Title: Temporal Empirical Dynamic Modeling
Description: Inferring causation from time series data through empirical dynamic modeling (EDM), with methods such as convergent cross mapping from Sugihara et al. (2012) <doi:10.1126/science.1227079>, partial cross mapping as outlined in Leng et al. (2020) <doi:10.1038/s41467-020-16238-0>, and cross mapping cardinality as described in Tao et al. (2023) <doi:10.1016/j.fmre.2023.01.007>.
Author: Wenbo Lv [aut, cre, cph]
Maintainer: Wenbo Lv <lyu.geosocial@gmail.com>
Diff between tEDM versions 1.1 dated 2025-08-25 and 1.2 dated 2026-01-14
tEDM-1.1/tEDM/man/figures/edm/cvds_hk.rds |only tEDM-1.1/tEDM/src/HelperFuns.cpp |only tEDM-1.1/tEDM/src/IntersectionCardinality.cpp |only tEDM-1.1/tEDM/src/IntersectionCardinality.h |only tEDM-1.1/tEDM/src/tEDMDataStruct.h |only tEDM-1.2/tEDM/DESCRIPTION | 8 tEDM-1.2/tEDM/MD5 | 129 ++-- tEDM-1.2/tEDM/NEWS.md | 60 +- tEDM-1.2/tEDM/R/RcppExports.R | 66 +- tEDM-1.2/tEDM/R/ccm.R | 4 tEDM-1.2/tEDM/R/cmc.R | 4 tEDM-1.2/tEDM/R/formatoutput.R | 340 ++++++------- tEDM-1.2/tEDM/R/ic.R | 73 +- tEDM-1.2/tEDM/R/internal_utility.R | 260 ++++----- tEDM-1.2/tEDM/R/multispatialccm.R | 124 ++-- tEDM-1.2/tEDM/R/pcm.R | 4 tEDM-1.2/tEDM/R/simplex.R | 11 tEDM-1.2/tEDM/R/smap.R | 2 tEDM-1.2/tEDM/build/vignette.rds |binary tEDM-1.2/tEDM/inst/CITATION |only tEDM-1.2/tEDM/inst/doc/tEDM.Rmd | 410 +++++++-------- tEDM-1.2/tEDM/inst/doc/tEDM.html | 522 +++++++++----------- tEDM-1.2/tEDM/inst/include |only tEDM-1.2/tEDM/man/ccm.Rd | 4 tEDM-1.2/tEDM/man/cmc.Rd | 2 tEDM-1.2/tEDM/man/figures/edm/cvds_hk.png |binary tEDM-1.2/tEDM/man/figures/edm/fig_case2-1.png |binary tEDM-1.2/tEDM/man/figures/edm/fig_case3-1.png |binary tEDM-1.2/tEDM/man/figures/edm/fig_pcm-1.png |binary tEDM-1.2/tEDM/man/figures/edm/fig_simplex_cvd-1.png |binary tEDM-1.2/tEDM/man/ic.Rd | 5 tEDM-1.2/tEDM/man/multispatialccm.Rd | 13 tEDM-1.2/tEDM/man/pcm.Rd | 4 tEDM-1.2/tEDM/man/simplex.Rd | 5 tEDM-1.2/tEDM/man/smap.Rd | 4 tEDM-1.2/tEDM/src/CCM.cpp | 86 +-- tEDM-1.2/tEDM/src/CCM.h | 15 tEDM-1.2/tEDM/src/CMC.cpp | 15 tEDM-1.2/tEDM/src/CMC.h | 11 tEDM-1.2/tEDM/src/CppCombn.h |only tEDM-1.2/tEDM/src/CppDistances.cpp | 186 ++++--- tEDM-1.2/tEDM/src/CppDistances.h | 18 tEDM-1.2/tEDM/src/CppStats.cpp | 210 ++++++-- tEDM-1.2/tEDM/src/CppStats.h | 12 tEDM-1.2/tEDM/src/DataStruct.h |only tEDM-1.2/tEDM/src/DeLongPlacements.cpp | 5 tEDM-1.2/tEDM/src/DeLongPlacements.h | 2 tEDM-1.2/tEDM/src/EDMExp.cpp | 107 ++-- tEDM-1.2/tEDM/src/FNN.cpp | 54 -- tEDM-1.2/tEDM/src/FNN.h | 17 tEDM-1.2/tEDM/src/Forecast4TS.cpp | 171 ++++-- tEDM-1.2/tEDM/src/Forecast4TS.h | 41 - tEDM-1.2/tEDM/src/IntersectionalCardinality.cpp |only tEDM-1.2/tEDM/src/IntersectionalCardinality.h |only tEDM-1.2/tEDM/src/MVE.cpp | 4 tEDM-1.2/tEDM/src/MVE.h | 9 tEDM-1.2/tEDM/src/Makevars | 4 tEDM-1.2/tEDM/src/Makevars.win | 4 tEDM-1.2/tEDM/src/MultispatialCCM.cpp | 194 ++++--- tEDM-1.2/tEDM/src/MultispatialCCM.h | 45 + tEDM-1.2/tEDM/src/NumericUtils.h |only tEDM-1.2/tEDM/src/PCM.cpp | 157 +++--- tEDM-1.2/tEDM/src/PCM.h | 15 tEDM-1.2/tEDM/src/RcppExports.cpp | 178 ++++-- tEDM-1.2/tEDM/src/SMap.cpp | 23 tEDM-1.2/tEDM/src/SMap.h | 4 tEDM-1.2/tEDM/src/SimplexProjection.cpp | 35 - tEDM-1.2/tEDM/src/SimplexProjection.h | 10 tEDM-1.2/tEDM/src/StatsExp.cpp | 59 +- tEDM-1.2/tEDM/src/UtilityExp.cpp |only tEDM-1.2/tEDM/vignettes/tEDM.Rmd | 410 +++++++-------- tEDM-1.2/tEDM/vignettes/tEDM.Rmd.orig | 259 ++++----- 72 files changed, 2362 insertions(+), 2052 deletions(-)
Title: Classification with Parallel Factor Analysis
Description: Classification using Richard A. Harshman's Parallel Factor Analysis-1 (Parafac) model or Parallel Factor Analysis-2 (Parafac2) model fit to a three-way or four-way data array. See Harshman and Lundy (1994): <doi:10.1016/0167-9473(94)90132-5>. Uses component weights from one mode of a Parafac or Parafac2 model as features to tune parameters for one or more classification methods via a k-fold cross-validation procedure. Allows for constraints on different tensor modes. Supports penalized logistic regression, support vector machine, random forest, feed-forward neural network, regularized discriminant analysis, and gradient boosting machine. Supports binary and multiclass classification. Predicts class labels or class probabilities and calculates multiple classification performance measures. Implements parallel computing via the 'parallel', 'doParallel', and 'doRNG' packages.
Author: Matthew A. Asisgress [aut, cre]
Maintainer: Matthew A. Asisgress <mattgress@protonmail.ch>
Diff between cpfa versions 1.2-4 dated 2025-12-14 and 1.2-5 dated 2026-01-14
ChangeLog | 18 +++++++++++++++++- DESCRIPTION | 8 ++++---- MD5 | 44 ++++++++++++++++++++++---------------------- NAMESPACE | 24 +++++++++--------------- R/cpfa.R | 11 +++++++---- R/kcv.gbm.R | 11 ++--------- R/kcv.nn.R | 7 ++++++- R/kcv.plr.R | 9 +++++---- R/kcv.rda.R | 5 ++++- R/kcv.rf.R | 2 +- R/predict.tunecpfa.R | 7 ++----- R/tunecpfa.R | 36 +++++++++++++++++++++--------------- inst/doc/cpfa.Rmd | 46 ++++++++++++++++++++++++++-------------------- inst/doc/cpfa.pdf |binary man/cpfa.Rd | 25 +++++++++++++++++++++---- man/cpm.Rd | 6 ++++++ man/cpm.all.Rd | 6 ++++++ man/plotcpfa.Rd | 6 ++++++ man/predict.tunecpfa.Rd | 10 ++++++++++ man/print.tunecpfa.Rd | 6 ++++++ man/simcpfa.Rd | 2 +- man/tunecpfa.Rd | 28 +++++++++++++++++++++++++--- vignettes/cpfa.Rmd | 46 ++++++++++++++++++++++++++-------------------- 23 files changed, 233 insertions(+), 130 deletions(-)
Title: Convert Digital Images into 'SpatRaster' Objects
Description: Generate 'SpatRaster' objects, as defined by the 'terra'
package, from digital images, using a specified spatial object as a
geographical reference.
Author: Diego Hernangomez [aut, cre, cph]
Maintainer: Diego Hernangomez <diego.hernangomezherrero@gmail.com>
Diff between rasterpic versions 0.3.0 dated 2025-03-19 and 0.3.1 dated 2026-01-14
DESCRIPTION | 16 - MD5 | 64 ++-- NEWS.md | 57 ++-- R/asp_ratio.R | 73 ++--- R/rasterpic_img.R | 75 +++-- R/utils.R | 31 +- README.md | 67 +---- build/vignette.rds |binary inst/WORDLIST | 4 inst/doc/rasterpic.R | 2 inst/doc/rasterpic.Rmd | 20 - inst/doc/rasterpic.html | 40 +-- inst/schemaorg.json | 4 man/asp_ratio.Rd | 5 man/figures/README-align-crop-mask-1.png |binary man/figures/README-example-basic-1.png |binary man/figures/logo.png |binary man/rasterpic_img.Rd | 36 +- tests/testthat/_snaps |only tests/testthat/test-alignment.R | 16 - tests/testthat/test-asp_ratio.R | 3 tests/testthat/test-bbox.R | 12 tests/testthat/test-crop_mask.R | 43 +-- tests/testthat/test-errors_messages.R | 9 tests/testthat/test-expand.R | 3 tests/testthat/test-fileformat.R | 403 +++++++++++++++---------------- tests/testthat/test-nlayers.R | 218 ++++++++-------- tests/testthat/test-online.R | 52 ++-- tests/testthat/test-sfg.R | 11 tests/testthat/test-spatextent.R | 10 tests/testthat/test-vector.R | 12 vignettes/rasterpic.Rmd | 20 - 32 files changed, 664 insertions(+), 642 deletions(-)
Title: Fast Staggered Difference-in-Difference Estimators
Description: A fast and flexible implementation of Callaway and Sant'Anna's (2021)<doi:10.1016/j.jeconom.2020.12.001> staggered Difference-in-Differences (DiD) estimators, 'fastdid' reduces the computation time from hours to seconds, and incorporates extensions such as time-varying covariates and multiple events.
Author: Lin-Tung Tsai [aut, cre, cph],
Maxwell Kellogg [ctb],
Kuan-Ju Tseng [ctb]
Maintainer: Lin-Tung Tsai <tsaidondon@gmail.com>
Diff between fastdid versions 1.0.5 dated 2025-06-23 and 1.0.6 dated 2026-01-14
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 3 +-- NEWS.md | 4 ++++ R/estimate_did.R | 9 +++------ R/fastdid.R | 3 +-- 6 files changed, 19 insertions(+), 20 deletions(-)
Title: 3D Volcano Plots and Polar Plots for Three-Class Data
Description: Generates interactive plots for analysing and visualising
three-class high dimensional data. It is particularly suited to visualising
differences in continuous attributes such as gene/protein/biomarker
expression levels between three groups. Differential gene/biomarker
expression analysis between two classes is typically shown as a volcano
plot. However, with three groups this type of visualisation is particularly
difficult to interpret. This package generates 3D volcano plots and 3-way
polar plots for easier interpretation of three-class data.
Author: Katriona Goldmann [aut, cre] ,
Myles Lewis [aut]
Maintainer: Katriona Goldmann <katrionagoldmann@gmail.com>
This is a re-admission after prior archival of version 2.0.9 dated 2023-05-17
Diff between volcano3D versions 2.0.9 dated 2023-05-17 and 2.0.11 dated 2026-01-14
DESCRIPTION | 15 - MD5 | 38 ++-- NAMESPACE | 2 NEWS.md | 11 + R/deseq_2x3.R | 45 ++-- R/deseq_polar.R | 2 R/polar_coords.R | 11 - R/radial_plotly.R | 3 R/volcano3D.R | 11 + build/vignette.rds |binary inst/doc/Vignette.R | 101 +++++----- inst/doc/Vignette.html | 416 ++++++--------------------------------------- inst/doc/Vignette.rmd | 13 - inst/doc/Vignette_2x3.R | 100 +++++----- inst/doc/Vignette_2x3.Rmd | 7 inst/doc/Vignette_2x3.html | 37 +--- man/deseq_2x3.Rd | 46 ++-- man/deseq_polar.Rd | 3 vignettes/Vignette.rmd | 13 - vignettes/Vignette_2x3.Rmd | 7 20 files changed, 292 insertions(+), 589 deletions(-)
Title: Pattern-Based Zoneless Method for Analysis and Visualization of
Racial Topography
Description: Implements a computational framework for a pattern-based,
zoneless analysis, and visualization of (ethno)racial topography
(Dmowska, Stepinski, and Nowosad (2020) <doi:10.1016/j.apgeog.2020.102239>).
It is a reimagined
approach for analyzing residential segregation and racial diversity based on
the concept of 'landscape’ used in the domain of landscape ecology.
Author: Jakub Nowosad [aut, cre] ,
Anna Dmowska [aut],
Tomasz Stepinski [aut]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between raceland versions 1.2.1 dated 2023-04-14 and 1.2.2 dated 2026-01-14
raceland-1.2.1/raceland/src/Makevars |only raceland-1.2.1/raceland/src/Makevars.win |only raceland-1.2.2/raceland/DESCRIPTION | 11 raceland-1.2.2/raceland/MD5 | 20 raceland-1.2.2/raceland/build/partial.rdb |binary raceland-1.2.2/raceland/build/vignette.rds |binary raceland-1.2.2/raceland/inst/doc/raceland-intro1.R | 44 raceland-1.2.2/raceland/inst/doc/raceland-intro1.html | 762 +++++++++---- raceland-1.2.2/raceland/inst/doc/raceland-intro2.R | 48 raceland-1.2.2/raceland/inst/doc/raceland-intro2.html | 796 +++++++++----- raceland-1.2.2/raceland/inst/doc/raceland-intro3.R | 604 +++++----- raceland-1.2.2/raceland/inst/doc/raceland-intro3.html | 1005 +++++++++++------- 12 files changed, 2078 insertions(+), 1212 deletions(-)
Title: Robust and Flexible Model-Based Clustering for Data Sets with
Missing Values at Random
Description: Implementations of various robust and flexible model-based clustering methods for data sets with missing values at random (Tong and Tortora, 2025, <doi:10.18637/jss.v115.i03>).
Two main models are: Multivariate Contaminated Normal Mixture (MCNM, Tong and Tortora, 2022, <doi:10.1007/s11634-021-00476-1>) and
Multivariate Generalized Hyperbolic Mixture (MGHM, Wei et al., 2019, <doi:10.1016/j.csda.2018.08.016>). Mixtures via some special or limiting
cases of the multivariate generalized hyperbolic distribution are also included: Normal-Inverse Gaussian, Symmetric Normal-Inverse Gaussian,
Skew-Cauchy, Cauchy, Skew-t, Student's t, Normal, Symmetric Generalized Hyperbolic, Hyperbolic Univariate Marginals,
Hyperbolic, and Symmetric Hyperbolic. Funding: This work was partially supported by the National Science foundation NSF Grant NO. 2209974.
Author: Hung Tong [aut, cre],
Cristina Tortora [aut, ths, dgs]
Maintainer: Hung Tong <hungtongmx@gmail.com>
Diff between MixtureMissing versions 3.0.5 dated 2025-10-23 and 3.0.6 dated 2026-01-14
DESCRIPTION | 8 - MD5 | 9 - inst |only man/MCNM.Rd | 276 ++++++++++++++++++++--------------------- man/MGHM.Rd | 336 +++++++++++++++++++++++++------------------------- man/select_mixture.Rd | 286 +++++++++++++++++++++--------------------- 6 files changed, 458 insertions(+), 457 deletions(-)
More information about MixtureMissing at CRAN
Permanent link
Title: Joint Clustering and Alignment of Functional Data
Description: Implementations of the k-means, hierarchical agglomerative and
DBSCAN clustering methods for functional data which allows for jointly
aligning and clustering curves. It supports functional data defined on
one-dimensional domains but possibly evaluating in multivariate codomains.
It supports functional data defined in arrays but also via the 'fd' and
'funData' classes for functional data defined in the 'fda' and 'funData'
packages respectively. It currently supports shift, dilation and affine
warping functions for functional data defined on the real line and uses the
SRVF framework to handle boundary-preserving warping for functional data
defined on a specific interval. Main reference for the k-means algorithm:
Sangalli L.M., Secchi P., Vantini S., Vitelli V. (2010) "k-mean alignment
for curve clustering" <doi:10.1016/j.csda.2009.12.008>. Main reference for
the SRVF framework: Tucker, J. D., Wu, W., & Srivastava, A. (2013)
"Generative models for functional data using phase and [...truncated...]
Author: Aymeric Stamm [aut, cre] ,
Laura Sangalli [ctb],
Piercesare Secchi [ctb],
Simone Vantini [ctb],
Valeria Vitelli [ctb],
Alessandro Zito [ctb]
Maintainer: Aymeric Stamm <aymeric.stamm@cnrs.fr>
This is a re-admission after prior archival of version 0.4.1 dated 2025-01-14
Diff between fdacluster versions 0.4.1 dated 2025-01-14 and 0.4.2 dated 2026-01-14
fdacluster-0.4.1/fdacluster/src/kumaraswamyWarpingClass.cpp |only fdacluster-0.4.1/fdacluster/src/kumaraswamyWarpingClass.h |only fdacluster-0.4.2/fdacluster/DESCRIPTION | 13 fdacluster-0.4.2/fdacluster/MD5 | 66 - fdacluster-0.4.2/fdacluster/NEWS.md | 13 fdacluster-0.4.2/fdacluster/R/fdadbscan.R | 70 - fdacluster-0.4.2/fdacluster/R/fdadist.R | 142 +- fdacluster-0.4.2/fdacluster/R/fdahclust.R | 67 - fdacluster-0.4.2/fdacluster/R/fdakmeans.R | 227 ++-- fdacluster-0.4.2/fdacluster/R/utils.R | 266 +++-- fdacluster-0.4.2/fdacluster/build/partial.rdb |binary fdacluster-0.4.2/fdacluster/build/vignette.rds |binary fdacluster-0.4.2/fdacluster/inst/doc/berkeley-growth.R | 109 +- fdacluster-0.4.2/fdacluster/inst/doc/berkeley-growth.Rmd | 124 +- fdacluster-0.4.2/fdacluster/inst/doc/berkeley-growth.html | 248 ++--- fdacluster-0.4.2/fdacluster/inst/doc/kmeans-initialisation.R | 82 - fdacluster-0.4.2/fdacluster/inst/doc/kmeans-initialisation.Rmd | 82 - fdacluster-0.4.2/fdacluster/inst/doc/kmeans-initialisation.html | 117 +- fdacluster-0.4.2/fdacluster/man/autoplot.caps.Rd | 2 fdacluster-0.4.2/fdacluster/man/autoplot.mcaps.Rd | 2 fdacluster-0.4.2/fdacluster/man/fdadbscan.Rd | 3 fdacluster-0.4.2/fdacluster/man/fdadist.Rd | 2 fdacluster-0.4.2/fdacluster/man/fdahclust.Rd | 2 fdacluster-0.4.2/fdacluster/man/fdakmeans.Rd | 2 fdacluster-0.4.2/fdacluster/src/baseDissimilarityClass.cpp | 5 fdacluster-0.4.2/fdacluster/src/lowessCenterClass.cpp | 3 fdacluster-0.4.2/fdacluster/src/polyCenterClass.cpp | 3 fdacluster-0.4.2/fdacluster/tests/testthat/test-caps-diagnostic.R | 2 fdacluster-0.4.2/fdacluster/tests/testthat/test-fdadbscan.R | 23 fdacluster-0.4.2/fdacluster/tests/testthat/test-fdadist.R | 2 fdacluster-0.4.2/fdacluster/tests/testthat/test-fdahclust.R | 23 fdacluster-0.4.2/fdacluster/tests/testthat/test-fdakmeans.R | 485 +++++++--- fdacluster-0.4.2/fdacluster/vignettes/berkeley-growth-data.RData |only fdacluster-0.4.2/fdacluster/vignettes/berkeley-growth.Rmd | 124 +- fdacluster-0.4.2/fdacluster/vignettes/kmeans-initialisation-data.RData |only fdacluster-0.4.2/fdacluster/vignettes/kmeans-initialisation.Rmd | 82 - 36 files changed, 1489 insertions(+), 902 deletions(-)
Title: Stepwise Covariate Selection for the Fine & Gray Competing Risks
Regression Model
Description: Performs forward and backward stepwise regression for the
proportional subdistribution hazards model in competing risks
(Fine & Gray 1999). Procedure uses AIC, BIC and BICcr as selection
criteria. BICcr has a penalty of k = log(n*), where n* is the number
of primary events. This version includes improved handling of factors,
interactions, and polynomial terms.
Author: Ravi Varadhan [aut, cre],
Deborah Kuk [aut],
Leon Wang [ctb]
Maintainer: Ravi Varadhan <ravi.varadhan@jhu.edu>
Diff between crrstep versions 2024.1.1 dated 2024-10-28 and 2025.1.1 dated 2026-01-14
DESCRIPTION | 27 - MD5 | 16 NAMESPACE | 40 + R/crrstep.r | 1413 +++++++++++++++++++++++++++++++++++++-------------------- build |only inst/CITATION |only inst/NEWS.Rd | 41 + inst/doc |only man/crrstep.Rd | 278 ++++++++--- vignettes |only 10 files changed, 1236 insertions(+), 579 deletions(-)
Title: Data Access and Analytical Tools for 'VectorSurv' Users
Description: Allows registered 'VectorSurv' <https://vectorsurv.org/> users access to data through the 'VectorSurv API' <https://api.vectorsurv.org/>. Additionally provides functions for analysis and visualization.
Author: Christina De Cesaris [aut, cre]
Maintainer: Christina De Cesaris <cmdecesaris@ucdavis.edu>
Diff between vectorsurvR versions 1.6.1 dated 2025-12-03 and 1.6.2 dated 2026-01-14
DESCRIPTION | 6 - MD5 | 12 +- R/getPools.R | 2 R/getSpeciesTable.R | 160 ++++++++++++++++++++++------------ inst/doc/vectorsurvR.html | 4 man/getSpeciesTable.Rd | 7 - tests/testthat/test-getSpeciesTable.R | 4 7 files changed, 123 insertions(+), 72 deletions(-)
Title: Implementation of the SVM-Maj Algorithm
Description: Implements the SVM-Maj algorithm to train data with support vector machine
<doi:10.1007/s11634-008-0020-9>.
This algorithm uses two efficient updates, one for linear kernel and one
for the nonlinear kernel.
Author: Hoksan Yip [aut, cre],
Patrick J.F. Groenen [aut],
Georgi Nalbantov [aut]
Maintainer: Hoksan Yip <hoksan@gmail.com>
Diff between SVMMaj versions 0.2.9.3 dated 2024-11-22 and 0.2.9.4 dated 2026-01-14
DESCRIPTION | 10 +++++----- MD5 | 20 ++++++++++---------- R/plotsvmmaj.R | 18 +++++++++--------- R/printsvmmaj.R | 2 +- R/roccurve.R | 4 ++-- R/svmmajcrossval.R | 18 ++++++++---------- build/vignette.rds |binary inst/doc/paper.Rnw | 4 ++-- inst/doc/paper.pdf |binary vignettes/References.bib | 2 +- vignettes/paper.Rnw | 4 ++-- 11 files changed, 40 insertions(+), 42 deletions(-)
Title: Fitting Semi-Parametric Generalized log-Gamma Regression Models
Description: Set of tools to fit a linear multiple or semi-parametric regression
models with the possibility of non-informative random right or left censoring.
Under this setup, the localization parameter of the response variable distribution is modeled by using linear multiple regression
or semi-parametric functions, whose non-parametric components may be approximated
by natural cubic spline or P-splines. The supported distribution for the model error is a generalized log-gamma distribution which includes
the generalized extreme value and standard normal distributions as important special cases. Inference is based on likelihood, penalized likelihood and bootstrap methods.
Lastly, some numerical and graphical devices for diagnostic of the fitted models are offered.
Author: Carlos Alberto Cardozo Delgado [aut, cre, cph] ,
Gilberto Paula [aut],
Luis Vanegas [aut]
Maintainer: Carlos Alberto Cardozo Delgado <cardozorpackages@gmail.com>
Diff between sglg versions 0.2.5 dated 2025-12-18 and 0.2.6 dated 2026-01-14
DESCRIPTION | 6 +-- MD5 | 6 +-- R/plot.npc.R | 86 +++++++++++++++++++++++++++++++++++++-------------------- man/plotnpc.Rd | 13 +++++--- 4 files changed, 71 insertions(+), 40 deletions(-)
Title: Pharmacokinetic Bioanalysis Experiments Design and Exploration
Description: Automate pharmacokinetic/pharmacodynamic bioanalytical procedures based on best practices and regulatory recommendations.
The package impose regulatory constrains and sanity checking for common bioanalytical procedures.
Additionally, 'PKbioanalysis' provides a relational infrastructure for plate management and injection sequence.
Author: Omar Elashkar [aut, cre]
Maintainer: Omar Elashkar <omar.i.elashkar@gmail.com>
Diff between PKbioanalysis versions 0.3.0 dated 2025-05-21 and 0.4.0 dated 2026-01-14
PKbioanalysis-0.3.0/PKbioanalysis/R/plate_app.R |only PKbioanalysis-0.3.0/PKbioanalysis/man/add_samples_c.Rd |only PKbioanalysis-0.3.0/PKbioanalysis/man/build_injec_seq-MultiPlate-method.Rd |only PKbioanalysis-0.3.0/PKbioanalysis/man/build_injec_seq-PlateObj-method.Rd |only PKbioanalysis-0.3.0/PKbioanalysis/man/plate_app.Rd |only PKbioanalysis-0.3.0/PKbioanalysis/man/plot_design.Rd |only PKbioanalysis-0.4.0/PKbioanalysis/DESCRIPTION | 36 PKbioanalysis-0.4.0/PKbioanalysis/MD5 | 266 + PKbioanalysis-0.4.0/PKbioanalysis/NAMESPACE | 459 ++ PKbioanalysis-0.4.0/PKbioanalysis/NEWS.md | 18 PKbioanalysis-0.4.0/PKbioanalysis/R/PKbioanalysis-package.R | 290 + PKbioanalysis-0.4.0/PKbioanalysis/R/calc.R |only PKbioanalysis-0.4.0/PKbioanalysis/R/chrom_anomaly_plots.R |only PKbioanalysis-0.4.0/PKbioanalysis/R/chrom_app.R |only PKbioanalysis-0.4.0/PKbioanalysis/R/chrom_parsers.R |only PKbioanalysis-0.4.0/PKbioanalysis/R/chrom_utils.R |only PKbioanalysis-0.4.0/PKbioanalysis/R/chromatogram.R |only 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Title: Data Structures for Brain Imaging Data
Description: A collection of data structures and methods for handling volumetric
brain imaging data, with a focus on functional magnetic resonance imaging (fMRI). Provides efficient
representations for three-dimensional and four-dimensional neuroimaging data through sparse and dense array
implementations, memory-mapped file access for large datasets, and
spatial transformation capabilities. Implements methods for image resampling,
spatial filtering, region of interest analysis, and connected component labeling. General introduction
to fMRI analysis can be found in Poldrack et al. (2024, "Handbook of functional MRI data analysis",
<ISBN:9781108795760>).
Author: Bradley R Buchsbaum [aut, cre, cph]
Maintainer: Bradley R Buchsbaum <brad.buchsbaum@gmail.com>
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neuroim2-0.8.5/neuroim2/src/Makevars.win |only neuroim2-0.8.5/neuroim2/src/RcppExports.cpp | 94 + neuroim2-0.8.5/neuroim2/src/bilateral_filter_3d.cpp | 8 neuroim2-0.8.5/neuroim2/src/bilateral_filter_4d.cpp | 53 neuroim2-0.8.5/neuroim2/src/cgb.cpp |only neuroim2-0.8.5/neuroim2/src/conncomp.cpp | 7 neuroim2-0.8.5/neuroim2/src/downsample_3d.cpp |only neuroim2-0.8.5/neuroim2/src/downsample_4d.cpp |only neuroim2-0.8.5/neuroim2/src/fast_laplacian_enhance.cpp | 7 neuroim2-0.8.5/neuroim2/src/indexFuns.cpp | 8 neuroim2-0.8.5/neuroim2/src/kernel_filter.cpp | 7 neuroim2-0.8.5/neuroim2/src/radius_search_3d.cpp | 7 neuroim2-0.8.5/neuroim2/tests/testthat/test-array-like.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-bilateral-4d.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-cgb.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-clustered-neurovec.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-clusteredneurovol.R | 84 + neuroim2-0.8.5/neuroim2/tests/testthat/test-downsample.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-filebacked.R | 2 neuroim2-0.8.5/neuroim2/tests/testthat/test-imageproc.R | 2 neuroim2-0.8.5/neuroim2/tests/testthat/test-io-scaling-and-truncation.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-mask.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-neurohypervec.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-neurovec-regressions.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-neurovec.R | 1 neuroim2-0.8.5/neuroim2/tests/testthat/test-neurovol-regressions.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-nifti-extensions.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-nifti-utils.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-orientation.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-read-image.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-resample-to.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-resample.R | 41 neuroim2-0.8.5/neuroim2/tests/testthat/test-roivol.R | 34 neuroim2-0.8.5/neuroim2/tests/testthat/test-searchlight-correctness.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-searchlight.R | 9 neuroim2-0.8.5/neuroim2/tests/testthat/test-simulate.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-sparse-neurovec-as-matrix.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-sparse-neurovec-regressions.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-sparse-neurovec-subset.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-sparse-neurovec-validity.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-spatfilter.R | 13 neuroim2-0.8.5/neuroim2/tests/testthat/test-vignette-neuro-vectors.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-vignette-pipelines.R |only neuroim2-0.8.5/neuroim2/tests/testthat/test-vignette-roi.R |only neuroim2-0.8.5/neuroim2/vignettes/Cookbook.Rmd |only neuroim2-0.8.5/neuroim2/vignettes/ImageVolumes.Rmd | 115 + neuroim2-0.8.5/neuroim2/vignettes/NeuroVector.Rmd | 163 +- neuroim2-0.8.5/neuroim2/vignettes/Overview.Rmd |only neuroim2-0.8.5/neuroim2/vignettes/Overview.md |only neuroim2-0.8.5/neuroim2/vignettes/Resampling.Rmd |only neuroim2-0.8.5/neuroim2/vignettes/Smoothing.Rmd |only neuroim2-0.8.5/neuroim2/vignettes/albers.css |only neuroim2-0.8.5/neuroim2/vignettes/albers.js |only neuroim2-0.8.5/neuroim2/vignettes/clustered-neurovec.Rmd |only neuroim2-0.8.5/neuroim2/vignettes/elegant-slice-visualization.Rmd |only neuroim2-0.8.5/neuroim2/vignettes/pipelines.Rmd | 26 neuroim2-0.8.5/neuroim2/vignettes/regionOfInterest.Rmd | 562 ++++++- 208 files changed, 6272 insertions(+), 1501 deletions(-)
Title: Visualization Package for CanvasXpress in R
Description: Enables creation of visualizations using the CanvasXpress framework
in R. CanvasXpress is a standalone JavaScript library for reproducible research
with complete tracking of data and end-user modifications stored in a single
PNG image that can be played back. See <https://www.canvasxpress.org> for more
information.
Author: Isaac Neuhaus [aut],
Connie Brett [aut, cre]
Maintainer: Connie Brett <connie@aggregate-genius.com>
Diff between canvasXpress versions 1.58.7 dated 2025-11-08 and 1.59.5 dated 2026-01-14
DESCRIPTION | 11 MD5 | 30 NEWS.md | 3 R/canvasXpress.R | 7 R/ggplot_as_list.R | 241 R/internal_functionality.R | 24 build/vignette.rds |binary inst/doc/additional_examples.html | 9 inst/doc/getting_started.html | 9 inst/htmlwidgets/canvasXpress.js | 5 inst/htmlwidgets/canvasXpress.yaml | 2 inst/htmlwidgets/lib/canvasXpress/canvasXpress.css | 4948 +++--------------- inst/htmlwidgets/lib/canvasXpress/canvasXpress.min.js | 6 tests/testthat/setup.R | 5 tests/testthat/test-other-ggplot_as_list.R | 535 + tests/testthat/test-other-logical-groups.R | 8 16 files changed, 1672 insertions(+), 4171 deletions(-)
Title: Interface with the Brickset API for Getting Data About LEGO Sets
Description: Interface with the 'Brickset' API
<https://brickset.com/article/52664/api-version-3-documentation> for
getting data about LEGO sets. Data sets that can be used for teaching
and learning without the need of a 'Brickset' account and API key are
also included. Includes all LEGO since through the end of 2025.
Author: Jason Bryer [aut, cre]
Maintainer: Jason Bryer <jason@bryer.org>
Diff between brickset versions 2025.0.0 dated 2025-02-25 and 2026.0.0 dated 2026-01-14
DESCRIPTION | 14 +- MD5 | 24 ++-- NEWS.md | 4 README.md | 70 +++++++------- build/vignette.rds |binary data/legosets.rda |binary inst/doc/lego_more_expensive.html | 149 +++++++++++++++--------------- inst/doc/predicting_set_price.R |only inst/doc/predicting_set_price.Rmd |only inst/doc/predicting_set_price.html |only man/figures/README-legosets_by_year-1.png |binary man/figures/README-pieces_by_price-1.png |binary man/getSets.Rd | 58 +++++------ man/legosets.Rd | 58 +++++------ vignettes/predicting_set_price.Rmd |only 15 files changed, 197 insertions(+), 180 deletions(-)
Title: Tools to Create Formal Language Parser
Description: R implementation of the common parsing tools 'lex' and 'yacc'.
Author: Marek Jagielski [aut, cre, cph],
David M. Beazley [aut, cph],
Yasutaka Tanaka [ctb],
Henrico Witvliet [ctb]
Maintainer: Marek Jagielski <marek.jagielski@gmail.com>
Diff between rly versions 1.7.7 dated 2025-09-26 and 1.7.8 dated 2026-01-14
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NAMESPACE | 7 ------- R/logger.R | 26 ++++++++++++++------------ build/vignette.rds |binary 5 files changed, 23 insertions(+), 28 deletions(-)
Title: Generalized Latent Markov Models
Description: Latent Markov models for longitudinal continuous and categorical data. See Bartolucci, Pandolfi, Pennoni (2017)<doi:10.18637/jss.v081.i04>.
Author: Francesco Bartolucci [aut, cre],
Silvia Pandolfi [aut],
Fulvia Pennoni [aut],
Alessio Farcomeni [ctb],
Alessio Serafini [ctb]
Maintainer: Francesco Bartolucci <francesco.bartolucci@unipg.it>
Diff between LMest versions 3.2.7 dated 2025-08-23 and 3.2.8 dated 2026-01-14
DESCRIPTION | 8 ++--- MD5 | 42 +++++++++++++------------- R/draw.R | 10 +++--- R/plot.LMbasic.R | 4 +- R/plot.LMbasiccont.R | 4 +- R/plot.LMlatent.R | 4 +- R/plot.LMlatentcont.R | 4 +- build/vignette.rds |binary inst/CITATION | 66 +++++++++++++++++++++++++++++------------- inst/doc/vignetteLMest.html | 11 +++---- man/LMest-package.Rd | 7 +++- man/RLMSlong.Rd | 3 + man/data_employment_sim.Rd | 4 +- man/data_heart_sim.Rd | 5 +-- man/data_market_sim.Rd | 3 + man/est_lm_basic_cont.Rd | 8 +++-- man/est_lm_cov_latent_cont.Rd | 7 +++- man/est_lm_cov_manifest.Rd | 7 +++- man/lmest.Rd | 6 +++ man/lmestCont.Rd | 6 +++ man/lmestMc.Rd | 4 ++ man/lmestSearch.Rd | 4 ++ 22 files changed, 142 insertions(+), 75 deletions(-)
Title: Social Relation Model (SRM) Analyses for Single or Multiple
Groups
Description: Social Relation Model (SRM) analyses for single or multiple
round-robin groups are performed. These analyses are either based on one
manifest variable, one latent construct measured by two manifest variables,
two manifest variables and their bivariate relations, or two latent
constructs each measured by two manifest variables. Within-group t-tests
for variance components and covariances are provided for single groups.
For multiple groups two types of significance tests are provided:
between-groups t-tests (as in SOREMO) and enhanced standard errors based on
Lashley and Bond (1997) <DOI:10.1037/1082-989X.2.3.278>. Handling for missing values is provided.
Author: Felix D. Schoenbrodt [cre, aut],
Mitja D. Back [aut],
Stefan C. Schmukle [aut]
Maintainer: Felix D. Schoenbrodt <felix.schoenbrodt@psy.lmu.de>
Diff between TripleR versions 1.5.4 dated 2022-04-26 and 1.5.5 dated 2026-01-14
TripleR-1.5.4/TripleR/inst/doc/TripleR-knitr.pdf |only TripleR-1.5.4/TripleR/inst/doc/TripleR-knitr.pdf.asis |only TripleR-1.5.4/TripleR/vignettes/TripleR-knitr.pdf.asis |only TripleR-1.5.5/TripleR/DESCRIPTION | 26 ++++++++++++----- TripleR-1.5.5/TripleR/MD5 | 14 ++++----- TripleR-1.5.5/TripleR/NEWS | 6 +++ TripleR-1.5.5/TripleR/build/vignette.rds |binary TripleR-1.5.5/TripleR/inst/CITATION | 16 ++-------- TripleR-1.5.5/TripleR/inst/doc/TripleR.pdf |only TripleR-1.5.5/TripleR/inst/doc/TripleR.pdf.asis |only TripleR-1.5.5/TripleR/vignettes/TripleR.pdf.asis |only 11 files changed, 36 insertions(+), 26 deletions(-)
Title: Minimal and Uncluttered Package Documentation
Description: Generates simple and beautiful one-page HTML reference manuals
with package documentation. Math rendering and syntax highlighting are done
server-side in R such that no JavaScript libraries are needed in the
browser, which makes the documentation portable and fast to load.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between postdoc versions 1.4.1 dated 2025-04-13 and 1.4.2 dated 2026-01-14
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS | 3 +++ R/manual.R | 10 ++-------- 4 files changed, 12 insertions(+), 15 deletions(-)
Title: Bayesian Methods for Change Point Analysis
Description: Performs change point detection on univariate and multivariate time series (Martínez & Mena, 2014, <doi:10.1214/14-BA878> ; Corradin, Danese & Ongaro, 2022, <doi:10.1016/j.ijar.2021.12.019>) and clusters time-dependent data with common change points (Corradin, Danese, KhudaBukhsh & Ongaro, 2026, <doi:10.1007/s11222-025-10756-x>).
Author: Luca Danese [aut, cre, cph] ,
Riccardo Corradin [aut],
Andrea Ongaro [aut]
Maintainer: Luca Danese <l.danese1@campus.unimib.it>
Diff between BayesChange versions 2.1.3 dated 2025-11-11 and 2.2.0 dated 2026-01-14
DESCRIPTION | 16 MD5 | 96 +- NAMESPACE | 9 NEWS.md | 15 R/ClustCpObj.R | 338 +++++--- R/DetectCpObj.R | 199 ++-- R/RcppExports.R | 473 ++++------- R/clust_cp.R | 145 +-- R/detect_cp.R | 132 +-- R/epi_synthetic.R |only R/epi_synthetic_multi.R |only R/eu_inflation.R |only R/stock_multi.R |only R/stock_uni.R |only README.md | 143 +-- build/partial.rdb |binary build/vignette.rds |binary data |only inst/doc/tutorial.R | 283 ++---- inst/doc/tutorial.Rmd | 189 +--- inst/doc/tutorial.html | 1424 ++++++++++++++++------------------ man/BayesChange-package.Rd | 4 man/ClustCpObj.Rd | 38 man/DetectCpObj.Rd | 40 man/clust_cp.Rd | 115 -- man/clust_cp_epi.Rd | 32 man/clust_cp_multi.Rd | 29 man/clust_cp_uni.Rd | 14 man/detect_cp.Rd | 85 -- man/detect_cp_epi.Rd | 26 man/detect_cp_multi.Rd | 18 man/detect_cp_uni.Rd | 12 man/epi_synthetic.Rd |only man/epi_synthetic_multi.Rd |only man/eu_inflation.Rd |only man/plot.ClustCpObj.Rd | 48 - man/plot.DetectCpObj.Rd | 23 man/plot_psm.ClustCpObj.Rd |only man/posterior_estimate.ClustCpObj.Rd | 18 man/posterior_estimate.DetectCpObj.Rd | 15 man/posterior_estimate.Rd | 7 man/print.ClustCpObj.Rd | 15 man/print.DetectCpObj.Rd | 16 man/stock_multi.Rd |only man/stock_uni.Rd |only man/summary.ClustCpObj.Rd | 15 man/summary.DetectCpObj.Rd | 15 src/Makevars | 2 src/Makevars.win | 2 src/code.cpp | 655 +++++++-------- tests/testthat/test-test-clust_cp.R | 21 vignettes/references.bib | 2 vignettes/tutorial.Rmd | 189 +--- 53 files changed, 2240 insertions(+), 2678 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-11-02 1.0
Title: Satellite Image Time Series Analysis for Earth Observation Data
Cubes
Description: An end-to-end toolkit for land use and land cover classification
using big Earth observation data. Builds satellite image data cubes from cloud collections.
Supports visualization methods for images and time series and
smoothing filters for dealing with noisy time series.
Enables merging of multi-source imagery (SAR, optical, DEM).
Includes functions for quality assessment of training samples using self-organized maps and
to reduce training samples imbalance. Provides machine learning algorithms including support vector machines,
random forests, extreme gradient boosting, multi-layer perceptrons,
temporal convolution neural networks, and temporal attention encoders.
Performs efficient classification of big Earth observation data cubes and includes
functions for post-classification smoothing based on Bayesian inference.
Enables best practices for estimating area and assessing accuracy of land change.
Includes object-based spatio-temporal segmentation for space-time OBIA.
Minimum recomme [...truncated...]
Author: Rolf Simoes [aut],
Gilberto Camara [aut, cre, ths],
Felipe Souza [aut],
Felipe Carlos [aut],
Lorena Santos [ctb],
Charlotte Pelletier [ctb],
Estefania Pizarro [ctb],
Karine Ferreira [ctb, ths],
Alber Sanchez [ctb],
Alexandre Assuncao [ctb],
Daniel Fa [...truncated...]
Maintainer: Gilberto Camara <gilberto.camara.inpe@gmail.com>
Diff between sits versions 1.5.3-2 dated 2025-10-07 and 1.5.4 dated 2026-01-14
sits-1.5.3-2/sits/man/sits_classify.segs_cube.Rd |only sits-1.5.3-2/sits/src/linear_interp.cpp |only sits-1.5.3-2/sits/tests/testthat/Rplots.pdf |only sits-1.5.4/sits/DESCRIPTION | 18 sits-1.5.4/sits/MD5 | 189 +-- sits-1.5.4/sits/NAMESPACE | 13 sits-1.5.4/sits/NEWS.md | 60 - sits-1.5.4/sits/R/RcppExports.R | 56 sits-1.5.4/sits/R/api_bbox.R | 20 sits-1.5.4/sits/R/api_check.R | 18 sits-1.5.4/sits/R/api_classify.R | 12 sits-1.5.4/sits/R/api_colors.R | 104 + sits-1.5.4/sits/R/api_cube.R | 49 sits-1.5.4/sits/R/api_file.R | 8 sits-1.5.4/sits/R/api_file_info.R | 5 sits-1.5.4/sits/R/api_gdal.R | 17 sits-1.5.4/sits/R/api_message.R | 19 sits-1.5.4/sits/R/api_mosaic.R | 12 sits-1.5.4/sits/R/api_patterns.R | 4 sits-1.5.4/sits/R/api_plot_raster.R | 30 sits-1.5.4/sits/R/api_plot_vector.R | 33 sits-1.5.4/sits/R/api_raster.R | 133 +- sits-1.5.4/sits/R/api_reclassify.R | 144 ++ sits-1.5.4/sits/R/api_segments.R | 4 sits-1.5.4/sits/R/api_tile.R | 96 + sits-1.5.4/sits/R/api_tmap.R | 54 sits-1.5.4/sits/R/api_view.R | 2 sits-1.5.4/sits/R/sits_classify.R | 15 sits-1.5.4/sits/R/sits_colors.R | 32 sits-1.5.4/sits/R/sits_cube_local.R | 43 sits-1.5.4/sits/R/sits_imputation.R | 122 ++ sits-1.5.4/sits/R/sits_labels.R | 114 + sits-1.5.4/sits/R/sits_lighttae.R | 2 sits-1.5.4/sits/R/sits_lstm_fcn.R | 21 sits-1.5.4/sits/R/sits_machine_learning.R | 13 sits-1.5.4/sits/R/sits_plot.R | 581 +++++++--- sits-1.5.4/sits/R/sits_reclassify.R | 15 sits-1.5.4/sits/R/sits_segmentation.R | 236 +++- sits-1.5.4/sits/R/sits_summary.R | 67 - sits-1.5.4/sits/R/sits_tae.R | 2 sits-1.5.4/sits/R/sits_tuning.R | 41 sits-1.5.4/sits/R/sits_view.R | 10 sits-1.5.4/sits/R/zzz.R | 1 sits-1.5.4/sits/build/partial.rdb |binary sits-1.5.4/sits/inst/WORDLIST | 18 sits-1.5.4/sits/inst/extdata/config_colors.yml | 18 sits-1.5.4/sits/inst/extdata/config_internals.yml | 13 sits-1.5.4/sits/inst/extdata/config_messages.yml | 17 sits-1.5.4/sits/inst/extdata/end_members |only sits-1.5.4/sits/inst/extdata/qgis/qgis_data_defined_properties.xml |only sits-1.5.4/sits/inst/extdata/qgis/qgis_style_vector_bottom.xml |only sits-1.5.4/sits/inst/extdata/qgis/qgis_style_vector_top.xml |only sits-1.5.4/sits/man/impute_mean.Rd |only sits-1.5.4/sits/man/impute_mean_window.Rd |only sits-1.5.4/sits/man/impute_median.Rd |only sits-1.5.4/sits/man/plot.class_cube.Rd | 17 sits-1.5.4/sits/man/plot.class_vector_cube.Rd | 19 sits-1.5.4/sits/man/plot.dem_cube.Rd | 18 sits-1.5.4/sits/man/plot.probs_cube.Rd | 14 sits-1.5.4/sits/man/plot.probs_vector_cube.Rd | 31 sits-1.5.4/sits/man/plot.raster_cube.Rd | 16 sits-1.5.4/sits/man/plot.sar_cube.Rd | 19 sits-1.5.4/sits/man/plot.sits_accuracy.Rd | 22 sits-1.5.4/sits/man/plot.sits_model.Rd |only sits-1.5.4/sits/man/plot.som_evaluate_cluster.Rd | 11 sits-1.5.4/sits/man/plot.uncertainty_cube.Rd | 17 sits-1.5.4/sits/man/plot.uncertainty_vector_cube.Rd | 31 sits-1.5.4/sits/man/plot.variance_cube.Rd | 19 sits-1.5.4/sits/man/plot.vector_cube.Rd | 21 sits-1.5.4/sits/man/plot.xgb_model.Rd | 8 sits-1.5.4/sits/man/sits_classify.vector_cube.Rd |only sits-1.5.4/sits/man/sits_colors_qgis.Rd | 6 sits-1.5.4/sits/man/sits_cube.results_cube.Rd | 25 sits-1.5.4/sits/man/sits_cube.vector_cube.Rd | 12 sits-1.5.4/sits/man/sits_labels-set-.class_cube.Rd | 6 sits-1.5.4/sits/man/sits_labels-set-.class_vector_cube.Rd |only sits-1.5.4/sits/man/sits_labels-set-.default.Rd | 4 sits-1.5.4/sits/man/sits_labels-set-.probs_cube.Rd | 6 sits-1.5.4/sits/man/sits_labels-set-.probs_vector_cube.Rd |only sits-1.5.4/sits/man/sits_labels-set-.sits.Rd | 2 sits-1.5.4/sits/man/sits_lighttae.Rd | 2 sits-1.5.4/sits/man/sits_lstm_fcn.Rd | 3 sits-1.5.4/sits/man/sits_reclassify.Rd | 6 sits-1.5.4/sits/man/sits_rfor.Rd | 2 sits-1.5.4/sits/man/sits_segment.Rd | 46 sits-1.5.4/sits/man/sits_slic.Rd | 35 sits-1.5.4/sits/man/sits_snic.Rd |only sits-1.5.4/sits/man/sits_tae.Rd | 2 sits-1.5.4/sits/man/sits_tuning.Rd | 35 sits-1.5.4/sits/man/sits_view.Rd | 10 sits-1.5.4/sits/src/RcppExports.cpp | 174 ++ sits-1.5.4/sits/src/impute_mean_window.cpp |only sits-1.5.4/sits/src/interp_linear.cpp |only sits-1.5.4/sits/src/interp_mean.cpp |only sits-1.5.4/sits/src/interp_median.cpp |only sits-1.5.4/sits/tests/testthat/test-classification.R | 98 + sits-1.5.4/sits/tests/testthat/test-color.R | 6 sits-1.5.4/sits/tests/testthat/test-cube-bdc.R | 49 sits-1.5.4/sits/tests/testthat/test-cube-vector.R | 16 sits-1.5.4/sits/tests/testthat/test-labels.R | 2 sits-1.5.4/sits/tests/testthat/test-plot.R | 4 sits-1.5.4/sits/tests/testthat/test-raster.R | 24 sits-1.5.4/sits/tests/testthat/test-segmentation.R | 92 + sits-1.5.4/sits/tests/testthat/test-variance.R | 4 sits-1.5.4/sits/tests/testthat/test-view.R | 13 105 files changed, 2495 insertions(+), 933 deletions(-)
Title: Hidden Markov Cognitive Diagnosis Models for Learning
Description: Fitting hidden Markov models of learning under the cognitive diagnosis framework.
The estimation of the hidden Markov diagnostic classification model,
the first order hidden Markov model, the reduced-reparameterized unified learning model,
and the joint learning model for responses and response times.
Author: Susu Zhang [aut],
Shiyu Wang [aut],
Yinghan Chen [aut],
Sunbeom Kwon [aut, cre]
Maintainer: Sunbeom Kwon <sunbeom2@illinois.edu>
Diff between hmcdm versions 2.1.2 dated 2025-10-22 and 2.1.3 dated 2026-01-14
DESCRIPTION | 6 MD5 | 20 +- NEWS.md | 8 + inst/doc/DINA_FOHM.html | 114 ++++++++-------- inst/doc/DINA_HO_RT_joint.html | 276 +++++++++++++++++++-------------------- inst/doc/DINA_HO_RT_sep.html | 134 +++++++++---------- inst/doc/HMDCM.html | 286 ++++++++++++++++++++--------------------- inst/doc/NIDA_indept.html | 118 ++++++++-------- inst/doc/rRUM_indept.html | 140 ++++++++++---------- src/Makevars | 2 src/Makevars.win | 2 11 files changed, 557 insertions(+), 549 deletions(-)
Title: Interface to the 'MODIS Land Products Subsets' Web Services
Description: Programmatic interface to the Oak Ridge National Laboratories
'MODIS Land Products Subsets' web services
(<https://modis.ornl.gov/data/modis_webservice.html>). Allows for easy
downloads of 'MODIS' time series directly to your R workspace or
your computer.
Author: Koen Hufkens [aut, cre] ,
BlueGreen Labs [cph, fnd]
Maintainer: Koen Hufkens <koen.hufkens@gmail.com>
Diff between MODISTools versions 1.1.5 dated 2023-09-16 and 1.1.6 dated 2026-01-14
DESCRIPTION | 17 +-- MD5 | 16 +- NAMESPACE | 1 R/mt_to_terra.R | 8 - build/vignette.rds |binary inst/doc/modistools-vignette.R | 74 ++++++------- inst/doc/modistools-vignette.Rmd | 2 inst/doc/modistools-vignette.html | 213 ++++++++++++++++---------------------- vignettes/modistools-vignette.Rmd | 2 9 files changed, 149 insertions(+), 184 deletions(-)
Title: Bayesian Psychometric Measurement Using 'Stan'
Description: Estimate diagnostic classification models (also called cognitive
diagnostic models) with 'Stan'. Diagnostic classification models are
confirmatory latent class models, as described by Rupp et al.
(2010, ISBN: 978-1-60623-527-0). Automatically generate 'Stan' code for the
general loglinear cognitive diagnostic diagnostic model proposed by
Henson et al. (2009) <doi:10.1007/s11336-008-9089-5> and other subtypes that
introduce additional model constraints. Using the generated 'Stan' code,
estimate the model evaluate the model's performance using model fit indices,
information criteria, and reliability metrics.
Author: W. Jake Thompson [aut, cre] ,
Jeffrey Hoover [aut] ,
Auburn Jimenez [ctb] ,
Nathan Jones [ctb] ,
Matthew Johnson [cph] `),
University of Kansas [cph],
Institute of Education Sciences [fnd]
Maintainer: W. Jake Thompson <wjakethompson@gmail.com>
Diff between measr versions 1.0.0 dated 2024-01-30 and 2.0.0 dated 2026-01-14
measr-1.0.0/measr/R/data.R |only measr-1.0.0/measr/R/extract.R |only measr-1.0.0/measr/R/fit-dcm.R |only measr-1.0.0/measr/R/loo-methods.R |only measr-1.0.0/measr/R/m2-methods.R |only measr-1.0.0/measr/R/measrfit-class.R |only measr-1.0.0/measr/R/methods.R |only measr-1.0.0/measr/R/model-evaluation.R |only measr-1.0.0/measr/R/posterior-methods.R |only measr-1.0.0/measr/R/ppmc.R |only measr-1.0.0/measr/R/priors.R |only measr-1.0.0/measr/R/reliability.R |only measr-1.0.0/measr/R/stan-dina.R |only measr-1.0.0/measr/R/stan-gqs.R |only measr-1.0.0/measr/R/stan-lcdm.R |only measr-1.0.0/measr/R/stan-strc.R |only measr-1.0.0/measr/R/stan-utils.R |only measr-1.0.0/measr/R/utils-display.R |only measr-1.0.0/measr/R/utils-fit.R |only measr-1.0.0/measr/R/utils-loo.R |only measr-1.0.0/measr/R/utils-methods.R |only measr-1.0.0/measr/R/utils-model-evaluation.R |only measr-1.0.0/measr/R/utils-pipe.R |only measr-1.0.0/measr/R/utils-priors.R |only measr-1.0.0/measr/data |only measr-1.0.0/measr/man/c.measrprior.Rd |only measr-1.0.0/measr/man/create_profiles.Rd |only measr-1.0.0/measr/man/default_dcm_priors.Rd |only measr-1.0.0/measr/man/ecpe.Rd |only measr-1.0.0/measr/man/figures/measr-timeline.png |only measr-1.0.0/measr/man/fit_m2.Rd |only measr-1.0.0/measr/man/get_parameters.Rd |only measr-1.0.0/measr/man/is.measrprior.Rd |only measr-1.0.0/measr/man/loo.measrfit.Rd |only measr-1.0.0/measr/man/loo_compare.measrfit.Rd |only measr-1.0.0/measr/man/mdm.Rd |only measr-1.0.0/measr/man/measrfit-class.Rd |only measr-1.0.0/measr/man/measrprior.Rd |only measr-1.0.0/measr/man/pipe.Rd |only measr-1.0.0/measr/man/predict.measrdcm.Rd |only measr-1.0.0/measr/man/waic.measrfit.Rd |only measr-1.0.0/measr/tests/testthat/_snaps |only measr-1.0.0/measr/tests/testthat/test-data.R |only measr-1.0.0/measr/tests/testthat/test-extract.R |only measr-1.0.0/measr/tests/testthat/test-m2-methods.R |only measr-1.0.0/measr/tests/testthat/test-methods.R |only measr-1.0.0/measr/tests/testthat/test-param-estimates.R |only measr-1.0.0/measr/tests/testthat/test-priors.R |only measr-1.0.0/measr/tests/testthat/test-reliability.R |only measr-1.0.0/measr/tests/testthat/test-stan-scripts.R |only measr-1.0.0/measr/tests/testthat/test-stan-utils.R |only measr-1.0.0/measr/tests/testthat/test-utils-display.R |only measr-1.0.0/measr/tests/testthat/test-utils-priors.R |only measr-2.0.0/measr/DESCRIPTION | 51 measr-2.0.0/measr/MD5 | 229 - measr-2.0.0/measr/NAMESPACE | 78 measr-2.0.0/measr/NEWS.md | 85 measr-2.0.0/measr/R/add-model-evaluation.R |only measr-2.0.0/measr/R/cdi.R |only measr-2.0.0/measr/R/data-checks.R | 363 -- measr-2.0.0/measr/R/dep-fit-dcm.R |only measr-2.0.0/measr/R/import-standalone-obj-type.R |only measr-2.0.0/measr/R/import-standalone-types-check.R |only measr-2.0.0/measr/R/measr-package.R | 12 measr-2.0.0/measr/R/read-write.R |only measr-2.0.0/measr/R/reexports.R | 70 measr-2.0.0/measr/R/stanmodels.R | 3 measr-2.0.0/measr/R/sysdata.rda |binary measr-2.0.0/measr/R/utils-extract.R | 529 ++- measr-2.0.0/measr/R/utils-ppmc.R |only measr-2.0.0/measr/R/utils-qmatrix-validation.R |only measr-2.0.0/measr/R/utils-reliability.R | 263 - measr-2.0.0/measr/R/utils-score.R |only measr-2.0.0/measr/R/utils-tidy-eval.R | 18 measr-2.0.0/measr/R/utils.R | 187 - measr-2.0.0/measr/R/zxx-class-stan-classes.R |only measr-2.0.0/measr/R/zzz-class-dcm-estimate.R |only measr-2.0.0/measr/R/zzz-methods-aic-bic.R |only measr-2.0.0/measr/R/zzz-methods-bayes-factor.R |only measr-2.0.0/measr/R/zzz-methods-extract.R |only measr-2.0.0/measr/R/zzz-methods-get-draws.R |only measr-2.0.0/measr/R/zzz-methods-loglik-array.R |only measr-2.0.0/measr/R/zzz-methods-loo-waic.R |only measr-2.0.0/measr/R/zzz-methods-m2.R |only measr-2.0.0/measr/R/zzz-methods-measfit-utils.R |only measr-2.0.0/measr/R/zzz-methods-posterior.R |only measr-2.0.0/measr/R/zzz-methods-ppmc.R |only measr-2.0.0/measr/R/zzz-methods-qmatrix-validation.R |only measr-2.0.0/measr/R/zzz-methods-reliability.R |only measr-2.0.0/measr/R/zzz-methods-score.R |only measr-2.0.0/measr/R/zzz-methods-stan-args.R |only measr-2.0.0/measr/R/zzz-methods-stan-call.R |only measr-2.0.0/measr/R/zzz-methods-stan-data.R |only measr-2.0.0/measr/R/zzz-methods-yens-q3.R |only measr-2.0.0/measr/R/zzz.R |only measr-2.0.0/measr/README.md | 89 measr-2.0.0/measr/build/partial.rdb |binary measr-2.0.0/measr/build/vignette.rds |binary measr-2.0.0/measr/inst/WORDLIST | 52 measr-2.0.0/measr/inst/doc/measr.R | 71 measr-2.0.0/measr/inst/doc/measr.Rmd | 70 measr-2.0.0/measr/inst/doc/measr.html | 174 - measr-2.0.0/measr/inst/doc/paper.Rmd | 2 measr-2.0.0/measr/inst/doc/paper.html | 76 measr-2.0.0/measr/inst/stan/gqs_loglik.stan | 5 measr-2.0.0/measr/inst/stan/gqs_ppmc.stan | 31 measr-2.0.0/measr/inst/stan/gqs_ppmc_probs.stan |only measr-2.0.0/measr/inst/stan/gqs_probs.stan | 13 measr-2.0.0/measr/inst/stan/test_dina.stan | 39 measr-2.0.0/measr/man/aic-bic.Rd |only measr-2.0.0/measr/man/bayes_factor.Rd |only measr-2.0.0/measr/man/cdi.Rd |only measr-2.0.0/measr/man/dcm_estimate.Rd |only measr-2.0.0/measr/man/figures/lifecycle-deprecated.svg |only measr-2.0.0/measr/man/figures/lifecycle-experimental.svg |only measr-2.0.0/measr/man/figures/lifecycle-stable.svg |only measr-2.0.0/measr/man/figures/lifecycle-superseded.svg |only measr-2.0.0/measr/man/fit_ppmc.Rd | 118 measr-2.0.0/measr/man/log_mll.Rd |only measr-2.0.0/measr/man/loglik_array.Rd |only measr-2.0.0/measr/man/loo-waic.Rd |only measr-2.0.0/measr/man/m2.Rd |only measr-2.0.0/measr/man/measr-package.Rd | 15 measr-2.0.0/measr/man/measr_dcm.Rd | 63 measr-2.0.0/measr/man/measr_extract.Rd | 132 measr-2.0.0/measr/man/measrdcm.Rd |only measr-2.0.0/measr/man/model_evaluation.Rd | 114 measr-2.0.0/measr/man/qmatrix_validation.Rd |only measr-2.0.0/measr/man/reexports.Rd | 33 measr-2.0.0/measr/man/reliability.Rd | 39 measr-2.0.0/measr/man/score.Rd |only measr-2.0.0/measr/man/stan-classes.Rd |only measr-2.0.0/measr/man/tidyeval.Rd | 18 measr-2.0.0/measr/man/yens_q3.Rd |only measr-2.0.0/measr/src/Makevars.win | 2 measr-2.0.0/measr/src/RcppExports.cpp | 2 measr-2.0.0/measr/src/stanExports_gqs_loglik.cc | 34 measr-2.0.0/measr/src/stanExports_gqs_loglik.h | 1022 ++--- measr-2.0.0/measr/src/stanExports_gqs_ppmc.cc | 34 measr-2.0.0/measr/src/stanExports_gqs_ppmc.h | 1309 ++----- measr-2.0.0/measr/src/stanExports_gqs_ppmc_probs.cc |only measr-2.0.0/measr/src/stanExports_gqs_ppmc_probs.h |only measr-2.0.0/measr/src/stanExports_gqs_probs.cc | 34 measr-2.0.0/measr/src/stanExports_gqs_probs.h | 1158 +++--- measr-2.0.0/measr/src/stanExports_test_dina.cc | 34 measr-2.0.0/measr/src/stanExports_test_dina.h | 1735 ++++------ measr-2.0.0/measr/tests/spelling.R | 7 measr-2.0.0/measr/tests/testthat/helper-skip.R |only measr-2.0.0/measr/tests/testthat/setup.R | 37 measr-2.0.0/measr/tests/testthat/test-add-model-evaluation.R |only measr-2.0.0/measr/tests/testthat/test-cdi.R |only measr-2.0.0/measr/tests/testthat/test-data-checks.R | 589 --- measr-2.0.0/measr/tests/testthat/test-dep-fit-dcm.R |only measr-2.0.0/measr/tests/testthat/test-ecpe.R | 522 ++- measr-2.0.0/measr/tests/testthat/test-mcmc.R | 1162 +++++- measr-2.0.0/measr/tests/testthat/test-measr-package.R |only measr-2.0.0/measr/tests/testthat/test-pathfinder.R |only measr-2.0.0/measr/tests/testthat/test-utils-qmatrix-validation.R |only measr-2.0.0/measr/tests/testthat/test-utils.R | 44 measr-2.0.0/measr/tests/testthat/test-variational.R |only measr-2.0.0/measr/tests/testthat/test-zxx-class-stan-classes.R |only measr-2.0.0/measr/tests/testthat/test-zzz-class-dcm-estimate.R |only measr-2.0.0/measr/tests/testthat/test-zzz-methods-aic-bic.R |only measr-2.0.0/measr/tests/testthat/test-zzz-methods-extract.R |only measr-2.0.0/measr/tests/testthat/test-zzz-methods-m2.R |only measr-2.0.0/measr/tests/testthat/test-zzz-methods-qmatrix-validation.R |only measr-2.0.0/measr/tests/testthat/test-zzz-methods-reliability.R |only measr-2.0.0/measr/tests/testthat/test-zzz-methods-score.R |only measr-2.0.0/measr/tests/testthat/test-zzz-methods-yens-q3.R |only measr-2.0.0/measr/vignettes/fits/ecpe-optim-lcdm.rds |binary measr-2.0.0/measr/vignettes/measr.Rmd | 70 measr-2.0.0/measr/vignettes/paper.Rmd | 2 172 files changed, 5312 insertions(+), 5527 deletions(-)
Title: Functionalities for the 'INLA' Package
Description: Contain code to work with a C struct, in short
cgeneric, to define a Gaussian Markov random (GMRF) model.
The cgeneric contain code to specify GMRF elements such as
the graph and the precision matrix, and also the initial and
prior for its parameters, useful for model inference.
It can be accessed from a C program and is the recommended
way to implement new GMRF models in the 'INLA' package
(<https://www.r-inla.org>).
The 'INLAtools' implement functions to evaluate
each one of the model specifications from R.
The implemented functionalities leverage the use
of 'cgeneric' models and provide a way to debug
the code as well to work with the prior for the
model parameters and to sample from it.
A very useful functionality is the Kronecker product method
that creates a new model from multiple cgeneric models.
It also works with the rgeneric, the R version of the
cgeneric intended to easy try implementation of new GMRF models.
The Kronecker between two cgeneric models was used in
Sterr [...truncated...]
Author: Elias Teixeira Krainski [cre, aut, cph] ,
Finn Lindgren [aut] ,
Haavard Rue’ [aut]
Maintainer: Elias Teixeira Krainski <eliaskrainski@gmail.com>
Diff between INLAtools versions 0.0.6 dated 2025-12-19 and 0.0.7 dated 2026-01-14
INLAtools-0.0.6/INLAtools/R/cgeneric_kronecker.R |only INLAtools-0.0.6/INLAtools/man/inla.cgeneric.sample.Rd |only INLAtools-0.0.6/INLAtools/man/methods.Rd |only INLAtools-0.0.7/INLAtools/DESCRIPTION | 9 - INLAtools-0.0.7/INLAtools/MD5 | 46 ++++---- INLAtools-0.0.7/INLAtools/NAMESPACE | 8 + INLAtools-0.0.7/INLAtools/R/aaa_methods.R | 16 +- INLAtools-0.0.7/INLAtools/R/cgeneric.R | 100 ++++++++++-------- INLAtools-0.0.7/INLAtools/R/cgeneric_generic0.R | 28 ++--- INLAtools-0.0.7/INLAtools/R/cgeneric_utils.R | 84 ++++----------- INLAtools-0.0.7/INLAtools/R/inla_methods.R | 26 +++- INLAtools-0.0.7/INLAtools/R/kronecker.R |only INLAtools-0.0.7/INLAtools/R/rgeneric.R | 83 +++----------- INLAtools-0.0.7/INLAtools/R/rgeneric_utils.R |only INLAtools-0.0.7/INLAtools/demo/00Index | 6 - INLAtools-0.0.7/INLAtools/demo/cgeneric.R | 9 + INLAtools-0.0.7/INLAtools/demo/kronecker.R | 10 + INLAtools-0.0.7/INLAtools/demo/kronecker3.R |only INLAtools-0.0.7/INLAtools/demo/prior.R |only INLAtools-0.0.7/INLAtools/man/INLAtools-methods.Rd |only INLAtools-0.0.7/INLAtools/man/cgeneric-class.Rd | 53 +++++++-- INLAtools-0.0.7/INLAtools/man/cgeneric_generic0.Rd | 9 - INLAtools-0.0.7/INLAtools/man/cgeneric_get.Rd | 3 INLAtools-0.0.7/INLAtools/man/extraconstr.Rd | 2 INLAtools-0.0.7/INLAtools/man/kronecker.Rd | 2 INLAtools-0.0.7/INLAtools/man/multi_generic_model.Rd | 10 + INLAtools-0.0.7/INLAtools/man/prec.inla.Rd |only INLAtools-0.0.7/INLAtools/man/rgeneric-class.Rd | 40 +++---- INLAtools-0.0.7/INLAtools/man/rgeneric_get.Rd |only 29 files changed, 263 insertions(+), 281 deletions(-)
Title: Find the URL to the 'Favicon' for a Website
Description: Finds the URL to the 'favicon' for a website. This is useful if you
want to display the 'favicon' in an HTML document or web application,
especially if the website is behind a firewall.
Author: John Blischak [aut, cre]
Maintainer: John Blischak <jdblischak@gmail.com>
Diff between faviconPlease versions 0.1.4 dated 2025-05-15 and 0.2.0 dated 2026-01-14
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- NEWS.md | 7 +++++++ R/faviconPlease.R | 15 +++++++++++++++ man/faviconLink.Rd | 3 ++- tests/tinytest.R | 10 ++-------- 6 files changed, 35 insertions(+), 18 deletions(-)
Title: Read and Manipulate Camera Trap Data Packages
Description: Read and manipulate Camera Trap Data Packages ('Camtrap DP').
'Camtrap DP' (<https://camtrap-dp.tdwg.org>) is a data exchange format
for camera trap data. With 'camtrapdp' you can read, filter and
transform data (including to Darwin Core) before further analysis in
e.g. 'camtraptor' or 'camtrapR'.
Author: Peter Desmet [aut, cre] ),
Sanne Govaert [aut] ),
Pieter Huybrechts [aut] ),
Damiano Oldoni [aut] ),
Research Institute for Nature and Forest [cph] ,
Research Foundation - Flanders [fnd]
Maintainer: Peter Desmet <peter.desmet@inbo.be>
Diff between camtrapdp versions 0.4.0 dated 2025-06-11 and 0.5.0 dated 2026-01-14
DESCRIPTION | 10 - MD5 | 51 +++++----- NEWS.md | 6 + R/example_dataset.R | 2 R/read_camtrapdp.R | 17 ++- R/round_coordinates.R | 2 R/taxa.R | 2 R/update_metadata.R | 2 R/upgrade.R | 14 ++ R/utils.R | 27 +++++ R/version.R | 9 - R/write_camtrapdp.R | 13 ++ R/write_dwc.R | 2 R/write_eml.R | 18 +-- build/partial.rdb |binary man/camtrapdp-package.Rd | 2 man/read_camtrapdp.Rd | 4 tests/testthat/_snaps/merge_camtrapdp/datapackage_different_xy.json | 10 - tests/testthat/_snaps/merge_camtrapdp/datapackage_identical_xy.json | 10 - tests/testthat/_snaps/write_camtrapdp |only tests/testthat/_snaps/write_eml/eml.xml | 8 - tests/testthat/helper.R | 10 - tests/testthat/test-example_dataset.R | 2 tests/testthat/test-merge_camtrapdp.R | 2 tests/testthat/test-read_camtrapdp.R | 23 ++-- tests/testthat/test-round_coordinates.R | 8 + tests/testthat/test-write_camtrapdp.R | 36 +++++-- 27 files changed, 190 insertions(+), 100 deletions(-)
Title: Create Publication Ready Kaplan-Meier Plots
Description: Incorporate various statistics and layout customization options to enhance the efficiency and adaptability of the Kaplan-Meier plots.
Author: Vithersan Somasundaram [aut],
Charlotte Micheloud [cre, ctb],
Katrin Gobat [ctb],
Stefanie Hayoz [ctb],
SAKK, CC [cph, fnd],
SCTO, Statistics [fnd]
Maintainer: Charlotte Micheloud <Charlotte.Micheloud@sakk.ch>
Diff between survSAKK versions 1.3.2 dated 2025-05-15 and 1.3.3 dated 2026-01-14
DESCRIPTION | 6 - MD5 | 8 - NEWS.md | 193 +++++++++++++++++++++++++----------------------- R/surv.plot.R | 2 inst/doc/surv.plot.html | 82 ++++++++++---------- 5 files changed, 150 insertions(+), 141 deletions(-)
Title: 'Rcpp' Bindings for the 'simdjson' Header-Only Library for
'JSON' Parsing
Description: The 'JSON' format is ubiquitous for data interchange, and the
'simdjson' library written by Daniel Lemire (and many contributors) provides a
high-performance parser for these files which by relying on parallel 'SIMD'
instruction manages to parse these files as faster than disk speed. See the
<doi:10.48550/arXiv.1902.08318> paper for more details about 'simdjson'. This
package parses 'JSON' from string, file, or remote URLs under a variety of
settings.
Author: Dirk Eddelbuettel [aut, cre] ,
Brendan Knapp [aut] ,
Daniel Lemire [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppSimdJson versions 0.1.14 dated 2025-09-14 and 0.1.15 dated 2026-01-14
ChangeLog | 23 DESCRIPTION | 9 MD5 | 20 README.md | 2 build/partial.rdb |binary inst/NEWS.Rd | 9 inst/include/simdjson.cpp | 1227 ++ inst/include/simdjson.h |23780 +++++++++++++++++++++++++++++++++++++--------- src/Makevars | 2 src/Makevars.win | 2 src/RcppExports.cpp | 6 11 files changed, 20251 insertions(+), 4829 deletions(-)
Title: (Bayesian) Additive Voronoi Tessellations
Description: Implements the Bayesian Additive Voronoi Tessellation
model for non-parametric regression and machine learning as introduced
in Stone and Gosling (2025) <doi:10.1080/10618600.2024.2414104>.
This package provides a flexible alternative to BART (Bayesian Additive
Regression Trees) using Voronoi tessellations instead of trees. Users can
fit Bayesian regression models, estimate posterior distributions, and
visualise the resulting tessellations. It is particularly useful for spatial
data analysis, machine learning regression, complex function approximation
and Bayesian modeling where the underlying structure is unknown. The method
is well-suited to capturing spatial patterns and non-linear relationships.
Author: Adam Stone [aut] ,
John Paul Gosling [aut, cre]
Maintainer: John Paul Gosling <john-paul.gosling@durham.ac.uk>
Diff between AddiVortes versions 0.4.7 dated 2026-01-13 and 0.4.8 dated 2026-01-14
DESCRIPTION | 8 ++++---- MD5 | 10 +++++----- build/vignette.rds |binary inst/doc/introduction.html | 6 +++--- inst/doc/prediction.html | 10 +++++----- src/addi_vortes_code.cpp | 15 ++++++++++----- 6 files changed, 27 insertions(+), 22 deletions(-)
Title: Network Meta-Analysis of Multiple Diagnostic Tests
Description: Provides statistical methods for network meta-analysis
of 1–5 diagnostic tests to simultaneously compare multiple tests within a
missing data framework, including:
- Bayesian hierarchical model for network meta-analysis of multiple
diagnostic tests
(Ma, Lian, Chu, Ibrahim, and Chen (2018) <doi:10.1093/biostatistics/kxx025>)
- Bayesian Hierarchical Summary Receiver Operating Characteristic Model
for Network Meta-Analysis of Diagnostic Tests
(Lian, Hodges, and Chu (2019) <doi:10.1080/01621459.2018.1476239>).
Author: Xing Xing [aut, cre] ,
Boyang Lu [aut],
Lifeng Lin [aut],
Qinshu Lian [aut],
James S. Hodges [aut],
Yong Chen [aut],
Haitao Chu [aut]
Maintainer: Xing Xing <xxing8@jh.edu>
Diff between NMADTA versions 0.1.1 dated 2025-10-29 and 0.1.2 dated 2026-01-14
DESCRIPTION | 6 MD5 | 30 ++-- R/nmadt.hierarchical.MNAR.R | 169 ++++++++++++++++++++++---- R/nmadt.hierarchical.R | 162 +++++++++++++++++++++--- R/nmadt.hsroc.MNAR.R | 131 +++++++++++++++++--- R/nmadt.hsroc.R | 122 ++++++++++++++++-- build/partial.rdb |binary inst/JAGSmodels/model3MNAR.txt | 2 inst/JAGSmodels/model_hsroc.txt | 2 man/nmadt.hierarchical.MNAR.Rd | 39 ++++-- man/nmadt.hierarchical.Rd | 17 ++ man/nmadt.hsroc.MNAR.Rd | 20 ++- tests/testthat/test-nmadt.hierarchical.MNAR.R | 10 - tests/testthat/test-nmadt.hierarchical.R | 54 ++++---- tests/testthat/test-nmadt.hsroc.MNAR.R | 10 - tests/testthat/test-nmadt.hsroc.R | 10 - 16 files changed, 627 insertions(+), 157 deletions(-)
Title: Comprehensive Analysis of Nucleotide Conversion Sequencing Data
Description: Nucleotide conversion sequencing experiments have been
developed to add a temporal dimension to RNA-seq and single-cell RNA-seq. Such
experiments require specialized tools for primary processing such as GRAND-SLAM,
(see 'Jürges et al' <doi:10.1093/bioinformatics/bty256>) and specialized tools for
downstream analyses. 'grandR' provides a comprehensive toolbox for quality control,
kinetic modeling, differential gene expression analysis and visualization of such data.
Fast Wilcoxon tests are supported via the 'presto' package (available at <https://github.com/immunogenomics/presto>).
Author: Florian Erhard [aut, cre] ,
Teresa Rummel [ctb],
Julian Selke [ctb]
Maintainer: Florian Erhard <Florian.Erhard@informatik.uni-regensburg.de>
Diff between grandR versions 0.2.6 dated 2025-01-22 and 0.2.7 dated 2026-01-14
grandR-0.2.6/grandR/man/ComputeAbsolute.Rd |only grandR-0.2.7/grandR/DESCRIPTION | 22 +- grandR-0.2.7/grandR/MD5 | 53 +++--- grandR-0.2.7/grandR/NAMESPACE | 3 grandR-0.2.7/grandR/NEWS.md | 12 + grandR-0.2.7/grandR/R/diffexp.R | 80 ++++++++- grandR-0.2.7/grandR/R/grandR.R | 47 +++-- grandR-0.2.7/grandR/R/load.R | 191 +++++++++++++--------- grandR-0.2.7/grandR/R/paramest.R | 99 ++++++++++- grandR-0.2.7/grandR/R/paramest_mix.R |only grandR-0.2.7/grandR/R/plot.R | 67 ++++++- grandR-0.2.7/grandR/R/processing.R | 37 ---- grandR-0.2.7/grandR/R/seurat.R | 75 ++++++-- grandR-0.2.7/grandR/R/shiny.R | 11 - grandR-0.2.7/grandR/R/utils.R | 31 +++ grandR-0.2.7/grandR/inst/doc/getting-started.html | 6 grandR-0.2.7/grandR/man/ApplyContrasts.Rd | 3 grandR-0.2.7/grandR/man/CreateConvolutionTable.Rd | 8 grandR-0.2.7/grandR/man/GetData.Rd | 5 grandR-0.2.7/grandR/man/GetMatrix.Rd | 3 grandR-0.2.7/grandR/man/GetTable.Rd | 5 grandR-0.2.7/grandR/man/PlotScatter.Rd | 8 grandR-0.2.7/grandR/man/ReadGRAND3.Rd | 10 - grandR-0.2.7/grandR/man/Renamer.Rd |only grandR-0.2.7/grandR/man/ServeGrandR.Rd | 5 grandR-0.2.7/grandR/man/UseNtrSlot.Rd | 4 grandR-0.2.7/grandR/man/Wilcoxon.Rd |only grandR-0.2.7/grandR/src/fastsparsemat.c | 24 +- grandR-0.2.7/grandR/src/packagename_init.c | 2 grandR-0.2.7/grandR/src/sparse2dense.c |only 30 files changed, 570 insertions(+), 241 deletions(-)
Title: Sitree Extensions
Description: Provides extensions for package 'sitree' for allometric variables, growth, mortality, recruitment, management, tree removal and external modifiers functions.
Author: Clara Anton Fernandez [aut] ,
Ignacio Sevillano [cre]
Maintainer: Ignacio Sevillano <ignacio.sevillano@nibio.no>
Diff between sitreeE versions 0.0-9 dated 2025-03-18 and 0.0-10 dated 2026-01-14
DESCRIPTION | 14 ++++++++------ MD5 | 7 ++++--- NEWS.md |only R/Biomass_sitree.R | 24 ++++++++++++------------ R/Volume_sitree.R | 20 ++++++++++---------- 5 files changed, 34 insertions(+), 31 deletions(-)
Title: Vectorised Probability Distributions
Description: Vectorised distribution objects with tools for manipulating,
visualising, and using probability distributions. Designed to allow model
prediction outputs to return distributions rather than their parameters,
allowing users to directly interact with predictive distributions in a
data-oriented workflow. In addition to providing generic replacements for
p/d/q/r functions, other useful statistics can be computed including means,
variances, intervals, and highest density regions.
Author: Mitchell O'Hara-Wild [aut, cre] ,
Matthew Kay [aut] ,
Alex Hayes [aut] ,
Rob Hyndman [aut] ,
Earo Wang [ctb] ,
Vencislav Popov [ctb]
Maintainer: Mitchell O'Hara-Wild <mail@mitchelloharawild.com>
Diff between distributional versions 0.5.0 dated 2024-09-17 and 0.6.0 dated 2026-01-14
distributional-0.5.0/distributional/R/inflated.R |only distributional-0.5.0/distributional/R/mixture.R |only distributional-0.5.0/distributional/R/transformed.R |only distributional-0.5.0/distributional/R/truncated.R |only distributional-0.5.0/distributional/tests/testthat/Rplots.pdf |only distributional-0.6.0/distributional/DESCRIPTION | 25 - distributional-0.6.0/distributional/MD5 | 216 +++++----- distributional-0.6.0/distributional/NAMESPACE | 35 + distributional-0.6.0/distributional/NEWS.md | 37 + distributional-0.6.0/distributional/R/default.R | 23 + distributional-0.6.0/distributional/R/dist_bernoulli.R | 25 - distributional-0.6.0/distributional/R/dist_beta.R | 57 ++ distributional-0.6.0/distributional/R/dist_binomial.R | 25 + distributional-0.6.0/distributional/R/dist_burr.R | 45 ++ distributional-0.6.0/distributional/R/dist_categorical.R | 71 ++- distributional-0.6.0/distributional/R/dist_cauchy.R | 9 distributional-0.6.0/distributional/R/dist_chisq.R | 92 +++- distributional-0.6.0/distributional/R/dist_degenerate.R | 51 +- distributional-0.6.0/distributional/R/dist_exponential.R | 42 + distributional-0.6.0/distributional/R/dist_f.R | 125 ++++- distributional-0.6.0/distributional/R/dist_gamma.R | 9 distributional-0.6.0/distributional/R/dist_geometric.R | 36 + distributional-0.6.0/distributional/R/dist_gev.R | 173 ++++++-- distributional-0.6.0/distributional/R/dist_gh.R | 35 + distributional-0.6.0/distributional/R/dist_gk.R | 4 distributional-0.6.0/distributional/R/dist_gpd.R | 151 ++++++ distributional-0.6.0/distributional/R/dist_gumbel.R | 108 ++++- distributional-0.6.0/distributional/R/dist_hypergeometric.R | 42 + distributional-0.6.0/distributional/R/dist_inflated.R |only distributional-0.6.0/distributional/R/dist_inverse_exponential.R | 44 ++ distributional-0.6.0/distributional/R/dist_inverse_gamma.R | 52 ++ distributional-0.6.0/distributional/R/dist_inverse_gaussian.R | 59 ++ distributional-0.6.0/distributional/R/dist_laplace.R |only distributional-0.6.0/distributional/R/dist_logarithmic.R | 45 ++ distributional-0.6.0/distributional/R/dist_logistic.R | 21 distributional-0.6.0/distributional/R/dist_lognormal.R | 38 - distributional-0.6.0/distributional/R/dist_missing.R | 48 ++ distributional-0.6.0/distributional/R/dist_mixture.R |only distributional-0.6.0/distributional/R/dist_multinomial.R | 112 ++++- distributional-0.6.0/distributional/R/dist_multivariate_normal.R | 79 +++ distributional-0.6.0/distributional/R/dist_multivariate_t.R |only distributional-0.6.0/distributional/R/dist_negative_binomial.R | 49 +- distributional-0.6.0/distributional/R/dist_normal.R | 13 distributional-0.6.0/distributional/R/dist_pareto.R | 58 ++ distributional-0.6.0/distributional/R/dist_percentile.R | 58 ++ distributional-0.6.0/distributional/R/dist_poisson.R | 37 + distributional-0.6.0/distributional/R/dist_poisson_inverse_gaussian.R | 56 ++ distributional-0.6.0/distributional/R/dist_sample.R | 90 ++++ distributional-0.6.0/distributional/R/dist_student_t.R | 107 ++++ distributional-0.6.0/distributional/R/dist_studentized_range.R | 25 - distributional-0.6.0/distributional/R/dist_transformed.R |only distributional-0.6.0/distributional/R/dist_truncated.R |only distributional-0.6.0/distributional/R/dist_uniform.R | 62 +- distributional-0.6.0/distributional/R/dist_weibull.R | 78 +++ distributional-0.6.0/distributional/R/dist_wrap.R | 6 distributional-0.6.0/distributional/R/distribution.R | 42 + distributional-0.6.0/distributional/R/hdr.R | 9 distributional-0.6.0/distributional/R/support.R | 2 distributional-0.6.0/distributional/R/utils.R | 24 + distributional-0.6.0/distributional/README.md | 3 distributional-0.6.0/distributional/man/dist_bernoulli.Rd | 26 + distributional-0.6.0/distributional/man/dist_beta.Rd | 50 ++ distributional-0.6.0/distributional/man/dist_binomial.Rd | 24 - distributional-0.6.0/distributional/man/dist_burr.Rd | 47 ++ distributional-0.6.0/distributional/man/dist_categorical.Rd | 61 ++ distributional-0.6.0/distributional/man/dist_cauchy.Rd | 5 distributional-0.6.0/distributional/man/dist_chisq.Rd | 92 +++- distributional-0.6.0/distributional/man/dist_degenerate.Rd | 53 +- distributional-0.6.0/distributional/man/dist_exponential.Rd | 40 + distributional-0.6.0/distributional/man/dist_f.Rd | 122 ++++- distributional-0.6.0/distributional/man/dist_gamma.Rd | 7 distributional-0.6.0/distributional/man/dist_geometric.Rd | 37 + distributional-0.6.0/distributional/man/dist_gev.Rd | 165 ++++++- distributional-0.6.0/distributional/man/dist_gh.Rd | 38 + distributional-0.6.0/distributional/man/dist_gk.Rd | 7 distributional-0.6.0/distributional/man/dist_gpd.Rd | 120 +++++ distributional-0.6.0/distributional/man/dist_gumbel.Rd | 104 +++- distributional-0.6.0/distributional/man/dist_hypergeometric.Rd | 41 + distributional-0.6.0/distributional/man/dist_inflated.Rd | 95 ++++ distributional-0.6.0/distributional/man/dist_inverse_exponential.Rd | 46 ++ distributional-0.6.0/distributional/man/dist_inverse_gamma.Rd | 54 ++ distributional-0.6.0/distributional/man/dist_inverse_gaussian.Rd | 61 ++ distributional-0.6.0/distributional/man/dist_laplace.Rd |only distributional-0.6.0/distributional/man/dist_logarithmic.Rd | 47 ++ distributional-0.6.0/distributional/man/dist_logistic.Rd | 19 distributional-0.6.0/distributional/man/dist_lognormal.Rd | 38 - distributional-0.6.0/distributional/man/dist_missing.Rd | 49 ++ distributional-0.6.0/distributional/man/dist_mixture.Rd | 118 +++++ distributional-0.6.0/distributional/man/dist_multinomial.Rd | 53 +- distributional-0.6.0/distributional/man/dist_multivariate_normal.Rd | 62 ++ distributional-0.6.0/distributional/man/dist_multivariate_t.Rd |only distributional-0.6.0/distributional/man/dist_negative_binomial.Rd | 49 +- distributional-0.6.0/distributional/man/dist_normal.Rd | 9 distributional-0.6.0/distributional/man/dist_pareto.Rd | 60 ++ distributional-0.6.0/distributional/man/dist_percentile.Rd | 58 ++ distributional-0.6.0/distributional/man/dist_poisson.Rd | 33 + distributional-0.6.0/distributional/man/dist_poisson_inverse_gaussian.Rd | 57 ++ distributional-0.6.0/distributional/man/dist_sample.Rd | 86 +++ distributional-0.6.0/distributional/man/dist_student_t.Rd | 106 ++++ distributional-0.6.0/distributional/man/dist_studentized_range.Rd | 26 - distributional-0.6.0/distributional/man/dist_transformed.Rd | 93 ++++ distributional-0.6.0/distributional/man/dist_truncated.Rd | 62 ++ distributional-0.6.0/distributional/man/dist_uniform.Rd | 60 +- distributional-0.6.0/distributional/man/dist_weibull.Rd | 77 +++ distributional-0.6.0/distributional/man/dist_wrap.Rd | 5 distributional-0.6.0/distributional/man/has_symmetry.Rd |only distributional-0.6.0/distributional/man/new_dist.Rd | 2 distributional-0.6.0/distributional/man/new_support_region.Rd | 4 distributional-0.6.0/distributional/tests/testthat/test-apply.R | 12 distributional-0.6.0/distributional/tests/testthat/test-dist-laplace.R |only distributional-0.6.0/distributional/tests/testthat/test-dist-multinomial.R | 25 + distributional-0.6.0/distributional/tests/testthat/test-dist-multivariate-normal.R | 4 distributional-0.6.0/distributional/tests/testthat/test-dist-multivariate-t.R |only distributional-0.6.0/distributional/tests/testthat/test-dist-normal.R | 1 distributional-0.6.0/distributional/tests/testthat/test-mixture.R | 22 + distributional-0.6.0/distributional/tests/testthat/test_gev.R | 6 distributional-0.6.0/distributional/tests/testthat/test_gpd.R | 6 117 files changed, 4410 insertions(+), 787 deletions(-)
More information about distributional at CRAN
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Title: Access Drug Regulatory Data via FDA and Health Canada APIs
Description: Provides functions to access drug regulatory data from public RESTful APIs
including the 'FDA Open API' and the 'Health Canada Drug Product Database API',
retrieving real-time or historical information on drug approvals, adverse events,
recalls, and product details. Additionally, the package includes a curated collection
of open datasets focused on drugs, pharmaceuticals, treatments, and clinical studies.
These datasets cover diverse topics such as treatment dosages, pharmacological studies,
placebo effects, drug reactions, misuses of pain relievers, and vaccine effectiveness.
The package supports reproducible research and teaching in pharmacology, medicine,
and healthcare by integrating reliable international APIs and structured datasets
from public, academic, and government sources.
For more information on the APIs, see:
'FDA API' <https://open.fda.gov/apis/> and
'Health Canada API' <https://health-products.canada.ca/api/documentation/dpd-documentation-en.html>.
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between MedxR versions 0.1.0 dated 2025-10-16 and 0.1.1 dated 2026-01-14
DESCRIPTION | 6 - MD5 | 115 ++++++++++++------------ NAMESPACE | 1 NEWS.md |only R/data-documentation.R | 4 R/get_fda_adverse_events.R | 4 R/get_fda_drug_labels.R | 4 R/get_fda_drugs_approved.R | 4 R/get_fda_ndc_directory.R | 4 R/get_hc_active_ingredients.R | 4 R/get_hc_companies.R | 4 R/get_hc_din.R | 4 R/get_hc_drug_by_din.R | 73 +++++++++++++-- R/get_hc_drug_products.R | 4 R/get_hc_forms.R | 4 R/get_hc_search_drug.R | 4 R/medxr-package.R | 4 R/utils.R | 4 R/view_datasets_MedxR.R | 4 build/vignette.rds |binary inst/CITATION | 2 inst/doc/MedxR_vignette.R | 91 ++++++++---------- inst/doc/MedxR_vignette.Rmd | 22 +--- inst/doc/MedxR_vignette.html | 94 +++++++------------ inst/licenses/LICENSE | 2 inst/licenses/LICENSE.md | 2 man/get_hc_drug_by_din.Rd | 9 + tests/testthat/test-ATC_code_tbl_df.R | 4 tests/testthat/test-BCG_vaccine_df.R | 4 tests/testthat/test-aspirin_infarction_df.R | 4 tests/testthat/test-binding_df.R | 4 tests/testthat/test-caffeine_matrix.R | 4 tests/testthat/test-copd_drug_therapy_df.R | 4 tests/testthat/test-dosage_tbl_df.R | 4 tests/testthat/test-drug_prices_tbl_df.R | 4 tests/testthat/test-drugsmisuse_tbl_df.R | 4 tests/testthat/test-get_fda_adverse_events.R | 4 tests/testthat/test-get_fda_drug_labels.R | 4 tests/testthat/test-get_fda_drugs_approved.R | 4 tests/testthat/test-get_fda_ndc_directory.R | 4 tests/testthat/test-get_hc_active_ingredients.R | 4 tests/testthat/test-get_hc_companies.R | 4 tests/testthat/test-get_hc_din.R | 4 tests/testthat/test-get_hc_drug_by_din.R | 70 +++++++++++++- tests/testthat/test-get_hc_drug_products.R | 4 tests/testthat/test-get_hc_forms.R | 4 tests/testthat/test-get_hc_search_drug.R | 4 tests/testthat/test-histamine_matrix.R | 4 tests/testthat/test-naoh_digest_df.R | 4 tests/testthat/test-oilvitaminA_df.R | 4 tests/testthat/test-oral_anticoagulants_df.R | 4 tests/testthat/test-parkinsons_list.R | 4 tests/testthat/test-pharmacy_tbl_df.R | 4 tests/testthat/test-placebos_df.R | 4 tests/testthat/test-products_drug_tbl_df.R | 4 tests/testthat/test-ratliver_df.R | 4 tests/testthat/test-reactions_drug_tbl_df.R | 4 tests/testthat/test-view_datasets_MedxR.R | 4 vignettes/MedxR_vignette.Rmd | 22 +--- 59 files changed, 379 insertions(+), 306 deletions(-)
Title: Model and Analyse Interval Data
Description: Implements methodologies for modelling interval data by Normal
and Skew-Normal distributions, considering appropriate parameterizations of
the variance-covariance matrix that takes into account the intrinsic nature of
interval data, and lead to four different possible configuration structures.
The Skew-Normal parameters can be estimated by maximum likelihood, while Normal
parameters may be estimated by maximum likelihood or robust trimmed maximum
likelihood methods.
Author: Pedro Duarte Silva [aut, cre],
Paula Brito [aut]
Maintainer: Pedro Duarte Silva <psilva@ucp.pt>
Diff between MAINT.Data versions 2.7.3 dated 2026-01-08 and 2.7.4 dated 2026-01-14
CHANGELOG | 4 ++-- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/fasttle.R | 1 + man/MAINT.Data-package.Rd | 4 ++-- 5 files changed, 13 insertions(+), 12 deletions(-)
Title: Block Forests: Random Forests for Blocks of Clinical and Omics
Covariate Data
Description: A random forest variant 'block forest' ('BlockForest') tailored to the
prediction of binary, survival and continuous outcomes using block-structured
covariate data, for example, clinical covariates plus measurements of a certain
omics data type or multi-omics data, that is, data for which measurements of
different types of omics data and/or clinical data for each patient exist. Examples
of different omics data types include gene expression measurements, mutation data
and copy number variation measurements.
Block forest are presented in Hornung & Wright (2019). The package includes four
other random forest variants for multi-omics data: 'RandomBlock', 'BlockVarSel',
'VarProb', and 'SplitWeights'. These were also considered in Hornung & Wright (2019),
but performed worse than block forest in their comparison study based on 20 real
multi-omics data sets. Therefore, we recommend to use block forest ('BlockForest')
in applications. The other random forest variants can, however, be c [...truncated...]
Author: Marvin N. Wright [aut, cre],
Roman Hornung [aut]
Maintainer: Marvin N. Wright <cran@wrig.de>
Diff between blockForest versions 0.2.6 dated 2023-03-31 and 0.2.7 dated 2026-01-14
DESCRIPTION | 21 +++++++++++++-------- MD5 | 14 +++++++------- R/blockForest.R | 5 ++++- R/predict.R | 2 +- build/partial.rdb |binary man/blockForest.Rd | 3 +++ src/utility.h | 8 ++++---- tests/testthat.R | 2 +- 8 files changed, 33 insertions(+), 22 deletions(-)
Title: A Simple S3 Class for Representing Vectors of Binary Data
('BLOBS')
Description: R's raw vector is useful for storing a single binary object.
What if you want to put a vector of them in a data frame? The 'blob'
package provides the blob object, a list of raw vectors, suitable for
use as a column in data frame.
Author: Hadley Wickham [aut],
Kirill Mueller [cre],
RStudio [cph, fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between blob versions 1.2.4 dated 2023-03-17 and 1.3.0 dated 2026-01-14
DESCRIPTION | 11 ++-- MD5 | 32 ++++++------ NEWS.md | 15 +++++ R/blob-package.R |only R/blob.R | 5 - R/cast.R | 4 + R/coerce.R | 4 + R/compat-lifecycle.R | 41 +++++++++------ R/format.R | 12 +++- R/util.R | 6 +- README.md | 78 +++++++++++++++++------------ man/blob-package.Rd |only tests/testthat.R | 8 +++ tests/testthat/test-accessors.R | 98 +++++++++++++++++++++++++++++++++---- tests/testthat/test-cast.R | 12 +++- tests/testthat/test-construction.R | 2 tests/testthat/test-format.R | 2 tests/testthat/test-missing.R | 2 18 files changed, 232 insertions(+), 100 deletions(-)
More information about bayesDiagnostics at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-19 4.2.0
2020-06-02 4.1.3
2019-10-11 4.1.0
2019-06-28 4.0.6
2019-04-18 4.0.0
2018-02-20 3.3.0
2017-04-29 3.2.0
2016-09-16 3.1.0
2016-04-01 3.0.0
2015-05-31 2.2.0
2015-02-05 2.1.1
2015-01-12 2.1.0
Title: Causal Analysis of Observational Time-to-Event Data
Description: Implements target trial emulation methods to apply randomized
clinical trial design and analysis in an observational setting. Using
marginal structural models, it can estimate intention-to-treat and
per-protocol effects in emulated trials using electronic health
records. A description and application of the method can be found in
Danaei et al (2013) <doi:10.1177/0962280211403603>.
Author: Isaac Gravestock [aut, cre] ,
Li Su [aut],
Roonak Rezvani [aut] ,
Julia Moesch [aut],
Medical Research Council [fnd],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Isaac Gravestock <isaac.gravestock@roche.com>
Diff between TrialEmulation versions 0.0.4.8 dated 2025-11-19 and 0.0.4.9 dated 2026-01-14
DESCRIPTION | 8 - MD5 | 36 +++--- NAMESPACE | 1 NEWS.md | 4 R/initiators.R | 9 - R/lr_utils.R | 13 -- build/vignette.rds |binary inst/doc/Getting-Started.html | 188 ++++++++++++++++----------------- inst/doc/new-interface.Rmd | 4 inst/doc/new-interface.html | 17 +- man/data_preparation.Rd | 8 - man/initiators.Rd | 8 - man/trial_msm.Rd | 8 - tests/testthat/_snaps/data_utils.md | 34 +---- tests/testthat/test-data_preparation.R | 3 tests/testthat/test-data_utils.R | 3 tests/testthat/test-lr_utils.R | 26 ---- tests/testthat/test-modelling.R | 32 +---- vignettes/new-interface.Rmd | 4 19 files changed, 165 insertions(+), 241 deletions(-)
More information about TrialEmulation at CRAN
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Title: Efficient Implementation of K-Means++ Algorithm
Description: Efficient implementation of K-Means++ algorithm. For more
information see (1) "kmeans++ the advantages of the k-means++
algorithm" by David Arthur and Sergei Vassilvitskii (2007),
Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete
algorithms, Society for Industrial and Applied Mathematics,
Philadelphia, PA, USA, pp. 1027-1035, and (2) "The Effectiveness of
Lloyd-Type Methods for the k-Means Problem" by Rafail Ostrovsky, Yuval
Rabani, Leonard J. Schulman and Chaitanya Swamy
<doi:10.1145/2395116.2395117>.
Author: Aviezer Lifshitz [aut, cre],
Amos Tanay [aut],
Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between tglkmeans versions 0.5.5 dated 2024-05-15 and 0.5.8 dated 2026-01-14
tglkmeans-0.5.5/tglkmeans/src/Makevars |only tglkmeans-0.5.8/tglkmeans/DESCRIPTION | 15 tglkmeans-0.5.8/tglkmeans/MD5 | 25 tglkmeans-0.5.8/tglkmeans/NEWS.md | 12 tglkmeans-0.5.8/tglkmeans/R/TGL_kmeans.R | 11 tglkmeans-0.5.8/tglkmeans/R/intra_clustering.R | 30 - tglkmeans-0.5.8/tglkmeans/R/zzz.R | 4 tglkmeans-0.5.8/tglkmeans/build/partial.rdb |binary tglkmeans-0.5.8/tglkmeans/build/vignette.rds |binary tglkmeans-0.5.8/tglkmeans/configure |only tglkmeans-0.5.8/tglkmeans/inst/doc/usage.html | 338 ++++++------- tglkmeans-0.5.8/tglkmeans/man/TGL_kmeans.Rd | 3 tglkmeans-0.5.8/tglkmeans/man/TGL_kmeans_tidy.Rd | 3 tglkmeans-0.5.8/tglkmeans/src/Makevars.in |only tglkmeans-0.5.8/tglkmeans/tests/testthat/test-clustering.R | 21 15 files changed, 246 insertions(+), 216 deletions(-)
Title: Integration Unit Tests for Pharmacoepidemiological Studies
Description: An R interface to load testing data in the 'OMOP' Common Data Model ('CDM'). An input file, csv or xlsx, can be converted to a 'CDMConnector' object. This object can be used to execute and test studies that use the 'CDM' <https://www.ohdsi.org/data-standardization/>.
Author: Cesar Barboza [aut] ,
Ioanna Nika [aut],
Ger Inberg [aut, cre] ,
Adam Black [aut]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between TestGenerator versions 0.4.0 dated 2025-05-27 and 0.5.0 dated 2026-01-14
DESCRIPTION | 14 MD5 | 15 NEWS.md | 4 R/download.R | 2 R/patients.R | 49 +- inst/cdmTableSpecifications/emptycdm_5.4/Archive.zip |only inst/testCases/test.json | 344 ------------------- man/checkTablesColumns.Rd |only tests/testthat/test-patients.R | 24 + tests/testthat/test_cdm_data_uppercase.xlsx |only 10 files changed, 79 insertions(+), 373 deletions(-)
Title: Accessing and Validating Marine Environmental Data from 'SHARK'
and Related Databases
Description: Provides functions to retrieve, process, analyze, and
quality-control marine physical, chemical, and biological data. The
main focus is on Swedish monitoring data available through the 'SHARK'
database <https://shark.smhi.se/en/>, with additional API support for 'Nordic
Microalgae' <https://nordicmicroalgae.org/>, 'Dyntaxa'
<https://artfakta.se/>, World Register of Marine Species ('WoRMS') <https://www.marinespecies.org>,
'AlgaeBase' <https://www.algaebase.org>, OBIS 'xylookup' web service
<https://iobis.github.io/xylookup/> and Intergovernmental Oceanographic Commission (IOC) -
UNESCO databases on harmful algae <https://www.marinespecies.org/hab/> and toxins
<https://toxins.hais.ioc-unesco.org/>.
Author: Markus Lindh [aut] ,
Anders Torstensson [aut, cre] ,
Mikael Hedblom [ctb] ,
Bengt Karlson [ctb] ,
SHARK [cph],
SBDI [fnd]
Maintainer: Anders Torstensson <anders.torstensson@smhi.se>
Diff between SHARK4R versions 1.0.2 dated 2025-12-12 and 1.0.3 dated 2026-01-14
SHARK4R-1.0.2/SHARK4R/inst/shiny/shark-qc/rsconnect |only SHARK4R-1.0.3/SHARK4R/DESCRIPTION | 6 SHARK4R-1.0.3/SHARK4R/LICENSE | 4 SHARK4R-1.0.3/SHARK4R/LICENSE.note | 70 SHARK4R-1.0.3/SHARK4R/MD5 | 509 - SHARK4R-1.0.3/SHARK4R/NAMESPACE | 2 SHARK4R-1.0.3/SHARK4R/NEWS.md | 284 SHARK4R-1.0.3/SHARK4R/R/SHARK4R-package.R | 248 SHARK4R-1.0.3/SHARK4R/R/algaebase_api_functions.R | 2257 ++--- SHARK4R-1.0.3/SHARK4R/R/check_codes.R | 324 SHARK4R-1.0.3/SHARK4R/R/check_depth.R | 530 - SHARK4R-1.0.3/SHARK4R/R/check_fields.R | 2072 ++--- SHARK4R-1.0.3/SHARK4R/R/check_logical.R | 1468 +-- SHARK4R-1.0.3/SHARK4R/R/check_onland.R | 374 SHARK4R-1.0.3/SHARK4R/R/check_outliers.R | 1434 +-- SHARK4R-1.0.3/SHARK4R/R/check_stations.R | 1018 +- SHARK4R-1.0.3/SHARK4R/R/defunct.R | 248 SHARK4R-1.0.3/SHARK4R/R/dyntaxa_api_functions.R | 3930 +++++----- SHARK4R-1.0.3/SHARK4R/R/hab_api_functions.R | 539 - SHARK4R-1.0.3/SHARK4R/R/iRfcb_functions.R | 403 - SHARK4R-1.0.3/SHARK4R/R/ifcb_is_near_land.R | 146 SHARK4R-1.0.3/SHARK4R/R/ifcb_which_basin.R | 100 SHARK4R-1.0.3/SHARK4R/R/nua_api_functions.R | 764 - SHARK4R-1.0.3/SHARK4R/R/plankton_toolbox.R | 424 - SHARK4R-1.0.3/SHARK4R/R/plot_map_leaflet.R | 174 SHARK4R-1.0.3/SHARK4R/R/read_delivery_template.R | 566 - SHARK4R-1.0.3/SHARK4R/R/run_qc_app.R | 130 SHARK4R-1.0.3/SHARK4R/R/scatterplot.R | 388 SHARK4R-1.0.3/SHARK4R/R/shark_api_functions.R | 2306 ++--- SHARK4R-1.0.3/SHARK4R/R/shark_read.R | 612 - SHARK4R-1.0.3/SHARK4R/R/util.R | 1356 +-- SHARK4R-1.0.3/SHARK4R/R/worms_api_functions.R | 2666 +++--- SHARK4R-1.0.3/SHARK4R/R/xylookup.R | 290 SHARK4R-1.0.3/SHARK4R/R/zzz.R | 710 - SHARK4R-1.0.3/SHARK4R/README.md | 144 SHARK4R-1.0.3/SHARK4R/build/vignette.rds |binary SHARK4R-1.0.3/SHARK4R/inst/CITATION | 34 SHARK4R-1.0.3/SHARK4R/inst/WORDLIST | 317 SHARK4R-1.0.3/SHARK4R/inst/doc/quality_control.R | 223 SHARK4R-1.0.3/SHARK4R/inst/doc/quality_control.Rmd | 556 - SHARK4R-1.0.3/SHARK4R/inst/doc/quality_control.html | 1398 +-- SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_hab_data.R | 69 SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_hab_data.Rmd | 162 SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_hab_data.html | 980 +- SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_nordic_microalgae_data.R | 129 SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_nordic_microalgae_data.Rmd | 260 SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_nordic_microalgae_data.html | 1174 +- SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_shark_data.R | 107 SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_shark_data.Rmd | 200 SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_shark_data.html | 1009 +- SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_worms_data.R | 342 SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_worms_data.Rmd | 472 - SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_worms_data.html | 1348 +-- SHARK4R-1.0.3/SHARK4R/inst/shiny/shark-qc/global.R | 28 SHARK4R-1.0.3/SHARK4R/inst/shiny/shark-qc/helpers.R | 52 SHARK4R-1.0.3/SHARK4R/inst/shiny/shark-qc/report.Rmd | 484 - SHARK4R-1.0.3/SHARK4R/inst/shiny/shark-qc/server.R | 1802 ++-- SHARK4R-1.0.3/SHARK4R/inst/shiny/shark-qc/ui.R | 660 - SHARK4R-1.0.3/SHARK4R/man/SHARK4R-package.Rd | 78 SHARK4R-1.0.3/SHARK4R/man/add_worms_taxonomy.Rd | 118 SHARK4R-1.0.3/SHARK4R/man/assign_phytoplankton_group.Rd | 222 SHARK4R-1.0.3/SHARK4R/man/check_Bacterioplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_Chlorophyll.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_Epibenthos.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_EpibenthosDropvideo.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_GreySeal.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_HarbourPorpoise.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_HarbourSeal.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_PhysicalChemical.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_Phytoplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_Picoplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_PrimaryProduction.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_RingedSeal.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_SealPathology.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_Sedimentation.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_Zoobenthos.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_Zooplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_bacterial_carbon.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_bacterial_concentration.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_bacterial_production.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_chlorophyll_conc.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_code_proj.Rd | 62 SHARK4R-1.0.3/SHARK4R/man/check_codes.Rd | 110 SHARK4R-1.0.3/SHARK4R/man/check_datatype.Rd | 98 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Bacterioplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Chlorophyll.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Epibenthos.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_EpibenthosDropvideo.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_GreySeal.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_HarbourPorpoise.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_HarbourSeal.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_PhysicalChemical.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Phytoplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Picoplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_PrimaryProduction.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_RingedSeal.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_SealPathology.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Sedimentation.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Zoobenthos.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Zooplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_depth.Rd | 226 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_abundclass_logical.Rd | 56 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_counted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_cover_logical.Rd | 48 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_coverclass_logical.Rd | 56 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_coverpercent_logical.Rd | 56 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_dryweight.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_sedimentdepos_logical.Rd | 56 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_specdistr_maxdepth.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_specdistr_mindepth.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_totcover_logical.Rd | 56 SHARK4R-1.0.3/SHARK4R/man/check_fields.Rd | 284 SHARK4R-1.0.3/SHARK4R/man/check_greyseal_counted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_harbourseal_counted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_harbporp_positivemin.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_logical_parameter.Rd | 118 SHARK4R-1.0.3/SHARK4R/man/check_nominal_station.Rd | 86 SHARK4R-1.0.3/SHARK4R/man/check_onland.Rd | 184 SHARK4R-1.0.3/SHARK4R/man/check_outliers.Rd | 236 SHARK4R-1.0.3/SHARK4R/man/check_parameter_rules.Rd | 154 SHARK4R-1.0.3/SHARK4R/man/check_phytoplankton_abund.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_phytoplankton_biovol.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_phytoplankton_carbon.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_phytoplankton_counted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_picoplankton_abundance.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_picoplankton_biovol.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_picoplankton_carbon.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_picoplankton_counted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_primaryproduction_carbonprod.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_primaryproduction_carbonprod_hour.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_primaryproduction_carbonprodlight.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_ringedseal_calccounted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_setup.Rd | 100 SHARK4R-1.0.3/SHARK4R/man/check_station_distance.Rd | 216 SHARK4R-1.0.3/SHARK4R/man/check_value_logical.Rd | 80 SHARK4R-1.0.3/SHARK4R/man/check_zero_positions.Rd | 106 SHARK4R-1.0.3/SHARK4R/man/check_zero_value.Rd | 74 SHARK4R-1.0.3/SHARK4R/man/check_zoobenthos_BQIm.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zoobenthos_BQIm_logical.Rd | 48 SHARK4R-1.0.3/SHARK4R/man/check_zoobenthos_abund.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zoobenthos_counted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zoobenthos_wetweight.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zoobenthos_wetweight_logical.Rd | 56 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_abund.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_carbon.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_counted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_length_mean.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_length_median.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_wetweight.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_wetweight_area.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_wetweight_volume.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/clean_shark4r_cache.Rd | 100 SHARK4R-1.0.3/SHARK4R/man/construct_dyntaxa_table.Rd | 192 SHARK4R-1.0.3/SHARK4R/man/convert_ddmm_to_dd.Rd | 74 SHARK4R-1.0.3/SHARK4R/man/defunct.Rd | 36 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-archived.svg | 42 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-defunct.svg | 42 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-deprecated.svg | 42 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-experimental.svg | 42 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-maturing.svg | 42 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-questioning.svg | 42 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-soft-deprecated.svg | 42 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-stable.svg | 58 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-superseded.svg | 42 SHARK4R-1.0.3/SHARK4R/man/find_required_fields.Rd | 140 SHARK4R-1.0.3/SHARK4R/man/get_algaebase_genus.Rd | 168 SHARK4R-1.0.3/SHARK4R/man/get_algaebase_species.Rd | 184 SHARK4R-1.0.3/SHARK4R/man/get_delivery_template.Rd | 176 SHARK4R-1.0.3/SHARK4R/man/get_dyntaxa_dwca.Rd | 146 SHARK4R-1.0.3/SHARK4R/man/get_dyntaxa_parent_ids.Rd | 124 SHARK4R-1.0.3/SHARK4R/man/get_dyntaxa_records.Rd | 114 SHARK4R-1.0.3/SHARK4R/man/get_hab_list.Rd | 184 SHARK4R-1.0.3/SHARK4R/man/get_nomp_list.Rd | 116 SHARK4R-1.0.3/SHARK4R/man/get_nua_external_links.Rd | 92 SHARK4R-1.0.3/SHARK4R/man/get_nua_harmfulness.Rd | 90 SHARK4R-1.0.3/SHARK4R/man/get_nua_media_links.Rd | 78 SHARK4R-1.0.3/SHARK4R/man/get_nua_taxa.Rd | 70 SHARK4R-1.0.3/SHARK4R/man/get_peg_list.Rd | 102 SHARK4R-1.0.3/SHARK4R/man/get_shark_codes.Rd | 106 SHARK4R-1.0.3/SHARK4R/man/get_shark_data.Rd | 462 - SHARK4R-1.0.3/SHARK4R/man/get_shark_datasets.Rd | 190 SHARK4R-1.0.3/SHARK4R/man/get_shark_options.Rd | 96 SHARK4R-1.0.3/SHARK4R/man/get_shark_statistics.Rd | 184 SHARK4R-1.0.3/SHARK4R/man/get_shark_table_counts.Rd | 292 SHARK4R-1.0.3/SHARK4R/man/get_toxin_list.Rd | 64 SHARK4R-1.0.3/SHARK4R/man/get_worms_classification.Rd | 164 SHARK4R-1.0.3/SHARK4R/man/get_worms_records.Rd | 106 SHARK4R-1.0.3/SHARK4R/man/get_worms_records_name.Rd | 122 SHARK4R-1.0.3/SHARK4R/man/get_worms_taxonomy_tree.Rd | 222 SHARK4R-1.0.3/SHARK4R/man/ifcb_is_near_land.Rd | 152 SHARK4R-1.0.3/SHARK4R/man/ifcb_which_basin.Rd | 104 SHARK4R-1.0.3/SHARK4R/man/is_in_dyntaxa.Rd | 154 SHARK4R-1.0.3/SHARK4R/man/load_shark4r_fields.Rd | 118 SHARK4R-1.0.3/SHARK4R/man/load_shark4r_stats.Rd | 94 SHARK4R-1.0.3/SHARK4R/man/load_station_bundle.Rd | 40 SHARK4R-1.0.3/SHARK4R/man/lookup_xy.Rd | 158 SHARK4R-1.0.3/SHARK4R/man/match_algaebase.Rd | 232 SHARK4R-1.0.3/SHARK4R/man/match_algaebase_genus.Rd | 158 SHARK4R-1.0.3/SHARK4R/man/match_algaebase_species.Rd | 174 SHARK4R-1.0.3/SHARK4R/man/match_algaebase_taxa.Rd | 228 SHARK4R-1.0.3/SHARK4R/man/match_dyntaxa.Rd | 80 SHARK4R-1.0.3/SHARK4R/man/match_dyntaxa_taxa.Rd | 160 SHARK4R-1.0.3/SHARK4R/man/match_station.Rd | 122 SHARK4R-1.0.3/SHARK4R/man/match_taxon_name.Rd | 170 SHARK4R-1.0.3/SHARK4R/man/match_worms_taxa.Rd | 162 SHARK4R-1.0.3/SHARK4R/man/match_wormstaxa.Rd | 54 SHARK4R-1.0.3/SHARK4R/man/nominal_station.Rd | 90 SHARK4R-1.0.3/SHARK4R/man/parse_scientific_names.Rd | 116 SHARK4R-1.0.3/SHARK4R/man/plot_map_leaflet.Rd | 106 SHARK4R-1.0.3/SHARK4R/man/plot_map_leaflet_deliv.Rd | 44 SHARK4R-1.0.3/SHARK4R/man/positions_are_near_land.Rd | 177 SHARK4R-1.0.3/SHARK4R/man/read_ptbx.Rd | 100 SHARK4R-1.0.3/SHARK4R/man/read_shark.Rd | 130 SHARK4R-1.0.3/SHARK4R/man/read_shark_deliv.Rd | 84 SHARK4R-1.0.3/SHARK4R/man/run_qc_app.Rd | 74 SHARK4R-1.0.3/SHARK4R/man/scatterplot.Rd | 166 SHARK4R-1.0.3/SHARK4R/man/shark_read.Rd | 78 SHARK4R-1.0.3/SHARK4R/man/shark_read_deliv.Rd | 50 SHARK4R-1.0.3/SHARK4R/man/shark_read_deliv_xls.Rd | 52 SHARK4R-1.0.3/SHARK4R/man/shark_read_zip.Rd | 76 SHARK4R-1.0.3/SHARK4R/man/translate_shark_datatype.Rd | 54 SHARK4R-1.0.3/SHARK4R/man/update_dyntaxa_taxonomy.Rd | 130 SHARK4R-1.0.3/SHARK4R/man/update_worms_taxonomy.Rd | 76 SHARK4R-1.0.3/SHARK4R/man/which_basin.Rd | 100 SHARK4R-1.0.3/SHARK4R/tests/spelling.R | 6 SHARK4R-1.0.3/SHARK4R/tests/testthat.R | 24 SHARK4R-1.0.3/SHARK4R/tests/testthat/helper.R | 316 SHARK4R-1.0.3/SHARK4R/tests/testthat/setup-cache.R | 4 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-algaebase_api_functions.R | 102 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-check_codes.R | 56 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-check_depth.R | 240 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-check_fields.R | 560 - SHARK4R-1.0.3/SHARK4R/tests/testthat/test-check_logical.R | 1350 +-- SHARK4R-1.0.3/SHARK4R/tests/testthat/test-check_onland.R | 154 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-check_outliers.R | 526 - SHARK4R-1.0.3/SHARK4R/tests/testthat/test-check_stations.R | 802 +- SHARK4R-1.0.3/SHARK4R/tests/testthat/test-defunct.R | 64 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-dyntaxa_api_functions.R | 446 - SHARK4R-1.0.3/SHARK4R/tests/testthat/test-hab_api_functions.R | 306 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-iRfcb_functions.R | 289 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-nua_api_functions.R | 92 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-plankton_toolbox.R | 378 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-plot_map_leaflet.R | 124 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-read_delivery_template.R | 134 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-run_qc_app.R | 32 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-scatterplot.R | 246 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-shark_api_functions.R | 514 - SHARK4R-1.0.3/SHARK4R/tests/testthat/test-shark_read.R | 292 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-util.R | 538 - SHARK4R-1.0.3/SHARK4R/tests/testthat/test-worms_api_functions.R | 482 - SHARK4R-1.0.3/SHARK4R/tests/testthat/test-xylookup.R | 246 SHARK4R-1.0.3/SHARK4R/vignettes/quality_control.Rmd | 556 - SHARK4R-1.0.3/SHARK4R/vignettes/retrieve_hab_data.Rmd | 162 SHARK4R-1.0.3/SHARK4R/vignettes/retrieve_nordic_microalgae_data.Rmd | 260 SHARK4R-1.0.3/SHARK4R/vignettes/retrieve_shark_data.Rmd | 200 SHARK4R-1.0.3/SHARK4R/vignettes/retrieve_worms_data.Rmd | 472 - 256 files changed, 31546 insertions(+), 31178 deletions(-)
Title: Ex Post Survey Data Harmonization
Description: Assist in reproducible retrospective (ex-post) harmonization
of data, particularly individual level survey data, by providing tools
for organizing metadata, standardizing the coding of variables, and
variable names and value labels, including missing values, and
documenting the data transformations, with the help of comprehensive
s3 classes.
Author: Daniel Antal [aut, cre] ,
Marta Kolczynska [ctb]
Maintainer: Daniel Antal <daniel.antal@dataobservatory.eu>
Diff between retroharmonize versions 0.2.0 dated 2021-11-02 and 0.2.7 dated 2026-01-14
retroharmonize-0.2.0/retroharmonize/R/document_waves.R |only retroharmonize-0.2.0/retroharmonize/R/harmonize_waves.R |only retroharmonize-0.2.0/retroharmonize/R/merge_waves.R |only retroharmonize-0.2.0/retroharmonize/R/subset_save_surveys.R |only retroharmonize-0.2.0/retroharmonize/R/subset_waves.R |only retroharmonize-0.2.0/retroharmonize/R/suggest_var_names.R |only retroharmonize-0.2.0/retroharmonize/inst/doc/arabbarometer.R |only retroharmonize-0.2.0/retroharmonize/inst/doc/arabbarometer.Rmd |only retroharmonize-0.2.0/retroharmonize/inst/doc/arabbarometer.html |only retroharmonize-0.2.0/retroharmonize/inst/doc/eurobarometer.R |only retroharmonize-0.2.0/retroharmonize/inst/doc/eurobarometer.Rmd |only retroharmonize-0.2.0/retroharmonize/inst/doc/eurobarometer.html |only retroharmonize-0.2.0/retroharmonize/man/as_factor.Rd |only retroharmonize-0.2.0/retroharmonize/man/document_waves.Rd |only retroharmonize-0.2.0/retroharmonize/man/figures/README-pressure-1.png |only retroharmonize-0.2.0/retroharmonize/man/harmonize_waves.Rd |only retroharmonize-0.2.0/retroharmonize/man/merge_waves.Rd |only retroharmonize-0.2.0/retroharmonize/man/subset_save_surveys.Rd |only retroharmonize-0.2.0/retroharmonize/man/subset_waves.Rd |only retroharmonize-0.2.0/retroharmonize/man/suggest_permanent_names.Rd |only retroharmonize-0.2.0/retroharmonize/man/suggest_var_names.Rd |only retroharmonize-0.2.0/retroharmonize/tests/testthat/test-document_waves.R |only retroharmonize-0.2.0/retroharmonize/tests/testthat/test-harmonize_var_names__subset_waves.R |only retroharmonize-0.2.0/retroharmonize/tests/testthat/test-harmonize_waves.R |only retroharmonize-0.2.0/retroharmonize/tests/testthat/test-merge_waves.R |only retroharmonize-0.2.0/retroharmonize/tests/testthat/test-suggest_var_names.R |only retroharmonize-0.2.0/retroharmonize/vignettes/arabbarometer.Rmd |only retroharmonize-0.2.0/retroharmonize/vignettes/eurobarometer.Rmd |only retroharmonize-0.2.7/retroharmonize/DESCRIPTION | 58 retroharmonize-0.2.7/retroharmonize/MD5 | 274 +- retroharmonize-0.2.7/retroharmonize/NAMESPACE | 56 retroharmonize-0.2.7/retroharmonize/NEWS.md | 21 retroharmonize-0.2.7/retroharmonize/R/as_labelled_spss_survey.R | 30 retroharmonize-0.2.7/retroharmonize/R/assertions.R | 178 - retroharmonize-0.2.7/retroharmonize/R/collect_val_labels.R | 43 retroharmonize-0.2.7/retroharmonize/R/concatenate.R | 126 - retroharmonize-0.2.7/retroharmonize/R/create_codebook.R | 422 ++- retroharmonize-0.2.7/retroharmonize/R/crosswalk.R |only retroharmonize-0.2.7/retroharmonize/R/document_survey_item.R | 115 retroharmonize-0.2.7/retroharmonize/R/document_surveys.R |only retroharmonize-0.2.7/retroharmonize/R/harmonize_na_values.R | 147 - retroharmonize-0.2.7/retroharmonize/R/harmonize_survey_values.R |only retroharmonize-0.2.7/retroharmonize/R/harmonize_survey_variables.R |only retroharmonize-0.2.7/retroharmonize/R/harmonize_values.R | 436 +-- retroharmonize-0.2.7/retroharmonize/R/harmonize_var_names.R | 105 retroharmonize-0.2.7/retroharmonize/R/label_harmonize.R | 151 - retroharmonize-0.2.7/retroharmonize/R/labelled_spss_survey.R | 1250 +++++++--- retroharmonize-0.2.7/retroharmonize/R/labelled_spss_survey_arithmetic.R |only retroharmonize-0.2.7/retroharmonize/R/labelled_spss_survey_coercion.R |only retroharmonize-0.2.7/retroharmonize/R/merge_surveys.R |only retroharmonize-0.2.7/retroharmonize/R/metadata_create.R | 356 +- retroharmonize-0.2.7/retroharmonize/R/na_range_to_values.R | 114 retroharmonize-0.2.7/retroharmonize/R/pull_survey.R | 66 retroharmonize-0.2.7/retroharmonize/R/read_csv.R |only retroharmonize-0.2.7/retroharmonize/R/read_dta.R | 177 - retroharmonize-0.2.7/retroharmonize/R/read_rds.R | 101 retroharmonize-0.2.7/retroharmonize/R/read_spss.R | 206 - retroharmonize-0.2.7/retroharmonize/R/read_surveys.R | 223 + retroharmonize-0.2.7/retroharmonize/R/retroharmonize-package.R |only retroharmonize-0.2.7/retroharmonize/R/retroharmonize.R | 80 retroharmonize-0.2.7/retroharmonize/R/subset_surveys.R |only retroharmonize-0.2.7/retroharmonize/R/survey.R | 169 - retroharmonize-0.2.7/retroharmonize/R/survey_df.R |only retroharmonize-0.2.7/retroharmonize/R/utils-here.R | 20 retroharmonize-0.2.7/retroharmonize/R/utils-read_csv.R |only retroharmonize-0.2.7/retroharmonize/R/utils.R | 42 retroharmonize-0.2.7/retroharmonize/R/valid_file_info.R |only retroharmonize-0.2.7/retroharmonize/README.md | 271 +- retroharmonize-0.2.7/retroharmonize/build/vignette.rds |binary retroharmonize-0.2.7/retroharmonize/inst/WORDLIST | 76 retroharmonize-0.2.7/retroharmonize/inst/doc/afrobarometer.R | 193 - retroharmonize-0.2.7/retroharmonize/inst/doc/afrobarometer.Rmd | 159 - retroharmonize-0.2.7/retroharmonize/inst/doc/afrobarometer.html | 997 +++++-- retroharmonize-0.2.7/retroharmonize/inst/doc/codelist.R |only retroharmonize-0.2.7/retroharmonize/inst/doc/codelist.Rmd |only retroharmonize-0.2.7/retroharmonize/inst/doc/codelist.html |only retroharmonize-0.2.7/retroharmonize/inst/doc/concept.R |only retroharmonize-0.2.7/retroharmonize/inst/doc/concept.Rmd |only retroharmonize-0.2.7/retroharmonize/inst/doc/concept.html |only retroharmonize-0.2.7/retroharmonize/inst/doc/crosswalk.R |only retroharmonize-0.2.7/retroharmonize/inst/doc/crosswalk.Rmd |only retroharmonize-0.2.7/retroharmonize/inst/doc/crosswalk.html |only retroharmonize-0.2.7/retroharmonize/inst/doc/documentation.R |only retroharmonize-0.2.7/retroharmonize/inst/doc/documentation.Rmd |only retroharmonize-0.2.7/retroharmonize/inst/doc/documentation.html |only retroharmonize-0.2.7/retroharmonize/inst/doc/harmonize_labels.R | 194 - retroharmonize-0.2.7/retroharmonize/inst/doc/harmonize_labels.Rmd | 198 - retroharmonize-0.2.7/retroharmonize/inst/doc/harmonize_labels.html | 919 ++++--- retroharmonize-0.2.7/retroharmonize/inst/doc/labelled_spss_survey.R | 55 retroharmonize-0.2.7/retroharmonize/inst/doc/labelled_spss_survey.Rmd | 74 retroharmonize-0.2.7/retroharmonize/inst/doc/labelled_spss_survey.html | 662 +++-- retroharmonize-0.2.7/retroharmonize/inst/doc/metadata.R |only retroharmonize-0.2.7/retroharmonize/inst/doc/metadata.Rmd |only retroharmonize-0.2.7/retroharmonize/inst/doc/metadata.html |only retroharmonize-0.2.7/retroharmonize/inst/doc/retroharmonize.R |only retroharmonize-0.2.7/retroharmonize/inst/doc/retroharmonize.Rmd |only retroharmonize-0.2.7/retroharmonize/inst/doc/retroharmonize.html |only retroharmonize-0.2.7/retroharmonize/inst/doc/survey_harmonization.R |only retroharmonize-0.2.7/retroharmonize/inst/doc/survey_harmonization.Rmd |only retroharmonize-0.2.7/retroharmonize/inst/doc/survey_harmonization.html |only retroharmonize-0.2.7/retroharmonize/inst/examples/ZA5913.rds |binary retroharmonize-0.2.7/retroharmonize/inst/examples/ZA6863.rds |binary retroharmonize-0.2.7/retroharmonize/inst/examples/ZA7576.rds |binary retroharmonize-0.2.7/retroharmonize/man/as_labelled_spss_survey.Rd | 48 retroharmonize-0.2.7/retroharmonize/man/collect_val_labels.Rd | 88 retroharmonize-0.2.7/retroharmonize/man/concatenate.Rd | 96 retroharmonize-0.2.7/retroharmonize/man/convert_to_labelled_spss.Rd | 44 retroharmonize-0.2.7/retroharmonize/man/create_codebook.Rd | 148 - 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More information about retroharmonize at CRAN
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Title: Getting Bibliographic Records from 'OpenAlex' Database Using
'DSL' API
Description: A set of tools to extract bibliographic content from
'OpenAlex' database using API <https://docs.openalex.org>.
Author: Massimo Aria [aut, cre, cph] ,
Corrado Cuccurullo [ctb] ,
Trang Le [aut] ,
June Choe [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between openalexR versions 3.0.0 dated 2026-01-10 and 3.0.1 dated 2026-01-14
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 3 +++ R/oa_fetch.R | 2 ++ R/utils.R | 2 +- README.md | 10 +++++----- man/oa_random.Rd | 2 ++ tests/testthat/test-oa_fetch.R | 2 ++ 8 files changed, 25 insertions(+), 16 deletions(-)
Title: Statistical Analysis of Monthly Background Checks of Gun
Purchases
Description: Statistical analysis of monthly background checks of gun purchases for the New York Times
story "What Drives Gun Sales: Terrorism, Obama and Calls for Restrictions" at
<https://www.nytimes.com/interactive/2015/12/10/us/gun-sales-terrorism-obama-restrictions.html>
is provided.
Author: Gregor Aisch [aut],
Josh Keller [aut],
Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between gunsales versions 0.1.2 dated 2017-01-30 and 0.1.3 dated 2026-01-14
DESCRIPTION | 29 ++- MD5 | 28 +-- NAMESPACE | 3 R/functions.R | 2 README.md | 15 + build/vignette.rds |binary data/alldata.RData |binary data/poptotal.RData |binary inst/doc/gunsales.R | 20 +- inst/doc/gunsales.Rmd | 6 inst/doc/gunsales.html | 394 ++++++++++++++++++++++++++++++++++++++++++------- man/analysis.Rd | 2 man/ggplot_gunsales.Rd | 2 man/plot_gunsales.Rd | 2 vignettes/gunsales.Rmd | 6 15 files changed, 404 insertions(+), 105 deletions(-)
Title: Counterfactual Explanations
Description: Modular and unified R6-based interface for counterfactual explanation methods.
The following methods are currently implemented: Burghmans et al. (2022) <doi:10.48550/arXiv.2104.07411>,
Dandl et al. (2020) <doi:10.1007/978-3-030-58112-1_31> and Wexler et al. (2019) <doi:10.1109/TVCG.2019.2934619>.
Optional extensions allow these methods to be applied to a variety of models and use cases.
Once generated, the counterfactuals can be analyzed and visualized by provided functionalities.
The package is described in detail in Dandl et al. (2025) <doi:10.18637/jss.v115.i09>.
Author: Susanne Dandl [aut, cre] ,
Andreas Hofheinz [aut],
Martin Binder [ctb],
Giuseppe Casalicchio [ctb]
Maintainer: Susanne Dandl <dandls.datascience@gmail.com>
Diff between counterfactuals versions 0.1.6 dated 2024-10-17 and 1.0.0 dated 2026-01-14
DESCRIPTION | 12 ++++---- MD5 | 48 ++++++++++++++++---------------- NEWS.md | 5 +++ R/CounterfactualMethod.R | 6 +++- R/Counterfactuals.R | 3 +- R/NICEClassif.R | 2 - R/NICERegr.R | 2 - R/WhatIfClassif.R | 6 ++-- R/WhatIfRegr.R | 6 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 32 +++++++++++++-------- inst/doc/how-to-add-new-cf-methods.html | 23 ++++++++------- inst/doc/introduction.html | 28 ++++++++++-------- inst/doc/other_models.html | 44 +++++++++++++++++------------ man/CounterfactualMethod.Rd | 3 ++ man/Counterfactuals.Rd | 4 ++ man/MOCClassif.Rd | 17 +++++------ man/MOCRegr.Rd | 17 +++++------ man/NICEClassif.Rd | 2 - man/NICERegr.Rd | 2 - man/RandomSearchClassif.Rd | 18 ++++++------ man/RandomSearchRegr.Rd | 18 ++++++------ man/WhatIfClassif.Rd | 6 ++-- man/WhatIfRegr.Rd | 6 ++-- 25 files changed, 176 insertions(+), 134 deletions(-)
More information about counterfactuals at CRAN
Permanent link
Title: Utility Functions and Development Tools for the Admiral Package
Family
Description: Utility functions to check data, variables and conditions for
functions used in 'admiral' and 'admiral' extension packages.
Additional utility helper functions to assist developers with
maintaining documentation, testing and general upkeep of 'admiral' and
'admiral' extension packages.
Author: Ben Straub [aut, cre],
Stefan Bundfuss [aut] ,
Arianna Cascone [aut] ,
Jeffrey Dickinson [aut],
Ross Farrugia [aut],
Fanny Gautier [aut],
Edoardo Mancini [aut] ,
Gordon Miller [aut],
Daniel Sjoberg [aut] ,
Stefan Thoma [aut] ,
F. Hoffmann-La Roche AG [...truncated...]
Maintainer: Ben Straub <ben.x.straub@gsk.com>
Diff between admiraldev versions 1.3.1 dated 2025-06-25 and 1.4.0 dated 2026-01-14
admiraldev-1.3.1/admiraldev/R/joins.R |only admiraldev-1.3.1/admiraldev/man/joins.Rd |only admiraldev-1.4.0/admiraldev/DESCRIPTION | 15 admiraldev-1.4.0/admiraldev/MD5 | 167 +-- admiraldev-1.4.0/admiraldev/NAMESPACE | 3 admiraldev-1.4.0/admiraldev/NEWS.md | 70 + admiraldev-1.4.0/admiraldev/R/assertions.R | 22 admiraldev-1.4.0/admiraldev/R/compat_friendly_type.R | 172 --- admiraldev-1.4.0/admiraldev/R/dev_utilities.R | 68 - admiraldev-1.4.0/admiraldev/R/is.R | 2 admiraldev-1.4.0/admiraldev/R/lifecycle_admiral.R | 17 admiraldev-1.4.0/admiraldev/R/process_set_values_to.R | 2 admiraldev-1.4.0/admiraldev/R/quo.R | 2 admiraldev-1.4.0/admiraldev/R/quote.R | 29 admiraldev-1.4.0/admiraldev/R/roclet_rdx.R | 13 admiraldev-1.4.0/admiraldev/R/warnings.R | 2 admiraldev-1.4.0/admiraldev/R/what.R | 39 admiraldev-1.4.0/admiraldev/README.md | 24 admiraldev-1.4.0/admiraldev/build/vignette.rds |binary admiraldev-1.4.0/admiraldev/inst/WORDLIST | 25 admiraldev-1.4.0/admiraldev/inst/doc/package_extensions.html | 8 admiraldev-1.4.0/admiraldev/inst/doc/rcmd_issues.html | 2 admiraldev-1.4.0/admiraldev/inst/doc/writing_custom_examples.R |only admiraldev-1.4.0/admiraldev/inst/doc/writing_custom_examples.Rmd |only admiraldev-1.4.0/admiraldev/inst/doc/writing_custom_examples.html |only admiraldev-1.4.0/admiraldev/inst/lintr |only admiraldev-1.4.0/admiraldev/man/add_suffix_to_vars.Rd | 2 admiraldev-1.4.0/admiraldev/man/admiraldev-package.Rd | 1 admiraldev-1.4.0/admiraldev/man/arg_name.Rd | 18 admiraldev-1.4.0/admiraldev/man/assert_atomic_vector.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_character_scalar.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_character_vector.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_data_frame.Rd | 11 admiraldev-1.4.0/admiraldev/man/assert_date_vector.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_expr.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_expr_list.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_filter_cond.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_function.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_integer_scalar.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_list_element.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_list_of.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_logical_scalar.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_named.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_numeric_vector.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_one_to_one.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_param_does_not_exist.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_s3_class.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_same_type.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_symbol.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_unit.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_vars.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_varval_list.Rd | 2 admiraldev-1.4.0/admiraldev/man/backquote.Rd | 3 admiraldev-1.4.0/admiraldev/man/contains_vars.Rd | 6 admiraldev-1.4.0/admiraldev/man/convert_dtm_to_dtc.Rd | 6 admiraldev-1.4.0/admiraldev/man/dquote.Rd | 3 admiraldev-1.4.0/admiraldev/man/enumerate.Rd | 22 admiraldev-1.4.0/admiraldev/man/expr_c.Rd | 2 admiraldev-1.4.0/admiraldev/man/extract_vars.Rd | 6 admiraldev-1.4.0/admiraldev/man/figures/gsk_logo.png |only admiraldev-1.4.0/admiraldev/man/figures/roche_logo.png |only admiraldev-1.4.0/admiraldev/man/filter_if.Rd | 6 admiraldev-1.4.0/admiraldev/man/friendly_type_of.Rd | 18 admiraldev-1.4.0/admiraldev/man/get_constant_vars.Rd | 2 admiraldev-1.4.0/admiraldev/man/get_dataset.Rd | 2 admiraldev-1.4.0/admiraldev/man/get_duplicates.Rd | 2 admiraldev-1.4.0/admiraldev/man/get_source_vars.Rd | 2 admiraldev-1.4.0/admiraldev/man/grapes-notin-grapes.Rd | 6 admiraldev-1.4.0/admiraldev/man/grapes-or-grapes.Rd | 18 admiraldev-1.4.0/admiraldev/man/is_auto.Rd | 2 admiraldev-1.4.0/admiraldev/man/is_order_vars.Rd | 2 admiraldev-1.4.0/admiraldev/man/is_valid_dtc.Rd | 2 admiraldev-1.4.0/admiraldev/man/replace_symbol_in_expr.Rd | 2 admiraldev-1.4.0/admiraldev/man/replace_values_by_names.Rd | 2 admiraldev-1.4.0/admiraldev/man/squote.Rd | 5 admiraldev-1.4.0/admiraldev/man/valid_time_units.Rd | 18 admiraldev-1.4.0/admiraldev/man/vars2chr.Rd | 8 admiraldev-1.4.0/admiraldev/man/what_is_it.Rd | 20 admiraldev-1.4.0/admiraldev/tests/testthat/_snaps/assertions.md | 113 +- admiraldev-1.4.0/admiraldev/tests/testthat/_snaps/dev_utilities.md |only admiraldev-1.4.0/admiraldev/tests/testthat/_snaps/roclet_rdx/test_class.Rd |only admiraldev-1.4.0/admiraldev/tests/testthat/fixtures/test_class.R |only admiraldev-1.4.0/admiraldev/tests/testthat/test-assertions.R | 446 +++++----- admiraldev-1.4.0/admiraldev/tests/testthat/test-compat_friendly_type.R | 104 -- admiraldev-1.4.0/admiraldev/tests/testthat/test-demo_fun.R |only admiraldev-1.4.0/admiraldev/tests/testthat/test-dev_utilities.R | 62 + admiraldev-1.4.0/admiraldev/tests/testthat/test-is.R | 6 admiraldev-1.4.0/admiraldev/tests/testthat/test-quote.R | 12 admiraldev-1.4.0/admiraldev/tests/testthat/test-roclet_rdx.R | 54 - admiraldev-1.4.0/admiraldev/tests/testthat/test-what.R | 48 - admiraldev-1.4.0/admiraldev/vignettes/writing_custom_examples.Rmd |only 91 files changed, 851 insertions(+), 917 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-09 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-16 1.2.0
2020-01-11 1.1.0
2019-04-11 1.0.0
2018-06-26 0.8.4
2017-09-14 0.8.0
2016-11-09 0.7.8
2016-08-25 0.7.6
2016-08-17 0.7.4
2016-08-03 0.7.2
2016-07-25 0.7.0
2016-01-07 0.6.0
2015-07-02 0.5.0
2015-05-01 0.4.0
2015-01-29 0.3.0
Title: Snow Profile Analysis for Snowpack and Avalanche Research
Description: Analysis and plotting tools for snow profile data produced from manual snowpack
observations and physical snowpack models. The functions in this package support snowpack
and avalanche research by reading various formats of data (including CAAML, SMET,
generic csv, and outputs from the snow cover model SNOWPACK), manipulate the data, and
produce graphics such as stratigraphy and time series profiles. Package developed by
the Simon Fraser University Avalanche Research Program <http://www.avalancheresearch.ca>.
Graphics apply visualization concepts from Horton, Nowak, and Haegeli (2020,
<doi:10.5194/nhess-20-1557-2020>).
Author: Pascal Haegeli [aut, cre],
Simon Horton [aut],
Florian Herla [aut],
SFU Avalanche Research Program [fnd]
Maintainer: Pascal Haegeli <pascal_haegeli@sfu.ca>
Diff between sarp.snowprofile versions 1.3.2 dated 2023-03-08 and 1.4.1 dated 2026-01-14
DESCRIPTION | 10 MD5 | 272 - NAMESPACE | 154 NEWS.md | 147 R/assignDatetags.R |only R/char2numAspect.R | 68 R/char2numHHI.R | 134 R/computeRTA.R | 416 - R/computeSLAB.R | 150 R/computeTSA.R | 296 - R/data-SPgroup.R | 36 R/data-SPmalformatted.R | 28 R/data-SPpairs.R | 46 R/data-SPtimeline.R | 30 R/data-SPtimeline_3hourly.R |only R/data-grainDict.R | 36 R/data-swisscode.R | 32 R/deriveDatetag.R | 285 - R/export.snowprofileCsv.R | 216 R/findPWL.R | 498 +- R/getColoursDensity.R | 112 R/getColoursGrainSize.R | 116 R/getColoursGrainType.R | 64 R/getColoursHardness.R | 112 R/getColoursLWC.R | 112 R/getColoursPercentage.R | 104 R/getColoursSnowTemp.R | 116 R/getColoursStability.R | 164 R/globalData.R | 2 R/importRDefaultPackages.R | 20 R/labelPWL.R | 40 R/numberOfPWLsPerVerticalLevel.R | 86 R/plot.snowprofile.R | 436 - R/plot.snowprofileSet.R | 971 ++-- R/rbind.snowprofile.R | 72 R/rbind.snowprofileSet.R | 94 R/readSmet.R | 196 R/sarp.snowprofile-package.R | 16 R/scanProfileDates.R | 114 R/setColoursGrainType.R | 198 R/simplifyGtypes.R | 76 R/snowprofile.R | 1090 ++-- R/snowprofileCaaml.R | 790 +-- R/snowprofileCsv.R | 314 - R/snowprofileCsv_advanced.R | 306 - R/snowprofileInstabilitySigns.R | 220 R/snowprofileLayers.R | 960 ++-- R/snowprofilePrf.R | 340 - R/snowprofilePro.R | 524 +- R/snowprofileSet.R | 96 R/snowprofileSno.R | 138 R/snowprofileTests.R | 260 - R/summary.snowprofile.R | 136 R/summary.snowprofileSet.R | 94 R/unobservedBasalLayer.R | 130 R/utils.R | 32 R/writePro.R |only R/writeSmet.R | 134 README.md | 32 build/partial.rdb |binary build/vignette.rds |binary data/SPtimeline_3hourly.rda |only inst/doc/sarp.snowprofile.R | 110 inst/doc/sarp.snowprofile.Rmd | 312 - inst/doc/sarp.snowprofile.html | 1344 +++--- inst/extdata/example.caaml | 7606 +++++++++++++++++----------------- inst/extdata/example.prf | 116 inst/extdata/example.pro | 298 - inst/extdata/example.smet | 52 inst/extdata/example.sno | 578 +- inst/extdata/example2.caaml | 552 +- inst/extdata/example_adv.csv | 28 man/SPgroup.Rd | 52 man/SPmalformatted.Rd | 42 man/SPpairs.Rd | 62 man/SPtimeline.Rd | 52 man/SPtimeline_3hourly.Rd |only man/assignDatetags.Rd |only man/char2numAspect.Rd | 62 man/char2numHHI.Rd | 74 man/codes_pro.Rd |only man/computeRTA.Rd | 144 man/computeSLABrho.Rd | 40 man/computeSLABrhogs.Rd | 48 man/computeTSA.Rd | 124 man/deriveBDate.Rd |only man/deriveDatetag.Rd | 117 man/export.snowprofileCsv.Rd | 158 man/findPWL.Rd | 314 - man/format_snowprofileLayers.Rd | 70 man/getColoursDensity.Rd | 66 man/getColoursGrainSize.Rd | 68 man/getColoursGrainType.Rd | 76 man/getColoursHardness.Rd | 68 man/getColoursLWC.Rd | 66 man/getColoursPercentage.Rd | 96 man/getColoursSnowTemp.Rd | 68 man/getColoursStability.Rd | 100 man/grainDict.Rd | 48 man/guessDatetagsSimple.Rd |only man/hasUnobservedBasalLayer.Rd | 34 man/importRDefaultPackages.Rd | 22 man/insertUnobservedBasalLayer.Rd | 56 man/is.snowprofile.Rd | 34 man/is.snowprofileInstabilitySigns.Rd | 34 man/is.snowprofileLayers.Rd | 34 man/is.snowprofileSet.Rd | 34 man/is.snowprofileTests.Rd | 34 man/new_snowprofile.Rd | 152 man/numberOfPWLsPerVerticalLevel.Rd | 64 man/plot.snowprofile.Rd | 183 man/plot.snowprofileSet.Rd | 392 - man/print.snowprofile.Rd | 72 man/rbind.snowprofile.Rd | 70 man/rbind.snowprofileSet.Rd | 80 man/readSmet.Rd | 67 man/reformat_snowprofile.Rd | 98 man/sarp.snowprofile-package.Rd | 66 man/scanProfileDates.Rd | 70 man/sd_sample_uncorrected.Rd | 52 man/setColoursGrainType.Rd | 114 man/simplifyGtypes.Rd | 66 man/snowprofile.Rd | 208 man/snowprofileCaaml.Rd | 112 man/snowprofileCsv.Rd | 216 man/snowprofileCsv_advanced.Rd | 112 man/snowprofileInstabilitySigns.Rd | 118 man/snowprofileLayers.Rd | 394 - man/snowprofilePrf.Rd | 106 man/snowprofilePro.Rd | 142 man/snowprofileSet.Rd | 40 man/snowprofileSno.Rd | 84 man/snowprofileTests.Rd | 132 man/sub-.snowprofileSet.Rd | 38 man/summary.snowprofile.Rd | 84 man/summary.snowprofileSet.Rd | 96 man/swisscode.Rd | 44 man/validate_snowprofile.Rd | 120 man/validate_snowprofileLayers.Rd | 40 man/writePro.Rd |only man/writeSmet.Rd | 76 vignettes/sarp.snowprofile.Rmd | 312 - 142 files changed, 14643 insertions(+), 14341 deletions(-)
More information about sarp.snowprofile at CRAN
Permanent link
Title: Provides Access to Salem Witchcraft Data
Description: Data related to the Salem Witch Trials
Datasets and tutorials documenting the witch accusations and trials
centered around Salem, Massachusetts in 1692. Originally assembled by
Richard B. Latner of Tulane University for his website
<https://www2.tulane.edu/~salem/index.html>. The data sets include information
on 152 accused witches, members of the Salem Village Committee,
signatories of petitions related to the events, and tax data for
Salem Village.
Author: Elin Waring [aut, cre],
Richard Latner [aut]
Maintainer: Elin Waring <elin.waring@gmail.com>
This is a re-admission after prior archival of version 0.2.0 dated 2020-11-05
Diff between salem versions 0.2.0 dated 2020-11-05 and 1.0.1 dated 2026-01-14
salem |only 1 file changed
Title: Query 'SWI'-'Prolog' from R
Description: This R package connects to SWI-Prolog, <https://www.swi-prolog.org/>, so that R can send deterministic and non-deterministic queries to prolog (consult, query/submit, once, findall).
Author: Matthias Gondan [aut, com, cre] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
This is a re-admission after prior archival of version 0.9.23 dated 2025-05-19
Diff between rolog versions 0.9.23 dated 2025-05-19 and 0.9.24 dated 2026-01-14
DESCRIPTION | 8 +++--- MD5 | 16 ++++++------- NEWS.md | 4 +++ README.md | 13 +++++++---- build/vignette.rds |binary inst/doc/rolog.Rmd | 21 +++++++++--------- inst/doc/rolog.html | 49 ++++++++++++++++++++++-------------------- vignettes/bibliography.bibtex | 2 - vignettes/rolog.Rmd | 21 +++++++++--------- 9 files changed, 74 insertions(+), 60 deletions(-)
Title: Bottom-Up Proteomics and LiP-MS Quality Control and Data
Analysis Tools
Description: Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) <doi:10.1038/nbt.2999>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.
Author: Jan-Philipp Quast [aut, cre] ,
Dina Schuster [aut] ,
ETH Zurich [cph, fnd]
Maintainer: Jan-Philipp Quast <jpquast.software@gmail.com>
Diff between protti versions 0.9.1 dated 2024-10-21 and 1.0.0 dated 2026-01-14
DESCRIPTION | 21 MD5 | 195 +-- NAMESPACE | 4 NEWS.md | 37 R/analyse_functional_network.R | 2 R/assign_missingness.R | 40 R/assign_peptide_type.R | 87 + R/barcode_plot.R | 2 R/calculate_diff_abundance.R | 21 R/calculate_go_enrichment.R | 90 + R/calculate_kegg_enrichment.R | 2 R/calculate_protein_abundance.R | 2 R/calculate_treatment_enrichment.R | 4 R/correct_lip_for_abundance.R | 23 R/create_structure_contact_map.R | 2 R/data.R | 4 R/drc_4p.R | 2 R/extract_metal_binders.R | 155 ++ R/fetch_alphafold_aligned_error.R | 6 R/fetch_alphafold_prediction.R | 2 R/fetch_chebi.R | 317 +++-- R/fetch_interpro.R |only R/fetch_kegg.R | 4 R/fetch_metal_pdb.R | 4 R/fetch_pdb.R | 56 R/fetch_uniprot.R | 13 R/find_all_subs.R | 4 R/find_chebis.R | 2 R/find_peptide_in_structure.R | 41 R/fit_drc_4p.R | 2 R/impute.R | 1 R/impute_randomforest.R |only R/map_peptides_on_structure.R | 90 + R/normalise.R | 2 R/parallel_create_structure_contact_map.R | 12 R/parallel_fit_drc_4p.R | 12 R/predict_alphafold_domain.R | 4 R/pval_distribution_plot.R | 3 R/qc_charge_states.R | 4 R/qc_contaminants.R | 2 R/qc_cvs.R | 5 R/qc_data_completeness.R | 2 R/qc_ids.R | 2 R/qc_median_intensities.R | 2 R/qc_missed_cleavages.R | 4 R/qc_pca.R | 4 R/qc_peak_width.R | 1 R/qc_peptide_type.R | 8 R/qc_proteome_coverage.R | 4 R/qc_sample_correlation.R | 14 R/qc_sequence_coverage.R | 3 R/read_protti.R | 2 R/scale_protti.R | 8 R/volcano_plot.R | 2 README.md | 14 build/partial.rdb |binary build/vignette.rds |binary data/metal_chebi_uniprot.rda |binary data/metal_go_slim_subset.rda |binary data/metal_list.rda |binary inst/doc/data_analysis_dose_response_workflow.R | 320 ++--- inst/doc/data_analysis_dose_response_workflow.Rmd | 2 inst/doc/data_analysis_dose_response_workflow.html | 11 inst/doc/data_analysis_single_dose_treatment_workflow.R | 445 +++---- inst/doc/data_analysis_single_dose_treatment_workflow.Rmd | 7 inst/doc/data_analysis_single_dose_treatment_workflow.html | 30 inst/doc/input_preparation_workflow.R | 452 ++++---- inst/doc/input_preparation_workflow.Rmd | 2 inst/doc/input_preparation_workflow.html | 13 inst/doc/protein_structure_workflow.R | 620 +++++------ inst/doc/protein_structure_workflow.Rmd | 10 inst/doc/protein_structure_workflow.html | 11 inst/doc/quality_control_workflow.R | 328 ++--- inst/doc/quality_control_workflow.Rmd | 2 inst/doc/quality_control_workflow.html | 11 man/assign_peptide_type.Rd | 25 man/calculate_diff_abundance.Rd | 7 man/calculate_go_enrichment.Rd | 4 man/extract_metal_binders.Rd | 17 man/fetch_alphafold_aligned_error.Rd | 5 man/fetch_alphafold_prediction.Rd | 2 man/fetch_interpro.Rd |only man/fetch_kegg.Rd | 4 man/fetch_uniprot.Rd | 8 man/figures/README-volcano-1.png |binary man/find_peptide_in_structure.Rd | 6 man/impute_randomforest.Rd |only man/map_peptides_on_structure.Rd | 23 man/metal_chebi_uniprot.Rd | 2 man/metal_list.Rd | 2 man/scale_protti.Rd | 5 tests/testthat/Rplots.pdf |only tests/testthat/test-auxiliary_functions.R | 46 tests/testthat/test-fetch_extract_and_enrichment_functions.R | 31 tests/testthat/test-structure_functions.R | 12 tests/testthat/test-workflow.R | 42 vignettes/data_analysis_dose_response_workflow.Rmd | 2 vignettes/data_analysis_single_dose_treatment_workflow.Rmd | 7 vignettes/input_preparation_workflow.Rmd | 2 vignettes/protein_structure_workflow.Rmd | 10 vignettes/quality_control_workflow.Rmd | 2 101 files changed, 2237 insertions(+), 1640 deletions(-)
Title: Modelling Reproduction and Survival Data in Ecotoxicology
Description: Advanced methods for a valuable quantitative environmental risk
assessment using Bayesian inference of survival and reproduction Data. Among
others, it facilitates Bayesian inference of the general unified
threshold model of survival (GUTS). See our companion paper
Baudrot and Charles (2021) <doi:10.21105/joss.03200>,
as well as complementary details in Baudrot et al. (2018)
<doi:10.1021/acs.est.7b05464> and Delignette-Muller et al.
(2017) <doi:10.1021/acs.est.6b05326>.
Author: Virgile Baudrot [aut, cre],
Sandrine Charles [aut],
Marie Laure Delignette-Muller [aut],
Wandrille Duchemin [ctb],
Benoit Goussen [ctb],
Nils Kehrein [ctb],
Guillaume Kon-Kam-King [ctb],
Christelle Lopes [ctb],
Philippe Ruiz [ctb],
Alexander Singer [ [...truncated...]
Maintainer: Virgile Baudrot <virgile.baudrot@qonfluens.com>
Diff between morse versions 3.3.4 dated 2024-09-18 and 3.3.5 dated 2026-01-14
DESCRIPTION | 8 MD5 | 20 - NEWS | 7 R/morse-internal.R | 6 build/vignette.rds |binary inst/doc/MinimalWorkingExample.R | 180 ++++++------ inst/doc/MinimalWorkingExample.html | 1 inst/doc/modelling.html | 2 inst/doc/tutorial.R | 348 ++++++++++++------------- inst/doc/tutorial.html | 501 ++++++++++++++++++------------------ tests/testthat/test-LCx.R | 4 11 files changed, 549 insertions(+), 528 deletions(-)
Title: Hilbert Similarity Index for High Dimensional Data
Description: Quantifying similarity between high-dimensional single cell samples is challenging, and usually requires
some simplifying hypothesis to be made. By transforming the high dimensional space into a high dimensional grid,
the number of cells in each sub-space of the grid is characteristic of a given sample. Using a Hilbert curve
each sample can be visualized as a simple density plot, and the distance between samples can be calculated from
the distribution of cells using the Jensen-Shannon distance. Bins that correspond to significant differences
between samples can identified using a simple bootstrap procedure.
Author: Yann Abraham [aut, cre],
Marilisa Neri [aut],
John Skilling [ctb]
Maintainer: Yann Abraham <yann.abraham@gmail.com>
This is a re-admission after prior archival of version 0.4.3 dated 2019-11-11
Diff between hilbertSimilarity versions 0.4.3 dated 2019-11-11 and 0.4.4 dated 2026-01-14
hilbertSimilarity-0.4.3/hilbertSimilarity/README.md |only hilbertSimilarity-0.4.3/hilbertSimilarity/man/hilbertSimilarity.Rd |only hilbertSimilarity-0.4.3/hilbertSimilarity/src/Makevars |only hilbertSimilarity-0.4.3/hilbertSimilarity/src/Makevars.win |only hilbertSimilarity-0.4.4/hilbertSimilarity/DESCRIPTION | 17 hilbertSimilarity-0.4.4/hilbertSimilarity/MD5 | 79 hilbertSimilarity-0.4.4/hilbertSimilarity/NAMESPACE | 54 hilbertSimilarity-0.4.4/hilbertSimilarity/R/RcppExports.R | 86 hilbertSimilarity-0.4.4/hilbertSimilarity/R/add.cut.R | 70 hilbertSimilarity-0.4.4/hilbertSimilarity/R/andrewsProjection.R | 90 hilbertSimilarity-0.4.4/hilbertSimilarity/R/do.cut.R | 92 hilbertSimilarity-0.4.4/hilbertSimilarity/R/do.hilbert.R | 68 hilbertSimilarity-0.4.4/hilbertSimilarity/R/hilbert.order.R | 48 hilbertSimilarity-0.4.4/hilbertSimilarity/R/hilbertProjection.R | 64 hilbertSimilarity-0.4.4/hilbertSimilarity/R/hilbertSimilarity.R | 28 hilbertSimilarity-0.4.4/hilbertSimilarity/R/js.dist.R | 68 hilbertSimilarity-0.4.4/hilbertSimilarity/R/localMaxima.R | 46 hilbertSimilarity-0.4.4/hilbertSimilarity/R/localMinima.R | 44 hilbertSimilarity-0.4.4/hilbertSimilarity/R/make.cut.R | 412 +- hilbertSimilarity-0.4.4/hilbertSimilarity/R/show.cut.R | 128 hilbertSimilarity-0.4.4/hilbertSimilarity/build/vignette.rds |binary hilbertSimilarity-0.4.4/hilbertSimilarity/inst/doc/comparing_samples.R | 316 +- hilbertSimilarity-0.4.4/hilbertSimilarity/inst/doc/comparing_samples.Rmd | 606 ++-- hilbertSimilarity-0.4.4/hilbertSimilarity/inst/doc/comparing_samples.html | 1165 +++++--- hilbertSimilarity-0.4.4/hilbertSimilarity/inst/doc/identifying_effects.R | 356 +- hilbertSimilarity-0.4.4/hilbertSimilarity/inst/doc/identifying_effects.Rmd | 524 +-- hilbertSimilarity-0.4.4/hilbertSimilarity/inst/doc/identifying_effects.html | 1401 ++++++---- hilbertSimilarity-0.4.4/hilbertSimilarity/man/add.cut.Rd | 90 hilbertSimilarity-0.4.4/hilbertSimilarity/man/andrewsProjection.Rd | 140 hilbertSimilarity-0.4.4/hilbertSimilarity/man/do.cut.Rd | 92 hilbertSimilarity-0.4.4/hilbertSimilarity/man/do.hilbert.Rd | 92 hilbertSimilarity-0.4.4/hilbertSimilarity/man/hilbert.order.Rd | 90 hilbertSimilarity-0.4.4/hilbertSimilarity/man/hilbertMapping.Rd | 80 hilbertSimilarity-0.4.4/hilbertSimilarity/man/hilbertProjection.Rd | 112 hilbertSimilarity-0.4.4/hilbertSimilarity/man/hilbertSimilarity-package.Rd |only hilbertSimilarity-0.4.4/hilbertSimilarity/man/js.dist.Rd | 218 - hilbertSimilarity-0.4.4/hilbertSimilarity/man/localMaxima.Rd | 52 hilbertSimilarity-0.4.4/hilbertSimilarity/man/localMinima.Rd | 52 hilbertSimilarity-0.4.4/hilbertSimilarity/man/make.cut.Rd | 132 hilbertSimilarity-0.4.4/hilbertSimilarity/man/show.cut.Rd | 92 hilbertSimilarity-0.4.4/hilbertSimilarity/src/RcppExports.cpp | 5 hilbertSimilarity-0.4.4/hilbertSimilarity/vignettes/comparing_samples.Rmd | 606 ++-- hilbertSimilarity-0.4.4/hilbertSimilarity/vignettes/identifying_effects.Rmd | 524 +-- 43 files changed, 4398 insertions(+), 3741 deletions(-)
More information about hilbertSimilarity at CRAN
Permanent link
Title: Credible Visualization for Two-Dimensional Projections of Data
Description: Projections are common dimensionality reduction methods, which represent high-dimensional data in a two-dimensional space. However, when restricting the output space to two dimensions, which results in a two dimensional scatter plot (projection) of the data, low dimensional similarities do not represent high dimensional distances coercively [Thrun, 2018] <DOI: 10.1007/978-3-658-20540-9>. This could lead to a misleading interpretation of the underlying structures [Thrun, 2018]. By means of the 3D topographic map the generalized Umatrix is able to depict errors of these two-dimensional scatter plots. The package is derived from the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9> and the main algorithm called simplified self-organizing map for dimensionality reduction methods is published in Thrun, M.C. and Ultsch, A.: "Uncovering High-dimensional Structures of Projections from Dimension [...truncated...]
Author: Quirin Stier [aut, cre] ,
Michael Thrun [aut, cph] ,
The Khronos Group Inc. [cph]
Maintainer: Quirin Stier <Quirin_Stier@gmx.de>
Diff between GeneralizedUmatrixGPU versions 0.1.8 dated 2025-11-17 and 0.1.10 dated 2026-01-14
DESCRIPTION | 10 - MD5 | 14 - R/GeneralizedUmatrixGPU.R | 14 + build/partial.rdb |binary man/GeneralizedUmatrixGPU-package.Rd | 9 - man/GeneralizedUmatrixGPU.Rd | 7 src/RcppExports.cpp | 2 src/trainSESOM.cpp | 277 ++++++++++++++++++++++++----------- 8 files changed, 221 insertions(+), 112 deletions(-)
More information about GeneralizedUmatrixGPU at CRAN
Permanent link
Title: Generate and Simulate Deterministic Compartmental Models
Description: R package to build and simulate deterministic compartmental models that can be non-Markovian. Length of stay in each compartment can be defined to follow a parametric distribution (d_exponential(), d_gamma(), d_weibull(), d_lognormal()) or a non-parametric distribution (nonparametric()). Other supported types of transition from one compartment to another includes fixed transition (constant()), multinomial (multinomial()), fixed transition probability (transprob()).
Author: Thinh Ong [aut, cph] ,
Anh Phan [aut, cre] ,
Marc Choisy [aut] ,
Niels Lohman [ctb, cph] ,
Bjoern Hoehrmann [ctb, cph] ,
Florian Loitsch [ctb, cph] ,
Ingo Berg [ctb, cph]
Maintainer: Anh Phan <anhptq@oucru.org>
Diff between denim versions 1.2.2 dated 2025-08-21 and 1.2.3 dated 2026-01-14
DESCRIPTION | 30 +-- MD5 | 21 +- NEWS.md | 5 inst/doc/denim.R | 4 inst/doc/denim.Rmd | 12 + inst/doc/denim.html | 114 ++++++++---- man/denim-package.Rd | 8 src/Compartment.cpp | 7 src/test-denim.cpp | 23 ++ tests/testthat/test-denim_dsl.R | 155 +++++++++++++++++ vignettes/denim.Rmd | 12 + vignettes/images/denim_website-runtime-scaling-mod.png |only 12 files changed, 314 insertions(+), 77 deletions(-)
Title: Analysis and Visualization of Droplet Digital PCR in R and on
the Web
Description: An interface to explore, analyze, and visualize droplet digital PCR
(ddPCR) data in R. This is the first non-proprietary software for analyzing
two-channel ddPCR data. An interactive tool was also created and is available
online to facilitate this analysis for anyone who is not comfortable with
using R.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between ddpcr versions 1.15.2 dated 2025-11-08 and 1.16.0 dated 2026-01-14
ddpcr-1.15.2/ddpcr/inst/vignette_files |only ddpcr-1.15.2/ddpcr/inst/vignettes-supp |only ddpcr-1.16.0/ddpcr/DESCRIPTION | 18 ddpcr-1.16.0/ddpcr/MD5 | 125 ddpcr-1.16.0/ddpcr/NAMESPACE | 3 ddpcr-1.16.0/ddpcr/NEWS.md | 5 ddpcr-1.16.0/ddpcr/R/aaa.R | 2 ddpcr-1.16.0/ddpcr/R/concentration.R | 4 ddpcr-1.16.0/ddpcr/R/ddpcr-package.R | 3 ddpcr-1.16.0/ddpcr/R/empty.R | 67 ddpcr-1.16.0/ddpcr/R/failures.R | 8 ddpcr-1.16.0/ddpcr/R/outliers.R | 8 ddpcr-1.16.0/ddpcr/R/plate-attribs.R | 10 ddpcr-1.16.0/ddpcr/R/plate-utils.R | 29 ddpcr-1.16.0/ddpcr/R/plate.R | 4 ddpcr-1.16.0/ddpcr/R/plot.R | 86 ddpcr-1.16.0/ddpcr/R/pnpp_experiment-classify.R | 19 ddpcr-1.16.0/ddpcr/R/pnpp_experiment-filled.R | 4 ddpcr-1.16.0/ddpcr/R/pnpp_experiment-plot.R | 10 ddpcr-1.16.0/ddpcr/R/pnpp_experiment-reclassify.R | 12 ddpcr-1.16.0/ddpcr/R/read.R | 4 ddpcr-1.16.0/ddpcr/R/subset.R | 12 ddpcr-1.16.0/ddpcr/R/type-custom_thresholds.R | 4 ddpcr-1.16.0/ddpcr/R/type-pnpp_experiment.R | 10 ddpcr-1.16.0/ddpcr/R/utils.R | 52 ddpcr-1.16.0/ddpcr/README.md | 24 ddpcr-1.16.0/ddpcr/build/vignette.rds |binary ddpcr-1.16.0/ddpcr/inst/doc/algorithm.Rmd | 13 ddpcr-1.16.0/ddpcr/inst/doc/algorithm.html | 719 ++-- ddpcr-1.16.0/ddpcr/inst/doc/extend.html | 1003 +++-- ddpcr-1.16.0/ddpcr/inst/doc/overview.R | 2 ddpcr-1.16.0/ddpcr/inst/doc/overview.Rmd | 15 ddpcr-1.16.0/ddpcr/inst/doc/overview.html | 1769 +++++----- ddpcr-1.16.0/ddpcr/inst/doc/technical_details.Rmd | 10 ddpcr-1.16.0/ddpcr/inst/doc/technical_details.html | 553 ++- ddpcr-1.16.0/ddpcr/inst/sample_data/read_quant |only ddpcr-1.16.0/ddpcr/inst/shiny/server/tab-results.R | 2 ddpcr-1.16.0/ddpcr/man/ddpcr-package.Rd | 48 ddpcr-1.16.0/ddpcr/man/plot.ddpcr_plate.Rd | 4 ddpcr-1.16.0/ddpcr/tests/testthat/test-pnpp_experiment-calculate_neg_freq.R | 2 ddpcr-1.16.0/ddpcr/tests/testthat/test-read.R | 11 ddpcr-1.16.0/ddpcr/tests/testthat/test-utils.R | 23 ddpcr-1.16.0/ddpcr/vignettes/algorithm.Rmd | 13 ddpcr-1.16.0/ddpcr/vignettes/figures |only ddpcr-1.16.0/ddpcr/vignettes/generate-figures.R |only ddpcr-1.16.0/ddpcr/vignettes/overview.Rmd | 15 ddpcr-1.16.0/ddpcr/vignettes/technical_details.Rmd | 10 ddpcr-1.16.0/ddpcr/vignettes/vignette_data_B06_Amplitude.csv |only 48 files changed, 2939 insertions(+), 1796 deletions(-)
Title: Functions for University of Auckland Course STATS 201/208 Data
Analysis
Description: A set of functions used in teaching STATS 201/208 Data Analysis at
the University of Auckland. The functions are designed to make parts of R more
accessible to a large undergraduate population who are mostly not statistics
majors.
Author: Brant Deppa [aut] ,
James Curran [aut, cre] ,
Hannah Yun [ctb],
Rachel Fewster [ctb],
Russell Millar [ctb],
Ben Stevenson [ctb],
Andrew Balemi [ctb],
Chris Wild [ctb],
Sophie Jones [ctb],
Dineika Chandra [ctr],
Brendan McArdle [ctr]
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between s20x versions 3.2.1 dated 2025-12-17 and 3.2.2 dated 2026-01-14
DESCRIPTION | 7 MD5 | 107 +-- R/cooks20x.R | 110 +-- R/eovcheck.R | 450 +++++++------- R/interactionPlots.R | 380 ++++++------ R/modcheck.R | 220 +++---- R/modelcheck.R | 156 ++--- R/pairs20x.R | 106 +-- R/s20x-data.R | 1555 ++++++++++++++++++++++++--------------------------- README.md | 14 data/airpass.df.rda |binary data/apples.df.rda |binary data/beer.df.rda |binary data/fire.df.rda |binary data/fruitfly.df.rda |only data/larain.df.rda |binary data/rain.df.rda |binary man/airpass.df.Rd | 8 man/apples.df.Rd | 12 man/arousal.df.Rd | 11 man/beer.df.Rd | 13 man/body.df.Rd | 18 man/books.df.Rd | 7 man/bursary.df.Rd | 9 man/butterfat.df.Rd | 11 man/camplake.df.Rd | 10 man/chalk.df.Rd | 10 man/computer.df.Rd | 9 man/course.df.Rd | 34 - man/course2way.df.Rd | 10 man/diamonds.df.Rd | 8 man/fire.df.Rd | 9 man/fruitfly.df.Rd | 9 man/house.df.Rd | 8 man/incomes.df.Rd | 3 man/lakemary.df.Rd | 8 man/larain.df.Rd | 8 man/mazda.df.Rd | 8 man/mening.df.Rd | 3 man/mergers.df.Rd | 3 man/mozart.df.Rd | 10 man/nail.df.Rd | 8 man/oysters.df.Rd | 10 man/peru.df.Rd | 14 man/rain.df.Rd | 11 man/seeds.df.Rd | 11 man/sheep.df.Rd | 9 man/skulls.df.Rd | 6 man/snapper.df.Rd | 8 man/soyabean.df.Rd | 10 man/teach.df.Rd | 10 man/technitron.df.Rd | 21 man/thyroid.df.Rd | 11 man/toothpaste.df.Rd | 10 man/zoo.df.Rd | 18 55 files changed, 1776 insertions(+), 1725 deletions(-)
Title: R Code for Mark Analysis
Description: An interface to the software package MARK that constructs input
files for MARK and extracts the output. MARK was developed by Gary White
and is freely available at <http://www.phidot.org/software/mark/downloads/>
but is not open source.
Author: Jeff Laake [cre, aut],
Eldar Rakhimberdiev [ctb],
Ben Augustine [ctb],
Daniel Turek [ctb],
Brett McClintock [ctb],
Jim Hines [ctb],
analysis from Bret Collier [ctb],
Jay Rotella [ctb],
David Pavlacky [ctb],
Andrew Paul [aut],
Luke Eberhart- Phillips [...truncated...]
Maintainer: Jeff Laake <jefflaake@gmail.com>
Diff between RMark versions 3.0.0 dated 2022-08-13 and 3.0.6 dated 2026-01-14
DESCRIPTION | 68 ++++++- MD5 | 48 ++--- NAMESPACE | 1 NEWS | 55 ++++++ R/RMark-package.R | 380 +++++++++++++++++++++++++++++++++++++++++- R/covariate.predictions.r | 4 R/extract.mark.output.R | 7 R/make.design.data.R | 15 + R/make.mark.model.R | 17 + R/model.average.default.r | 1 R/model.average.list.r | 5 R/model.average.marklist.R | 13 - R/popan.r | 2 R/predict_real.R | 16 - R/process.data.R | 2 R/zzz.R | 4 inst/CITATION | 26 -- inst/DerivedPar.txt | 3 inst/extdata/MSJS.inp |only inst/extdata/MSJS3state.inp |only inst/models.txt | 1 inst/parameters.txt | 22 +- man/HidMarkov.Rd |only man/MSJollySeber.Rd |only man/NSpeciesOcc.Rd | 6 man/RDMultScalOcc.Rd | 7 man/model.average.marklist.Rd | 11 - 27 files changed, 612 insertions(+), 102 deletions(-)
Title: Functions for Clustering and Testing of Presence-Absence,
Abundance and Multilocus Genetic Data
Description: Distance-based parametric bootstrap tests for clustering with
spatial neighborhood information. Some distance measures,
Clustering of presence-absence, abundance and multilocus genetic data
for species delimitation, nearest neighbor
based noise detection. Genetic distances between communities.
Tests whether various distance-based regressions
are equal. Try package?prabclus for on overview.
Author: Christian Hennig [aut, cre],
Bernhard Hausdorf [aut]
Maintainer: Christian Hennig <christian.hennig@unibo.it>
Diff between prabclus versions 2.3-4 dated 2024-09-24 and 2.3-5 dated 2026-01-14
DESCRIPTION | 11 - MD5 | 10 - man/NNclean.Rd | 2 tests/Examples/prabclus-Ex.Rout.save | 20 +- tests/prabclustests.R | 4 tests/prabclustests.Rout.save | 278 ++++++++++++++++------------------- 6 files changed, 155 insertions(+), 170 deletions(-)
Title: Open Perimetry Interface
Description: Implementation of the Open Perimetry Interface (OPI) for simulating and controlling visual field machines using R. The OPI is a standard for interfacing with visual field testing machines (perimeters) first started as an open source project with support of Haag-Streit in 2010. It specifies basic functions that allow many visual field tests to be constructed. As of February 2022 it is fully implemented on the Haag-Streit Octopus 900 and 'CrewT ImoVifa' ('Topcon Tempo') with partial implementations on the Centervue Compass, Kowa AP 7000 and Android phones. It also has a cousin: the R package 'visualFields', which has tools for analysing and manipulating visual field data.
Author: Andrew Turpin [cre, aut, cph] ,
David Lawson [ctb, cph],
Ivan Marin-Franch [ctb, cph],
Matthias Muller [ctb],
Jonathan Denniss [ctb, cph],
Astrid Zeman [ctb],
Giovanni Montesano [ctb]
Maintainer: Andrew Turpin <andrew.turpin@lei.org.au>
Diff between OPI versions 3.0.5 dated 2025-10-14 and 3.0.6 dated 2026-01-14
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 5 ++++- tests/testthat/test-opiPresent.r | 2 +- 4 files changed, 12 insertions(+), 9 deletions(-)
Title: Flexible Procedures for Clustering
Description: Various methods for clustering and cluster validation.
Fixed point clustering. Linear regression clustering. Clustering by
merging Gaussian mixture components. Symmetric
and asymmetric discriminant projections for visualisation of the
separation of groupings. Cluster validation statistics
for distance based clustering including corrected Rand index.
Standardisation of cluster validation statistics by random clusterings and
comparison between many clustering methods and numbers of clusters based on
this.
Cluster-wise cluster stability assessment. Methods for estimation of
the number of clusters: Calinski-Harabasz, Tibshirani and Walther's
prediction strength, Fang and Wang's bootstrap stability.
Gaussian/multinomial mixture fitting for mixed
continuous/categorical variables. Variable-wise statistics for cluster
interpretation. DBSCAN clustering. Interface functions for many
clustering methods implemented in R, including estimating the number of
clusters with kmeans, pam and clara. Modal [...truncated...]
Author: Christian Hennig [aut, cre]
Maintainer: Christian Hennig <christian.hennig@unibo.it>
Diff between fpc versions 2.2-13 dated 2024-09-24 and 2.2-14 dated 2026-01-14
fpc-2.2-13/fpc/tests/fpctests_notallin.R |only fpc-2.2-13/fpc/tests/fpctests_notallin.Rout.save |only fpc-2.2-14/fpc/DESCRIPTION | 8 ++-- fpc-2.2-14/fpc/MD5 | 18 ++++----- fpc-2.2-14/fpc/man/extract.mixturepars.Rd | 4 +- fpc-2.2-14/fpc/man/mergenormals.Rd | 4 +- fpc-2.2-14/fpc/man/mergeparameters.Rd | 4 +- fpc-2.2-14/fpc/man/mixdens.Rd | 4 +- fpc-2.2-14/fpc/man/weightplots.Rd | 4 +- fpc-2.2-14/fpc/tests/Examples/fpc-Ex.Rout.save | 46 ++++++++++++++--------- fpc-2.2-14/fpc/tests/fpctest_notallin.R |only fpc-2.2-14/fpc/tests/fpctest_notallin.Rout.save |only 12 files changed, 51 insertions(+), 41 deletions(-)
Title: Fast Computation of some Matrices Useful in Statistics
Description: Small set of functions designed to speed up the computation of certain
matrix operations that are commonly used in statistics and econometrics. It provides
efficient implementations for the computation of several structured matrices, matrix
decompositions and statistical procedures, many of which have minimal memory overhead.
Furthermore, the package provides interfaces to C code callable by another C code
from other R packages.
Author: Felipe Osorio [aut, cre] ,
Alonso Ogueda [aut]
Maintainer: Felipe Osorio <faosorios.stat@gmail.com>
Diff between fastmatrix versions 0.6-4 dated 2025-10-23 and 0.6-6 dated 2026-01-14
fastmatrix-0.6-4/fastmatrix/src/omo.f |only fastmatrix-0.6-4/fastmatrix/src/omo_wrapper.c |only fastmatrix-0.6-6/fastmatrix/ChangeLog | 6 + fastmatrix-0.6-6/fastmatrix/DESCRIPTION | 13 +- fastmatrix-0.6-6/fastmatrix/MD5 | 42 ++++---- fastmatrix-0.6-6/fastmatrix/NAMESPACE | 9 - fastmatrix-0.6-6/fastmatrix/R/distn.R |only fastmatrix-0.6-6/fastmatrix/R/householder.R |only fastmatrix-0.6-6/fastmatrix/R/mediancenter.R | 2 fastmatrix-0.6-6/fastmatrix/R/rank1_update.R |only fastmatrix-0.6-6/fastmatrix/build/partial.rdb |binary fastmatrix-0.6-6/fastmatrix/inst/CITATION | 8 - fastmatrix-0.6-6/fastmatrix/inst/include/fastmatrix.h | 5 fastmatrix-0.6-6/fastmatrix/inst/include/fastmatrix_API.h | 25 ---- fastmatrix-0.6-6/fastmatrix/man/ccc.Rd | 4 fastmatrix-0.6-6/fastmatrix/man/chi.Rd |only fastmatrix-0.6-6/fastmatrix/man/house.Rd |only fastmatrix-0.6-6/fastmatrix/man/house.prod.Rd |only fastmatrix-0.6-6/fastmatrix/man/rank1.update.Rd |only fastmatrix-0.6-6/fastmatrix/src/RNG.c | 61 ----------- fastmatrix-0.6-6/fastmatrix/src/R_init_fastmatrix.c | 18 +-- fastmatrix-0.6-6/fastmatrix/src/distn.c |only fastmatrix-0.6-6/fastmatrix/src/fastmatrix.h | 62 +++++++---- fastmatrix-0.6-6/fastmatrix/src/householder.c |only fastmatrix-0.6-6/fastmatrix/src/matrix_API.c | 73 +++++++++++++- fastmatrix-0.6-6/fastmatrix/src/power_method.c | 6 - fastmatrix-0.6-6/fastmatrix/src/rank1_update.c |only fastmatrix-0.6-6/fastmatrix/src/wilson_hilferty.c | 2 28 files changed, 176 insertions(+), 160 deletions(-)
Title: Fast Agent-Based Epi Models
Description: A flexible framework for Agent-Based Models (ABM), the 'epiworldR' package provides methods for prototyping disease outbreaks and transmission models using a 'C++' backend, making it very fast. It supports multiple epidemiological models, including the Susceptible-Infected-Susceptible (SIS), Susceptible-Infected-Removed (SIR), Susceptible-Exposed-Infected-Removed (SEIR), and others, involving arbitrary mitigation policies and multiple-disease models. Users can specify infectiousness/susceptibility rates as a function of agents' features, providing great complexity for the model dynamics. Furthermore, 'epiworldR' is ideal for simulation studies featuring large populations.
Author: George Vega Yon [aut, cre] ,
Derek Meyer [aut] ,
Andrew Pulsipher [aut] ,
Susan Holmes [rev] ,
Abinash Satapathy [rev] ,
Carinogurjao [rev],
Centers for Disease Control and Prevention [fnd]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Diff between epiworldR versions 0.11.0.0 dated 2025-12-22 and 0.11.0.1 dated 2026-01-14
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 5 +++++ README.md | 29 ++++++++++++++++------------- inst/doc/advanced-modeling.html | 22 +++++++++++----------- inst/doc/getting-started.html | 18 +++++++++--------- inst/doc/likelihood-free-mcmc.html | 12 ++++++------ inst/doc/mixing.html | 12 ++++++------ inst/doc/run-multiple.html | 8 ++++---- inst/tinytest/test-model-methods.R | 7 +------ inst/tinytest/test-sir.R | 6 ------ man/figures/README-transmission-net-1.png |binary 12 files changed, 72 insertions(+), 75 deletions(-)
Title: Extension for 'DALEX' Package
Description: Provides wrapper of various machine learning models.
In applied machine learning, there
is a strong belief that we need to strike a balance
between interpretability and accuracy.
However, in field of the interpretable machine learning,
there are more and more new ideas for explaining black-box models,
that are implemented in 'R'.
'DALEXtra' creates 'DALEX' Biecek (2018) <doi:10.48550/arXiv.1806.08915> explainer for many type of models
including those created using 'python' 'scikit-learn' and 'keras' libraries, and 'java' 'h2o' library.
Important part of the package is Champion-Challenger analysis and innovative approach
to model performance across subsets of test data presented in Funnel Plot.
Author: Szymon Maksymiuk [aut, cre] ,
Przemyslaw Biecek [aut] ,
Hubert Baniecki [aut],
Anna Kozak [ctb]
Maintainer: Szymon Maksymiuk <sz.maksymiuk@gmail.com>
Diff between DALEXtra versions 2.3.0 dated 2023-05-25 and 2.3.1 dated 2026-01-14
DESCRIPTION | 16 ++++++++------ MD5 | 32 ++++++++++++++-------------- NAMESPACE | 4 +++ NEWS.md | 4 +++ R/explain_mlr.R | 2 - R/explain_mlr3.R | 4 --- R/explain_tidymodels.R | 3 -- R/explain_xgboost.R | 37 ++++++++------------------------- R/generate_chunk.R | 4 +++ R/model_info.R | 2 - R/yhat.R | 28 ++++--------------------- man/dalex_load_explainer.Rd | 38 +++++++++++++++++----------------- man/explain_mlr.Rd | 2 - man/explain_mlr3.Rd | 2 - man/explain_tidymodels.Rd | 3 -- man/explain_xgboost.Rd | 32 ++++++++-------------------- tests/testthat/test_xgboost_explain.R | 25 ++++++++-------------- 17 files changed, 92 insertions(+), 146 deletions(-)
Title: Make Fake Data
Description: Make fake data that looks realistic, supporting addresses,
person names, dates,
times, colors, coordinates, currencies, digital object identifiers
('DOIs'), jobs, phone numbers, 'DNA' sequences, doubles and integers
from distributions and within a range.
Author: Roel M. Hogervorst [cre, aut] ,
Scott Chamberlain [aut] ,
Kyle Voytovich [aut],
Martin Pedersen [ctb],
Brooke Anderson [rev] ,
Tristan Mahr [rev] ,
rOpenSci [fnd]
Maintainer: Roel M. Hogervorst <hogervorst.rm@gmail.com>
Diff between charlatan versions 0.6.1 dated 2024-10-17 and 0.6.2 dated 2026-01-14
DESCRIPTION | 18 ++-- MD5 | 58 ++++++------- NEWS.md | 24 ++--- R/address-provider-en_GB.R | 1 R/address-provider-en_NZ.R | 1 R/color-provider-en_US.R | 1 R/company-provider-es_MX.R | 1 R/company-provider-fr_FR.R | 2 R/jobs-provider.R | 1 R/misc-provider.R | 1 R/person-provider-cs_CZ.R | 1 R/person-provider-fi_FI.R | 1 R/person-provider-hr_HR.R | 1 R/person-provider-ne_NP.R | 1 R/person-provider-no_NO.R | 1 R/person-provider-pl_PL.R | 1 R/phonenumber-provider-rest.R | 9 -- R/zzz.R | 1 build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/charlatan.R | 4 inst/doc/charlatan.html | 153 +++++++++++++++++------------------ man/PhoneNumberProvider_nn_NO.Rd | 2 man/PhoneNumberProvider_no_NO.Rd | 10 +- tests/testthat/test-backwards-comp.R | 2 tests/testthat/test-datetime.R | 3 tests/testthat/test-fraudster.R | 1 tests/testthat/test-generate.R | 1 tests/testthat/test-missing.R | 1 tests/testthat/test-taxonomy.R | 2 30 files changed, 140 insertions(+), 164 deletions(-)
Title: Access Argentinian Data via APIs and Curated Datasets
Description: Provides functions to access data from public RESTful APIs including the 'ArgentinaDatos API',
'REST Countries API', and 'World Bank API' related to Argentina's exchange rates, inflation,
political figures, holidays, economic indicators, and general country-level statistics.
Additionally, the package includes curated datasets related to Argentina, covering topics
such as economic indicators, biodiversity, agriculture, human rights, genetic data, and
consumer prices. The package supports research and analysis focused on Argentina by
integrating open APIs with high-quality datasets from various domains.
For more details on the APIs, see:
'ArgentinaDatos API' <https://argentinadatos.com/>,
'REST Countries API' <https://restcountries.com/>,
and 'World Bank API' <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392>.
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between ArgentinAPI versions 0.2.0 dated 2025-09-13 and 0.2.1 dated 2026-01-14
DESCRIPTION | 6 - MD5 | 94 ++++++++++---------- NEWS.md | 19 ++++ R/argentinapi-package.R | 4 R/data-documentation.R | 4 R/get_argentina_child_mortality.R | 4 R/get_argentina_energy_use.R | 4 R/get_argentina_gdp.R | 4 R/get_argentina_hospital_beds.R | 4 R/get_argentina_life_expectancy.R | 4 R/get_argentina_population.R | 4 R/get_argentina_unemployment.R | 4 R/get_argentine_deputies.R | 4 R/get_argentine_senators.R | 16 ++- R/get_argentinian_holidays.R | 30 ++++-- R/get_country_info_ar.R | 4 R/get_presidential_events.R | 4 R/get_usd_exchange_rates.R | 4 R/utils.R | 4 R/view_datasets_ArgentinAPI.R | 4 build/vignette.rds |binary inst/CITATION | 2 inst/doc/ArgentinAPI_vignette.html | 31 +++--- inst/licenses/LICENSE | 2 inst/licenses/LICENSE.md | 2 man/get_argentine_senators.Rd | 1 man/get_argentinian_holidays.Rd | 5 - tests/testthat/test-Argentina_CPI_ts.R | 4 tests/testthat/test-Argentina_taxes_df.R | 4 tests/testthat/test-STRs_argentina_list.R | 4 tests/testthat/test-corn_nitrogen_df.R | 4 tests/testthat/test-detention_centers_tbl_df.R | 4 tests/testthat/test-get_argentina_child_mortality.R | 4 tests/testthat/test-get_argentina_energy_use.R | 4 tests/testthat/test-get_argentina_gdp.R | 4 tests/testthat/test-get_argentina_hospital_beds.R | 4 tests/testthat/test-get_argentina_life_expectancy.R | 4 tests/testthat/test-get_argentina_population.R | 4 tests/testthat/test-get_argentina_unemployment.R | 4 tests/testthat/test-get_argentine_deputies.R | 4 tests/testthat/test-get_argentine_senators.R | 15 ++- tests/testthat/test-get_argentinian_holidays.R | 20 +++- tests/testthat/test-get_country_info_ar.R | 4 tests/testthat/test-get_presidential_events.R | 4 tests/testthat/test-get_usd_exchange_rates.R | 4 tests/testthat/test-pollination_matrix.R | 4 tests/testthat/test-repression_victims_tbl_df.R | 4 tests/testthat/test-view_datasets_ArgentinAPI.R | 4 48 files changed, 217 insertions(+), 162 deletions(-)
Title: Create Table Summaries and Export Neat Tables to 'Excel'
Description: A high-level interface for creating and exporting summary tables to
'Excel'. Built on 'dplyr' and 'openxlsx', it provides tools for generating
one-way to n-way tables, and summarizing multiple response questions
and question blocks. Tables are exported with native 'Excel' formatting,
including titles, footnotes, and basic styling options.
Author: Nicholas Hilderson [aut, cre, cph]
Maintainer: Nicholas Hilderson <nhilderson.code@gmail.com>
Diff between xlr versions 1.0.3 dated 2025-03-07 and 1.1.0 dated 2026-01-14
DESCRIPTION | 18 MD5 | 113 +- NAMESPACE | 53 + NEWS.md | 49 + R/build_multiple_response_table.R | 212 ++++- R/build_question_block_table.R | 80 + R/is_xlr_type.R | 3 R/make_wider.R |only R/xlr_doc.R | 8 R/xlr_format.R | 42 - R/xlr_integer.R | 121 +-- R/xlr_n_percent.R |only R/xlr_numeric.R | 181 ++-- R/xlr_percent.R | 157 ++- R/xlr_table.R | 17 R/xlr_to_workbook.R | 36 README.md | 16 build/vignette.rds |binary inst/doc/xlr.Rmd | 2 inst/doc/xlr.html | 41 - inst/examples/build_multiple_response_table.R | 49 + inst/examples/xlr_n_percent.R |only man/apply_NA_rules.Rd |only man/build_mtable.Rd | 63 + man/build_qtable.Rd | 63 - man/make_wider.Rd |only man/xlr_format.Rd | 11 man/xlr_n_percent.Rd |only tests/testthat/_output_excel_snaps/add_TOC_to_workbook.xlsx |binary tests/testthat/_output_excel_snaps/add_TOC_to_workbook_old_workbook.xlsx |binary tests/testthat/_output_excel_snaps/column_widths.xlsx |only tests/testthat/_output_excel_snaps/create_table_of_contents.xlsx |binary tests/testthat/_output_excel_snaps/data_to_worksheet.xlsx |binary tests/testthat/_output_excel_snaps/data_to_worksheet_data_table.xlsx |binary tests/testthat/_output_excel_snaps/data_to_worksheet_data_table_name.xlsx |binary tests/testthat/_output_excel_snaps/dataframe_to_sheet.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_sheet.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_workbook.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_workbook_TOC.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_workbook_old_wb.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_workbook_old_wb_2.xlsx |binary tests/testthat/_snaps/build_multiple_response_table.md | 24 tests/testthat/_snaps/build_question_block_table.md | 4 tests/testthat/_snaps/make_wider.md |only tests/testthat/_snaps/xlr_format.md | 34 tests/testthat/_snaps/xlr_integer.md | 20 tests/testthat/_snaps/xlr_n_percent.md |only tests/testthat/_snaps/xlr_numeric.md | 26 tests/testthat/_snaps/xlr_percent.md | 22 tests/testthat/_snaps/xlr_table.md | 8 tests/testthat/_snaps/xlr_to_workbook.md | 6 tests/testthat/_snaps/xlr_vector.md | 4 tests/testthat/test-build_multiple_response_table.R | 402 +++++++++- tests/testthat/test-build_question_block_table.R | 291 +++++++ tests/testthat/test-make_wider.R |only tests/testthat/test-xlr_format.R | 20 tests/testthat/test-xlr_integer.R | 83 +- tests/testthat/test-xlr_n_percent.R |only tests/testthat/test-xlr_numeric.R | 51 + tests/testthat/test-xlr_percent.R | 107 +- tests/testthat/test-xlr_to_workbook.R | 59 + tests/testthat/test_xlsx_files/data_to_worksheet.xlsx |binary vignettes/xlr.Rmd | 2 63 files changed, 2000 insertions(+), 498 deletions(-)