchar_sgr.Rd | 4 fansi-1.0.7/fansi/man/state_at_end.Rd | 10 +- fansi-1.0.7/fansi/man/strsplit_ctl.Rd | 10 +- fansi-1.0.7/fansi/man/strtrim_ctl.Rd | 2 fansi-1.0.7/fansi/man/strtrim_sgr.Rd | 2 fansi-1.0.7/fansi/man/strwrap_ctl.Rd | 14 +- fansi-1.0.7/fansi/man/substr_ctl.Rd | 18 +-- fansi-1.0.7/fansi/man/substr_sgr.Rd | 4 fansi-1.0.7/fansi/man/trimws_ctl.Rd | 12 +- fansi-1.0.7/fansi/src/fansi-ext.h | 2 fansi-1.0.7/fansi/src/fansi-struct.h | 2 fansi-1.0.7/fansi/src/fansi.h | 12 -- fansi-1.0.7/fansi/src/init.c | 1 fansi-1.0.7/fansi/src/read.c | 31 ++---- fansi-1.0.7/fansi/src/state.c | 5 - fansi-1.0.7/fansi/src/utf8.c | 4 fansi-1.0.7/fansi/src/width.c |only fansi-1.0.7/fansi/src/wrap.c | 2 fansi-1.0.7/fansi/src/write.c | 1 fansi-1.0.7/fansi/tests/run.R | 6 + fansi-1.0.7/fansi/tests/special/cps.R |only fansi-1.0.7/fansi/tests/special/cps.unitizer |only fansi-1.0.7/fansi/tests/special/emo-graph.R | 15 +++ fansi-1.0.7/fansi/tests/special/utf8.R | 15 +++ fansi-1.0.7/fansi/tests/unitizer/misc.R | 3 fansi-1.0.7/fansi/tests/unitizer/misc.unitizer/data.rds |binary 41 files changed, 223 insertions(+), 186 deletions(-)
Title: Reconstruction of Daily Data - Precipitation
Description: Applies quality control to daily precipitation observations;
reconstructs the original series by estimating precipitation in missing values; and
creates gridded datasets of daily precipitation.
Author: Roberto Serrano-Notivoli [aut, cre] ,
Adrian Huerta [aut] ,
Abel Centella [ctb]
Maintainer: Roberto Serrano-Notivoli <roberto.serrano@unizar.es>
Diff between reddPrec versions 3.0.1 dated 2025-09-10 and 3.0.2 dated 2025-11-19
DESCRIPTION | 8 ++++---- MD5 | 12 ++++++------ NAMESPACE | 2 +- R/eqc_Ts.R | 1 + R/hmg_Ts.R | 2 +- R/hmg_cleaning_trend_ar1.R | 7 ++++--- R/stand_qq.R | 2 +- 7 files changed, 18 insertions(+), 16 deletions(-)
Title: Cluster Extension for 'mlr3'
Description: Extends the 'mlr3' package with cluster analysis.
Author: Maximilian Muecke [aut, cre] ,
Damir Pulatov [aut],
Michel Lang [aut] ,
Marc Becker [ctb]
Maintainer: Maximilian Muecke <muecke.maximilian@gmail.com>
Diff between mlr3cluster versions 0.1.11 dated 2025-02-18 and 0.1.12 dated 2025-11-19
DESCRIPTION | 15 ++- MD5 | 129 ++++++++++++++++----------------- NEWS.md | 58 ++++++++------ R/LearnerClust.R | 1 R/LearnerClustAffinityPropagation.R | 27 +++--- R/LearnerClustAgnes.R | 11 +- R/LearnerClustBICO.R | 9 +- R/LearnerClustBIRCH.R | 11 +- R/LearnerClustCMeans.R | 9 +- R/LearnerClustCobweb.R | 1 R/LearnerClustDBSCAN.R | 9 +- R/LearnerClustDBSCANfpc.R | 11 +- R/LearnerClustDiana.R | 3 R/LearnerClustEM.R | 3 R/LearnerClustFanny.R | 5 - R/LearnerClustFarthestFirst.R | 1 R/LearnerClustFeatureless.R | 3 R/LearnerClustHDBSCAN.R | 6 + R/LearnerClustHclust.R | 6 + R/LearnerClustKKMeans.R | 9 +- R/LearnerClustKMeans.R | 6 - R/LearnerClustMclust.R | 1 R/LearnerClustMeanShift.R | 1 R/LearnerClustMiniBatchKMeans.R | 3 R/LearnerClustOPTICS.R | 7 + R/LearnerClustPAM.R | 9 +- R/LearnerClustSimpleKMeans.R | 33 ++++---- R/LearnerClustXMeans.R | 33 ++++---- R/MeasureClust.R | 15 +++ R/MeasureClustInternal.R | 2 R/as_prediction_clust.R | 4 - R/as_task_clust.R | 5 - R/bibentries.R | 6 + R/zzz.R | 12 ++- README.md | 16 +++- build/partial.rdb |binary man/LearnerClust.Rd | 2 man/TaskClust.Rd | 1 man/figures |only man/mlr_learners_clust.MBatchKMeans.Rd | 27 +++++- man/mlr_learners_clust.SimpleKMeans.Rd | 29 +++++-- man/mlr_learners_clust.agnes.Rd | 27 +++++- man/mlr_learners_clust.ap.Rd | 20 ++--- man/mlr_learners_clust.bico.Rd | 27 +++++- man/mlr_learners_clust.birch.Rd | 14 +-- man/mlr_learners_clust.cmeans.Rd | 27 +++++- man/mlr_learners_clust.cobweb.Rd | 27 +++++- man/mlr_learners_clust.dbscan.Rd | 16 ++-- man/mlr_learners_clust.dbscan_fpc.Rd | 16 ++-- man/mlr_learners_clust.diana.Rd | 27 +++++- man/mlr_learners_clust.em.Rd | 27 +++++- man/mlr_learners_clust.fanny.Rd | 27 +++++- man/mlr_learners_clust.featureless.Rd | 27 +++++- man/mlr_learners_clust.ff.Rd | 27 +++++- man/mlr_learners_clust.hclust.Rd | 29 +++++-- man/mlr_learners_clust.hdbscan.Rd | 28 +++++-- man/mlr_learners_clust.kkmeans.Rd | 27 +++++- man/mlr_learners_clust.kmeans.Rd | 29 +++++-- man/mlr_learners_clust.mclust.Rd | 29 +++++-- man/mlr_learners_clust.meanshift.Rd | 27 +++++- man/mlr_learners_clust.optics.Rd | 14 +-- man/mlr_learners_clust.pam.Rd | 29 +++++-- man/mlr_learners_clust.xmeans.Rd | 14 +-- tests/testthat/helper_expectations.R | 9 -- tests/testthat/helper_mlr3.R | 8 -- tests/testthat/test_TaskClust.R | 4 - 66 files changed, 706 insertions(+), 389 deletions(-)
Title: Breeding-Related Mixed-Effects Models
Description: Fit relationship-based and customized mixed-effects models with complex variance-covariance structures using the 'lme4' machinery. The core computational algorithms are implemented using the
'Eigen' 'C++' library for numerical linear algebra and 'RcppEigen' 'glue'.
Author: Giovanny Covarrubias-Pazaran [aut, cre]
Maintainer: Giovanny Covarrubias-Pazaran <cova_ruber@live.com.mx>
Diff between lme4breeding versions 1.0.90 dated 2025-10-18 and 1.1.0 dated 2025-11-19
lme4breeding-1.0.90/lme4breeding/R/lmebreed.R |only lme4breeding-1.0.90/lme4breeding/R/plottingFuns.R |only lme4breeding-1.0.90/lme4breeding/data |only lme4breeding-1.0.90/lme4breeding/man/A.mat.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_augment.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_big.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_btdata.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_cornhybrids.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_cpdata.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_example.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_expdesigns.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_fulldiallel.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_gryphon.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_h2.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_halfdiallel.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_ige.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_legendre.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_mohring.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_polyploid.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_rice.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_sleepstudy.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_technow.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_wheat.Rd |only lme4breeding-1.0.90/lme4breeding/man/DT_yatesoats.Rd |only lme4breeding-1.0.90/lme4breeding/man/I.mat.Rd |only lme4breeding-1.0.90/lme4breeding/man/add.diallel.vars.Rd |only lme4breeding-1.0.90/lme4breeding/man/atcg1234.Rd |only lme4breeding-1.0.90/lme4breeding/man/bbasis.Rd |only lme4breeding-1.0.90/lme4breeding/man/build.HMM.Rd |only lme4breeding-1.0.90/lme4breeding/man/getCi.Rd |only lme4breeding-1.0.90/lme4breeding/man/impute.Rd |only lme4breeding-1.0.90/lme4breeding/man/leg.Rd |only lme4breeding-1.0.90/lme4breeding/man/lmebreed-class.Rd |only lme4breeding-1.0.90/lme4breeding/man/lmebreed.Rd |only lme4breeding-1.0.90/lme4breeding/man/overlay.Rd |only lme4breeding-1.0.90/lme4breeding/man/redmm.Rd |only lme4breeding-1.0.90/lme4breeding/man/rrm.Rd |only lme4breeding-1.0.90/lme4breeding/man/simage.Rd |only lme4breeding-1.0.90/lme4breeding/man/simage2.Rd |only lme4breeding-1.0.90/lme4breeding/man/tps.Rd |only lme4breeding-1.1.0/lme4breeding/ChangeLog | 9 lme4breeding-1.1.0/lme4breeding/DESCRIPTION | 12 lme4breeding-1.1.0/lme4breeding/MD5 | 117 lme4breeding-1.1.0/lme4breeding/NAMESPACE | 16 lme4breeding-1.1.0/lme4breeding/R/AllClass.R | 26 lme4breeding-1.1.0/lme4breeding/R/lmeb.R |only lme4breeding-1.1.0/lme4breeding/R/predict.R |only lme4breeding-1.1.0/lme4breeding/R/utils.R | 1446 ---------- lme4breeding-1.1.0/lme4breeding/README.md |only lme4breeding-1.1.0/lme4breeding/inst/doc/lmebreed.gxe.R | 54 lme4breeding-1.1.0/lme4breeding/inst/doc/lmebreed.gxe.Rmd | 69 lme4breeding-1.1.0/lme4breeding/inst/doc/lmebreed.gxe.html | 560 ++- lme4breeding-1.1.0/lme4breeding/inst/doc/lmebreed.qg.R | 83 lme4breeding-1.1.0/lme4breeding/inst/doc/lmebreed.qg.Rmd | 87 lme4breeding-1.1.0/lme4breeding/inst/doc/lmebreed.qg.html | 139 lme4breeding-1.1.0/lme4breeding/inst/doc/lmebreed.summaries.R | 8 lme4breeding-1.1.0/lme4breeding/inst/doc/lmebreed.summaries.Rmd | 8 lme4breeding-1.1.0/lme4breeding/inst/doc/lmebreed.summaries.html | 12 lme4breeding-1.1.0/lme4breeding/man/Dtable.Rd | 10 lme4breeding-1.1.0/lme4breeding/man/adjBeta.Rd | 6 lme4breeding-1.1.0/lme4breeding/man/balanceData.Rd | 5 lme4breeding-1.1.0/lme4breeding/man/condVarRotated.Rd |only lme4breeding-1.1.0/lme4breeding/man/getMME.Rd | 22 lme4breeding-1.1.0/lme4breeding/man/lme4breeding-package.Rd | 47 lme4breeding-1.1.0/lme4breeding/man/lmeb-class.Rd |only lme4breeding-1.1.0/lme4breeding/man/lmeb.Rd |only lme4breeding-1.1.0/lme4breeding/man/mkMmeIndex.Rd | 12 lme4breeding-1.1.0/lme4breeding/man/predict.lmeb.Rd |only lme4breeding-1.1.0/lme4breeding/man/smm.Rd | 4 lme4breeding-1.1.0/lme4breeding/man/umat.Rd | 6 lme4breeding-1.1.0/lme4breeding/vignettes/lmebreed.gxe.Rmd | 69 lme4breeding-1.1.0/lme4breeding/vignettes/lmebreed.qg.Rmd | 87 lme4breeding-1.1.0/lme4breeding/vignettes/lmebreed.summaries.Rmd | 8 73 files changed, 866 insertions(+), 2056 deletions(-)
Title: Create Compact Hash Digests of R Objects
Description: Implementation of a function 'digest()' for the creation of hash
digests of arbitrary R objects (using the 'md5', 'sha-1', 'sha-256', 'crc32',
'xxhash', 'murmurhash', 'spookyhash', 'blake3', 'crc32c', 'xxh3_64', and 'xxh3_128'
algorithms) permitting easy comparison of R language objects, as well as functions
such as 'hmac()' to create hash-based message authentication code. Please note that
this package is not meant to be deployed for cryptographic purposes for which more
comprehensive (and widely tested) libraries such as 'OpenSSL' should be used.
Author: Dirk Eddelbuettel [aut, cre] ,
Antoine Lucas [ctb] ,
Jarek Tuszynski [ctb],
Henrik Bengtsson [ctb] ,
Simon Urbanek [ctb] ,
Mario Frasca [ctb],
Bryan Lewis [ctb],
Murray Stokely [ctb],
Hannes Muehleisen [ctb] ,
Duncan Murdoch [ctb],
Jim Hester [ctb] , [...truncated...]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between digest versions 0.6.38 dated 2025-11-12 and 0.6.39 dated 2025-11-19
ChangeLog | 14 ++++++++++++++ DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/vdigest.R | 6 ++---- src/SpookyV2.cpp | 2 +- 5 files changed, 25 insertions(+), 13 deletions(-)
Title: DIF and DDF Detection by Non-Linear Regression Models
Description: Detection of differential item functioning (DIF) among dichotomously scored items and differential distractor functioning (DDF) among unscored items with non-linear regression procedures based on generalized logistic regression models (Hladka & Martinkova, 2020, <doi:10.32614/RJ-2020-014>).
Author: Adela Hladka [aut, cre],
Patricia Martinkova [aut],
Karel Zvara [ctb]
Maintainer: Adela Hladka <hladka@cs.cas.cz>
Diff between difNLR versions 1.5.1-4 dated 2025-06-30 and 1.5.2-2 dated 2025-11-19
DESCRIPTION | 10 MD5 | 140 NEWS.md | 35 R/MLR.R | 18 R/NLR.R | 39 R/ORD.R | 31 R/ddfMLR.R | 256 - R/difNLR-package.R | 4 R/difNLR.R | 715 +- R/difORD.R | 522 -- R/private.R | 194 R/startNLR.R | 87 README.md | 4 build/partial.rdb |binary man/ddfMLR.Rd | 51 man/difNLR-package.Rd | 4 man/difNLR.Rd | 52 man/difORD.Rd | 53 tests/testthat/_snaps/ddfMLR.md | 443 + tests/testthat/_snaps/difNLR.md | 3551 -------------- tests/testthat/_snaps/difNLR/difnlr-fit1-plot3.svg | 78 tests/testthat/_snaps/difNLR/difnlr-fit1-plot4.svg | 4 tests/testthat/_snaps/difNLR/difnlr-fit7b-plot1.svg |only tests/testthat/_snaps/difNLR/difnlr-fit7c-plot1.svg |only tests/testthat/_snaps/difNLR/difnlr-fit7d-plot1.svg |only tests/testthat/_snaps/difORD.md | 498 + tests/testthat/_snaps/difORD/diford-rjournal-plot5.svg |only tests/testthat/_snaps/difORD/diford-rjournal-plot6.svg |only tests/testthat/_snaps/difORD/diford-rjournal-plot7.svg |only tests/testthat/fixtures/ddfMLR_RJournal_fit1.rds |binary tests/testthat/fixtures/ddfMLR_fit1.rds |binary tests/testthat/fixtures/ddfMLR_fit2.rds |binary tests/testthat/fixtures/ddfMLR_fit3.rds |binary tests/testthat/fixtures/ddfMLR_fit4.rds |binary tests/testthat/fixtures/ddfMLR_fit5.rds |binary tests/testthat/fixtures/ddfMLR_fit6a.rds |only tests/testthat/fixtures/ddfMLR_fit6b.rds |only tests/testthat/fixtures/ddfMLR_fit6c.rds |only tests/testthat/fixtures/ddfMLR_fit7.rds |only tests/testthat/fixtures/ddfMLR_fit8.rds |only tests/testthat/fixtures/difNLR_RJournal_fit1.rds |binary tests/testthat/fixtures/difNLR_RJournal_fit12b.rds |binary tests/testthat/fixtures/difNLR_fit1.rds |binary tests/testthat/fixtures/difNLR_fit10.rds |binary tests/testthat/fixtures/difNLR_fit11.rds |binary tests/testthat/fixtures/difNLR_fit13.rds |binary tests/testthat/fixtures/difNLR_fit14.rds |binary tests/testthat/fixtures/difNLR_fit1_fitted_item1.rds |only tests/testthat/fixtures/difNLR_fit1_fitted_summary.rds |only tests/testthat/fixtures/difNLR_fit1_predict_item1.rds |only tests/testthat/fixtures/difNLR_fit1_predict_item1_new.rds |only tests/testthat/fixtures/difNLR_fit1_predict_summary.rds |only tests/testthat/fixtures/difNLR_fit1_residuals_item1.rds |only tests/testthat/fixtures/difNLR_fit1_residuals_summary.rds |only tests/testthat/fixtures/difNLR_fit2.rds |binary tests/testthat/fixtures/difNLR_fit3.rds |binary tests/testthat/fixtures/difNLR_fit4.rds |binary tests/testthat/fixtures/difNLR_fit5.rds |binary tests/testthat/fixtures/difNLR_fit6.rds |binary tests/testthat/fixtures/difNLR_fit7a.rds |only tests/testthat/fixtures/difNLR_fit7b.rds |only tests/testthat/fixtures/difNLR_fit7c.rds |only tests/testthat/fixtures/difNLR_fit8.rds |binary tests/testthat/fixtures/difNLR_fit9.rds |binary tests/testthat/fixtures/difORD_RJournal_fit1.rds |binary tests/testthat/fixtures/difORD_RJournal_fit2.rds |binary tests/testthat/fixtures/difORD_fit1.rds |binary tests/testthat/fixtures/difORD_fit2.rds |binary tests/testthat/fixtures/difORD_fit3.rds |binary tests/testthat/fixtures/difORD_fit4.rds |binary tests/testthat/fixtures/difORD_fit5.rds |binary tests/testthat/fixtures/difORD_fit6a.rds |only tests/testthat/fixtures/difORD_fit6b.rds |only tests/testthat/fixtures/difORD_fit6c.rds |only tests/testthat/fixtures/difORD_fit7.rds |binary tests/testthat/fixtures/difORD_fit8.rds |only tests/testthat/fixtures/difORD_fit9.rds |only tests/testthat/test-ddfMLR.R | 111 tests/testthat/test-difNLR.R | 170 tests/testthat/test-difORD.R | 112 tests/testthat/test-estimNLR.R | 14 tests/testthat/test-formulaNLR.R | 3 tests/testthat/test-genNLR.R | 6 tests/testthat/test-startNLR.R | 6 84 files changed, 2696 insertions(+), 4515 deletions(-)
Title: Markov Model for Online Multi-Channel Attribution
Description: Advertisers use a variety of online marketing channels to reach consumers and they want to know the degree each channel contributes to their marketing success. This is called online multi-channel attribution problem. This package contains a probabilistic algorithm for the attribution problem. The model uses a k-order Markov representation to identify structural correlations in the customer journey data. The package also contains three heuristic algorithms (first-touch, last-touch and linear-touch approach) for the same problem. The algorithms are implemented in C++.
Author: Davide Altomare [cre, aut],
David Loris [aut]
Maintainer: Davide Altomare <info@channelattribution.io>
Diff between ChannelAttribution versions 2.2.3 dated 2025-11-17 and 2.2.4 dated 2025-11-19
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/ChannelAttribution.R | 8 ++++---- man/ChannelAttribution-package.Rd | 4 ++-- 4 files changed, 13 insertions(+), 13 deletions(-)
More information about ChannelAttribution at CRAN
Permanent link
Title: Easily Build, Simulate, and Visualise Stock-and-Flow Models
Description: Stock-and-flow models are a computational method from the field of
system dynamics. They represent how systems change over time and are
mathematically equivalent to ordinary differential equations. 'sdbuildR'
(system dynamics builder) provides an intuitive interface for constructing
stock-and-flow models without requiring extensive domain knowledge. Models
can quickly be simulated and revised, supporting iterative development.
'sdbuildR' simulates models in 'R' and 'Julia', where 'Julia' offers unit
support and large-scale ensemble simulations. Additionally, 'sdbuildR' can
import models created in 'Insight Maker' (<https://insightmaker.com/>).
Author: Kyra Caitlin Evers [aut, cre, cph]
Maintainer: Kyra Caitlin Evers <kyra.c.evers@gmail.com>
Diff between sdbuildR versions 1.0.7 dated 2025-11-03 and 1.0.8 dated 2025-11-19
DESCRIPTION | 6 - MD5 | 48 ++++---- NAMESPACE | 1 NEWS.md | 9 + R/assemble_script_julia.R | 69 ++++++----- R/assemble_script_r.R | 88 +++++++------- R/build_xmile.R | 32 +++-- R/custom_func.R | 37 +++++- R/helpers.R | 14 -- R/insightmaker_conv.R | 2 R/insightmaker_conv_eqn.R | 2 R/julia_conv_eqn.R | 54 +++++---- R/julia_setup.R | 3 R/simulate.R | 168 ++++++++++++++++++++++++---- R/units.R | 3 R/visualise.R | 11 + README.md | 4 inst/Project.toml | 54 ++++----- man/logistic.Rd | 32 ++++- tests/testthat/test-assemble_script_julia.R | 13 +- tests/testthat/test-assemble_script_r.R | 12 +- tests/testthat/test-build.R | 16 +- tests/testthat/test-custom_func.R | 10 + tests/testthat/test-ensemble.R | 3 tests/testthat/test-insightmaker_to_sfm.R | 13 +- 25 files changed, 459 insertions(+), 245 deletions(-)
Title: UNHCR Refugee Population Statistics Database
Description: The Refugee Population Statistics Database published by
The Office of The United Nations High Commissioner for Refugees (UNHCR)
contains information about forcibly displaced populations
spanning more than 70 years of statistical activities.
It covers displaced populations such as refugees, asylum-seekers and
internally displaced people, including their demographics.
Stateless people are also included, most of who have never been displaced.
The database also reflects the different types of solutions
for displaced populations such as repatriation or resettlement.
More information on the data and methodology can be found on
the UNHCR Refugee Data Finder <https://www.unhcr.org/refugee-statistics/>.
Author: Hisham Galal [aut],
Ahmadou Dicko [aut],
Janis Kreuder [cre],
UNHCR [cph]
Maintainer: Janis Kreuder <kreuder@unhcr.org>
Diff between refugees versions 2024.12.0 dated 2025-06-14 and 2025.06.0 dated 2025-11-19
DESCRIPTION | 24 +++++++++++++++--------- MD5 | 24 ++++++++++++------------ NEWS.md | 4 ++++ data/asylum_applications.rda |binary data/asylum_decisions.rda |binary data/countries.rda |binary data/demographics.rda |binary data/flows.rda |binary data/idmc.rda |binary data/population.rda |binary data/solutions.rda |binary data/unrwa.rda |binary man/refugees-package.Rd | 8 ++++---- 13 files changed, 35 insertions(+), 25 deletions(-)
Title: Characterise Tables of an OMOP Common Data Model Instance
Description: Summarises key information in data mapped to the Observational
Medical Outcomes Partnership (OMOP) common data model. Assess suitability to
perform specific epidemiological studies and explore the different domains
to obtain feasibility counts and trends.
Author: Marta Alcalde-Herraiz [aut] ,
Kim Lopez-Guell [aut] ,
Elin Rowlands [aut] ,
Cecilia Campanile [aut, cre] ,
Edward Burn [aut] ,
Marti Catala [aut]
Maintainer: Cecilia Campanile <cecilia.campanile@ndorms.ox.ac.uk>
Diff between OmopSketch versions 0.5.1 dated 2025-06-19 and 1.0.0 dated 2025-11-19
OmopSketch-0.5.1/OmopSketch/R/summariseTableQuality.R |only OmopSketch-0.5.1/OmopSketch/R/tableQuality.R |only OmopSketch-0.5.1/OmopSketch/man/interval.Rd |only OmopSketch-0.5.1/OmopSketch/tests/testthat/test-plotInObservation.R |only OmopSketch-0.5.1/OmopSketch/tests/testthat/test-summariseInObservation.R |only OmopSketch-0.5.1/OmopSketch/tests/testthat/test-summariseRecordCount.R |only OmopSketch-0.5.1/OmopSketch/tests/testthat/test-summariseTableQuality.R |only OmopSketch-1.0.0/OmopSketch/DESCRIPTION | 26 OmopSketch-1.0.0/OmopSketch/MD5 | 231 OmopSketch-1.0.0/OmopSketch/NAMESPACE | 8 OmopSketch-1.0.0/OmopSketch/NEWS.md | 37 OmopSketch-1.0.0/OmopSketch/R/OmopSketch-package.R | 1 OmopSketch-1.0.0/OmopSketch/R/checks.R | 32 OmopSketch-1.0.0/OmopSketch/R/databaseCharacteristics.R | 162 OmopSketch-1.0.0/OmopSketch/R/documentationHelper.R | 74 OmopSketch-1.0.0/OmopSketch/R/mockOmopSketch.R | 107 OmopSketch-1.0.0/OmopSketch/R/plotConceptSetCounts.R | 32 OmopSketch-1.0.0/OmopSketch/R/plotInObservation.R | 108 OmopSketch-1.0.0/OmopSketch/R/plotObservationPeriod.R | 69 OmopSketch-1.0.0/OmopSketch/R/plotPerson.R |only OmopSketch-1.0.0/OmopSketch/R/plotRecordCount.R | 109 OmopSketch-1.0.0/OmopSketch/R/plotTrend.R |only OmopSketch-1.0.0/OmopSketch/R/shinyCharacteristics.R | 290 OmopSketch-1.0.0/OmopSketch/R/sqlTranslations.R |only OmopSketch-1.0.0/OmopSketch/R/summariseClinicalRecords.R | 617 OmopSketch-1.0.0/OmopSketch/R/summariseConceptCounts.R | 15 OmopSketch-1.0.0/OmopSketch/R/summariseConceptIdCounts.R | 107 OmopSketch-1.0.0/OmopSketch/R/summariseConceptSetCounts.R | 31 OmopSketch-1.0.0/OmopSketch/R/summariseInObservation.R | 388 OmopSketch-1.0.0/OmopSketch/R/summariseInternal.R | 96 OmopSketch-1.0.0/OmopSketch/R/summariseMissingData.R | 77 OmopSketch-1.0.0/OmopSketch/R/summariseObservationPeriod.R | 220 OmopSketch-1.0.0/OmopSketch/R/summariseOmopSnapshot.R | 206 OmopSketch-1.0.0/OmopSketch/R/summarisePerson.R |only OmopSketch-1.0.0/OmopSketch/R/summariseRecordCount.R | 173 OmopSketch-1.0.0/OmopSketch/R/summariseTrend.R |only OmopSketch-1.0.0/OmopSketch/R/tableClinicalRecords.R | 48 OmopSketch-1.0.0/OmopSketch/R/tableConceptIdCounts.R | 178 OmopSketch-1.0.0/OmopSketch/R/tableInObservation.R | 144 OmopSketch-1.0.0/OmopSketch/R/tableMissingData.R | 71 OmopSketch-1.0.0/OmopSketch/R/tableObservationPeriod.R | 68 OmopSketch-1.0.0/OmopSketch/R/tableOmopSnapshot.R | 49 OmopSketch-1.0.0/OmopSketch/R/tablePerson.R |only OmopSketch-1.0.0/OmopSketch/R/tableRecordCount.R | 118 OmopSketch-1.0.0/OmopSketch/R/tableTopConceptCounts.R | 58 OmopSketch-1.0.0/OmopSketch/R/tableTrend.R |only OmopSketch-1.0.0/OmopSketch/R/utilities.R | 139 OmopSketch-1.0.0/OmopSketch/README.md | 240 OmopSketch-1.0.0/OmopSketch/build/vignette.rds |binary OmopSketch-1.0.0/OmopSketch/inst/brand |only OmopSketch-1.0.0/OmopSketch/inst/doc/database_characteristics.R | 72 OmopSketch-1.0.0/OmopSketch/inst/doc/database_characteristics.Rmd | 138 OmopSketch-1.0.0/OmopSketch/inst/doc/database_characteristics.html | 220 OmopSketch-1.0.0/OmopSketch/inst/doc/missing_data.R | 133 OmopSketch-1.0.0/OmopSketch/inst/doc/missing_data.Rmd | 123 OmopSketch-1.0.0/OmopSketch/inst/doc/missing_data.html |90483 ++++++---- OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_clinical_tables_records.R | 167 OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_clinical_tables_records.Rmd | 233 OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_clinical_tables_records.html | 2701 OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_concept_id_counts.R | 78 OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_concept_id_counts.Rmd | 89 OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_concept_id_counts.html | 700 OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_observation_period.R | 172 OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_observation_period.Rmd | 257 OmopSketch-1.0.0/OmopSketch/inst/doc/summarise_observation_period.html | 1523 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OmopSketch-1.0.0/OmopSketch/man/shinyCharacteristics.Rd | 52 OmopSketch-1.0.0/OmopSketch/man/style-table.Rd |only OmopSketch-1.0.0/OmopSketch/man/summariseClinicalRecords.Rd | 107 OmopSketch-1.0.0/OmopSketch/man/summariseConceptCounts.Rd | 22 OmopSketch-1.0.0/OmopSketch/man/summariseConceptIdCounts.Rd | 71 OmopSketch-1.0.0/OmopSketch/man/summariseConceptSetCounts.Rd | 37 OmopSketch-1.0.0/OmopSketch/man/summariseInObservation.Rd | 41 OmopSketch-1.0.0/OmopSketch/man/summariseMissingData.Rd | 65 OmopSketch-1.0.0/OmopSketch/man/summariseObservationPeriod.Rd | 63 OmopSketch-1.0.0/OmopSketch/man/summariseOmopSnapshot.Rd | 21 OmopSketch-1.0.0/OmopSketch/man/summarisePerson.Rd |only OmopSketch-1.0.0/OmopSketch/man/summariseRecordCount.Rd | 60 OmopSketch-1.0.0/OmopSketch/man/summariseTrend.Rd |only OmopSketch-1.0.0/OmopSketch/man/tableClinicalRecords.Rd | 40 OmopSketch-1.0.0/OmopSketch/man/tableConceptIdCounts.Rd | 28 OmopSketch-1.0.0/OmopSketch/man/tableInObservation.Rd | 21 OmopSketch-1.0.0/OmopSketch/man/tableMissingData.Rd | 46 OmopSketch-1.0.0/OmopSketch/man/tableObservationPeriod.Rd | 49 OmopSketch-1.0.0/OmopSketch/man/tableOmopSnapshot.Rd | 40 OmopSketch-1.0.0/OmopSketch/man/tablePerson.Rd |only OmopSketch-1.0.0/OmopSketch/man/tableRecordCount.Rd | 20 OmopSketch-1.0.0/OmopSketch/man/tableTopConceptCounts.Rd | 52 OmopSketch-1.0.0/OmopSketch/man/tableTrend.Rd |only OmopSketch-1.0.0/OmopSketch/tests/testthat/setup.R | 239 OmopSketch-1.0.0/OmopSketch/tests/testthat/test-databaseCharacteristics.R | 76 OmopSketch-1.0.0/OmopSketch/tests/testthat/test-mockOmopSketch.R | 15 OmopSketch-1.0.0/OmopSketch/tests/testthat/test-restrictStudyPeriod.R | 19 OmopSketch-1.0.0/OmopSketch/tests/testthat/test-sqlTranslations.R |only OmopSketch-1.0.0/OmopSketch/tests/testthat/test-summariseClinicalRecords.R | 356 OmopSketch-1.0.0/OmopSketch/tests/testthat/test-summariseConceptIdCounts.R | 92 OmopSketch-1.0.0/OmopSketch/tests/testthat/test-summariseMissingData.R | 243 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Title: Inferential Methods for Multimodal and Other Networks
Description: A set of tools for testing networks.
It includes functions for univariate and multivariate
conditional uniform graph and quadratic assignment procedure testing,
and network regression.
The package is a complement to
'Multimodal Political Networks' (2021, ISBN:9781108985000),
and includes various datasets used in the book.
Built on the 'manynet' package, all functions operate with matrices,
edge lists, and 'igraph', 'network', and 'tidygraph' objects,
and on one-mode and two-mode (bipartite) networks.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb] ,
Jael Tan [ctb] ,
Bernhard Bieri [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between migraph versions 1.5.3 dated 2025-10-27 and 1.5.6 dated 2025-11-19
DESCRIPTION | 10 MD5 | 35 - NAMESPACE | 7 NEWS.md | 30 + R/class_makes.R | 14 R/class_models.R | 134 ++++ R/measure_over.R | 7 R/migraph-package.R | 2 R/model_predict.R |only inst/tutorials/tutorial7/diffusion.Rmd | 146 ++--- inst/tutorials/tutorial7/diffusion.html | 856 ++++++++++++++---------------- inst/tutorials/tutorial8/diversity.Rmd | 107 ++- inst/tutorials/tutorial8/diversity.html | 893 +++++++++++++++++++++++--------- inst/tutorials/tutorial9 |only man/predict.Rd |only tests/testthat/test-measure_over.R | 2 tests/testthat/test-model_regression.R | 2 tests/testthat/test-model_tests.R | 9 18 files changed, 1428 insertions(+), 826 deletions(-)
Title: Summarise Patient-Level Drug Utilisation in Data Mapped to the
OMOP Common Data Model
Description: Summarise patient-level drug utilisation cohorts using data mapped
to the Observational Medical Outcomes Partnership (OMOP) common data model.
New users and prevalent users cohorts can be generated and their
characteristics, indication and drug use summarised.
Author: Marti Catala [aut, cre] ,
Mike Du [ctb] ,
Yuchen Guo [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Xintong Li [ctb] ,
Marta Alcalde-Herraiz [ctb] ,
Nuria Mercade-Besora [aut] ,
Xihang Chen [aut]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between DrugUtilisation versions 1.0.4 dated 2025-07-02 and 1.0.5 dated 2025-11-19
DESCRIPTION | 21 MD5 | 138 NAMESPACE | 2 NEWS.md | 13 R/addDrugUtilisation.R | 24 R/addIntersect.R | 4 R/benchmarkDrugUtilisation.R | 29 R/cohortUtilities.R | 18 R/dailyDose.R | 35 R/documentationHelpers.R | 30 R/erafyCohort.R | 1 R/mockDrugUtilisation.R | 76 R/pattern.R | 18 R/plots.R | 113 R/reexports.R | 4 R/require.R | 6 R/summariseDrugRestart.R | 18 R/summariseIntersect.R | 4 R/summariseProportionOfPatientsCovered.R | 12 R/tables.R | 37 README.md | 36 inst/doc/create_cohorts.R | 174 inst/doc/create_cohorts.Rmd | 242 inst/doc/create_cohorts.html | 813 inst/doc/drug_utilisation.R | 66 inst/doc/drug_utilisation.Rmd | 24 inst/doc/drug_utilisation.html |13570 ++++++------- man/addIndication.Rd | 4 man/benchmarkDrugUtilisation.Rd | 7 man/erafyCohort.Rd | 1 man/mockDrugUtilisation.Rd | 25 man/plotDoc.Rd | 12 man/plotDrugRestart.Rd | 19 man/plotDrugUtilisation.Rd | 12 man/plotIndication.Rd | 21 man/plotProportionOfPatientsCovered.Rd | 11 man/plotTreatment.Rd | 19 man/reexports.Rd | 3 man/summariseIndication.Rd | 4 man/tableDoc.Rd | 23 man/tableDoseCoverage.Rd | 26 man/tableDrugRestart.Rd | 26 man/tableDrugUtilisation.Rd | 26 man/tableIndication.Rd | 26 man/tableProportionOfPatientsCovered.Rd | 26 man/tableTreatment.Rd | 26 tests/testthat/setup.R | 82 tests/testthat/test-addDrugUtilisation.R | 33 tests/testthat/test-benchmarkDrugUtilisation.R | 8 tests/testthat/test-dailyDose.R | 27 tests/testthat/test-erafyCohort.R | 9 tests/testthat/test-generateDrugUtilisationCohortSet.R | 34 tests/testthat/test-generatedAtcCohortSet.R | 5 tests/testthat/test-generatedIngredientCohortSet.R | 28 tests/testthat/test-indication.R | 71 tests/testthat/test-patterns.R | 11 tests/testthat/test-plotProportionOfPatientsCovered.R | 20 tests/testthat/test-plotTreatment.R | 16 tests/testthat/test-plots.R | 25 tests/testthat/test-require.R | 69 tests/testthat/test-summariseDrugRestart.R | 14 tests/testthat/test-summariseDrugUtilisation.R | 7 tests/testthat/test-summariseProportionOfPatientsCovered.R | 40 tests/testthat/test-summariseTreatment.R | 13 tests/testthat/test-tables.R | 54 vignettes/create_cohorts.Rmd | 242 vignettes/daily_dose_calculation.html |only vignettes/drug_restart.html |only vignettes/drug_utilisation.Rmd | 24 vignettes/indication.html |only vignettes/mock_data.html |only vignettes/summarise_treatments.html |only vignettes/treatment_discontinuation.html |only 73 files changed, 8947 insertions(+), 7730 deletions(-)
More information about DrugUtilisation at CRAN
Permanent link
Title: Automatic Plotting of Many Graphs
Description: Visual exploration and presentation of networks should not be difficult.
This package includes functions for plotting networks and network-related metrics with sensible and pretty defaults.
It includes 'ggplot2'-based plot methods for many popular network package classes.
It also includes some novel layout algorithms, and options for straightforward, consistent themes.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between autograph versions 0.4.1 dated 2025-09-11 and 0.5.0 dated 2025-11-19
autograph-0.4.1/autograph/R/plot_graphr.R |only autograph-0.4.1/autograph/R/plot_graphs.R |only autograph-0.4.1/autograph/R/plot_grapht.R |only autograph-0.4.1/autograph/tests/testthat/test-plot_graphr.R |only autograph-0.5.0/autograph/DESCRIPTION | 14 - autograph-0.5.0/autograph/MD5 | 60 +++--- autograph-0.5.0/autograph/NAMESPACE | 5 autograph-0.5.0/autograph/NEWS.md | 38 +++ autograph-0.5.0/autograph/R/autograph-package.R | 5 autograph-0.5.0/autograph/R/autograph_utilities.R | 25 -- autograph-0.5.0/autograph/R/data_precooked.R | 14 + autograph-0.5.0/autograph/R/graph_edges.R |only autograph-0.5.0/autograph/R/graph_labels.R |only autograph-0.5.0/autograph/R/graph_layout.R |only autograph-0.5.0/autograph/R/graph_nodes.R |only autograph-0.5.0/autograph/R/graphr.R |only autograph-0.5.0/autograph/R/graphs.R |only autograph-0.5.0/autograph/R/grapht.R |only autograph-0.5.0/autograph/R/plot_convergence.R | 15 - autograph-0.5.0/autograph/R/plot_diagnostics.R |only autograph-0.5.0/autograph/R/plot_manynet.R | 16 + autograph-0.5.0/autograph/R/plot_migraph.R | 8 autograph-0.5.0/autograph/R/theme_palettes.R | 54 +++++ autograph-0.5.0/autograph/R/theme_set.R | 97 ++++------ autograph-0.5.0/autograph/R/zzz.R | 12 - autograph-0.5.0/autograph/README.md | 13 - autograph-0.5.0/autograph/data/goldfish_changepoints.rda |only autograph-0.5.0/autograph/data/goldfish_outliers.rda |only autograph-0.5.0/autograph/inst/tutorials/tutorial2/visualisation.Rmd | 13 + autograph-0.5.0/autograph/inst/tutorials/tutorial2/visualisation.html | 75 +++++-- autograph-0.5.0/autograph/man/ag_call.Rd | 21 ++ autograph-0.5.0/autograph/man/figures/README-theme-opts-1.png |only autograph-0.5.0/autograph/man/figures/README-theme-opts-2.png |only autograph-0.5.0/autograph/man/made_earlier.Rd | 10 + autograph-0.5.0/autograph/man/plot_adequacy.Rd |only autograph-0.5.0/autograph/man/plot_graphr.Rd | 4 autograph-0.5.0/autograph/man/plot_graphs.Rd | 2 autograph-0.5.0/autograph/man/plot_grapht.Rd | 4 autograph-0.5.0/autograph/man/theme_set.Rd | 13 + autograph-0.5.0/autograph/tests/testthat/test-graphr.R |only 40 files changed, 360 insertions(+), 158 deletions(-)
Title: OLS, Moderated, Logistic, and Count Regressions Made Simple
Description: Provides SPSS- and SAS-like output for least squares multiple regression,
logistic regression, and count variable regressions. Detailed output is also provided for
OLS moderated regression, interaction plots, and Johnson-Neyman
regions of significance. The output includes standardized
coefficients, partial and semi-partial correlations, collinearity diagnostics,
plots of residuals, and detailed information about simple slopes for interactions.
The output for some functions includes Bayes Factors and, if requested,
regression coefficients from Bayesian Markov Chain Monte Carlo analyses.
There are numerous options for model plots.
The REGIONS_OF_SIGNIFICANCE function also provides
Johnson-Neyman regions of significance and plots of interactions for both lm
and lme models. There is also a function for partial and semipartial
correlations and a function for conducting Cohen's
set correlation analyses.
Author: Brian P. O'Connor [aut, cre]
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between SIMPLE.REGRESSION versions 0.2.7 dated 2025-09-26 and 0.2.8 dated 2025-11-19
DESCRIPTION | 11 +- MD5 | 24 ++-- NAMESPACE | 7 - R/COUNT_REGRESSION.R | 202 +++++++++++++++++++++++++------------ R/LOGISTIC_REGRESSION.R | 242 ++++++++++++++++++++++++++++----------------- R/OLS_REGRESSION.R | 124 +++++++++++++++++------ R/PARTIAL_COR.R | 12 +- R/SET_CORRELATION.R | 86 +++++++-------- R/utilities_boc.R | 34 ++++++ man/COUNT_REGRESSION.Rd | 34 +++++- man/LOGISTIC_REGRESSION.Rd | 27 +++++ man/OLS_REGRESSION.Rd | 12 +- man/PARTIAL_COR.Rd | 52 +++++++++ 13 files changed, 600 insertions(+), 267 deletions(-)
More information about SIMPLE.REGRESSION at CRAN
Permanent link
Title: Modeling Over Dispersed Binomial Outcome Data Using BMD and ABD
Description: Contains Probability Mass Functions, Cumulative Mass
Functions, Negative Log Likelihood value, parameter estimation and
modeling data using Binomial Mixture Distributions (BMD) (Manoj et al
(2013) <doi:10.5539/ijsp.v2n2p24>) and Alternate Binomial
Distributions (ABD) (Paul (1985) <doi:10.1080/03610928508828990>),
also Journal article to use the package(<doi:10.21105/joss.01505>).
Author: Amalan Mahendran [aut, cre] ,
Pushpakanthie Wijekoon [aut, ctb]
Maintainer: Amalan Mahendran <amalan0595@gmail.com>
Diff between fitODBOD versions 1.5.4 dated 2024-11-20 and 1.5.5 dated 2025-11-19
DESCRIPTION | 13 +++++++------ MD5 | 10 +++++----- R/BetaCorrBin.R | 8 ++++---- build/partial.rdb |binary man/dBetaCorrBin.Rd | 4 ++-- man/pBetaCorrBin.Rd | 4 ++-- 6 files changed, 20 insertions(+), 19 deletions(-)
Title: Simple Presentation of Estimated Exponential Semi-Variograms
Description: User friendly interface based on the R package 'gstat' to fit
exponential parametric models to empirical semi-variograms in order to
model the spatial correlation structure of health data. Geo-located
health outcomes of survey participants may be used to model spatial
effects on health in an ego-centred approach. The package contains a
range of functions to help explore the spatial structure of the data
as well as visualize the fit of exponential models for various
metaparameter combinations with respect to the number of lag intervals
and maximal distance. Furthermore, the outcome of interest can be
adjusted for covariates by fitting a linear regression in a
preliminary step before the semi-variogram fitting process.
Author: Julia Dyck [aut, cre],
Odile Sauzet [aut],
Jan-Ole Koslik [aut]
Maintainer: Julia Dyck <j.dyck@uni-bielefeld.de>
Diff between EgoCor versions 1.3.3 dated 2025-05-19 and 1.3.4 dated 2025-11-19
DESCRIPTION | 6 ++--- MD5 | 8 +++---- build/partial.rdb |binary inst/REFERENCES.bib | 4 +-- inst/doc/Intro_to_EgoCor.html | 47 +++++++++++++++++++++--------------------- 5 files changed, 33 insertions(+), 32 deletions(-)
Title: Causal Analysis of Observational Time-to-Event Data
Description: Implements target trial emulation methods to apply randomized
clinical trial design and analysis in an observational setting. Using
marginal structural models, it can estimate intention-to-treat and
per-protocol effects in emulated trials using electronic health
records. A description and application of the method can be found in
Danaei et al (2013) <doi:10.1177/0962280211403603>.
Author: Isaac Gravestock [aut, cre] ,
Li Su [aut],
Roonak Rezvani [aut] ,
Julia Moesch [aut],
Medical Research Council [fnd],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Isaac Gravestock <isaac.gravestock@roche.com>
Diff between TrialEmulation versions 0.0.4.5 dated 2025-06-13 and 0.0.4.8 dated 2025-11-19
DESCRIPTION | 8 - MD5 | 14 +- NEWS.md | 10 + inst/doc/Getting-Started.Rmd | 2 inst/doc/Getting-Started.html | 193 ++++++++++++++++----------------- inst/doc/new-interface.html | 8 - tests/testthat/test-data_preparation.R | 8 - vignettes/Getting-Started.Rmd | 2 8 files changed, 124 insertions(+), 121 deletions(-)
More information about TrialEmulation at CRAN
Permanent link
Title: Visualization of Spline Effects in GAM and GLM Models
Description: Creates 'ggplot2'-based visualizations of smooth effects from GAM (Generalized Additive Models)
fitted with 'mgcv' and spline effects from GLM (Generalized Linear Models). Supports interaction terms
and provides hazard ratio plots with histograms for survival analysis.
Wood (2017, ISBN:9781498728331) provides comprehensive methodology for generalized additive models.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between splineplot versions 0.2.0 dated 2025-10-24 and 0.2.1 dated 2025-11-19
DESCRIPTION | 7 +++-- MD5 | 10 +++---- NEWS.md | 9 ++++++ R/splineplot.R | 14 +++++++++- README.md | 10 +++---- inst/doc/getting-started.html | 56 +++++++++++++++++++++--------------------- 6 files changed, 63 insertions(+), 43 deletions(-)
Title: Headers and Static Libraries for 'HDF5'
Description: 'HDF5' (Hierarchical Data Format 5) is a high-performance
library and file format for storing and managing large, complex
data. This package provides the static libraries and headers for
the 'HDF5' 'C' library (release 1.14.6). It is intended for R
package developers to use in the 'LinkingTo' field, which
eliminates the need for users to install system-level 'HDF5'
dependencies. This build is compiled with thread-safety enabled
and supports dynamic loading of external compression filters.
'HDF5' is developed by 'The HDF Group' <https://www.hdfgroup.org/>.
Author: Daniel P. Smith [aut, cre] ,
The HDF Group [cph] ,
Jean-loup Mark [cph] ,
Gailly Adler [cph]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
This is a re-admission after prior archival of version 1.14.6.7 dated 2025-11-17
Diff between hdf5lib versions 1.14.6.7 dated 2025-11-17 and 1.14.6.8 dated 2025-11-19
DESCRIPTION | 7 ++++--- MD5 | 15 ++++++++------- NEWS.md | 8 ++++++++ R/flags.r | 35 ++++++++++++++++++++++++++--------- README.md | 27 +++++++++++++-------------- configure | 25 ++++++++++++++++++------- configure.win | 10 +++++----- man/figures |only man/ld_flags.Rd | 2 +- 9 files changed, 83 insertions(+), 46 deletions(-)
Title: Bindings to 'GDAL'
Description: API bindings to the Geospatial Data Abstraction Library ('GDAL',
<https://gdal.org>). Implements the 'GDAL' Raster and Vector Data Models.
Bindings are implemented with 'Rcpp' modules. Exposed C++ classes and
stand-alone functions wrap much of the 'GDAL' API and provide additional
functionality. Calling signatures resemble the native C, C++ and Python APIs
provided by the 'GDAL' project. Class 'GDALRaster' encapsulates a
'GDALDataset' and its raster band objects. Class 'GDALVector' encapsulates
an 'OGRLayer' and the 'GDALDataset' that contains it. Initial bindings are
provided to the unified 'gdal' command line interface added in 'GDAL' 3.11.
C++ stand-alone functions provide bindings to most 'GDAL' "traditional"
raster and vector utilities, including 'OGR' facilities for vector
geoprocessing, several algorithms, as well as the Geometry API ('GEOS' via
'GDAL' headers), the Spatial Reference Systems API, and methods for
coordinate transformation. Bindings to the Virtual Systems In [...truncated...]
Author: Chris Toney [aut, cre] ,
Michael D. Sumner [ctb],
Frank Warmerdam [ctb, cph] ,
Even Rouault [ctb, cph] ,
Marius Appel [ctb, cph] ,
Daniel James [ctb, cph] ,
Peter Dimov [ctb, cph]
Maintainer: Chris Toney <jctoney@gmail.com>
Diff between gdalraster versions 2.2.1 dated 2025-08-29 and 2.3.0 dated 2025-11-19
DESCRIPTION | 10 MD5 | 174 ++--- NAMESPACE | 1 NEWS.md | 53 + R/RcppExports.R | 395 ++++++++++- R/cmb_table.R | 9 R/display.R | 52 + R/gdal_cli.R | 203 +++-- R/gdal_helpers.R | 84 ++ R/gdal_mdim.R |only R/gdalalg.R | 43 + R/gdalraster.R | 142 +++- R/gdalraster_proc.R | 99 ++ R/geom.R | 465 +++++++++++-- R/ogr_manage.R | 2 README.md | 32 build/vignette.rds |binary configure | 248 +++++++ configure.ac | 35 - inst/COPYRIGHTS | 3 inst/doc/gdal-config-quick-ref.Rmd | 2 inst/doc/gdal-config-quick-ref.html | 5 inst/doc/raster-api-tutorial.html | 23 inst/doc/raster-attribute-tables.html | 111 +-- inst/extdata/byte.nc |only man/CmbTable-class.Rd | 9 man/GDALAlg-class.Rd | 45 + man/GDALRaster-class.Rd | 143 +++- man/bbox_to_wkt.Rd | 1 man/combine.Rd | 4 man/g_factory.Rd | 63 + man/g_query.Rd | 11 man/g_unary_op.Rd | 121 ++- man/g_util.Rd | 31 man/g_wk2wk.Rd | 6 man/gdal_cli.Rd | 45 + man/gdal_get_driver_md.Rd |only man/gdalraster-package.Rd | 15 man/make_chunk_index.Rd |only man/mdim_as_classic.Rd |only man/mdim_info.Rd |only man/mdim_translate.Rd |only man/ogr2ogr.Rd | 3 man/ogrinfo.Rd | 2 man/pixel_extract.Rd | 2 man/plot_geom.Rd |only man/polygonize.Rd | 7 man/rasterToVRT.Rd | 22 man/vsi_get_file_metadata.Rd | 2 man/vsi_stat.Rd | 48 + src/RcppExports.cpp | 222 ++++++ src/cmb_table.cpp | 97 +- src/cmb_table.h | 26 src/gdal_dt.cpp | 6 src/gdal_dt.h | 9 src/gdal_exp.cpp | 682 +++++++++++++------- src/gdal_mdim.cpp |only src/gdal_vsi.cpp | 229 ++++-- src/gdal_vsi.h | 12 src/gdalalg.cpp | 984 +++++++++++++++++++++------- src/gdalalg.h | 35 - src/gdalraster.cpp | 1120 +++++++++++++++++++++------------ src/gdalraster.h | 154 ++-- src/gdalraster_types.h | 6 src/gdalvector.cpp | 494 +++++++------- src/gdalvector.h | 106 +-- src/geom_api.cpp | 618 ++++++++++++++---- src/geom_api.h | 30 src/ogr_util.cpp | 965 +++++++++++++++------------- src/ogr_util.h | 151 ---- src/progress_r.cpp | 1 src/rcpp_util.cpp | 31 src/rcpp_util.h | 30 src/running_stats.cpp | 37 - src/running_stats.h | 9 src/srs_api.cpp | 51 - src/srs_api.h | 6 src/transform.cpp | 105 +-- src/transform.h | 8 src/vsifile.cpp | 55 - src/vsifile.h | 14 tests/testthat/test-GDALAlg-class.R | 286 ++++++++ tests/testthat/test-GDALRaster-class.R | 288 ++++++++ tests/testthat/test-GDALVector-class.R | 12 tests/testthat/test-display.R | 8 tests/testthat/test-gdal_cli.R | 8 tests/testthat/test-gdal_exp.R | 11 tests/testthat/test-gdal_helpers.R | 12 tests/testthat/test-gdal_mdim.R |only tests/testthat/test-gdal_vsi.R | 10 tests/testthat/test-gdalraster_proc.R | 92 ++ tests/testthat/test-geom.R | 137 ++++ vignettes/gdal-config-quick-ref.Rmd | 2 93 files changed, 7057 insertions(+), 2873 deletions(-)
Title: Cox Regression (Proportional Hazards Model) with Multiple Causes
and Mixed Effects
Description: Extends the Cox model to events with more than one causes. Also supports random and fixed effects, tied events, and time-varying variables. Model details are provided in Peng et al. (2018) <doi:10.1509/jmr.14.0643>.
Author: Jing Peng [aut, cre]
Maintainer: Jing Peng <pengjing@live.com>
Diff between CoxPlus versions 1.1.1 dated 2015-10-24 and 1.5.6 dated 2025-11-19
DESCRIPTION | 21 +- MD5 | 20 +- NAMESPACE | 4 R/CoxPlus.R |only R/cumHazard.R | 37 ++--- R/fastCox.R | 68 ++++++--- inst |only man/CoxPlus.Rd | 48 ------ man/fastCox.Rd |only src/Makevars | 9 - src/Makevars.win | 1 src/RcppExports.cpp |only src/coxReg.cpp | 375 ++++++++++++++++++++++++++++++---------------------- 13 files changed, 327 insertions(+), 256 deletions(-)
Title: Bayesian Estimation and Forecasting of Age-Specific Rates
Description: Fast Bayesian estimation and forecasting of age-specific
rates, probabilities, and means, based on 'Template Model Builder'.
Author: John Bryant [aut, cre],
Junni Zhang [aut],
Bayesian Demography Limited [cph]
Maintainer: John Bryant <john@bayesiandemography.com>
Diff between bage versions 0.10.1 dated 2025-11-17 and 0.10.2 dated 2025-11-19
DESCRIPTION | 6 +-- MD5 | 34 +++++++++--------- NEWS.md | 14 +++++++ R/util.R | 58 ++++++++++++++++---------------- build/vignette.rds |binary inst/doc/vig01_intro.Rmd | 52 ++++++++++++++-------------- inst/doc/vig01_intro.html | 55 +++++++++++++++--------------- tests/testthat/test-util.R | 11 ++---- vignettes/articles/vig02_math.Rmd | 4 +- vignettes/articles/vig03_priors.Rmd | 4 +- vignettes/articles/vig04_svd.Rmd | 4 +- vignettes/articles/vig05_bdef.Rmd | 4 +- vignettes/articles/vig06_mortality.Rmd | 4 +- vignettes/articles/vig07_simulation.Rmd | 4 +- vignettes/articles/vig08_workflow.Rmd | 4 +- vignettes/articles/vig09_covariates.Rmd | 4 +- vignettes/articles/vig10_datamod.Rmd | 4 +- vignettes/vig01_intro.Rmd | 52 ++++++++++++++-------------- 18 files changed, 168 insertions(+), 150 deletions(-)
Title: Computes Adaptable Radial Axes Mappings
Description: Computes low-dimensional point representations of high-dimensional numerical data according to the data visualization method Adaptable Radial Axes described in: Manuel Rubio-Sánchez, Alberto Sanchez, and Dirk J. Lehmann (2017) "Adaptable radial axes plots for improved multivariate data visualization" <doi:10.1111/cgf.13196>.
Author: Manuel Rubio-Sanchez [aut, cre, cph] ,
Dirk J. Lehmann [ctb] ,
Miguel Angel Munoz Mohedano [ctb] ,
Alberto Sanchez Campos [ctb] ,
Cristina Soguero-Ruiz [ctb]
Maintainer: Manuel Rubio-Sanchez <manuel.rubio@urjc.es>
Diff between aramappings versions 0.1.0 dated 2025-11-18 and 0.1.1 dated 2025-11-19
aramappings-0.1.0/aramappings/man/figures/readme_autompg_unconstrained_l2.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_exact_l1_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_exact_l2_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_exact_linf_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_ordered_l1_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_ordered_l2_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_ordered_linf_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_unconstrained_l1_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_unconstrained_l2_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_unconstrained_linf_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_cereals_ara_bb.svg |only aramappings-0.1.1/aramappings/DESCRIPTION | 6 - aramappings-0.1.1/aramappings/MD5 | 34 ++++------ aramappings-0.1.1/aramappings/NEWS.md | 8 ++ aramappings-0.1.1/aramappings/README.md | 6 - aramappings-0.1.1/aramappings/inst/doc/intro_to_aramappings.R | 12 +-- aramappings-0.1.1/aramappings/inst/doc/intro_to_aramappings.Rmd | 12 +-- aramappings-0.1.1/aramappings/inst/doc/intro_to_aramappings.html | 22 +++--- aramappings-0.1.1/aramappings/man/figures/readme_autompg_unconstrained_l2.jpg |only aramappings-0.1.1/aramappings/man/figures/vignette_autompg_exact_l1_bb.jpg |only aramappings-0.1.1/aramappings/man/figures/vignette_autompg_exact_l2_bb.jpg |only aramappings-0.1.1/aramappings/man/figures/vignette_autompg_ordered_l2_bb.jpg |only aramappings-0.1.1/aramappings/man/figures/vignette_autompg_unconstrained_l1_bb.jpg |only aramappings-0.1.1/aramappings/man/figures/vignette_autompg_unconstrained_l2_bb.jpg |only aramappings-0.1.1/aramappings/man/figures/vignette_cereals_ara_bb.jpg |only aramappings-0.1.1/aramappings/tests/testthat/test-ara_unconstrained_l1.R | 2 aramappings-0.1.1/aramappings/vignettes/intro_to_aramappings.Rmd | 12 +-- 27 files changed, 59 insertions(+), 55 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-14 0.1
Title: Association Among Disease Counts and Socio-Environmental Factors
Description: Estimation of association between disease or death counts (e.g. COVID-19) and socio-environmental risk factors using a zero-inflated Bayesian spatiotemporal model. Non-spatiotemporal models and/or models without zero-inflation are also included for comparison. Functions to produce corresponding maps are also included. See Chakraborty et al. (2022) <doi:10.1007/s13253-022-00487-1> for more details on the method.
Author: Suman Majumder [cre, aut, cph],
Yoon-Bae Jun [aut, cph],
Sounak Chakraborty [ctb],
Chae-Young Lim [ctb],
Tanujit Dey [ctb]
Maintainer: Suman Majumder <smajumd2@gmail.com>
Diff between BSTZINB versions 2.0.0 dated 2025-01-30 and 2.0.1 dated 2025-11-19
DESCRIPTION | 10 MD5 | 35 +- NAMESPACE | 4 NEWS.md | 6 R/BNB.R | 1 R/BSTNB.R | 1 R/BSTZINB.R | 5 R/BZINB.R | 2 R/aux_func.R | 48 +- R/methods.R |only R/synth_dat_IA.R |only data/synth_dat_IA.rda |only inst/doc/BSTZINB_vignette.R | 21 - inst/doc/BSTZINB_vignette.Rmd | 21 - inst/doc/BSTZINB_vignette.html | 672 ++++++++++++++++++++--------------------- man/compute_NB_DIC.Rd | 8 man/compute_ZINB_DIC.Rd | 8 man/print.DCMB.Rd |only man/print.summ.DCMB.Rd |only man/summary.DCMB.Rd |only man/synth_dat_IA.Rd |only vignettes/BSTZINB_vignette.Rmd | 21 - 22 files changed, 462 insertions(+), 401 deletions(-)
Title: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] ,
Posit Software, PBC [cph, fnd],
Christophe Dervieux [ctb] ,
Devon Ryan [ctb] ,
Ethan Heinzen [ctb],
Fernando Cagua [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.57 dated 2025-04-15 and 0.58 dated 2025-11-19
DESCRIPTION | 16 +++++++++------- MD5 | 10 +++++----- R/latex.R | 6 ++++++ man/check_installed.Rd | 2 +- man/tlmgr.Rd | 2 +- tests/test-cran/test-latex.R | 1 + 6 files changed, 23 insertions(+), 14 deletions(-)
Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support Summary and Analysis of
Extension Program Evaluation in R, and An R
Companion for the Handbook of Biological Statistics.
Vignettes are available at <https://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 2.5.0 dated 2025-02-13 and 2.5.1 dated 2025-11-19
DESCRIPTION | 14 +++++++------- MD5 | 20 ++++++++++---------- NEWS.md | 12 ++++++++++++ R/correlation.r | 3 +-- R/mangiaficoD.r | 42 +++++++++++++++++++++++++++++++----------- R/multiMangiaficoD.r | 22 ++++++++++++++++++---- R/nagelkerke.r | 2 +- inst/CITATION | 4 ++-- man/correlation.Rd | 2 +- man/mangiaficoD.Rd | 24 +++++++++++++++++------- man/multiMangiaficoD.Rd | 11 ++++++++++- 11 files changed, 110 insertions(+), 46 deletions(-)
Title: General Smoothing Splines
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
Author: Chong Gu [aut, cre]
Maintainer: Chong Gu <chong@purdue.edu>
Diff between gss versions 2.2-9 dated 2025-04-13 and 2.2-10 dated 2025-11-19
ChangeLog | 8 +++++++- DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- R/family.R | 3 ++- src/dchdc0.f |only 5 files changed, 17 insertions(+), 9 deletions(-)
Title: Advanced and Fast Data Transformation
Description: A large C/C++-based package for advanced data transformation and
statistical computing in R that is extremely fast, class-agnostic, robust, and
programmer friendly. Core functionality includes a rich set of S3 generic grouped
and weighted statistical functions for vectors, matrices and data frames, which
provide efficient low-level vectorizations, OpenMP multithreading, and skip missing
values by default. These are integrated with fast grouping and ordering algorithms
(also callable from C), and efficient data manipulation functions. The package also
provides a flexible and rigorous approach to time series and panel data in R, fast
functions for data transformation and common statistical procedures, detailed
(grouped, weighted) summary statistics, powerful tools to work with nested data,
fast data object conversions, functions for memory efficient R programming, and
helpers to effectively deal with variable labels, attributes, and missing data. It
seamlessly supports base R objects/cla [...truncated...]
Author: Sebastian Krantz [aut, cre] ,
Matt Dowle [ctb],
Arun Srinivasan [ctb],
Morgan Jacob [ctb],
Dirk Eddelbuettel [ctb],
Laurent Berge [ctb],
Kevin Tappe [ctb],
Alina Cherkas [ctb],
R Core Team and contributors worldwide [ctb],
Martyn Plummer [cph],
1999- [...truncated...]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between collapse versions 2.1.4 dated 2025-10-24 and 2.1.5 dated 2025-11-19
DESCRIPTION | 8 +++---- MD5 | 30 ++++++++++++++-------------- NEWS.md | 4 +++ R/collap.R | 31 +++++++++++++++-------------- inst/doc/collapse_and_sf.html | 5 ++-- inst/doc/collapse_documentation.html | 4 +-- inst/doc/collapse_for_tidyverse_users.html | 9 ++++---- inst/doc/collapse_object_handling.html | 9 ++++---- inst/doc/developing_with_collapse.html | 5 ++-- man/pivot.Rd | 2 - src/ffirst.c | 3 -- src/flast.c | 3 -- src/fmean.c | 2 - src/fmode.c | 4 +-- src/fndistinct.c | 2 - src/fsum.c | 2 - 16 files changed, 66 insertions(+), 57 deletions(-)
Title: Summarise and Visualise Characteristics of Patients in the OMOP
CDM
Description: Summarise and visualise the characteristics of patients in data
mapped to the Observational Medical Outcomes Partnership (OMOP) common data
model (CDM).
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Mike Du [ctb] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Marta Alcalde [aut]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between CohortCharacteristics versions 1.0.2 dated 2025-10-23 and 1.1.0 dated 2025-11-19
DESCRIPTION | 12 MD5 | 90 NEWS.md | 16 R/documentationHelpers.R | 10 R/plot.R | 15 R/plotCharacteristics.R | 7 R/plotCohortAttrition.R | 4 R/plotCohortCount.R | 6 R/plotCohortOverlap.R | 5 R/plotCohortTiming.R | 6 R/plotComparedLargeScaleCharacteristics.R | 6 R/plotLargeScaleCharacteristics.R | 6 R/summariseCharacteristics.R | 96 R/summariseLargeScaleCharacteristics.R | 72 R/table.R | 8 R/tableCharacteristics.R | 5 R/tableCohortAttrition.R | 2 R/tableCohortCount.R | 2 R/tableCohortOverlap.R | 2 R/tableCohortTiming.R | 2 R/tableLargeScaleCharacteristics.R | 7 inst/doc/summarise_characteristics.Rmd | 3 inst/doc/summarise_characteristics.html | 3325 ++++++++------- inst/doc/summarise_cohort_overlap.html | 582 +- inst/doc/summarise_cohort_timing.html | 674 +-- inst/doc/summarise_large_scale_characteristics.html | 543 +- man/plotCharacteristics.Rd | 7 man/plotCohortCount.Rd | 14 man/plotCohortOverlap.Rd | 7 man/plotCohortTiming.Rd | 9 man/plotComparedLargeScaleCharacteristics.Rd | 9 man/plotDoc.Rd | 6 man/plotLargeScaleCharacteristics.Rd | 9 man/summariseCharacteristics.Rd | 10 man/tableCharacteristics.Rd | 7 man/tableCohortAttrition.Rd | 7 man/tableCohortCount.Rd | 7 man/tableCohortOverlap.Rd | 7 man/tableCohortTiming.Rd | 7 man/tableDoc.Rd | 6 man/tableTopLargeScaleCharacteristics.Rd | 13 tests/testthat/test-plotCharacteristics.R | 24 tests/testthat/test-summariseCharacteristics.R | 37 tests/testthat/test-summariseCohortCodelist.R | 3 tests/testthat/test-summariseLargeScaleCharacteristics.R | 23 vignettes/summarise_characteristics.Rmd | 3 46 files changed, 3212 insertions(+), 2509 deletions(-)
More information about CohortCharacteristics at CRAN
Permanent link
Title: Bridge Sampling for Marginal Likelihoods and Bayes Factors
Description: Provides functions for estimating marginal likelihoods, Bayes
factors, posterior model probabilities, and normalizing constants in general,
via different versions of bridge sampling (Meng & Wong, 1996,
<https://www3.stat.sinica.edu.tw/statistica/j6n4/j6n43/j6n43.htm>).
Gronau, Singmann, & Wagenmakers (2020) <doi:10.18637/jss.v092.i10>.
Author: Quentin F. Gronau [aut, cre] ,
Henrik Singmann [aut] ,
Jonathan J. Forster [ctb],
Eric-Jan Wagenmakers [ths],
The JASP Team [ctb],
Jiqiang Guo [ctb],
Jonah Gabry [ctb],
Ben Goodrich [ctb],
Kees Mulder [ctb],
Perry de Valpine [ctb],
Aki Vehtari [ctb], [...truncated...]
Maintainer: Quentin F. Gronau <Quentin.F.Gronau@gmail.com>
Diff between bridgesampling versions 1.1-2 dated 2021-04-16 and 1.2-1 dated 2025-11-19
bridgesampling-1.1-2/bridgesampling/NEWS |only bridgesampling-1.2-1/bridgesampling/DESCRIPTION | 27 bridgesampling-1.2-1/bridgesampling/MD5 | 143 bridgesampling-1.2-1/bridgesampling/NAMESPACE | 101 bridgesampling-1.2-1/bridgesampling/NEWS.md |only bridgesampling-1.2-1/bridgesampling/R/bf.R | 406 +- bridgesampling-1.2-1/bridgesampling/R/bridge_methods.R | 332 +- bridgesampling-1.2-1/bridgesampling/R/bridge_sampler.R | 1629 +++++----- bridgesampling-1.2-1/bridgesampling/R/bridge_sampler_internals.R | 661 ++-- bridgesampling-1.2-1/bridgesampling/R/bridge_sampler_normal.R | 482 +- bridgesampling-1.2-1/bridgesampling/R/bridge_sampler_tools.R | 95 bridgesampling-1.2-1/bridgesampling/R/bridge_sampler_warp3.R | 694 ++-- bridgesampling-1.2-1/bridgesampling/R/error_measures.R | 176 - bridgesampling-1.2-1/bridgesampling/R/ier-data.R | 32 bridgesampling-1.2-1/bridgesampling/R/logml.R | 57 bridgesampling-1.2-1/bridgesampling/R/post_prob.R | 305 + bridgesampling-1.2-1/bridgesampling/R/turtles-data.R | 64 bridgesampling-1.2-1/bridgesampling/build/partial.rdb |binary bridgesampling-1.2-1/bridgesampling/build/vignette.rds |binary bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_jags.R | 348 +- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_jags.Rmd | 452 +- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_jags.html | 753 ++-- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_nimble.R | 228 - bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_nimble.Rmd | 322 - bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_nimble.html | 592 +-- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_stan.R | 244 - bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_stan.Rmd | 328 +- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_stan.html | 606 +-- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_paper.pdf |binary bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_paper.pdf.asis | 4 bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_paper_extended.pdf |binary bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_paper_extended.pdf.asis | 4 bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_stan_ttest.R | 274 - bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_stan_ttest.Rmd | 388 +- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_stan_ttest.html | 671 +--- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_tutorial.pdf |binary bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_tutorial.pdf.asis | 4 bridgesampling-1.2-1/bridgesampling/man/bf.Rd | 138 bridgesampling-1.2-1/bridgesampling/man/bridge-methods.Rd | 78 bridgesampling-1.2-1/bridgesampling/man/bridge_sampler.Rd | 1191 +++---- bridgesampling-1.2-1/bridgesampling/man/error_measures.Rd | 110 bridgesampling-1.2-1/bridgesampling/man/ier.Rd | 344 +- bridgesampling-1.2-1/bridgesampling/man/logml.Rd | 54 bridgesampling-1.2-1/bridgesampling/man/post_prob.Rd | 198 - bridgesampling-1.2-1/bridgesampling/man/turtles.Rd | 326 +- bridgesampling-1.2-1/bridgesampling/tests/testthat.R | 8 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bf.R | 134 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler.R | 566 +-- bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler_CmdStanMCMC.R |only bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler_Rcpp.R | 118 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler_Rcpp_parallel.R | 124 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler_mcmc.list.R | 723 ++-- bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler_parallel.R | 150 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler_print_method.R | 102 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler_summary_method.R | 132 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-iterative-scheme-mcse.R |only bridgesampling-1.2-1/bridgesampling/tests/testthat/test-log_posterior_cmdstan.R |only bridgesampling-1.2-1/bridgesampling/tests/testthat/test-nimble_bridge_sampler.R | 117 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-post_prob.R | 72 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-stan_bridge_sampler_basic.R | 370 +- bridgesampling-1.2-1/bridgesampling/tests/testthat/test-stan_bridge_sampler_bugs.R | 440 +- bridgesampling-1.2-1/bridgesampling/tests/testthat/test-stanreg_bridge_sampler_basic.R | 76 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-vignette_example_jags.R | 556 +-- bridgesampling-1.2-1/bridgesampling/tests/testthat/test-vignette_example_nimble.R | 440 +- bridgesampling-1.2-1/bridgesampling/tests/testthat/test-vignette_example_stan.R | 460 +- bridgesampling-1.2-1/bridgesampling/tests/testthat/test-vignette_stan_ttest.R | 300 - bridgesampling-1.2-1/bridgesampling/tests/testthat/unnormalized_normal_density.cpp | 42 bridgesampling-1.2-1/bridgesampling/tests/testthat/unnormalized_normal_density_mu.cpp | 44 bridgesampling-1.2-1/bridgesampling/vignettes/bridgesampling_example_jags.Rmd | 452 +- bridgesampling-1.2-1/bridgesampling/vignettes/bridgesampling_example_nimble.Rmd | 322 - bridgesampling-1.2-1/bridgesampling/vignettes/bridgesampling_example_stan.Rmd | 328 +- bridgesampling-1.2-1/bridgesampling/vignettes/bridgesampling_paper.pdf.asis | 4 bridgesampling-1.2-1/bridgesampling/vignettes/bridgesampling_paper_extended.pdf.asis | 4 bridgesampling-1.2-1/bridgesampling/vignettes/bridgesampling_stan_ttest.Rmd | 388 +- bridgesampling-1.2-1/bridgesampling/vignettes/bridgesampling_tutorial.pdf.asis | 4 75 files changed, 10078 insertions(+), 9259 deletions(-)
More information about bridgesampling at CRAN
Permanent link
Title: Agricultural Datasets
Description: Datasets from books, papers, and websites related to
agriculture. Example graphics and analyses are included. Data come
from small-plot trials, multi-environment trials, uniformity trials,
yield monitors, and more.
Author: Kevin Wright [aut, cre, cph]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between agridat versions 1.25 dated 2025-10-08 and 1.26 dated 2025-11-19
DESCRIPTION | 6 - MD5 | 32 +++++---- NEWS.md | 8 ++ build/vignette.rds |binary data/kirk.potato.uniformity.txt |only data/wehner.cucumber.uniformity.txt |only inst/doc/agridat_uniformity_data.Rmd | 109 ++++++++++++++++++++++++++++++---- inst/doc/agridat_uniformity_data.html | 82 ++++++++++++++++++++++--- man/agridat.Rd | 2 man/crossa.wheat.Rd | 6 - man/gorski.oats.uniformity.Rd | 2 man/kirk.potato.Rd | 1 man/kirk.potato.uniformity.Rd |only man/kotowski.potato.uniformity.Rd | 3 man/larsen.timothy.uniformity.Rd | 4 - man/ridout.appleshoots.Rd | 3 man/stroup.splitplot.Rd | 2 man/wehner.cucumber.uniformity.Rd |only vignettes/agridat_uniformity_data.Rmd | 109 ++++++++++++++++++++++++++++++---- 19 files changed, 308 insertions(+), 61 deletions(-)