Title: Automatic Plotting of Many Graphs
Description: Visual exploration and presentation of networks should not be difficult.
This package includes functions for plotting networks and network-related metrics with sensible and pretty defaults.
It includes 'ggplot2'-based plot methods for many popular network package classes.
It also includes some novel layout algorithms, and options for straightforward, consistent themes.
Author: James Hollway [cre, aut, ctb] ,
Henrique Sposito [ctb]
Maintainer: James Hollway <james.hollway@graduateinstitute.ch>
Diff between autograph versions 0.4.1 dated 2025-09-11 and 0.5.0 dated 2025-11-19
autograph-0.4.1/autograph/R/plot_graphr.R |only autograph-0.4.1/autograph/R/plot_graphs.R |only autograph-0.4.1/autograph/R/plot_grapht.R |only autograph-0.4.1/autograph/tests/testthat/test-plot_graphr.R |only autograph-0.5.0/autograph/DESCRIPTION | 14 - autograph-0.5.0/autograph/MD5 | 60 +++--- autograph-0.5.0/autograph/NAMESPACE | 5 autograph-0.5.0/autograph/NEWS.md | 38 +++ autograph-0.5.0/autograph/R/autograph-package.R | 5 autograph-0.5.0/autograph/R/autograph_utilities.R | 25 -- autograph-0.5.0/autograph/R/data_precooked.R | 14 + autograph-0.5.0/autograph/R/graph_edges.R |only autograph-0.5.0/autograph/R/graph_labels.R |only autograph-0.5.0/autograph/R/graph_layout.R |only autograph-0.5.0/autograph/R/graph_nodes.R |only autograph-0.5.0/autograph/R/graphr.R |only autograph-0.5.0/autograph/R/graphs.R |only autograph-0.5.0/autograph/R/grapht.R |only autograph-0.5.0/autograph/R/plot_convergence.R | 15 - autograph-0.5.0/autograph/R/plot_diagnostics.R |only autograph-0.5.0/autograph/R/plot_manynet.R | 16 + autograph-0.5.0/autograph/R/plot_migraph.R | 8 autograph-0.5.0/autograph/R/theme_palettes.R | 54 +++++ autograph-0.5.0/autograph/R/theme_set.R | 97 ++++------ autograph-0.5.0/autograph/R/zzz.R | 12 - autograph-0.5.0/autograph/README.md | 13 - autograph-0.5.0/autograph/data/goldfish_changepoints.rda |only autograph-0.5.0/autograph/data/goldfish_outliers.rda |only autograph-0.5.0/autograph/inst/tutorials/tutorial2/visualisation.Rmd | 13 + autograph-0.5.0/autograph/inst/tutorials/tutorial2/visualisation.html | 75 +++++-- autograph-0.5.0/autograph/man/ag_call.Rd | 21 ++ autograph-0.5.0/autograph/man/figures/README-theme-opts-1.png |only autograph-0.5.0/autograph/man/figures/README-theme-opts-2.png |only autograph-0.5.0/autograph/man/made_earlier.Rd | 10 + autograph-0.5.0/autograph/man/plot_adequacy.Rd |only autograph-0.5.0/autograph/man/plot_graphr.Rd | 4 autograph-0.5.0/autograph/man/plot_graphs.Rd | 2 autograph-0.5.0/autograph/man/plot_grapht.Rd | 4 autograph-0.5.0/autograph/man/theme_set.Rd | 13 + autograph-0.5.0/autograph/tests/testthat/test-graphr.R |only 40 files changed, 360 insertions(+), 158 deletions(-)
Title: OLS, Moderated, Logistic, and Count Regressions Made Simple
Description: Provides SPSS- and SAS-like output for least squares multiple regression,
logistic regression, and count variable regressions. Detailed output is also provided for
OLS moderated regression, interaction plots, and Johnson-Neyman
regions of significance. The output includes standardized
coefficients, partial and semi-partial correlations, collinearity diagnostics,
plots of residuals, and detailed information about simple slopes for interactions.
The output for some functions includes Bayes Factors and, if requested,
regression coefficients from Bayesian Markov Chain Monte Carlo analyses.
There are numerous options for model plots.
The REGIONS_OF_SIGNIFICANCE function also provides
Johnson-Neyman regions of significance and plots of interactions for both lm
and lme models. There is also a function for partial and semipartial
correlations and a function for conducting Cohen's
set correlation analyses.
Author: Brian P. O'Connor [aut, cre]
Maintainer: Brian P. O'Connor <brian.oconnor@ubc.ca>
Diff between SIMPLE.REGRESSION versions 0.2.7 dated 2025-09-26 and 0.2.8 dated 2025-11-19
DESCRIPTION | 11 +- MD5 | 24 ++-- NAMESPACE | 7 - R/COUNT_REGRESSION.R | 202 +++++++++++++++++++++++++------------ R/LOGISTIC_REGRESSION.R | 242 ++++++++++++++++++++++++++++----------------- R/OLS_REGRESSION.R | 124 +++++++++++++++++------ R/PARTIAL_COR.R | 12 +- R/SET_CORRELATION.R | 86 +++++++-------- R/utilities_boc.R | 34 ++++++ man/COUNT_REGRESSION.Rd | 34 +++++- man/LOGISTIC_REGRESSION.Rd | 27 +++++ man/OLS_REGRESSION.Rd | 12 +- man/PARTIAL_COR.Rd | 52 +++++++++ 13 files changed, 600 insertions(+), 267 deletions(-)
More information about SIMPLE.REGRESSION at CRAN
Permanent link
Title: Modeling Over Dispersed Binomial Outcome Data Using BMD and ABD
Description: Contains Probability Mass Functions, Cumulative Mass
Functions, Negative Log Likelihood value, parameter estimation and
modeling data using Binomial Mixture Distributions (BMD) (Manoj et al
(2013) <doi:10.5539/ijsp.v2n2p24>) and Alternate Binomial
Distributions (ABD) (Paul (1985) <doi:10.1080/03610928508828990>),
also Journal article to use the package(<doi:10.21105/joss.01505>).
Author: Amalan Mahendran [aut, cre] ,
Pushpakanthie Wijekoon [aut, ctb]
Maintainer: Amalan Mahendran <amalan0595@gmail.com>
Diff between fitODBOD versions 1.5.4 dated 2024-11-20 and 1.5.5 dated 2025-11-19
DESCRIPTION | 13 +++++++------ MD5 | 10 +++++----- R/BetaCorrBin.R | 8 ++++---- build/partial.rdb |binary man/dBetaCorrBin.Rd | 4 ++-- man/pBetaCorrBin.Rd | 4 ++-- 6 files changed, 20 insertions(+), 19 deletions(-)
Title: Simple Presentation of Estimated Exponential Semi-Variograms
Description: User friendly interface based on the R package 'gstat' to fit
exponential parametric models to empirical semi-variograms in order to
model the spatial correlation structure of health data. Geo-located
health outcomes of survey participants may be used to model spatial
effects on health in an ego-centred approach. The package contains a
range of functions to help explore the spatial structure of the data
as well as visualize the fit of exponential models for various
metaparameter combinations with respect to the number of lag intervals
and maximal distance. Furthermore, the outcome of interest can be
adjusted for covariates by fitting a linear regression in a
preliminary step before the semi-variogram fitting process.
Author: Julia Dyck [aut, cre],
Odile Sauzet [aut],
Jan-Ole Koslik [aut]
Maintainer: Julia Dyck <j.dyck@uni-bielefeld.de>
Diff between EgoCor versions 1.3.3 dated 2025-05-19 and 1.3.4 dated 2025-11-19
DESCRIPTION | 6 ++--- MD5 | 8 +++---- build/partial.rdb |binary inst/REFERENCES.bib | 4 +-- inst/doc/Intro_to_EgoCor.html | 47 +++++++++++++++++++++--------------------- 5 files changed, 33 insertions(+), 32 deletions(-)
Title: Causal Analysis of Observational Time-to-Event Data
Description: Implements target trial emulation methods to apply randomized
clinical trial design and analysis in an observational setting. Using
marginal structural models, it can estimate intention-to-treat and
per-protocol effects in emulated trials using electronic health
records. A description and application of the method can be found in
Danaei et al (2013) <doi:10.1177/0962280211403603>.
Author: Isaac Gravestock [aut, cre] ,
Li Su [aut],
Roonak Rezvani [aut] ,
Julia Moesch [aut],
Medical Research Council [fnd],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Isaac Gravestock <isaac.gravestock@roche.com>
Diff between TrialEmulation versions 0.0.4.5 dated 2025-06-13 and 0.0.4.8 dated 2025-11-19
DESCRIPTION | 8 - MD5 | 14 +- NEWS.md | 10 + inst/doc/Getting-Started.Rmd | 2 inst/doc/Getting-Started.html | 193 ++++++++++++++++----------------- inst/doc/new-interface.html | 8 - tests/testthat/test-data_preparation.R | 8 - vignettes/Getting-Started.Rmd | 2 8 files changed, 124 insertions(+), 121 deletions(-)
More information about TrialEmulation at CRAN
Permanent link
Title: Visualization of Spline Effects in GAM and GLM Models
Description: Creates 'ggplot2'-based visualizations of smooth effects from GAM (Generalized Additive Models)
fitted with 'mgcv' and spline effects from GLM (Generalized Linear Models). Supports interaction terms
and provides hazard ratio plots with histograms for survival analysis.
Wood (2017, ISBN:9781498728331) provides comprehensive methodology for generalized additive models.
Author: Jinseob Kim [aut, cre] ,
Zarathu [cph, fnd]
Maintainer: Jinseob Kim <jinseob2kim@gmail.com>
Diff between splineplot versions 0.2.0 dated 2025-10-24 and 0.2.1 dated 2025-11-19
DESCRIPTION | 7 +++-- MD5 | 10 +++---- NEWS.md | 9 ++++++ R/splineplot.R | 14 +++++++++- README.md | 10 +++---- inst/doc/getting-started.html | 56 +++++++++++++++++++++--------------------- 6 files changed, 63 insertions(+), 43 deletions(-)
Title: Headers and Static Libraries for 'HDF5'
Description: 'HDF5' (Hierarchical Data Format 5) is a high-performance
library and file format for storing and managing large, complex
data. This package provides the static libraries and headers for
the 'HDF5' 'C' library (release 1.14.6). It is intended for R
package developers to use in the 'LinkingTo' field, which
eliminates the need for users to install system-level 'HDF5'
dependencies. This build is compiled with thread-safety enabled
and supports dynamic loading of external compression filters.
'HDF5' is developed by 'The HDF Group' <https://www.hdfgroup.org/>.
Author: Daniel P. Smith [aut, cre] ,
The HDF Group [cph] ,
Jean-loup Mark [cph] ,
Gailly Adler [cph]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
This is a re-admission after prior archival of version 1.14.6.7 dated 2025-11-17
Diff between hdf5lib versions 1.14.6.7 dated 2025-11-17 and 1.14.6.8 dated 2025-11-19
DESCRIPTION | 7 ++++--- MD5 | 15 ++++++++------- NEWS.md | 8 ++++++++ R/flags.r | 35 ++++++++++++++++++++++++++--------- README.md | 27 +++++++++++++-------------- configure | 25 ++++++++++++++++++------- configure.win | 10 +++++----- man/figures |only man/ld_flags.Rd | 2 +- 9 files changed, 83 insertions(+), 46 deletions(-)
Title: Bindings to 'GDAL'
Description: API bindings to the Geospatial Data Abstraction Library ('GDAL',
<https://gdal.org>). Implements the 'GDAL' Raster and Vector Data Models.
Bindings are implemented with 'Rcpp' modules. Exposed C++ classes and
stand-alone functions wrap much of the 'GDAL' API and provide additional
functionality. Calling signatures resemble the native C, C++ and Python APIs
provided by the 'GDAL' project. Class 'GDALRaster' encapsulates a
'GDALDataset' and its raster band objects. Class 'GDALVector' encapsulates
an 'OGRLayer' and the 'GDALDataset' that contains it. Initial bindings are
provided to the unified 'gdal' command line interface added in 'GDAL' 3.11.
C++ stand-alone functions provide bindings to most 'GDAL' "traditional"
raster and vector utilities, including 'OGR' facilities for vector
geoprocessing, several algorithms, as well as the Geometry API ('GEOS' via
'GDAL' headers), the Spatial Reference Systems API, and methods for
coordinate transformation. Bindings to the Virtual Systems In [...truncated...]
Author: Chris Toney [aut, cre] ,
Michael D. Sumner [ctb],
Frank Warmerdam [ctb, cph] ,
Even Rouault [ctb, cph] ,
Marius Appel [ctb, cph] ,
Daniel James [ctb, cph] ,
Peter Dimov [ctb, cph]
Maintainer: Chris Toney <jctoney@gmail.com>
Diff between gdalraster versions 2.2.1 dated 2025-08-29 and 2.3.0 dated 2025-11-19
DESCRIPTION | 10 MD5 | 174 ++--- NAMESPACE | 1 NEWS.md | 53 + R/RcppExports.R | 395 ++++++++++- R/cmb_table.R | 9 R/display.R | 52 + R/gdal_cli.R | 203 +++-- R/gdal_helpers.R | 84 ++ R/gdal_mdim.R |only R/gdalalg.R | 43 + R/gdalraster.R | 142 +++- R/gdalraster_proc.R | 99 ++ R/geom.R | 465 +++++++++++-- R/ogr_manage.R | 2 README.md | 32 build/vignette.rds |binary configure | 248 +++++++ configure.ac | 35 - inst/COPYRIGHTS | 3 inst/doc/gdal-config-quick-ref.Rmd | 2 inst/doc/gdal-config-quick-ref.html | 5 inst/doc/raster-api-tutorial.html | 23 inst/doc/raster-attribute-tables.html | 111 +-- inst/extdata/byte.nc |only man/CmbTable-class.Rd | 9 man/GDALAlg-class.Rd | 45 + man/GDALRaster-class.Rd | 143 +++- man/bbox_to_wkt.Rd | 1 man/combine.Rd | 4 man/g_factory.Rd | 63 + man/g_query.Rd | 11 man/g_unary_op.Rd | 121 ++- man/g_util.Rd | 31 man/g_wk2wk.Rd | 6 man/gdal_cli.Rd | 45 + man/gdal_get_driver_md.Rd |only man/gdalraster-package.Rd | 15 man/make_chunk_index.Rd |only man/mdim_as_classic.Rd |only man/mdim_info.Rd |only man/mdim_translate.Rd |only man/ogr2ogr.Rd | 3 man/ogrinfo.Rd | 2 man/pixel_extract.Rd | 2 man/plot_geom.Rd |only man/polygonize.Rd | 7 man/rasterToVRT.Rd | 22 man/vsi_get_file_metadata.Rd | 2 man/vsi_stat.Rd | 48 + src/RcppExports.cpp | 222 ++++++ src/cmb_table.cpp | 97 +- src/cmb_table.h | 26 src/gdal_dt.cpp | 6 src/gdal_dt.h | 9 src/gdal_exp.cpp | 682 +++++++++++++------- src/gdal_mdim.cpp |only src/gdal_vsi.cpp | 229 ++++-- src/gdal_vsi.h | 12 src/gdalalg.cpp | 984 +++++++++++++++++++++------- src/gdalalg.h | 35 - src/gdalraster.cpp | 1120 +++++++++++++++++++++------------ src/gdalraster.h | 154 ++-- src/gdalraster_types.h | 6 src/gdalvector.cpp | 494 +++++++------- src/gdalvector.h | 106 +-- src/geom_api.cpp | 618 ++++++++++++++---- src/geom_api.h | 30 src/ogr_util.cpp | 965 +++++++++++++++------------- src/ogr_util.h | 151 ---- src/progress_r.cpp | 1 src/rcpp_util.cpp | 31 src/rcpp_util.h | 30 src/running_stats.cpp | 37 - src/running_stats.h | 9 src/srs_api.cpp | 51 - src/srs_api.h | 6 src/transform.cpp | 105 +-- src/transform.h | 8 src/vsifile.cpp | 55 - src/vsifile.h | 14 tests/testthat/test-GDALAlg-class.R | 286 ++++++++ tests/testthat/test-GDALRaster-class.R | 288 ++++++++ tests/testthat/test-GDALVector-class.R | 12 tests/testthat/test-display.R | 8 tests/testthat/test-gdal_cli.R | 8 tests/testthat/test-gdal_exp.R | 11 tests/testthat/test-gdal_helpers.R | 12 tests/testthat/test-gdal_mdim.R |only tests/testthat/test-gdal_vsi.R | 10 tests/testthat/test-gdalraster_proc.R | 92 ++ tests/testthat/test-geom.R | 137 ++++ vignettes/gdal-config-quick-ref.Rmd | 2 93 files changed, 7057 insertions(+), 2873 deletions(-)
Title: Cox Regression (Proportional Hazards Model) with Multiple Causes
and Mixed Effects
Description: Extends the Cox model to events with more than one causes. Also supports random and fixed effects, tied events, and time-varying variables. Model details are provided in Peng et al. (2018) <doi:10.1509/jmr.14.0643>.
Author: Jing Peng [aut, cre]
Maintainer: Jing Peng <pengjing@live.com>
Diff between CoxPlus versions 1.1.1 dated 2015-10-24 and 1.5.6 dated 2025-11-19
DESCRIPTION | 21 +- MD5 | 20 +- NAMESPACE | 4 R/CoxPlus.R |only R/cumHazard.R | 37 ++--- R/fastCox.R | 68 ++++++--- inst |only man/CoxPlus.Rd | 48 ------ man/fastCox.Rd |only src/Makevars | 9 - src/Makevars.win | 1 src/RcppExports.cpp |only src/coxReg.cpp | 375 ++++++++++++++++++++++++++++++---------------------- 13 files changed, 327 insertions(+), 256 deletions(-)
Title: Bayesian Estimation and Forecasting of Age-Specific Rates
Description: Fast Bayesian estimation and forecasting of age-specific
rates, probabilities, and means, based on 'Template Model Builder'.
Author: John Bryant [aut, cre],
Junni Zhang [aut],
Bayesian Demography Limited [cph]
Maintainer: John Bryant <john@bayesiandemography.com>
Diff between bage versions 0.10.1 dated 2025-11-17 and 0.10.2 dated 2025-11-19
DESCRIPTION | 6 +-- MD5 | 34 +++++++++--------- NEWS.md | 14 +++++++ R/util.R | 58 ++++++++++++++++---------------- build/vignette.rds |binary inst/doc/vig01_intro.Rmd | 52 ++++++++++++++-------------- inst/doc/vig01_intro.html | 55 +++++++++++++++--------------- tests/testthat/test-util.R | 11 ++---- vignettes/articles/vig02_math.Rmd | 4 +- vignettes/articles/vig03_priors.Rmd | 4 +- vignettes/articles/vig04_svd.Rmd | 4 +- vignettes/articles/vig05_bdef.Rmd | 4 +- vignettes/articles/vig06_mortality.Rmd | 4 +- vignettes/articles/vig07_simulation.Rmd | 4 +- vignettes/articles/vig08_workflow.Rmd | 4 +- vignettes/articles/vig09_covariates.Rmd | 4 +- vignettes/articles/vig10_datamod.Rmd | 4 +- vignettes/vig01_intro.Rmd | 52 ++++++++++++++-------------- 18 files changed, 168 insertions(+), 150 deletions(-)
Title: Computes Adaptable Radial Axes Mappings
Description: Computes low-dimensional point representations of high-dimensional numerical data according to the data visualization method Adaptable Radial Axes described in: Manuel Rubio-Sánchez, Alberto Sanchez, and Dirk J. Lehmann (2017) "Adaptable radial axes plots for improved multivariate data visualization" <doi:10.1111/cgf.13196>.
Author: Manuel Rubio-Sanchez [aut, cre, cph] ,
Dirk J. Lehmann [ctb] ,
Miguel Angel Munoz Mohedano [ctb] ,
Alberto Sanchez Campos [ctb] ,
Cristina Soguero-Ruiz [ctb]
Maintainer: Manuel Rubio-Sanchez <manuel.rubio@urjc.es>
Diff between aramappings versions 0.1.0 dated 2025-11-18 and 0.1.1 dated 2025-11-19
aramappings-0.1.0/aramappings/man/figures/readme_autompg_unconstrained_l2.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_exact_l1_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_exact_l2_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_exact_linf_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_ordered_l1_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_ordered_l2_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_ordered_linf_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_unconstrained_l1_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_unconstrained_l2_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_autompg_unconstrained_linf_bb.svg |only aramappings-0.1.0/aramappings/man/figures/vignette_cereals_ara_bb.svg |only aramappings-0.1.1/aramappings/DESCRIPTION | 6 - aramappings-0.1.1/aramappings/MD5 | 34 ++++------ aramappings-0.1.1/aramappings/NEWS.md | 8 ++ aramappings-0.1.1/aramappings/README.md | 6 - aramappings-0.1.1/aramappings/inst/doc/intro_to_aramappings.R | 12 +-- aramappings-0.1.1/aramappings/inst/doc/intro_to_aramappings.Rmd | 12 +-- aramappings-0.1.1/aramappings/inst/doc/intro_to_aramappings.html | 22 +++--- aramappings-0.1.1/aramappings/man/figures/readme_autompg_unconstrained_l2.jpg |only aramappings-0.1.1/aramappings/man/figures/vignette_autompg_exact_l1_bb.jpg |only aramappings-0.1.1/aramappings/man/figures/vignette_autompg_exact_l2_bb.jpg |only aramappings-0.1.1/aramappings/man/figures/vignette_autompg_ordered_l2_bb.jpg |only aramappings-0.1.1/aramappings/man/figures/vignette_autompg_unconstrained_l1_bb.jpg |only aramappings-0.1.1/aramappings/man/figures/vignette_autompg_unconstrained_l2_bb.jpg |only aramappings-0.1.1/aramappings/man/figures/vignette_cereals_ara_bb.jpg |only aramappings-0.1.1/aramappings/tests/testthat/test-ara_unconstrained_l1.R | 2 aramappings-0.1.1/aramappings/vignettes/intro_to_aramappings.Rmd | 12 +-- 27 files changed, 59 insertions(+), 55 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-14 0.1
Title: Association Among Disease Counts and Socio-Environmental Factors
Description: Estimation of association between disease or death counts (e.g. COVID-19) and socio-environmental risk factors using a zero-inflated Bayesian spatiotemporal model. Non-spatiotemporal models and/or models without zero-inflation are also included for comparison. Functions to produce corresponding maps are also included. See Chakraborty et al. (2022) <doi:10.1007/s13253-022-00487-1> for more details on the method.
Author: Suman Majumder [cre, aut, cph],
Yoon-Bae Jun [aut, cph],
Sounak Chakraborty [ctb],
Chae-Young Lim [ctb],
Tanujit Dey [ctb]
Maintainer: Suman Majumder <smajumd2@gmail.com>
Diff between BSTZINB versions 2.0.0 dated 2025-01-30 and 2.0.1 dated 2025-11-19
DESCRIPTION | 10 MD5 | 35 +- NAMESPACE | 4 NEWS.md | 6 R/BNB.R | 1 R/BSTNB.R | 1 R/BSTZINB.R | 5 R/BZINB.R | 2 R/aux_func.R | 48 +- R/methods.R |only R/synth_dat_IA.R |only data/synth_dat_IA.rda |only inst/doc/BSTZINB_vignette.R | 21 - inst/doc/BSTZINB_vignette.Rmd | 21 - inst/doc/BSTZINB_vignette.html | 672 ++++++++++++++++++++--------------------- man/compute_NB_DIC.Rd | 8 man/compute_ZINB_DIC.Rd | 8 man/print.DCMB.Rd |only man/print.summ.DCMB.Rd |only man/summary.DCMB.Rd |only man/synth_dat_IA.Rd |only vignettes/BSTZINB_vignette.Rmd | 21 - 22 files changed, 462 insertions(+), 401 deletions(-)
Title: Helper Functions to Install and Maintain TeX Live, and Compile
LaTeX Documents
Description: Helper functions to install and maintain the 'LaTeX' distribution
named 'TinyTeX' (<https://yihui.org/tinytex/>), a lightweight, cross-platform,
portable, and easy-to-maintain version of 'TeX Live'. This package also
contains helper functions to compile 'LaTeX' documents, and install missing
'LaTeX' packages automatically.
Author: Yihui Xie [aut, cre, cph] ,
Posit Software, PBC [cph, fnd],
Christophe Dervieux [ctb] ,
Devon Ryan [ctb] ,
Ethan Heinzen [ctb],
Fernando Cagua [ctb]
Maintainer: Yihui Xie <xie@yihui.name>
Diff between tinytex versions 0.57 dated 2025-04-15 and 0.58 dated 2025-11-19
DESCRIPTION | 16 +++++++++------- MD5 | 10 +++++----- R/latex.R | 6 ++++++ man/check_installed.Rd | 2 +- man/tlmgr.Rd | 2 +- tests/test-cran/test-latex.R | 1 + 6 files changed, 23 insertions(+), 14 deletions(-)
Title: Functions to Support Extension Education Program Evaluation
Description: Functions and datasets to support Summary and Analysis of
Extension Program Evaluation in R, and An R
Companion for the Handbook of Biological Statistics.
Vignettes are available at <https://rcompanion.org>.
Author: Salvatore Mangiafico [aut, cre]
Maintainer: Salvatore Mangiafico <mangiafico@njaes.rutgers.edu>
Diff between rcompanion versions 2.5.0 dated 2025-02-13 and 2.5.1 dated 2025-11-19
DESCRIPTION | 14 +++++++------- MD5 | 20 ++++++++++---------- NEWS.md | 12 ++++++++++++ R/correlation.r | 3 +-- R/mangiaficoD.r | 42 +++++++++++++++++++++++++++++++----------- R/multiMangiaficoD.r | 22 ++++++++++++++++++---- R/nagelkerke.r | 2 +- inst/CITATION | 4 ++-- man/correlation.Rd | 2 +- man/mangiaficoD.Rd | 24 +++++++++++++++++------- man/multiMangiaficoD.Rd | 11 ++++++++++- 11 files changed, 110 insertions(+), 46 deletions(-)
Title: General Smoothing Splines
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
Author: Chong Gu [aut, cre]
Maintainer: Chong Gu <chong@purdue.edu>
Diff between gss versions 2.2-9 dated 2025-04-13 and 2.2-10 dated 2025-11-19
ChangeLog | 8 +++++++- DESCRIPTION | 8 ++++---- MD5 | 7 ++++--- R/family.R | 3 ++- src/dchdc0.f |only 5 files changed, 17 insertions(+), 9 deletions(-)
Title: Advanced and Fast Data Transformation
Description: A large C/C++-based package for advanced data transformation and
statistical computing in R that is extremely fast, class-agnostic, robust, and
programmer friendly. Core functionality includes a rich set of S3 generic grouped
and weighted statistical functions for vectors, matrices and data frames, which
provide efficient low-level vectorizations, OpenMP multithreading, and skip missing
values by default. These are integrated with fast grouping and ordering algorithms
(also callable from C), and efficient data manipulation functions. The package also
provides a flexible and rigorous approach to time series and panel data in R, fast
functions for data transformation and common statistical procedures, detailed
(grouped, weighted) summary statistics, powerful tools to work with nested data,
fast data object conversions, functions for memory efficient R programming, and
helpers to effectively deal with variable labels, attributes, and missing data. It
seamlessly supports base R objects/cla [...truncated...]
Author: Sebastian Krantz [aut, cre] ,
Matt Dowle [ctb],
Arun Srinivasan [ctb],
Morgan Jacob [ctb],
Dirk Eddelbuettel [ctb],
Laurent Berge [ctb],
Kevin Tappe [ctb],
Alina Cherkas [ctb],
R Core Team and contributors worldwide [ctb],
Martyn Plummer [cph],
1999- [...truncated...]
Maintainer: Sebastian Krantz <sebastian.krantz@graduateinstitute.ch>
Diff between collapse versions 2.1.4 dated 2025-10-24 and 2.1.5 dated 2025-11-19
DESCRIPTION | 8 +++---- MD5 | 30 ++++++++++++++-------------- NEWS.md | 4 +++ R/collap.R | 31 +++++++++++++++-------------- inst/doc/collapse_and_sf.html | 5 ++-- inst/doc/collapse_documentation.html | 4 +-- inst/doc/collapse_for_tidyverse_users.html | 9 ++++---- inst/doc/collapse_object_handling.html | 9 ++++---- inst/doc/developing_with_collapse.html | 5 ++-- man/pivot.Rd | 2 - src/ffirst.c | 3 -- src/flast.c | 3 -- src/fmean.c | 2 - src/fmode.c | 4 +-- src/fndistinct.c | 2 - src/fsum.c | 2 - 16 files changed, 66 insertions(+), 57 deletions(-)
Title: Summarise and Visualise Characteristics of Patients in the OMOP
CDM
Description: Summarise and visualise the characteristics of patients in data
mapped to the Observational Medical Outcomes Partnership (OMOP) common data
model (CDM).
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Mike Du [ctb] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Marta Alcalde [aut]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between CohortCharacteristics versions 1.0.2 dated 2025-10-23 and 1.1.0 dated 2025-11-19
DESCRIPTION | 12 MD5 | 90 NEWS.md | 16 R/documentationHelpers.R | 10 R/plot.R | 15 R/plotCharacteristics.R | 7 R/plotCohortAttrition.R | 4 R/plotCohortCount.R | 6 R/plotCohortOverlap.R | 5 R/plotCohortTiming.R | 6 R/plotComparedLargeScaleCharacteristics.R | 6 R/plotLargeScaleCharacteristics.R | 6 R/summariseCharacteristics.R | 96 R/summariseLargeScaleCharacteristics.R | 72 R/table.R | 8 R/tableCharacteristics.R | 5 R/tableCohortAttrition.R | 2 R/tableCohortCount.R | 2 R/tableCohortOverlap.R | 2 R/tableCohortTiming.R | 2 R/tableLargeScaleCharacteristics.R | 7 inst/doc/summarise_characteristics.Rmd | 3 inst/doc/summarise_characteristics.html | 3325 ++++++++------- inst/doc/summarise_cohort_overlap.html | 582 +- inst/doc/summarise_cohort_timing.html | 674 +-- inst/doc/summarise_large_scale_characteristics.html | 543 +- man/plotCharacteristics.Rd | 7 man/plotCohortCount.Rd | 14 man/plotCohortOverlap.Rd | 7 man/plotCohortTiming.Rd | 9 man/plotComparedLargeScaleCharacteristics.Rd | 9 man/plotDoc.Rd | 6 man/plotLargeScaleCharacteristics.Rd | 9 man/summariseCharacteristics.Rd | 10 man/tableCharacteristics.Rd | 7 man/tableCohortAttrition.Rd | 7 man/tableCohortCount.Rd | 7 man/tableCohortOverlap.Rd | 7 man/tableCohortTiming.Rd | 7 man/tableDoc.Rd | 6 man/tableTopLargeScaleCharacteristics.Rd | 13 tests/testthat/test-plotCharacteristics.R | 24 tests/testthat/test-summariseCharacteristics.R | 37 tests/testthat/test-summariseCohortCodelist.R | 3 tests/testthat/test-summariseLargeScaleCharacteristics.R | 23 vignettes/summarise_characteristics.Rmd | 3 46 files changed, 3212 insertions(+), 2509 deletions(-)
More information about CohortCharacteristics at CRAN
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Title: Bridge Sampling for Marginal Likelihoods and Bayes Factors
Description: Provides functions for estimating marginal likelihoods, Bayes
factors, posterior model probabilities, and normalizing constants in general,
via different versions of bridge sampling (Meng & Wong, 1996,
<https://www3.stat.sinica.edu.tw/statistica/j6n4/j6n43/j6n43.htm>).
Gronau, Singmann, & Wagenmakers (2020) <doi:10.18637/jss.v092.i10>.
Author: Quentin F. Gronau [aut, cre] ,
Henrik Singmann [aut] ,
Jonathan J. Forster [ctb],
Eric-Jan Wagenmakers [ths],
The JASP Team [ctb],
Jiqiang Guo [ctb],
Jonah Gabry [ctb],
Ben Goodrich [ctb],
Kees Mulder [ctb],
Perry de Valpine [ctb],
Aki Vehtari [ctb], [...truncated...]
Maintainer: Quentin F. Gronau <Quentin.F.Gronau@gmail.com>
Diff between bridgesampling versions 1.1-2 dated 2021-04-16 and 1.2-1 dated 2025-11-19
bridgesampling-1.1-2/bridgesampling/NEWS |only bridgesampling-1.2-1/bridgesampling/DESCRIPTION | 27 bridgesampling-1.2-1/bridgesampling/MD5 | 143 bridgesampling-1.2-1/bridgesampling/NAMESPACE | 101 bridgesampling-1.2-1/bridgesampling/NEWS.md |only bridgesampling-1.2-1/bridgesampling/R/bf.R | 406 +- bridgesampling-1.2-1/bridgesampling/R/bridge_methods.R | 332 +- bridgesampling-1.2-1/bridgesampling/R/bridge_sampler.R | 1629 +++++----- bridgesampling-1.2-1/bridgesampling/R/bridge_sampler_internals.R | 661 ++-- bridgesampling-1.2-1/bridgesampling/R/bridge_sampler_normal.R | 482 +- bridgesampling-1.2-1/bridgesampling/R/bridge_sampler_tools.R | 95 bridgesampling-1.2-1/bridgesampling/R/bridge_sampler_warp3.R | 694 ++-- bridgesampling-1.2-1/bridgesampling/R/error_measures.R | 176 - bridgesampling-1.2-1/bridgesampling/R/ier-data.R | 32 bridgesampling-1.2-1/bridgesampling/R/logml.R | 57 bridgesampling-1.2-1/bridgesampling/R/post_prob.R | 305 + bridgesampling-1.2-1/bridgesampling/R/turtles-data.R | 64 bridgesampling-1.2-1/bridgesampling/build/partial.rdb |binary bridgesampling-1.2-1/bridgesampling/build/vignette.rds |binary bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_jags.R | 348 +- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_jags.Rmd | 452 +- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_jags.html | 753 ++-- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_nimble.R | 228 - bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_nimble.Rmd | 322 - bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_nimble.html | 592 +-- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_stan.R | 244 - bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_stan.Rmd | 328 +- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_example_stan.html | 606 +-- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_paper.pdf |binary bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_paper.pdf.asis | 4 bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_paper_extended.pdf |binary bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_paper_extended.pdf.asis | 4 bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_stan_ttest.R | 274 - bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_stan_ttest.Rmd | 388 +- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_stan_ttest.html | 671 +--- bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_tutorial.pdf |binary bridgesampling-1.2-1/bridgesampling/inst/doc/bridgesampling_tutorial.pdf.asis | 4 bridgesampling-1.2-1/bridgesampling/man/bf.Rd | 138 bridgesampling-1.2-1/bridgesampling/man/bridge-methods.Rd | 78 bridgesampling-1.2-1/bridgesampling/man/bridge_sampler.Rd | 1191 +++---- bridgesampling-1.2-1/bridgesampling/man/error_measures.Rd | 110 bridgesampling-1.2-1/bridgesampling/man/ier.Rd | 344 +- bridgesampling-1.2-1/bridgesampling/man/logml.Rd | 54 bridgesampling-1.2-1/bridgesampling/man/post_prob.Rd | 198 - bridgesampling-1.2-1/bridgesampling/man/turtles.Rd | 326 +- bridgesampling-1.2-1/bridgesampling/tests/testthat.R | 8 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bf.R | 134 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler.R | 566 +-- bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler_CmdStanMCMC.R |only bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler_Rcpp.R | 118 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler_Rcpp_parallel.R | 124 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler_mcmc.list.R | 723 ++-- bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler_parallel.R | 150 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler_print_method.R | 102 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-bridge_sampler_summary_method.R | 132 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-iterative-scheme-mcse.R |only bridgesampling-1.2-1/bridgesampling/tests/testthat/test-log_posterior_cmdstan.R |only bridgesampling-1.2-1/bridgesampling/tests/testthat/test-nimble_bridge_sampler.R | 117 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-post_prob.R | 72 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-stan_bridge_sampler_basic.R | 370 +- bridgesampling-1.2-1/bridgesampling/tests/testthat/test-stan_bridge_sampler_bugs.R | 440 +- bridgesampling-1.2-1/bridgesampling/tests/testthat/test-stanreg_bridge_sampler_basic.R | 76 bridgesampling-1.2-1/bridgesampling/tests/testthat/test-vignette_example_jags.R | 556 +-- bridgesampling-1.2-1/bridgesampling/tests/testthat/test-vignette_example_nimble.R | 440 +- bridgesampling-1.2-1/bridgesampling/tests/testthat/test-vignette_example_stan.R | 460 +- bridgesampling-1.2-1/bridgesampling/tests/testthat/test-vignette_stan_ttest.R | 300 - bridgesampling-1.2-1/bridgesampling/tests/testthat/unnormalized_normal_density.cpp | 42 bridgesampling-1.2-1/bridgesampling/tests/testthat/unnormalized_normal_density_mu.cpp | 44 bridgesampling-1.2-1/bridgesampling/vignettes/bridgesampling_example_jags.Rmd | 452 +- bridgesampling-1.2-1/bridgesampling/vignettes/bridgesampling_example_nimble.Rmd | 322 - bridgesampling-1.2-1/bridgesampling/vignettes/bridgesampling_example_stan.Rmd | 328 +- bridgesampling-1.2-1/bridgesampling/vignettes/bridgesampling_paper.pdf.asis | 4 bridgesampling-1.2-1/bridgesampling/vignettes/bridgesampling_paper_extended.pdf.asis | 4 bridgesampling-1.2-1/bridgesampling/vignettes/bridgesampling_stan_ttest.Rmd | 388 +- bridgesampling-1.2-1/bridgesampling/vignettes/bridgesampling_tutorial.pdf.asis | 4 75 files changed, 10078 insertions(+), 9259 deletions(-)
More information about bridgesampling at CRAN
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Title: Agricultural Datasets
Description: Datasets from books, papers, and websites related to
agriculture. Example graphics and analyses are included. Data come
from small-plot trials, multi-environment trials, uniformity trials,
yield monitors, and more.
Author: Kevin Wright [aut, cre, cph]
Maintainer: Kevin Wright <kw.stat@gmail.com>
Diff between agridat versions 1.25 dated 2025-10-08 and 1.26 dated 2025-11-19
DESCRIPTION | 6 - MD5 | 32 +++++---- NEWS.md | 8 ++ build/vignette.rds |binary data/kirk.potato.uniformity.txt |only data/wehner.cucumber.uniformity.txt |only inst/doc/agridat_uniformity_data.Rmd | 109 ++++++++++++++++++++++++++++++---- inst/doc/agridat_uniformity_data.html | 82 ++++++++++++++++++++++--- man/agridat.Rd | 2 man/crossa.wheat.Rd | 6 - man/gorski.oats.uniformity.Rd | 2 man/kirk.potato.Rd | 1 man/kirk.potato.uniformity.Rd |only man/kotowski.potato.uniformity.Rd | 3 man/larsen.timothy.uniformity.Rd | 4 - man/ridout.appleshoots.Rd | 3 man/stroup.splitplot.Rd | 2 man/wehner.cucumber.uniformity.Rd |only vignettes/agridat_uniformity_data.Rmd | 109 ++++++++++++++++++++++++++++++---- 19 files changed, 308 insertions(+), 61 deletions(-)