Title: Access Drug Regulatory Data via FDA and Health Canada APIs
Description: Provides functions to access drug regulatory data from public RESTful APIs
including the 'FDA Open API' and the 'Health Canada Drug Product Database API',
retrieving real-time or historical information on drug approvals, adverse events,
recalls, and product details. Additionally, the package includes a curated collection
of open datasets focused on drugs, pharmaceuticals, treatments, and clinical studies.
These datasets cover diverse topics such as treatment dosages, pharmacological studies,
placebo effects, drug reactions, misuses of pain relievers, and vaccine effectiveness.
The package supports reproducible research and teaching in pharmacology, medicine,
and healthcare by integrating reliable international APIs and structured datasets
from public, academic, and government sources.
For more information on the APIs, see:
'FDA API' <https://open.fda.gov/apis/> and
'Health Canada API' <https://health-products.canada.ca/api/documentation/dpd-documentation-en.html>.
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between MedxR versions 0.1.0 dated 2025-10-16 and 0.1.1 dated 2026-01-14
DESCRIPTION | 6 - MD5 | 115 ++++++++++++------------ NAMESPACE | 1 NEWS.md |only R/data-documentation.R | 4 R/get_fda_adverse_events.R | 4 R/get_fda_drug_labels.R | 4 R/get_fda_drugs_approved.R | 4 R/get_fda_ndc_directory.R | 4 R/get_hc_active_ingredients.R | 4 R/get_hc_companies.R | 4 R/get_hc_din.R | 4 R/get_hc_drug_by_din.R | 73 +++++++++++++-- R/get_hc_drug_products.R | 4 R/get_hc_forms.R | 4 R/get_hc_search_drug.R | 4 R/medxr-package.R | 4 R/utils.R | 4 R/view_datasets_MedxR.R | 4 build/vignette.rds |binary inst/CITATION | 2 inst/doc/MedxR_vignette.R | 91 ++++++++---------- inst/doc/MedxR_vignette.Rmd | 22 +--- inst/doc/MedxR_vignette.html | 94 +++++++------------ inst/licenses/LICENSE | 2 inst/licenses/LICENSE.md | 2 man/get_hc_drug_by_din.Rd | 9 + tests/testthat/test-ATC_code_tbl_df.R | 4 tests/testthat/test-BCG_vaccine_df.R | 4 tests/testthat/test-aspirin_infarction_df.R | 4 tests/testthat/test-binding_df.R | 4 tests/testthat/test-caffeine_matrix.R | 4 tests/testthat/test-copd_drug_therapy_df.R | 4 tests/testthat/test-dosage_tbl_df.R | 4 tests/testthat/test-drug_prices_tbl_df.R | 4 tests/testthat/test-drugsmisuse_tbl_df.R | 4 tests/testthat/test-get_fda_adverse_events.R | 4 tests/testthat/test-get_fda_drug_labels.R | 4 tests/testthat/test-get_fda_drugs_approved.R | 4 tests/testthat/test-get_fda_ndc_directory.R | 4 tests/testthat/test-get_hc_active_ingredients.R | 4 tests/testthat/test-get_hc_companies.R | 4 tests/testthat/test-get_hc_din.R | 4 tests/testthat/test-get_hc_drug_by_din.R | 70 +++++++++++++- tests/testthat/test-get_hc_drug_products.R | 4 tests/testthat/test-get_hc_forms.R | 4 tests/testthat/test-get_hc_search_drug.R | 4 tests/testthat/test-histamine_matrix.R | 4 tests/testthat/test-naoh_digest_df.R | 4 tests/testthat/test-oilvitaminA_df.R | 4 tests/testthat/test-oral_anticoagulants_df.R | 4 tests/testthat/test-parkinsons_list.R | 4 tests/testthat/test-pharmacy_tbl_df.R | 4 tests/testthat/test-placebos_df.R | 4 tests/testthat/test-products_drug_tbl_df.R | 4 tests/testthat/test-ratliver_df.R | 4 tests/testthat/test-reactions_drug_tbl_df.R | 4 tests/testthat/test-view_datasets_MedxR.R | 4 vignettes/MedxR_vignette.Rmd | 22 +--- 59 files changed, 379 insertions(+), 306 deletions(-)
Title: Model and Analyse Interval Data
Description: Implements methodologies for modelling interval data by Normal
and Skew-Normal distributions, considering appropriate parameterizations of
the variance-covariance matrix that takes into account the intrinsic nature of
interval data, and lead to four different possible configuration structures.
The Skew-Normal parameters can be estimated by maximum likelihood, while Normal
parameters may be estimated by maximum likelihood or robust trimmed maximum
likelihood methods.
Author: Pedro Duarte Silva [aut, cre],
Paula Brito [aut]
Maintainer: Pedro Duarte Silva <psilva@ucp.pt>
Diff between MAINT.Data versions 2.7.3 dated 2026-01-08 and 2.7.4 dated 2026-01-14
CHANGELOG | 4 ++-- DESCRIPTION | 8 ++++---- MD5 | 8 ++++---- R/fasttle.R | 1 + man/MAINT.Data-package.Rd | 4 ++-- 5 files changed, 13 insertions(+), 12 deletions(-)
Title: Block Forests: Random Forests for Blocks of Clinical and Omics
Covariate Data
Description: A random forest variant 'block forest' ('BlockForest') tailored to the
prediction of binary, survival and continuous outcomes using block-structured
covariate data, for example, clinical covariates plus measurements of a certain
omics data type or multi-omics data, that is, data for which measurements of
different types of omics data and/or clinical data for each patient exist. Examples
of different omics data types include gene expression measurements, mutation data
and copy number variation measurements.
Block forest are presented in Hornung & Wright (2019). The package includes four
other random forest variants for multi-omics data: 'RandomBlock', 'BlockVarSel',
'VarProb', and 'SplitWeights'. These were also considered in Hornung & Wright (2019),
but performed worse than block forest in their comparison study based on 20 real
multi-omics data sets. Therefore, we recommend to use block forest ('BlockForest')
in applications. The other random forest variants can, however, be c [...truncated...]
Author: Marvin N. Wright [aut, cre],
Roman Hornung [aut]
Maintainer: Marvin N. Wright <cran@wrig.de>
Diff between blockForest versions 0.2.6 dated 2023-03-31 and 0.2.7 dated 2026-01-14
DESCRIPTION | 21 +++++++++++++-------- MD5 | 14 +++++++------- R/blockForest.R | 5 ++++- R/predict.R | 2 +- build/partial.rdb |binary man/blockForest.Rd | 3 +++ src/utility.h | 8 ++++---- tests/testthat.R | 2 +- 8 files changed, 33 insertions(+), 22 deletions(-)
Title: A Simple S3 Class for Representing Vectors of Binary Data
('BLOBS')
Description: R's raw vector is useful for storing a single binary object.
What if you want to put a vector of them in a data frame? The 'blob'
package provides the blob object, a list of raw vectors, suitable for
use as a column in data frame.
Author: Hadley Wickham [aut],
Kirill Mueller [cre],
RStudio [cph, fnd]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between blob versions 1.2.4 dated 2023-03-17 and 1.3.0 dated 2026-01-14
DESCRIPTION | 11 ++-- MD5 | 32 ++++++------ NEWS.md | 15 +++++ R/blob-package.R |only R/blob.R | 5 - R/cast.R | 4 + R/coerce.R | 4 + R/compat-lifecycle.R | 41 +++++++++------ R/format.R | 12 +++- R/util.R | 6 +- README.md | 78 +++++++++++++++++------------ man/blob-package.Rd |only tests/testthat.R | 8 +++ tests/testthat/test-accessors.R | 98 +++++++++++++++++++++++++++++++++---- tests/testthat/test-cast.R | 12 +++- tests/testthat/test-construction.R | 2 tests/testthat/test-format.R | 2 tests/testthat/test-missing.R | 2 18 files changed, 232 insertions(+), 100 deletions(-)
More information about bayesDiagnostics at CRAN
Permanent link
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-01-19 4.2.0
2020-06-02 4.1.3
2019-10-11 4.1.0
2019-06-28 4.0.6
2019-04-18 4.0.0
2018-02-20 3.3.0
2017-04-29 3.2.0
2016-09-16 3.1.0
2016-04-01 3.0.0
2015-05-31 2.2.0
2015-02-05 2.1.1
2015-01-12 2.1.0
Title: Causal Analysis of Observational Time-to-Event Data
Description: Implements target trial emulation methods to apply randomized
clinical trial design and analysis in an observational setting. Using
marginal structural models, it can estimate intention-to-treat and
per-protocol effects in emulated trials using electronic health
records. A description and application of the method can be found in
Danaei et al (2013) <doi:10.1177/0962280211403603>.
Author: Isaac Gravestock [aut, cre] ,
Li Su [aut],
Roonak Rezvani [aut] ,
Julia Moesch [aut],
Medical Research Council [fnd],
F. Hoffmann-La Roche AG [cph, fnd]
Maintainer: Isaac Gravestock <isaac.gravestock@roche.com>
Diff between TrialEmulation versions 0.0.4.8 dated 2025-11-19 and 0.0.4.9 dated 2026-01-14
DESCRIPTION | 8 - MD5 | 36 +++--- NAMESPACE | 1 NEWS.md | 4 R/initiators.R | 9 - R/lr_utils.R | 13 -- build/vignette.rds |binary inst/doc/Getting-Started.html | 188 ++++++++++++++++----------------- inst/doc/new-interface.Rmd | 4 inst/doc/new-interface.html | 17 +- man/data_preparation.Rd | 8 - man/initiators.Rd | 8 - man/trial_msm.Rd | 8 - tests/testthat/_snaps/data_utils.md | 34 +---- tests/testthat/test-data_preparation.R | 3 tests/testthat/test-data_utils.R | 3 tests/testthat/test-lr_utils.R | 26 ---- tests/testthat/test-modelling.R | 32 +---- vignettes/new-interface.Rmd | 4 19 files changed, 165 insertions(+), 241 deletions(-)
More information about TrialEmulation at CRAN
Permanent link
Title: Efficient Implementation of K-Means++ Algorithm
Description: Efficient implementation of K-Means++ algorithm. For more
information see (1) "kmeans++ the advantages of the k-means++
algorithm" by David Arthur and Sergei Vassilvitskii (2007),
Proceedings of the eighteenth annual ACM-SIAM symposium on Discrete
algorithms, Society for Industrial and Applied Mathematics,
Philadelphia, PA, USA, pp. 1027-1035, and (2) "The Effectiveness of
Lloyd-Type Methods for the k-Means Problem" by Rafail Ostrovsky, Yuval
Rabani, Leonard J. Schulman and Chaitanya Swamy
<doi:10.1145/2395116.2395117>.
Author: Aviezer Lifshitz [aut, cre],
Amos Tanay [aut],
Weizmann Institute of Science [cph]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between tglkmeans versions 0.5.5 dated 2024-05-15 and 0.5.8 dated 2026-01-14
tglkmeans-0.5.5/tglkmeans/src/Makevars |only tglkmeans-0.5.8/tglkmeans/DESCRIPTION | 15 tglkmeans-0.5.8/tglkmeans/MD5 | 25 tglkmeans-0.5.8/tglkmeans/NEWS.md | 12 tglkmeans-0.5.8/tglkmeans/R/TGL_kmeans.R | 11 tglkmeans-0.5.8/tglkmeans/R/intra_clustering.R | 30 - tglkmeans-0.5.8/tglkmeans/R/zzz.R | 4 tglkmeans-0.5.8/tglkmeans/build/partial.rdb |binary tglkmeans-0.5.8/tglkmeans/build/vignette.rds |binary tglkmeans-0.5.8/tglkmeans/configure |only tglkmeans-0.5.8/tglkmeans/inst/doc/usage.html | 338 ++++++------- tglkmeans-0.5.8/tglkmeans/man/TGL_kmeans.Rd | 3 tglkmeans-0.5.8/tglkmeans/man/TGL_kmeans_tidy.Rd | 3 tglkmeans-0.5.8/tglkmeans/src/Makevars.in |only tglkmeans-0.5.8/tglkmeans/tests/testthat/test-clustering.R | 21 15 files changed, 246 insertions(+), 216 deletions(-)
Title: Integration Unit Tests for Pharmacoepidemiological Studies
Description: An R interface to load testing data in the 'OMOP' Common Data Model ('CDM'). An input file, csv or xlsx, can be converted to a 'CDMConnector' object. This object can be used to execute and test studies that use the 'CDM' <https://www.ohdsi.org/data-standardization/>.
Author: Cesar Barboza [aut] ,
Ioanna Nika [aut],
Ger Inberg [aut, cre] ,
Adam Black [aut]
Maintainer: Ger Inberg <g.inberg@erasmusmc.nl>
Diff between TestGenerator versions 0.4.0 dated 2025-05-27 and 0.5.0 dated 2026-01-14
DESCRIPTION | 14 MD5 | 15 NEWS.md | 4 R/download.R | 2 R/patients.R | 49 +- inst/cdmTableSpecifications/emptycdm_5.4/Archive.zip |only inst/testCases/test.json | 344 ------------------- man/checkTablesColumns.Rd |only tests/testthat/test-patients.R | 24 + tests/testthat/test_cdm_data_uppercase.xlsx |only 10 files changed, 79 insertions(+), 373 deletions(-)
Title: Accessing and Validating Marine Environmental Data from 'SHARK'
and Related Databases
Description: Provides functions to retrieve, process, analyze, and
quality-control marine physical, chemical, and biological data. The
main focus is on Swedish monitoring data available through the 'SHARK'
database <https://shark.smhi.se/en/>, with additional API support for 'Nordic
Microalgae' <https://nordicmicroalgae.org/>, 'Dyntaxa'
<https://artfakta.se/>, World Register of Marine Species ('WoRMS') <https://www.marinespecies.org>,
'AlgaeBase' <https://www.algaebase.org>, OBIS 'xylookup' web service
<https://iobis.github.io/xylookup/> and Intergovernmental Oceanographic Commission (IOC) -
UNESCO databases on harmful algae <https://www.marinespecies.org/hab/> and toxins
<https://toxins.hais.ioc-unesco.org/>.
Author: Markus Lindh [aut] ,
Anders Torstensson [aut, cre] ,
Mikael Hedblom [ctb] ,
Bengt Karlson [ctb] ,
SHARK [cph],
SBDI [fnd]
Maintainer: Anders Torstensson <anders.torstensson@smhi.se>
Diff between SHARK4R versions 1.0.2 dated 2025-12-12 and 1.0.3 dated 2026-01-14
SHARK4R-1.0.2/SHARK4R/inst/shiny/shark-qc/rsconnect |only SHARK4R-1.0.3/SHARK4R/DESCRIPTION | 6 SHARK4R-1.0.3/SHARK4R/LICENSE | 4 SHARK4R-1.0.3/SHARK4R/LICENSE.note | 70 SHARK4R-1.0.3/SHARK4R/MD5 | 509 - SHARK4R-1.0.3/SHARK4R/NAMESPACE | 2 SHARK4R-1.0.3/SHARK4R/NEWS.md | 284 SHARK4R-1.0.3/SHARK4R/R/SHARK4R-package.R | 248 SHARK4R-1.0.3/SHARK4R/R/algaebase_api_functions.R | 2257 ++--- SHARK4R-1.0.3/SHARK4R/R/check_codes.R | 324 SHARK4R-1.0.3/SHARK4R/R/check_depth.R | 530 - SHARK4R-1.0.3/SHARK4R/R/check_fields.R | 2072 ++--- SHARK4R-1.0.3/SHARK4R/R/check_logical.R | 1468 +-- SHARK4R-1.0.3/SHARK4R/R/check_onland.R | 374 SHARK4R-1.0.3/SHARK4R/R/check_outliers.R | 1434 +-- SHARK4R-1.0.3/SHARK4R/R/check_stations.R | 1018 +- SHARK4R-1.0.3/SHARK4R/R/defunct.R | 248 SHARK4R-1.0.3/SHARK4R/R/dyntaxa_api_functions.R | 3930 +++++----- SHARK4R-1.0.3/SHARK4R/R/hab_api_functions.R | 539 - SHARK4R-1.0.3/SHARK4R/R/iRfcb_functions.R | 403 - SHARK4R-1.0.3/SHARK4R/R/ifcb_is_near_land.R | 146 SHARK4R-1.0.3/SHARK4R/R/ifcb_which_basin.R | 100 SHARK4R-1.0.3/SHARK4R/R/nua_api_functions.R | 764 - SHARK4R-1.0.3/SHARK4R/R/plankton_toolbox.R | 424 - SHARK4R-1.0.3/SHARK4R/R/plot_map_leaflet.R | 174 SHARK4R-1.0.3/SHARK4R/R/read_delivery_template.R | 566 - SHARK4R-1.0.3/SHARK4R/R/run_qc_app.R | 130 SHARK4R-1.0.3/SHARK4R/R/scatterplot.R | 388 SHARK4R-1.0.3/SHARK4R/R/shark_api_functions.R | 2306 ++--- SHARK4R-1.0.3/SHARK4R/R/shark_read.R | 612 - SHARK4R-1.0.3/SHARK4R/R/util.R | 1356 +-- SHARK4R-1.0.3/SHARK4R/R/worms_api_functions.R | 2666 +++--- SHARK4R-1.0.3/SHARK4R/R/xylookup.R | 290 SHARK4R-1.0.3/SHARK4R/R/zzz.R | 710 - SHARK4R-1.0.3/SHARK4R/README.md | 144 SHARK4R-1.0.3/SHARK4R/build/vignette.rds |binary SHARK4R-1.0.3/SHARK4R/inst/CITATION | 34 SHARK4R-1.0.3/SHARK4R/inst/WORDLIST | 317 SHARK4R-1.0.3/SHARK4R/inst/doc/quality_control.R | 223 SHARK4R-1.0.3/SHARK4R/inst/doc/quality_control.Rmd | 556 - SHARK4R-1.0.3/SHARK4R/inst/doc/quality_control.html | 1398 +-- SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_hab_data.R | 69 SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_hab_data.Rmd | 162 SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_hab_data.html | 980 +- SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_nordic_microalgae_data.R | 129 SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_nordic_microalgae_data.Rmd | 260 SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_nordic_microalgae_data.html | 1174 +- SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_shark_data.R | 107 SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_shark_data.Rmd | 200 SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_shark_data.html | 1009 +- SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_worms_data.R | 342 SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_worms_data.Rmd | 472 - SHARK4R-1.0.3/SHARK4R/inst/doc/retrieve_worms_data.html | 1348 +-- SHARK4R-1.0.3/SHARK4R/inst/shiny/shark-qc/global.R | 28 SHARK4R-1.0.3/SHARK4R/inst/shiny/shark-qc/helpers.R | 52 SHARK4R-1.0.3/SHARK4R/inst/shiny/shark-qc/report.Rmd | 484 - SHARK4R-1.0.3/SHARK4R/inst/shiny/shark-qc/server.R | 1802 ++-- SHARK4R-1.0.3/SHARK4R/inst/shiny/shark-qc/ui.R | 660 - SHARK4R-1.0.3/SHARK4R/man/SHARK4R-package.Rd | 78 SHARK4R-1.0.3/SHARK4R/man/add_worms_taxonomy.Rd | 118 SHARK4R-1.0.3/SHARK4R/man/assign_phytoplankton_group.Rd | 222 SHARK4R-1.0.3/SHARK4R/man/check_Bacterioplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_Chlorophyll.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_Epibenthos.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_EpibenthosDropvideo.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_GreySeal.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_HarbourPorpoise.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_HarbourSeal.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_PhysicalChemical.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_Phytoplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_Picoplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_PrimaryProduction.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_RingedSeal.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_SealPathology.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_Sedimentation.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_Zoobenthos.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_Zooplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_bacterial_carbon.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_bacterial_concentration.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_bacterial_production.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_chlorophyll_conc.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_code_proj.Rd | 62 SHARK4R-1.0.3/SHARK4R/man/check_codes.Rd | 110 SHARK4R-1.0.3/SHARK4R/man/check_datatype.Rd | 98 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Bacterioplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Chlorophyll.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Epibenthos.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_EpibenthosDropvideo.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_GreySeal.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_HarbourPorpoise.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_HarbourSeal.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_PhysicalChemical.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Phytoplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Picoplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_PrimaryProduction.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_RingedSeal.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_SealPathology.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Sedimentation.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Zoobenthos.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_deliv_Zooplankton.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_depth.Rd | 226 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_abundclass_logical.Rd | 56 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_counted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_cover_logical.Rd | 48 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_coverclass_logical.Rd | 56 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_coverpercent_logical.Rd | 56 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_dryweight.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_sedimentdepos_logical.Rd | 56 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_specdistr_maxdepth.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_specdistr_mindepth.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_epibenthos_totcover_logical.Rd | 56 SHARK4R-1.0.3/SHARK4R/man/check_fields.Rd | 284 SHARK4R-1.0.3/SHARK4R/man/check_greyseal_counted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_harbourseal_counted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_harbporp_positivemin.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_logical_parameter.Rd | 118 SHARK4R-1.0.3/SHARK4R/man/check_nominal_station.Rd | 86 SHARK4R-1.0.3/SHARK4R/man/check_onland.Rd | 184 SHARK4R-1.0.3/SHARK4R/man/check_outliers.Rd | 236 SHARK4R-1.0.3/SHARK4R/man/check_parameter_rules.Rd | 154 SHARK4R-1.0.3/SHARK4R/man/check_phytoplankton_abund.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_phytoplankton_biovol.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_phytoplankton_carbon.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_phytoplankton_counted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_picoplankton_abundance.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_picoplankton_biovol.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_picoplankton_carbon.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_picoplankton_counted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_primaryproduction_carbonprod.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_primaryproduction_carbonprod_hour.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_primaryproduction_carbonprodlight.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_ringedseal_calccounted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_setup.Rd | 100 SHARK4R-1.0.3/SHARK4R/man/check_station_distance.Rd | 216 SHARK4R-1.0.3/SHARK4R/man/check_value_logical.Rd | 80 SHARK4R-1.0.3/SHARK4R/man/check_zero_positions.Rd | 106 SHARK4R-1.0.3/SHARK4R/man/check_zero_value.Rd | 74 SHARK4R-1.0.3/SHARK4R/man/check_zoobenthos_BQIm.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zoobenthos_BQIm_logical.Rd | 48 SHARK4R-1.0.3/SHARK4R/man/check_zoobenthos_abund.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zoobenthos_counted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zoobenthos_wetweight.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zoobenthos_wetweight_logical.Rd | 56 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_abund.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_carbon.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_counted.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_length_mean.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_length_median.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_wetweight.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_wetweight_area.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/check_zooplankton_wetweight_volume.Rd | 42 SHARK4R-1.0.3/SHARK4R/man/clean_shark4r_cache.Rd | 100 SHARK4R-1.0.3/SHARK4R/man/construct_dyntaxa_table.Rd | 192 SHARK4R-1.0.3/SHARK4R/man/convert_ddmm_to_dd.Rd | 74 SHARK4R-1.0.3/SHARK4R/man/defunct.Rd | 36 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-archived.svg | 42 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-defunct.svg | 42 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-deprecated.svg | 42 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-experimental.svg | 42 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-maturing.svg | 42 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-questioning.svg | 42 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-soft-deprecated.svg | 42 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-stable.svg | 58 SHARK4R-1.0.3/SHARK4R/man/figures/lifecycle-superseded.svg | 42 SHARK4R-1.0.3/SHARK4R/man/find_required_fields.Rd | 140 SHARK4R-1.0.3/SHARK4R/man/get_algaebase_genus.Rd | 168 SHARK4R-1.0.3/SHARK4R/man/get_algaebase_species.Rd | 184 SHARK4R-1.0.3/SHARK4R/man/get_delivery_template.Rd | 176 SHARK4R-1.0.3/SHARK4R/man/get_dyntaxa_dwca.Rd | 146 SHARK4R-1.0.3/SHARK4R/man/get_dyntaxa_parent_ids.Rd | 124 SHARK4R-1.0.3/SHARK4R/man/get_dyntaxa_records.Rd | 114 SHARK4R-1.0.3/SHARK4R/man/get_hab_list.Rd | 184 SHARK4R-1.0.3/SHARK4R/man/get_nomp_list.Rd | 116 SHARK4R-1.0.3/SHARK4R/man/get_nua_external_links.Rd | 92 SHARK4R-1.0.3/SHARK4R/man/get_nua_harmfulness.Rd | 90 SHARK4R-1.0.3/SHARK4R/man/get_nua_media_links.Rd | 78 SHARK4R-1.0.3/SHARK4R/man/get_nua_taxa.Rd | 70 SHARK4R-1.0.3/SHARK4R/man/get_peg_list.Rd | 102 SHARK4R-1.0.3/SHARK4R/man/get_shark_codes.Rd | 106 SHARK4R-1.0.3/SHARK4R/man/get_shark_data.Rd | 462 - SHARK4R-1.0.3/SHARK4R/man/get_shark_datasets.Rd | 190 SHARK4R-1.0.3/SHARK4R/man/get_shark_options.Rd | 96 SHARK4R-1.0.3/SHARK4R/man/get_shark_statistics.Rd | 184 SHARK4R-1.0.3/SHARK4R/man/get_shark_table_counts.Rd | 292 SHARK4R-1.0.3/SHARK4R/man/get_toxin_list.Rd | 64 SHARK4R-1.0.3/SHARK4R/man/get_worms_classification.Rd | 164 SHARK4R-1.0.3/SHARK4R/man/get_worms_records.Rd | 106 SHARK4R-1.0.3/SHARK4R/man/get_worms_records_name.Rd | 122 SHARK4R-1.0.3/SHARK4R/man/get_worms_taxonomy_tree.Rd | 222 SHARK4R-1.0.3/SHARK4R/man/ifcb_is_near_land.Rd | 152 SHARK4R-1.0.3/SHARK4R/man/ifcb_which_basin.Rd | 104 SHARK4R-1.0.3/SHARK4R/man/is_in_dyntaxa.Rd | 154 SHARK4R-1.0.3/SHARK4R/man/load_shark4r_fields.Rd | 118 SHARK4R-1.0.3/SHARK4R/man/load_shark4r_stats.Rd | 94 SHARK4R-1.0.3/SHARK4R/man/load_station_bundle.Rd | 40 SHARK4R-1.0.3/SHARK4R/man/lookup_xy.Rd | 158 SHARK4R-1.0.3/SHARK4R/man/match_algaebase.Rd | 232 SHARK4R-1.0.3/SHARK4R/man/match_algaebase_genus.Rd | 158 SHARK4R-1.0.3/SHARK4R/man/match_algaebase_species.Rd | 174 SHARK4R-1.0.3/SHARK4R/man/match_algaebase_taxa.Rd | 228 SHARK4R-1.0.3/SHARK4R/man/match_dyntaxa.Rd | 80 SHARK4R-1.0.3/SHARK4R/man/match_dyntaxa_taxa.Rd | 160 SHARK4R-1.0.3/SHARK4R/man/match_station.Rd | 122 SHARK4R-1.0.3/SHARK4R/man/match_taxon_name.Rd | 170 SHARK4R-1.0.3/SHARK4R/man/match_worms_taxa.Rd | 162 SHARK4R-1.0.3/SHARK4R/man/match_wormstaxa.Rd | 54 SHARK4R-1.0.3/SHARK4R/man/nominal_station.Rd | 90 SHARK4R-1.0.3/SHARK4R/man/parse_scientific_names.Rd | 116 SHARK4R-1.0.3/SHARK4R/man/plot_map_leaflet.Rd | 106 SHARK4R-1.0.3/SHARK4R/man/plot_map_leaflet_deliv.Rd | 44 SHARK4R-1.0.3/SHARK4R/man/positions_are_near_land.Rd | 177 SHARK4R-1.0.3/SHARK4R/man/read_ptbx.Rd | 100 SHARK4R-1.0.3/SHARK4R/man/read_shark.Rd | 130 SHARK4R-1.0.3/SHARK4R/man/read_shark_deliv.Rd | 84 SHARK4R-1.0.3/SHARK4R/man/run_qc_app.Rd | 74 SHARK4R-1.0.3/SHARK4R/man/scatterplot.Rd | 166 SHARK4R-1.0.3/SHARK4R/man/shark_read.Rd | 78 SHARK4R-1.0.3/SHARK4R/man/shark_read_deliv.Rd | 50 SHARK4R-1.0.3/SHARK4R/man/shark_read_deliv_xls.Rd | 52 SHARK4R-1.0.3/SHARK4R/man/shark_read_zip.Rd | 76 SHARK4R-1.0.3/SHARK4R/man/translate_shark_datatype.Rd | 54 SHARK4R-1.0.3/SHARK4R/man/update_dyntaxa_taxonomy.Rd | 130 SHARK4R-1.0.3/SHARK4R/man/update_worms_taxonomy.Rd | 76 SHARK4R-1.0.3/SHARK4R/man/which_basin.Rd | 100 SHARK4R-1.0.3/SHARK4R/tests/spelling.R | 6 SHARK4R-1.0.3/SHARK4R/tests/testthat.R | 24 SHARK4R-1.0.3/SHARK4R/tests/testthat/helper.R | 316 SHARK4R-1.0.3/SHARK4R/tests/testthat/setup-cache.R | 4 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-algaebase_api_functions.R | 102 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-check_codes.R | 56 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-check_depth.R | 240 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-check_fields.R | 560 - SHARK4R-1.0.3/SHARK4R/tests/testthat/test-check_logical.R | 1350 +-- SHARK4R-1.0.3/SHARK4R/tests/testthat/test-check_onland.R | 154 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-check_outliers.R | 526 - SHARK4R-1.0.3/SHARK4R/tests/testthat/test-check_stations.R | 802 +- SHARK4R-1.0.3/SHARK4R/tests/testthat/test-defunct.R | 64 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-dyntaxa_api_functions.R | 446 - SHARK4R-1.0.3/SHARK4R/tests/testthat/test-hab_api_functions.R | 306 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-iRfcb_functions.R | 289 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-nua_api_functions.R | 92 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-plankton_toolbox.R | 378 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-plot_map_leaflet.R | 124 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-read_delivery_template.R | 134 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-run_qc_app.R | 32 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-scatterplot.R | 246 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-shark_api_functions.R | 514 - SHARK4R-1.0.3/SHARK4R/tests/testthat/test-shark_read.R | 292 SHARK4R-1.0.3/SHARK4R/tests/testthat/test-util.R | 538 - SHARK4R-1.0.3/SHARK4R/tests/testthat/test-worms_api_functions.R | 482 - SHARK4R-1.0.3/SHARK4R/tests/testthat/test-xylookup.R | 246 SHARK4R-1.0.3/SHARK4R/vignettes/quality_control.Rmd | 556 - SHARK4R-1.0.3/SHARK4R/vignettes/retrieve_hab_data.Rmd | 162 SHARK4R-1.0.3/SHARK4R/vignettes/retrieve_nordic_microalgae_data.Rmd | 260 SHARK4R-1.0.3/SHARK4R/vignettes/retrieve_shark_data.Rmd | 200 SHARK4R-1.0.3/SHARK4R/vignettes/retrieve_worms_data.Rmd | 472 - 256 files changed, 31546 insertions(+), 31178 deletions(-)
Title: Ex Post Survey Data Harmonization
Description: Assist in reproducible retrospective (ex-post) harmonization
of data, particularly individual level survey data, by providing tools
for organizing metadata, standardizing the coding of variables, and
variable names and value labels, including missing values, and
documenting the data transformations, with the help of comprehensive
s3 classes.
Author: Daniel Antal [aut, cre] ,
Marta Kolczynska [ctb]
Maintainer: Daniel Antal <daniel.antal@dataobservatory.eu>
Diff between retroharmonize versions 0.2.0 dated 2021-11-02 and 0.2.7 dated 2026-01-14
retroharmonize-0.2.0/retroharmonize/R/document_waves.R |only retroharmonize-0.2.0/retroharmonize/R/harmonize_waves.R |only retroharmonize-0.2.0/retroharmonize/R/merge_waves.R |only retroharmonize-0.2.0/retroharmonize/R/subset_save_surveys.R |only retroharmonize-0.2.0/retroharmonize/R/subset_waves.R |only retroharmonize-0.2.0/retroharmonize/R/suggest_var_names.R |only retroharmonize-0.2.0/retroharmonize/inst/doc/arabbarometer.R |only retroharmonize-0.2.0/retroharmonize/inst/doc/arabbarometer.Rmd |only retroharmonize-0.2.0/retroharmonize/inst/doc/arabbarometer.html |only retroharmonize-0.2.0/retroharmonize/inst/doc/eurobarometer.R |only retroharmonize-0.2.0/retroharmonize/inst/doc/eurobarometer.Rmd |only retroharmonize-0.2.0/retroharmonize/inst/doc/eurobarometer.html |only retroharmonize-0.2.0/retroharmonize/man/as_factor.Rd |only retroharmonize-0.2.0/retroharmonize/man/document_waves.Rd |only retroharmonize-0.2.0/retroharmonize/man/figures/README-pressure-1.png |only retroharmonize-0.2.0/retroharmonize/man/harmonize_waves.Rd |only retroharmonize-0.2.0/retroharmonize/man/merge_waves.Rd |only retroharmonize-0.2.0/retroharmonize/man/subset_save_surveys.Rd |only retroharmonize-0.2.0/retroharmonize/man/subset_waves.Rd |only retroharmonize-0.2.0/retroharmonize/man/suggest_permanent_names.Rd |only retroharmonize-0.2.0/retroharmonize/man/suggest_var_names.Rd |only retroharmonize-0.2.0/retroharmonize/tests/testthat/test-document_waves.R |only retroharmonize-0.2.0/retroharmonize/tests/testthat/test-harmonize_var_names__subset_waves.R |only retroharmonize-0.2.0/retroharmonize/tests/testthat/test-harmonize_waves.R |only retroharmonize-0.2.0/retroharmonize/tests/testthat/test-merge_waves.R |only retroharmonize-0.2.0/retroharmonize/tests/testthat/test-suggest_var_names.R |only retroharmonize-0.2.0/retroharmonize/vignettes/arabbarometer.Rmd |only retroharmonize-0.2.0/retroharmonize/vignettes/eurobarometer.Rmd |only retroharmonize-0.2.7/retroharmonize/DESCRIPTION | 58 retroharmonize-0.2.7/retroharmonize/MD5 | 274 +- retroharmonize-0.2.7/retroharmonize/NAMESPACE | 56 retroharmonize-0.2.7/retroharmonize/NEWS.md | 21 retroharmonize-0.2.7/retroharmonize/R/as_labelled_spss_survey.R | 30 retroharmonize-0.2.7/retroharmonize/R/assertions.R | 178 - retroharmonize-0.2.7/retroharmonize/R/collect_val_labels.R | 43 retroharmonize-0.2.7/retroharmonize/R/concatenate.R | 126 - retroharmonize-0.2.7/retroharmonize/R/create_codebook.R | 422 ++- retroharmonize-0.2.7/retroharmonize/R/crosswalk.R |only retroharmonize-0.2.7/retroharmonize/R/document_survey_item.R | 115 retroharmonize-0.2.7/retroharmonize/R/document_surveys.R |only retroharmonize-0.2.7/retroharmonize/R/harmonize_na_values.R | 147 - retroharmonize-0.2.7/retroharmonize/R/harmonize_survey_values.R |only retroharmonize-0.2.7/retroharmonize/R/harmonize_survey_variables.R |only retroharmonize-0.2.7/retroharmonize/R/harmonize_values.R | 436 +-- retroharmonize-0.2.7/retroharmonize/R/harmonize_var_names.R | 105 retroharmonize-0.2.7/retroharmonize/R/label_harmonize.R | 151 - retroharmonize-0.2.7/retroharmonize/R/labelled_spss_survey.R | 1250 +++++++--- retroharmonize-0.2.7/retroharmonize/R/labelled_spss_survey_arithmetic.R |only retroharmonize-0.2.7/retroharmonize/R/labelled_spss_survey_coercion.R |only retroharmonize-0.2.7/retroharmonize/R/merge_surveys.R |only retroharmonize-0.2.7/retroharmonize/R/metadata_create.R | 356 +- retroharmonize-0.2.7/retroharmonize/R/na_range_to_values.R | 114 retroharmonize-0.2.7/retroharmonize/R/pull_survey.R | 66 retroharmonize-0.2.7/retroharmonize/R/read_csv.R |only retroharmonize-0.2.7/retroharmonize/R/read_dta.R | 177 - retroharmonize-0.2.7/retroharmonize/R/read_rds.R | 101 retroharmonize-0.2.7/retroharmonize/R/read_spss.R | 206 - retroharmonize-0.2.7/retroharmonize/R/read_surveys.R | 223 + retroharmonize-0.2.7/retroharmonize/R/retroharmonize-package.R |only retroharmonize-0.2.7/retroharmonize/R/retroharmonize.R | 80 retroharmonize-0.2.7/retroharmonize/R/subset_surveys.R |only retroharmonize-0.2.7/retroharmonize/R/survey.R | 169 - retroharmonize-0.2.7/retroharmonize/R/survey_df.R |only retroharmonize-0.2.7/retroharmonize/R/utils-here.R | 20 retroharmonize-0.2.7/retroharmonize/R/utils-read_csv.R |only retroharmonize-0.2.7/retroharmonize/R/utils.R | 42 retroharmonize-0.2.7/retroharmonize/R/valid_file_info.R |only retroharmonize-0.2.7/retroharmonize/README.md | 271 +- retroharmonize-0.2.7/retroharmonize/build/vignette.rds |binary retroharmonize-0.2.7/retroharmonize/inst/WORDLIST | 76 retroharmonize-0.2.7/retroharmonize/inst/doc/afrobarometer.R | 193 - retroharmonize-0.2.7/retroharmonize/inst/doc/afrobarometer.Rmd | 159 - retroharmonize-0.2.7/retroharmonize/inst/doc/afrobarometer.html | 997 +++++-- retroharmonize-0.2.7/retroharmonize/inst/doc/codelist.R |only retroharmonize-0.2.7/retroharmonize/inst/doc/codelist.Rmd |only retroharmonize-0.2.7/retroharmonize/inst/doc/codelist.html |only retroharmonize-0.2.7/retroharmonize/inst/doc/concept.R |only retroharmonize-0.2.7/retroharmonize/inst/doc/concept.Rmd |only retroharmonize-0.2.7/retroharmonize/inst/doc/concept.html |only retroharmonize-0.2.7/retroharmonize/inst/doc/crosswalk.R |only retroharmonize-0.2.7/retroharmonize/inst/doc/crosswalk.Rmd |only retroharmonize-0.2.7/retroharmonize/inst/doc/crosswalk.html |only retroharmonize-0.2.7/retroharmonize/inst/doc/documentation.R |only retroharmonize-0.2.7/retroharmonize/inst/doc/documentation.Rmd |only retroharmonize-0.2.7/retroharmonize/inst/doc/documentation.html |only retroharmonize-0.2.7/retroharmonize/inst/doc/harmonize_labels.R | 194 - retroharmonize-0.2.7/retroharmonize/inst/doc/harmonize_labels.Rmd | 198 - 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More information about retroharmonize at CRAN
Permanent link
Title: Getting Bibliographic Records from 'OpenAlex' Database Using
'DSL' API
Description: A set of tools to extract bibliographic content from
'OpenAlex' database using API <https://docs.openalex.org>.
Author: Massimo Aria [aut, cre, cph] ,
Corrado Cuccurullo [ctb] ,
Trang Le [aut] ,
June Choe [aut]
Maintainer: Massimo Aria <aria@unina.it>
Diff between openalexR versions 3.0.0 dated 2026-01-10 and 3.0.1 dated 2026-01-14
DESCRIPTION | 6 +++--- MD5 | 14 +++++++------- NEWS.md | 3 +++ R/oa_fetch.R | 2 ++ R/utils.R | 2 +- README.md | 10 +++++----- man/oa_random.Rd | 2 ++ tests/testthat/test-oa_fetch.R | 2 ++ 8 files changed, 25 insertions(+), 16 deletions(-)
Title: Statistical Analysis of Monthly Background Checks of Gun
Purchases
Description: Statistical analysis of monthly background checks of gun purchases for the New York Times
story "What Drives Gun Sales: Terrorism, Obama and Calls for Restrictions" at
<https://www.nytimes.com/interactive/2015/12/10/us/gun-sales-terrorism-obama-restrictions.html>
is provided.
Author: Gregor Aisch [aut],
Josh Keller [aut],
Dirk Eddelbuettel [aut, cre]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between gunsales versions 0.1.2 dated 2017-01-30 and 0.1.3 dated 2026-01-14
DESCRIPTION | 29 ++- MD5 | 28 +-- NAMESPACE | 3 R/functions.R | 2 README.md | 15 + build/vignette.rds |binary data/alldata.RData |binary data/poptotal.RData |binary inst/doc/gunsales.R | 20 +- inst/doc/gunsales.Rmd | 6 inst/doc/gunsales.html | 394 ++++++++++++++++++++++++++++++++++++++++++------- man/analysis.Rd | 2 man/ggplot_gunsales.Rd | 2 man/plot_gunsales.Rd | 2 vignettes/gunsales.Rmd | 6 15 files changed, 404 insertions(+), 105 deletions(-)
Title: Counterfactual Explanations
Description: Modular and unified R6-based interface for counterfactual explanation methods.
The following methods are currently implemented: Burghmans et al. (2022) <doi:10.48550/arXiv.2104.07411>,
Dandl et al. (2020) <doi:10.1007/978-3-030-58112-1_31> and Wexler et al. (2019) <doi:10.1109/TVCG.2019.2934619>.
Optional extensions allow these methods to be applied to a variety of models and use cases.
Once generated, the counterfactuals can be analyzed and visualized by provided functionalities.
The package is described in detail in Dandl et al. (2025) <doi:10.18637/jss.v115.i09>.
Author: Susanne Dandl [aut, cre] ,
Andreas Hofheinz [aut],
Martin Binder [ctb],
Giuseppe Casalicchio [ctb]
Maintainer: Susanne Dandl <dandls.datascience@gmail.com>
Diff between counterfactuals versions 0.1.6 dated 2024-10-17 and 1.0.0 dated 2026-01-14
DESCRIPTION | 12 ++++---- MD5 | 48 ++++++++++++++++---------------- NEWS.md | 5 +++ R/CounterfactualMethod.R | 6 +++- R/Counterfactuals.R | 3 +- R/NICEClassif.R | 2 - R/NICERegr.R | 2 - R/WhatIfClassif.R | 6 ++-- R/WhatIfRegr.R | 6 ++-- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 32 +++++++++++++-------- inst/doc/how-to-add-new-cf-methods.html | 23 ++++++++------- inst/doc/introduction.html | 28 ++++++++++-------- inst/doc/other_models.html | 44 +++++++++++++++++------------ man/CounterfactualMethod.Rd | 3 ++ man/Counterfactuals.Rd | 4 ++ man/MOCClassif.Rd | 17 +++++------ man/MOCRegr.Rd | 17 +++++------ man/NICEClassif.Rd | 2 - man/NICERegr.Rd | 2 - man/RandomSearchClassif.Rd | 18 ++++++------ man/RandomSearchRegr.Rd | 18 ++++++------ man/WhatIfClassif.Rd | 6 ++-- man/WhatIfRegr.Rd | 6 ++-- 25 files changed, 176 insertions(+), 134 deletions(-)
More information about counterfactuals at CRAN
Permanent link
Title: Utility Functions and Development Tools for the Admiral Package
Family
Description: Utility functions to check data, variables and conditions for
functions used in 'admiral' and 'admiral' extension packages.
Additional utility helper functions to assist developers with
maintaining documentation, testing and general upkeep of 'admiral' and
'admiral' extension packages.
Author: Ben Straub [aut, cre],
Stefan Bundfuss [aut] ,
Arianna Cascone [aut] ,
Jeffrey Dickinson [aut],
Ross Farrugia [aut],
Fanny Gautier [aut],
Edoardo Mancini [aut] ,
Gordon Miller [aut],
Daniel Sjoberg [aut] ,
Stefan Thoma [aut] ,
F. Hoffmann-La Roche AG [...truncated...]
Maintainer: Ben Straub <ben.x.straub@gsk.com>
Diff between admiraldev versions 1.3.1 dated 2025-06-25 and 1.4.0 dated 2026-01-14
admiraldev-1.3.1/admiraldev/R/joins.R |only admiraldev-1.3.1/admiraldev/man/joins.Rd |only admiraldev-1.4.0/admiraldev/DESCRIPTION | 15 admiraldev-1.4.0/admiraldev/MD5 | 167 +-- admiraldev-1.4.0/admiraldev/NAMESPACE | 3 admiraldev-1.4.0/admiraldev/NEWS.md | 70 + admiraldev-1.4.0/admiraldev/R/assertions.R | 22 admiraldev-1.4.0/admiraldev/R/compat_friendly_type.R | 172 --- admiraldev-1.4.0/admiraldev/R/dev_utilities.R | 68 - admiraldev-1.4.0/admiraldev/R/is.R | 2 admiraldev-1.4.0/admiraldev/R/lifecycle_admiral.R | 17 admiraldev-1.4.0/admiraldev/R/process_set_values_to.R | 2 admiraldev-1.4.0/admiraldev/R/quo.R | 2 admiraldev-1.4.0/admiraldev/R/quote.R | 29 admiraldev-1.4.0/admiraldev/R/roclet_rdx.R | 13 admiraldev-1.4.0/admiraldev/R/warnings.R | 2 admiraldev-1.4.0/admiraldev/R/what.R | 39 admiraldev-1.4.0/admiraldev/README.md | 24 admiraldev-1.4.0/admiraldev/build/vignette.rds |binary admiraldev-1.4.0/admiraldev/inst/WORDLIST | 25 admiraldev-1.4.0/admiraldev/inst/doc/package_extensions.html | 8 admiraldev-1.4.0/admiraldev/inst/doc/rcmd_issues.html | 2 admiraldev-1.4.0/admiraldev/inst/doc/writing_custom_examples.R |only admiraldev-1.4.0/admiraldev/inst/doc/writing_custom_examples.Rmd |only admiraldev-1.4.0/admiraldev/inst/doc/writing_custom_examples.html |only admiraldev-1.4.0/admiraldev/inst/lintr |only admiraldev-1.4.0/admiraldev/man/add_suffix_to_vars.Rd | 2 admiraldev-1.4.0/admiraldev/man/admiraldev-package.Rd | 1 admiraldev-1.4.0/admiraldev/man/arg_name.Rd | 18 admiraldev-1.4.0/admiraldev/man/assert_atomic_vector.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_character_scalar.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_character_vector.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_data_frame.Rd | 11 admiraldev-1.4.0/admiraldev/man/assert_date_vector.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_expr.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_expr_list.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_filter_cond.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_function.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_integer_scalar.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_list_element.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_list_of.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_logical_scalar.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_named.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_numeric_vector.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_one_to_one.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_param_does_not_exist.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_s3_class.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_same_type.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_symbol.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_unit.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_vars.Rd | 2 admiraldev-1.4.0/admiraldev/man/assert_varval_list.Rd | 2 admiraldev-1.4.0/admiraldev/man/backquote.Rd | 3 admiraldev-1.4.0/admiraldev/man/contains_vars.Rd | 6 admiraldev-1.4.0/admiraldev/man/convert_dtm_to_dtc.Rd | 6 admiraldev-1.4.0/admiraldev/man/dquote.Rd | 3 admiraldev-1.4.0/admiraldev/man/enumerate.Rd | 22 admiraldev-1.4.0/admiraldev/man/expr_c.Rd | 2 admiraldev-1.4.0/admiraldev/man/extract_vars.Rd | 6 admiraldev-1.4.0/admiraldev/man/figures/gsk_logo.png |only admiraldev-1.4.0/admiraldev/man/figures/roche_logo.png |only admiraldev-1.4.0/admiraldev/man/filter_if.Rd | 6 admiraldev-1.4.0/admiraldev/man/friendly_type_of.Rd | 18 admiraldev-1.4.0/admiraldev/man/get_constant_vars.Rd | 2 admiraldev-1.4.0/admiraldev/man/get_dataset.Rd | 2 admiraldev-1.4.0/admiraldev/man/get_duplicates.Rd | 2 admiraldev-1.4.0/admiraldev/man/get_source_vars.Rd | 2 admiraldev-1.4.0/admiraldev/man/grapes-notin-grapes.Rd | 6 admiraldev-1.4.0/admiraldev/man/grapes-or-grapes.Rd | 18 admiraldev-1.4.0/admiraldev/man/is_auto.Rd | 2 admiraldev-1.4.0/admiraldev/man/is_order_vars.Rd | 2 admiraldev-1.4.0/admiraldev/man/is_valid_dtc.Rd | 2 admiraldev-1.4.0/admiraldev/man/replace_symbol_in_expr.Rd | 2 admiraldev-1.4.0/admiraldev/man/replace_values_by_names.Rd | 2 admiraldev-1.4.0/admiraldev/man/squote.Rd | 5 admiraldev-1.4.0/admiraldev/man/valid_time_units.Rd | 18 admiraldev-1.4.0/admiraldev/man/vars2chr.Rd | 8 admiraldev-1.4.0/admiraldev/man/what_is_it.Rd | 20 admiraldev-1.4.0/admiraldev/tests/testthat/_snaps/assertions.md | 113 +- admiraldev-1.4.0/admiraldev/tests/testthat/_snaps/dev_utilities.md |only admiraldev-1.4.0/admiraldev/tests/testthat/_snaps/roclet_rdx/test_class.Rd |only admiraldev-1.4.0/admiraldev/tests/testthat/fixtures/test_class.R |only admiraldev-1.4.0/admiraldev/tests/testthat/test-assertions.R | 446 +++++----- admiraldev-1.4.0/admiraldev/tests/testthat/test-compat_friendly_type.R | 104 -- admiraldev-1.4.0/admiraldev/tests/testthat/test-demo_fun.R |only admiraldev-1.4.0/admiraldev/tests/testthat/test-dev_utilities.R | 62 + admiraldev-1.4.0/admiraldev/tests/testthat/test-is.R | 6 admiraldev-1.4.0/admiraldev/tests/testthat/test-quote.R | 12 admiraldev-1.4.0/admiraldev/tests/testthat/test-roclet_rdx.R | 54 - admiraldev-1.4.0/admiraldev/tests/testthat/test-what.R | 48 - admiraldev-1.4.0/admiraldev/vignettes/writing_custom_examples.Rmd |only 91 files changed, 851 insertions(+), 917 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-09-09 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-16 1.2.0
2020-01-11 1.1.0
2019-04-11 1.0.0
2018-06-26 0.8.4
2017-09-14 0.8.0
2016-11-09 0.7.8
2016-08-25 0.7.6
2016-08-17 0.7.4
2016-08-03 0.7.2
2016-07-25 0.7.0
2016-01-07 0.6.0
2015-07-02 0.5.0
2015-05-01 0.4.0
2015-01-29 0.3.0
Title: Snow Profile Analysis for Snowpack and Avalanche Research
Description: Analysis and plotting tools for snow profile data produced from manual snowpack
observations and physical snowpack models. The functions in this package support snowpack
and avalanche research by reading various formats of data (including CAAML, SMET,
generic csv, and outputs from the snow cover model SNOWPACK), manipulate the data, and
produce graphics such as stratigraphy and time series profiles. Package developed by
the Simon Fraser University Avalanche Research Program <http://www.avalancheresearch.ca>.
Graphics apply visualization concepts from Horton, Nowak, and Haegeli (2020,
<doi:10.5194/nhess-20-1557-2020>).
Author: Pascal Haegeli [aut, cre],
Simon Horton [aut],
Florian Herla [aut],
SFU Avalanche Research Program [fnd]
Maintainer: Pascal Haegeli <pascal_haegeli@sfu.ca>
Diff between sarp.snowprofile versions 1.3.2 dated 2023-03-08 and 1.4.1 dated 2026-01-14
DESCRIPTION | 10 MD5 | 272 - NAMESPACE | 154 NEWS.md | 147 R/assignDatetags.R |only R/char2numAspect.R | 68 R/char2numHHI.R | 134 R/computeRTA.R | 416 - R/computeSLAB.R | 150 R/computeTSA.R | 296 - R/data-SPgroup.R | 36 R/data-SPmalformatted.R | 28 R/data-SPpairs.R | 46 R/data-SPtimeline.R | 30 R/data-SPtimeline_3hourly.R |only R/data-grainDict.R | 36 R/data-swisscode.R | 32 R/deriveDatetag.R | 285 - R/export.snowprofileCsv.R | 216 R/findPWL.R | 498 +- R/getColoursDensity.R | 112 R/getColoursGrainSize.R | 116 R/getColoursGrainType.R | 64 R/getColoursHardness.R | 112 R/getColoursLWC.R | 112 R/getColoursPercentage.R | 104 R/getColoursSnowTemp.R | 116 R/getColoursStability.R | 164 R/globalData.R | 2 R/importRDefaultPackages.R | 20 R/labelPWL.R | 40 R/numberOfPWLsPerVerticalLevel.R | 86 R/plot.snowprofile.R | 436 - R/plot.snowprofileSet.R | 971 ++-- R/rbind.snowprofile.R | 72 R/rbind.snowprofileSet.R | 94 R/readSmet.R | 196 R/sarp.snowprofile-package.R | 16 R/scanProfileDates.R | 114 R/setColoursGrainType.R | 198 R/simplifyGtypes.R | 76 R/snowprofile.R | 1090 ++-- R/snowprofileCaaml.R | 790 +-- R/snowprofileCsv.R | 314 - R/snowprofileCsv_advanced.R | 306 - R/snowprofileInstabilitySigns.R | 220 R/snowprofileLayers.R | 960 ++-- R/snowprofilePrf.R | 340 - R/snowprofilePro.R | 524 +- R/snowprofileSet.R | 96 R/snowprofileSno.R | 138 R/snowprofileTests.R | 260 - R/summary.snowprofile.R | 136 R/summary.snowprofileSet.R | 94 R/unobservedBasalLayer.R | 130 R/utils.R | 32 R/writePro.R |only R/writeSmet.R | 134 README.md | 32 build/partial.rdb |binary build/vignette.rds |binary data/SPtimeline_3hourly.rda |only inst/doc/sarp.snowprofile.R | 110 inst/doc/sarp.snowprofile.Rmd | 312 - inst/doc/sarp.snowprofile.html | 1344 +++--- inst/extdata/example.caaml | 7606 +++++++++++++++++----------------- inst/extdata/example.prf | 116 inst/extdata/example.pro | 298 - inst/extdata/example.smet | 52 inst/extdata/example.sno | 578 +- inst/extdata/example2.caaml | 552 +- inst/extdata/example_adv.csv | 28 man/SPgroup.Rd | 52 man/SPmalformatted.Rd | 42 man/SPpairs.Rd | 62 man/SPtimeline.Rd | 52 man/SPtimeline_3hourly.Rd |only man/assignDatetags.Rd |only man/char2numAspect.Rd | 62 man/char2numHHI.Rd | 74 man/codes_pro.Rd |only man/computeRTA.Rd | 144 man/computeSLABrho.Rd | 40 man/computeSLABrhogs.Rd | 48 man/computeTSA.Rd | 124 man/deriveBDate.Rd |only man/deriveDatetag.Rd | 117 man/export.snowprofileCsv.Rd | 158 man/findPWL.Rd | 314 - man/format_snowprofileLayers.Rd | 70 man/getColoursDensity.Rd | 66 man/getColoursGrainSize.Rd | 68 man/getColoursGrainType.Rd | 76 man/getColoursHardness.Rd | 68 man/getColoursLWC.Rd | 66 man/getColoursPercentage.Rd | 96 man/getColoursSnowTemp.Rd | 68 man/getColoursStability.Rd | 100 man/grainDict.Rd | 48 man/guessDatetagsSimple.Rd |only man/hasUnobservedBasalLayer.Rd | 34 man/importRDefaultPackages.Rd | 22 man/insertUnobservedBasalLayer.Rd | 56 man/is.snowprofile.Rd | 34 man/is.snowprofileInstabilitySigns.Rd | 34 man/is.snowprofileLayers.Rd | 34 man/is.snowprofileSet.Rd | 34 man/is.snowprofileTests.Rd | 34 man/new_snowprofile.Rd | 152 man/numberOfPWLsPerVerticalLevel.Rd | 64 man/plot.snowprofile.Rd | 183 man/plot.snowprofileSet.Rd | 392 - man/print.snowprofile.Rd | 72 man/rbind.snowprofile.Rd | 70 man/rbind.snowprofileSet.Rd | 80 man/readSmet.Rd | 67 man/reformat_snowprofile.Rd | 98 man/sarp.snowprofile-package.Rd | 66 man/scanProfileDates.Rd | 70 man/sd_sample_uncorrected.Rd | 52 man/setColoursGrainType.Rd | 114 man/simplifyGtypes.Rd | 66 man/snowprofile.Rd | 208 man/snowprofileCaaml.Rd | 112 man/snowprofileCsv.Rd | 216 man/snowprofileCsv_advanced.Rd | 112 man/snowprofileInstabilitySigns.Rd | 118 man/snowprofileLayers.Rd | 394 - man/snowprofilePrf.Rd | 106 man/snowprofilePro.Rd | 142 man/snowprofileSet.Rd | 40 man/snowprofileSno.Rd | 84 man/snowprofileTests.Rd | 132 man/sub-.snowprofileSet.Rd | 38 man/summary.snowprofile.Rd | 84 man/summary.snowprofileSet.Rd | 96 man/swisscode.Rd | 44 man/validate_snowprofile.Rd | 120 man/validate_snowprofileLayers.Rd | 40 man/writePro.Rd |only man/writeSmet.Rd | 76 vignettes/sarp.snowprofile.Rmd | 312 - 142 files changed, 14643 insertions(+), 14341 deletions(-)
More information about sarp.snowprofile at CRAN
Permanent link
Title: Provides Access to Salem Witchcraft Data
Description: Data related to the Salem Witch Trials
Datasets and tutorials documenting the witch accusations and trials
centered around Salem, Massachusetts in 1692. Originally assembled by
Richard B. Latner of Tulane University for his website
<https://www2.tulane.edu/~salem/index.html>. The data sets include information
on 152 accused witches, members of the Salem Village Committee,
signatories of petitions related to the events, and tax data for
Salem Village.
Author: Elin Waring [aut, cre],
Richard Latner [aut]
Maintainer: Elin Waring <elin.waring@gmail.com>
This is a re-admission after prior archival of version 0.2.0 dated 2020-11-05
Diff between salem versions 0.2.0 dated 2020-11-05 and 1.0.1 dated 2026-01-14
salem |only 1 file changed
Title: Query 'SWI'-'Prolog' from R
Description: This R package connects to SWI-Prolog, <https://www.swi-prolog.org/>, so that R can send deterministic and non-deterministic queries to prolog (consult, query/submit, once, findall).
Author: Matthias Gondan [aut, com, cre] ,
European Commission [fnd]
Maintainer: Matthias Gondan <Matthias.Gondan-Rochon@uibk.ac.at>
This is a re-admission after prior archival of version 0.9.23 dated 2025-05-19
Diff between rolog versions 0.9.23 dated 2025-05-19 and 0.9.24 dated 2026-01-14
DESCRIPTION | 8 +++--- MD5 | 16 ++++++------- NEWS.md | 4 +++ README.md | 13 +++++++---- build/vignette.rds |binary inst/doc/rolog.Rmd | 21 +++++++++--------- inst/doc/rolog.html | 49 ++++++++++++++++++++++-------------------- vignettes/bibliography.bibtex | 2 - vignettes/rolog.Rmd | 21 +++++++++--------- 9 files changed, 74 insertions(+), 60 deletions(-)
Title: Bottom-Up Proteomics and LiP-MS Quality Control and Data
Analysis Tools
Description: Useful functions and workflows for proteomics quality control and data analysis of both limited proteolysis-coupled mass spectrometry (LiP-MS) (Feng et. al. (2014) <doi:10.1038/nbt.2999>) and regular bottom-up proteomics experiments. Data generated with search tools such as 'Spectronaut', 'MaxQuant' and 'Proteome Discover' can be easily used due to flexibility of functions.
Author: Jan-Philipp Quast [aut, cre] ,
Dina Schuster [aut] ,
ETH Zurich [cph, fnd]
Maintainer: Jan-Philipp Quast <jpquast.software@gmail.com>
Diff between protti versions 0.9.1 dated 2024-10-21 and 1.0.0 dated 2026-01-14
DESCRIPTION | 21 MD5 | 195 +-- NAMESPACE | 4 NEWS.md | 37 R/analyse_functional_network.R | 2 R/assign_missingness.R | 40 R/assign_peptide_type.R | 87 + R/barcode_plot.R | 2 R/calculate_diff_abundance.R | 21 R/calculate_go_enrichment.R | 90 + R/calculate_kegg_enrichment.R | 2 R/calculate_protein_abundance.R | 2 R/calculate_treatment_enrichment.R | 4 R/correct_lip_for_abundance.R | 23 R/create_structure_contact_map.R | 2 R/data.R | 4 R/drc_4p.R | 2 R/extract_metal_binders.R | 155 ++ R/fetch_alphafold_aligned_error.R | 6 R/fetch_alphafold_prediction.R | 2 R/fetch_chebi.R | 317 +++-- R/fetch_interpro.R |only R/fetch_kegg.R | 4 R/fetch_metal_pdb.R | 4 R/fetch_pdb.R | 56 R/fetch_uniprot.R | 13 R/find_all_subs.R | 4 R/find_chebis.R | 2 R/find_peptide_in_structure.R | 41 R/fit_drc_4p.R | 2 R/impute.R | 1 R/impute_randomforest.R |only R/map_peptides_on_structure.R | 90 + R/normalise.R | 2 R/parallel_create_structure_contact_map.R | 12 R/parallel_fit_drc_4p.R | 12 R/predict_alphafold_domain.R | 4 R/pval_distribution_plot.R | 3 R/qc_charge_states.R | 4 R/qc_contaminants.R | 2 R/qc_cvs.R | 5 R/qc_data_completeness.R | 2 R/qc_ids.R | 2 R/qc_median_intensities.R | 2 R/qc_missed_cleavages.R | 4 R/qc_pca.R | 4 R/qc_peak_width.R | 1 R/qc_peptide_type.R | 8 R/qc_proteome_coverage.R | 4 R/qc_sample_correlation.R | 14 R/qc_sequence_coverage.R | 3 R/read_protti.R | 2 R/scale_protti.R | 8 R/volcano_plot.R | 2 README.md | 14 build/partial.rdb |binary build/vignette.rds |binary data/metal_chebi_uniprot.rda |binary data/metal_go_slim_subset.rda |binary data/metal_list.rda |binary inst/doc/data_analysis_dose_response_workflow.R | 320 ++--- inst/doc/data_analysis_dose_response_workflow.Rmd | 2 inst/doc/data_analysis_dose_response_workflow.html | 11 inst/doc/data_analysis_single_dose_treatment_workflow.R | 445 +++---- inst/doc/data_analysis_single_dose_treatment_workflow.Rmd | 7 inst/doc/data_analysis_single_dose_treatment_workflow.html | 30 inst/doc/input_preparation_workflow.R | 452 ++++---- inst/doc/input_preparation_workflow.Rmd | 2 inst/doc/input_preparation_workflow.html | 13 inst/doc/protein_structure_workflow.R | 620 +++++------ inst/doc/protein_structure_workflow.Rmd | 10 inst/doc/protein_structure_workflow.html | 11 inst/doc/quality_control_workflow.R | 328 ++--- inst/doc/quality_control_workflow.Rmd | 2 inst/doc/quality_control_workflow.html | 11 man/assign_peptide_type.Rd | 25 man/calculate_diff_abundance.Rd | 7 man/calculate_go_enrichment.Rd | 4 man/extract_metal_binders.Rd | 17 man/fetch_alphafold_aligned_error.Rd | 5 man/fetch_alphafold_prediction.Rd | 2 man/fetch_interpro.Rd |only man/fetch_kegg.Rd | 4 man/fetch_uniprot.Rd | 8 man/figures/README-volcano-1.png |binary man/find_peptide_in_structure.Rd | 6 man/impute_randomforest.Rd |only man/map_peptides_on_structure.Rd | 23 man/metal_chebi_uniprot.Rd | 2 man/metal_list.Rd | 2 man/scale_protti.Rd | 5 tests/testthat/Rplots.pdf |only tests/testthat/test-auxiliary_functions.R | 46 tests/testthat/test-fetch_extract_and_enrichment_functions.R | 31 tests/testthat/test-structure_functions.R | 12 tests/testthat/test-workflow.R | 42 vignettes/data_analysis_dose_response_workflow.Rmd | 2 vignettes/data_analysis_single_dose_treatment_workflow.Rmd | 7 vignettes/input_preparation_workflow.Rmd | 2 vignettes/protein_structure_workflow.Rmd | 10 vignettes/quality_control_workflow.Rmd | 2 101 files changed, 2237 insertions(+), 1640 deletions(-)
Title: Modelling Reproduction and Survival Data in Ecotoxicology
Description: Advanced methods for a valuable quantitative environmental risk
assessment using Bayesian inference of survival and reproduction Data. Among
others, it facilitates Bayesian inference of the general unified
threshold model of survival (GUTS). See our companion paper
Baudrot and Charles (2021) <doi:10.21105/joss.03200>,
as well as complementary details in Baudrot et al. (2018)
<doi:10.1021/acs.est.7b05464> and Delignette-Muller et al.
(2017) <doi:10.1021/acs.est.6b05326>.
Author: Virgile Baudrot [aut, cre],
Sandrine Charles [aut],
Marie Laure Delignette-Muller [aut],
Wandrille Duchemin [ctb],
Benoit Goussen [ctb],
Nils Kehrein [ctb],
Guillaume Kon-Kam-King [ctb],
Christelle Lopes [ctb],
Philippe Ruiz [ctb],
Alexander Singer [ [...truncated...]
Maintainer: Virgile Baudrot <virgile.baudrot@qonfluens.com>
Diff between morse versions 3.3.4 dated 2024-09-18 and 3.3.5 dated 2026-01-14
DESCRIPTION | 8 MD5 | 20 - NEWS | 7 R/morse-internal.R | 6 build/vignette.rds |binary inst/doc/MinimalWorkingExample.R | 180 ++++++------ inst/doc/MinimalWorkingExample.html | 1 inst/doc/modelling.html | 2 inst/doc/tutorial.R | 348 ++++++++++++------------- inst/doc/tutorial.html | 501 ++++++++++++++++++------------------ tests/testthat/test-LCx.R | 4 11 files changed, 549 insertions(+), 528 deletions(-)
Title: Hilbert Similarity Index for High Dimensional Data
Description: Quantifying similarity between high-dimensional single cell samples is challenging, and usually requires
some simplifying hypothesis to be made. By transforming the high dimensional space into a high dimensional grid,
the number of cells in each sub-space of the grid is characteristic of a given sample. Using a Hilbert curve
each sample can be visualized as a simple density plot, and the distance between samples can be calculated from
the distribution of cells using the Jensen-Shannon distance. Bins that correspond to significant differences
between samples can identified using a simple bootstrap procedure.
Author: Yann Abraham [aut, cre],
Marilisa Neri [aut],
John Skilling [ctb]
Maintainer: Yann Abraham <yann.abraham@gmail.com>
This is a re-admission after prior archival of version 0.4.3 dated 2019-11-11
Diff between hilbertSimilarity versions 0.4.3 dated 2019-11-11 and 0.4.4 dated 2026-01-14
hilbertSimilarity-0.4.3/hilbertSimilarity/README.md |only hilbertSimilarity-0.4.3/hilbertSimilarity/man/hilbertSimilarity.Rd |only hilbertSimilarity-0.4.3/hilbertSimilarity/src/Makevars |only hilbertSimilarity-0.4.3/hilbertSimilarity/src/Makevars.win |only hilbertSimilarity-0.4.4/hilbertSimilarity/DESCRIPTION | 17 hilbertSimilarity-0.4.4/hilbertSimilarity/MD5 | 79 hilbertSimilarity-0.4.4/hilbertSimilarity/NAMESPACE | 54 hilbertSimilarity-0.4.4/hilbertSimilarity/R/RcppExports.R | 86 hilbertSimilarity-0.4.4/hilbertSimilarity/R/add.cut.R | 70 hilbertSimilarity-0.4.4/hilbertSimilarity/R/andrewsProjection.R | 90 hilbertSimilarity-0.4.4/hilbertSimilarity/R/do.cut.R | 92 hilbertSimilarity-0.4.4/hilbertSimilarity/R/do.hilbert.R | 68 hilbertSimilarity-0.4.4/hilbertSimilarity/R/hilbert.order.R | 48 hilbertSimilarity-0.4.4/hilbertSimilarity/R/hilbertProjection.R | 64 hilbertSimilarity-0.4.4/hilbertSimilarity/R/hilbertSimilarity.R | 28 hilbertSimilarity-0.4.4/hilbertSimilarity/R/js.dist.R | 68 hilbertSimilarity-0.4.4/hilbertSimilarity/R/localMaxima.R | 46 hilbertSimilarity-0.4.4/hilbertSimilarity/R/localMinima.R | 44 hilbertSimilarity-0.4.4/hilbertSimilarity/R/make.cut.R | 412 +- hilbertSimilarity-0.4.4/hilbertSimilarity/R/show.cut.R | 128 hilbertSimilarity-0.4.4/hilbertSimilarity/build/vignette.rds |binary hilbertSimilarity-0.4.4/hilbertSimilarity/inst/doc/comparing_samples.R | 316 +- hilbertSimilarity-0.4.4/hilbertSimilarity/inst/doc/comparing_samples.Rmd | 606 ++-- hilbertSimilarity-0.4.4/hilbertSimilarity/inst/doc/comparing_samples.html | 1165 +++++--- hilbertSimilarity-0.4.4/hilbertSimilarity/inst/doc/identifying_effects.R | 356 +- hilbertSimilarity-0.4.4/hilbertSimilarity/inst/doc/identifying_effects.Rmd | 524 +-- hilbertSimilarity-0.4.4/hilbertSimilarity/inst/doc/identifying_effects.html | 1401 ++++++---- hilbertSimilarity-0.4.4/hilbertSimilarity/man/add.cut.Rd | 90 hilbertSimilarity-0.4.4/hilbertSimilarity/man/andrewsProjection.Rd | 140 hilbertSimilarity-0.4.4/hilbertSimilarity/man/do.cut.Rd | 92 hilbertSimilarity-0.4.4/hilbertSimilarity/man/do.hilbert.Rd | 92 hilbertSimilarity-0.4.4/hilbertSimilarity/man/hilbert.order.Rd | 90 hilbertSimilarity-0.4.4/hilbertSimilarity/man/hilbertMapping.Rd | 80 hilbertSimilarity-0.4.4/hilbertSimilarity/man/hilbertProjection.Rd | 112 hilbertSimilarity-0.4.4/hilbertSimilarity/man/hilbertSimilarity-package.Rd |only hilbertSimilarity-0.4.4/hilbertSimilarity/man/js.dist.Rd | 218 - hilbertSimilarity-0.4.4/hilbertSimilarity/man/localMaxima.Rd | 52 hilbertSimilarity-0.4.4/hilbertSimilarity/man/localMinima.Rd | 52 hilbertSimilarity-0.4.4/hilbertSimilarity/man/make.cut.Rd | 132 hilbertSimilarity-0.4.4/hilbertSimilarity/man/show.cut.Rd | 92 hilbertSimilarity-0.4.4/hilbertSimilarity/src/RcppExports.cpp | 5 hilbertSimilarity-0.4.4/hilbertSimilarity/vignettes/comparing_samples.Rmd | 606 ++-- hilbertSimilarity-0.4.4/hilbertSimilarity/vignettes/identifying_effects.Rmd | 524 +-- 43 files changed, 4398 insertions(+), 3741 deletions(-)
More information about hilbertSimilarity at CRAN
Permanent link
Title: Credible Visualization for Two-Dimensional Projections of Data
Description: Projections are common dimensionality reduction methods, which represent high-dimensional data in a two-dimensional space. However, when restricting the output space to two dimensions, which results in a two dimensional scatter plot (projection) of the data, low dimensional similarities do not represent high dimensional distances coercively [Thrun, 2018] <DOI: 10.1007/978-3-658-20540-9>. This could lead to a misleading interpretation of the underlying structures [Thrun, 2018]. By means of the 3D topographic map the generalized Umatrix is able to depict errors of these two-dimensional scatter plots. The package is derived from the book of Thrun, M.C.: "Projection Based Clustering through Self-Organization and Swarm Intelligence" (2018) <DOI:10.1007/978-3-658-20540-9> and the main algorithm called simplified self-organizing map for dimensionality reduction methods is published in Thrun, M.C. and Ultsch, A.: "Uncovering High-dimensional Structures of Projections from Dimension [...truncated...]
Author: Quirin Stier [aut, cre] ,
Michael Thrun [aut, cph] ,
The Khronos Group Inc. [cph]
Maintainer: Quirin Stier <Quirin_Stier@gmx.de>
Diff between GeneralizedUmatrixGPU versions 0.1.8 dated 2025-11-17 and 0.1.10 dated 2026-01-14
DESCRIPTION | 10 - MD5 | 14 - R/GeneralizedUmatrixGPU.R | 14 + build/partial.rdb |binary man/GeneralizedUmatrixGPU-package.Rd | 9 - man/GeneralizedUmatrixGPU.Rd | 7 src/RcppExports.cpp | 2 src/trainSESOM.cpp | 277 ++++++++++++++++++++++++----------- 8 files changed, 221 insertions(+), 112 deletions(-)
More information about GeneralizedUmatrixGPU at CRAN
Permanent link
Title: Generate and Simulate Deterministic Compartmental Models
Description: R package to build and simulate deterministic compartmental models that can be non-Markovian. Length of stay in each compartment can be defined to follow a parametric distribution (d_exponential(), d_gamma(), d_weibull(), d_lognormal()) or a non-parametric distribution (nonparametric()). Other supported types of transition from one compartment to another includes fixed transition (constant()), multinomial (multinomial()), fixed transition probability (transprob()).
Author: Thinh Ong [aut, cph] ,
Anh Phan [aut, cre] ,
Marc Choisy [aut] ,
Niels Lohman [ctb, cph] ,
Bjoern Hoehrmann [ctb, cph] ,
Florian Loitsch [ctb, cph] ,
Ingo Berg [ctb, cph]
Maintainer: Anh Phan <anhptq@oucru.org>
Diff between denim versions 1.2.2 dated 2025-08-21 and 1.2.3 dated 2026-01-14
DESCRIPTION | 30 +-- MD5 | 21 +- NEWS.md | 5 inst/doc/denim.R | 4 inst/doc/denim.Rmd | 12 + inst/doc/denim.html | 114 ++++++++---- man/denim-package.Rd | 8 src/Compartment.cpp | 7 src/test-denim.cpp | 23 ++ tests/testthat/test-denim_dsl.R | 155 +++++++++++++++++ vignettes/denim.Rmd | 12 + vignettes/images/denim_website-runtime-scaling-mod.png |only 12 files changed, 314 insertions(+), 77 deletions(-)
Title: Analysis and Visualization of Droplet Digital PCR in R and on
the Web
Description: An interface to explore, analyze, and visualize droplet digital PCR
(ddPCR) data in R. This is the first non-proprietary software for analyzing
two-channel ddPCR data. An interactive tool was also created and is available
online to facilitate this analysis for anyone who is not comfortable with
using R.
Author: Dean Attali [aut, cre]
Maintainer: Dean Attali <daattali@gmail.com>
Diff between ddpcr versions 1.15.2 dated 2025-11-08 and 1.16.0 dated 2026-01-14
ddpcr-1.15.2/ddpcr/inst/vignette_files |only ddpcr-1.15.2/ddpcr/inst/vignettes-supp |only ddpcr-1.16.0/ddpcr/DESCRIPTION | 18 ddpcr-1.16.0/ddpcr/MD5 | 125 ddpcr-1.16.0/ddpcr/NAMESPACE | 3 ddpcr-1.16.0/ddpcr/NEWS.md | 5 ddpcr-1.16.0/ddpcr/R/aaa.R | 2 ddpcr-1.16.0/ddpcr/R/concentration.R | 4 ddpcr-1.16.0/ddpcr/R/ddpcr-package.R | 3 ddpcr-1.16.0/ddpcr/R/empty.R | 67 ddpcr-1.16.0/ddpcr/R/failures.R | 8 ddpcr-1.16.0/ddpcr/R/outliers.R | 8 ddpcr-1.16.0/ddpcr/R/plate-attribs.R | 10 ddpcr-1.16.0/ddpcr/R/plate-utils.R | 29 ddpcr-1.16.0/ddpcr/R/plate.R | 4 ddpcr-1.16.0/ddpcr/R/plot.R | 86 ddpcr-1.16.0/ddpcr/R/pnpp_experiment-classify.R | 19 ddpcr-1.16.0/ddpcr/R/pnpp_experiment-filled.R | 4 ddpcr-1.16.0/ddpcr/R/pnpp_experiment-plot.R | 10 ddpcr-1.16.0/ddpcr/R/pnpp_experiment-reclassify.R | 12 ddpcr-1.16.0/ddpcr/R/read.R | 4 ddpcr-1.16.0/ddpcr/R/subset.R | 12 ddpcr-1.16.0/ddpcr/R/type-custom_thresholds.R | 4 ddpcr-1.16.0/ddpcr/R/type-pnpp_experiment.R | 10 ddpcr-1.16.0/ddpcr/R/utils.R | 52 ddpcr-1.16.0/ddpcr/README.md | 24 ddpcr-1.16.0/ddpcr/build/vignette.rds |binary ddpcr-1.16.0/ddpcr/inst/doc/algorithm.Rmd | 13 ddpcr-1.16.0/ddpcr/inst/doc/algorithm.html | 719 ++-- ddpcr-1.16.0/ddpcr/inst/doc/extend.html | 1003 +++-- ddpcr-1.16.0/ddpcr/inst/doc/overview.R | 2 ddpcr-1.16.0/ddpcr/inst/doc/overview.Rmd | 15 ddpcr-1.16.0/ddpcr/inst/doc/overview.html | 1769 +++++----- ddpcr-1.16.0/ddpcr/inst/doc/technical_details.Rmd | 10 ddpcr-1.16.0/ddpcr/inst/doc/technical_details.html | 553 ++- ddpcr-1.16.0/ddpcr/inst/sample_data/read_quant |only ddpcr-1.16.0/ddpcr/inst/shiny/server/tab-results.R | 2 ddpcr-1.16.0/ddpcr/man/ddpcr-package.Rd | 48 ddpcr-1.16.0/ddpcr/man/plot.ddpcr_plate.Rd | 4 ddpcr-1.16.0/ddpcr/tests/testthat/test-pnpp_experiment-calculate_neg_freq.R | 2 ddpcr-1.16.0/ddpcr/tests/testthat/test-read.R | 11 ddpcr-1.16.0/ddpcr/tests/testthat/test-utils.R | 23 ddpcr-1.16.0/ddpcr/vignettes/algorithm.Rmd | 13 ddpcr-1.16.0/ddpcr/vignettes/figures |only ddpcr-1.16.0/ddpcr/vignettes/generate-figures.R |only ddpcr-1.16.0/ddpcr/vignettes/overview.Rmd | 15 ddpcr-1.16.0/ddpcr/vignettes/technical_details.Rmd | 10 ddpcr-1.16.0/ddpcr/vignettes/vignette_data_B06_Amplitude.csv |only 48 files changed, 2939 insertions(+), 1796 deletions(-)
Title: Functions for University of Auckland Course STATS 201/208 Data
Analysis
Description: A set of functions used in teaching STATS 201/208 Data Analysis at
the University of Auckland. The functions are designed to make parts of R more
accessible to a large undergraduate population who are mostly not statistics
majors.
Author: Brant Deppa [aut] ,
James Curran [aut, cre] ,
Hannah Yun [ctb],
Rachel Fewster [ctb],
Russell Millar [ctb],
Ben Stevenson [ctb],
Andrew Balemi [ctb],
Chris Wild [ctb],
Sophie Jones [ctb],
Dineika Chandra [ctr],
Brendan McArdle [ctr]
Maintainer: James Curran <j.curran@auckland.ac.nz>
Diff between s20x versions 3.2.1 dated 2025-12-17 and 3.2.2 dated 2026-01-14
DESCRIPTION | 7 MD5 | 107 +-- R/cooks20x.R | 110 +-- R/eovcheck.R | 450 +++++++------- R/interactionPlots.R | 380 ++++++------ R/modcheck.R | 220 +++---- R/modelcheck.R | 156 ++--- R/pairs20x.R | 106 +-- R/s20x-data.R | 1555 ++++++++++++++++++++++++--------------------------- README.md | 14 data/airpass.df.rda |binary data/apples.df.rda |binary data/beer.df.rda |binary data/fire.df.rda |binary data/fruitfly.df.rda |only data/larain.df.rda |binary data/rain.df.rda |binary man/airpass.df.Rd | 8 man/apples.df.Rd | 12 man/arousal.df.Rd | 11 man/beer.df.Rd | 13 man/body.df.Rd | 18 man/books.df.Rd | 7 man/bursary.df.Rd | 9 man/butterfat.df.Rd | 11 man/camplake.df.Rd | 10 man/chalk.df.Rd | 10 man/computer.df.Rd | 9 man/course.df.Rd | 34 - man/course2way.df.Rd | 10 man/diamonds.df.Rd | 8 man/fire.df.Rd | 9 man/fruitfly.df.Rd | 9 man/house.df.Rd | 8 man/incomes.df.Rd | 3 man/lakemary.df.Rd | 8 man/larain.df.Rd | 8 man/mazda.df.Rd | 8 man/mening.df.Rd | 3 man/mergers.df.Rd | 3 man/mozart.df.Rd | 10 man/nail.df.Rd | 8 man/oysters.df.Rd | 10 man/peru.df.Rd | 14 man/rain.df.Rd | 11 man/seeds.df.Rd | 11 man/sheep.df.Rd | 9 man/skulls.df.Rd | 6 man/snapper.df.Rd | 8 man/soyabean.df.Rd | 10 man/teach.df.Rd | 10 man/technitron.df.Rd | 21 man/thyroid.df.Rd | 11 man/toothpaste.df.Rd | 10 man/zoo.df.Rd | 18 55 files changed, 1776 insertions(+), 1725 deletions(-)
Title: R Code for Mark Analysis
Description: An interface to the software package MARK that constructs input
files for MARK and extracts the output. MARK was developed by Gary White
and is freely available at <http://www.phidot.org/software/mark/downloads/>
but is not open source.
Author: Jeff Laake [cre, aut],
Eldar Rakhimberdiev [ctb],
Ben Augustine [ctb],
Daniel Turek [ctb],
Brett McClintock [ctb],
Jim Hines [ctb],
analysis from Bret Collier [ctb],
Jay Rotella [ctb],
David Pavlacky [ctb],
Andrew Paul [aut],
Luke Eberhart- Phillips [...truncated...]
Maintainer: Jeff Laake <jefflaake@gmail.com>
Diff between RMark versions 3.0.0 dated 2022-08-13 and 3.0.6 dated 2026-01-14
DESCRIPTION | 68 ++++++- MD5 | 48 ++--- NAMESPACE | 1 NEWS | 55 ++++++ R/RMark-package.R | 380 +++++++++++++++++++++++++++++++++++++++++- R/covariate.predictions.r | 4 R/extract.mark.output.R | 7 R/make.design.data.R | 15 + R/make.mark.model.R | 17 + R/model.average.default.r | 1 R/model.average.list.r | 5 R/model.average.marklist.R | 13 - R/popan.r | 2 R/predict_real.R | 16 - R/process.data.R | 2 R/zzz.R | 4 inst/CITATION | 26 -- inst/DerivedPar.txt | 3 inst/extdata/MSJS.inp |only inst/extdata/MSJS3state.inp |only inst/models.txt | 1 inst/parameters.txt | 22 +- man/HidMarkov.Rd |only man/MSJollySeber.Rd |only man/NSpeciesOcc.Rd | 6 man/RDMultScalOcc.Rd | 7 man/model.average.marklist.Rd | 11 - 27 files changed, 612 insertions(+), 102 deletions(-)
Title: Functions for Clustering and Testing of Presence-Absence,
Abundance and Multilocus Genetic Data
Description: Distance-based parametric bootstrap tests for clustering with
spatial neighborhood information. Some distance measures,
Clustering of presence-absence, abundance and multilocus genetic data
for species delimitation, nearest neighbor
based noise detection. Genetic distances between communities.
Tests whether various distance-based regressions
are equal. Try package?prabclus for on overview.
Author: Christian Hennig [aut, cre],
Bernhard Hausdorf [aut]
Maintainer: Christian Hennig <christian.hennig@unibo.it>
Diff between prabclus versions 2.3-4 dated 2024-09-24 and 2.3-5 dated 2026-01-14
DESCRIPTION | 11 - MD5 | 10 - man/NNclean.Rd | 2 tests/Examples/prabclus-Ex.Rout.save | 20 +- tests/prabclustests.R | 4 tests/prabclustests.Rout.save | 278 ++++++++++++++++------------------- 6 files changed, 155 insertions(+), 170 deletions(-)
Title: Open Perimetry Interface
Description: Implementation of the Open Perimetry Interface (OPI) for simulating and controlling visual field machines using R. The OPI is a standard for interfacing with visual field testing machines (perimeters) first started as an open source project with support of Haag-Streit in 2010. It specifies basic functions that allow many visual field tests to be constructed. As of February 2022 it is fully implemented on the Haag-Streit Octopus 900 and 'CrewT ImoVifa' ('Topcon Tempo') with partial implementations on the Centervue Compass, Kowa AP 7000 and Android phones. It also has a cousin: the R package 'visualFields', which has tools for analysing and manipulating visual field data.
Author: Andrew Turpin [cre, aut, cph] ,
David Lawson [ctb, cph],
Ivan Marin-Franch [ctb, cph],
Matthias Muller [ctb],
Jonathan Denniss [ctb, cph],
Astrid Zeman [ctb],
Giovanni Montesano [ctb]
Maintainer: Andrew Turpin <andrew.turpin@lei.org.au>
Diff between OPI versions 3.0.5 dated 2025-10-14 and 3.0.6 dated 2026-01-14
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 5 ++++- tests/testthat/test-opiPresent.r | 2 +- 4 files changed, 12 insertions(+), 9 deletions(-)
Title: Flexible Procedures for Clustering
Description: Various methods for clustering and cluster validation.
Fixed point clustering. Linear regression clustering. Clustering by
merging Gaussian mixture components. Symmetric
and asymmetric discriminant projections for visualisation of the
separation of groupings. Cluster validation statistics
for distance based clustering including corrected Rand index.
Standardisation of cluster validation statistics by random clusterings and
comparison between many clustering methods and numbers of clusters based on
this.
Cluster-wise cluster stability assessment. Methods for estimation of
the number of clusters: Calinski-Harabasz, Tibshirani and Walther's
prediction strength, Fang and Wang's bootstrap stability.
Gaussian/multinomial mixture fitting for mixed
continuous/categorical variables. Variable-wise statistics for cluster
interpretation. DBSCAN clustering. Interface functions for many
clustering methods implemented in R, including estimating the number of
clusters with kmeans, pam and clara. Modal [...truncated...]
Author: Christian Hennig [aut, cre]
Maintainer: Christian Hennig <christian.hennig@unibo.it>
Diff between fpc versions 2.2-13 dated 2024-09-24 and 2.2-14 dated 2026-01-14
fpc-2.2-13/fpc/tests/fpctests_notallin.R |only fpc-2.2-13/fpc/tests/fpctests_notallin.Rout.save |only fpc-2.2-14/fpc/DESCRIPTION | 8 ++-- fpc-2.2-14/fpc/MD5 | 18 ++++----- fpc-2.2-14/fpc/man/extract.mixturepars.Rd | 4 +- fpc-2.2-14/fpc/man/mergenormals.Rd | 4 +- fpc-2.2-14/fpc/man/mergeparameters.Rd | 4 +- fpc-2.2-14/fpc/man/mixdens.Rd | 4 +- fpc-2.2-14/fpc/man/weightplots.Rd | 4 +- fpc-2.2-14/fpc/tests/Examples/fpc-Ex.Rout.save | 46 ++++++++++++++--------- fpc-2.2-14/fpc/tests/fpctest_notallin.R |only fpc-2.2-14/fpc/tests/fpctest_notallin.Rout.save |only 12 files changed, 51 insertions(+), 41 deletions(-)
Title: Fast Computation of some Matrices Useful in Statistics
Description: Small set of functions designed to speed up the computation of certain
matrix operations that are commonly used in statistics and econometrics. It provides
efficient implementations for the computation of several structured matrices, matrix
decompositions and statistical procedures, many of which have minimal memory overhead.
Furthermore, the package provides interfaces to C code callable by another C code
from other R packages.
Author: Felipe Osorio [aut, cre] ,
Alonso Ogueda [aut]
Maintainer: Felipe Osorio <faosorios.stat@gmail.com>
Diff between fastmatrix versions 0.6-4 dated 2025-10-23 and 0.6-6 dated 2026-01-14
fastmatrix-0.6-4/fastmatrix/src/omo.f |only fastmatrix-0.6-4/fastmatrix/src/omo_wrapper.c |only fastmatrix-0.6-6/fastmatrix/ChangeLog | 6 + fastmatrix-0.6-6/fastmatrix/DESCRIPTION | 13 +- fastmatrix-0.6-6/fastmatrix/MD5 | 42 ++++---- fastmatrix-0.6-6/fastmatrix/NAMESPACE | 9 - fastmatrix-0.6-6/fastmatrix/R/distn.R |only fastmatrix-0.6-6/fastmatrix/R/householder.R |only fastmatrix-0.6-6/fastmatrix/R/mediancenter.R | 2 fastmatrix-0.6-6/fastmatrix/R/rank1_update.R |only fastmatrix-0.6-6/fastmatrix/build/partial.rdb |binary fastmatrix-0.6-6/fastmatrix/inst/CITATION | 8 - fastmatrix-0.6-6/fastmatrix/inst/include/fastmatrix.h | 5 fastmatrix-0.6-6/fastmatrix/inst/include/fastmatrix_API.h | 25 ---- fastmatrix-0.6-6/fastmatrix/man/ccc.Rd | 4 fastmatrix-0.6-6/fastmatrix/man/chi.Rd |only fastmatrix-0.6-6/fastmatrix/man/house.Rd |only fastmatrix-0.6-6/fastmatrix/man/house.prod.Rd |only fastmatrix-0.6-6/fastmatrix/man/rank1.update.Rd |only fastmatrix-0.6-6/fastmatrix/src/RNG.c | 61 ----------- fastmatrix-0.6-6/fastmatrix/src/R_init_fastmatrix.c | 18 +-- fastmatrix-0.6-6/fastmatrix/src/distn.c |only fastmatrix-0.6-6/fastmatrix/src/fastmatrix.h | 62 +++++++---- fastmatrix-0.6-6/fastmatrix/src/householder.c |only fastmatrix-0.6-6/fastmatrix/src/matrix_API.c | 73 +++++++++++++- fastmatrix-0.6-6/fastmatrix/src/power_method.c | 6 - fastmatrix-0.6-6/fastmatrix/src/rank1_update.c |only fastmatrix-0.6-6/fastmatrix/src/wilson_hilferty.c | 2 28 files changed, 176 insertions(+), 160 deletions(-)
Title: Fast Agent-Based Epi Models
Description: A flexible framework for Agent-Based Models (ABM), the 'epiworldR' package provides methods for prototyping disease outbreaks and transmission models using a 'C++' backend, making it very fast. It supports multiple epidemiological models, including the Susceptible-Infected-Susceptible (SIS), Susceptible-Infected-Removed (SIR), Susceptible-Exposed-Infected-Removed (SEIR), and others, involving arbitrary mitigation policies and multiple-disease models. Users can specify infectiousness/susceptibility rates as a function of agents' features, providing great complexity for the model dynamics. Furthermore, 'epiworldR' is ideal for simulation studies featuring large populations.
Author: George Vega Yon [aut, cre] ,
Derek Meyer [aut] ,
Andrew Pulsipher [aut] ,
Susan Holmes [rev] ,
Abinash Satapathy [rev] ,
Carinogurjao [rev],
Centers for Disease Control and Prevention [fnd]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Diff between epiworldR versions 0.11.0.0 dated 2025-12-22 and 0.11.0.1 dated 2026-01-14
DESCRIPTION | 6 +++--- MD5 | 22 +++++++++++----------- NEWS.md | 5 +++++ README.md | 29 ++++++++++++++++------------- inst/doc/advanced-modeling.html | 22 +++++++++++----------- inst/doc/getting-started.html | 18 +++++++++--------- inst/doc/likelihood-free-mcmc.html | 12 ++++++------ inst/doc/mixing.html | 12 ++++++------ inst/doc/run-multiple.html | 8 ++++---- inst/tinytest/test-model-methods.R | 7 +------ inst/tinytest/test-sir.R | 6 ------ man/figures/README-transmission-net-1.png |binary 12 files changed, 72 insertions(+), 75 deletions(-)
Title: Extension for 'DALEX' Package
Description: Provides wrapper of various machine learning models.
In applied machine learning, there
is a strong belief that we need to strike a balance
between interpretability and accuracy.
However, in field of the interpretable machine learning,
there are more and more new ideas for explaining black-box models,
that are implemented in 'R'.
'DALEXtra' creates 'DALEX' Biecek (2018) <doi:10.48550/arXiv.1806.08915> explainer for many type of models
including those created using 'python' 'scikit-learn' and 'keras' libraries, and 'java' 'h2o' library.
Important part of the package is Champion-Challenger analysis and innovative approach
to model performance across subsets of test data presented in Funnel Plot.
Author: Szymon Maksymiuk [aut, cre] ,
Przemyslaw Biecek [aut] ,
Hubert Baniecki [aut],
Anna Kozak [ctb]
Maintainer: Szymon Maksymiuk <sz.maksymiuk@gmail.com>
Diff between DALEXtra versions 2.3.0 dated 2023-05-25 and 2.3.1 dated 2026-01-14
DESCRIPTION | 16 ++++++++------ MD5 | 32 ++++++++++++++-------------- NAMESPACE | 4 +++ NEWS.md | 4 +++ R/explain_mlr.R | 2 - R/explain_mlr3.R | 4 --- R/explain_tidymodels.R | 3 -- R/explain_xgboost.R | 37 ++++++++------------------------- R/generate_chunk.R | 4 +++ R/model_info.R | 2 - R/yhat.R | 28 ++++--------------------- man/dalex_load_explainer.Rd | 38 +++++++++++++++++----------------- man/explain_mlr.Rd | 2 - man/explain_mlr3.Rd | 2 - man/explain_tidymodels.Rd | 3 -- man/explain_xgboost.Rd | 32 ++++++++-------------------- tests/testthat/test_xgboost_explain.R | 25 ++++++++-------------- 17 files changed, 92 insertions(+), 146 deletions(-)
Title: Make Fake Data
Description: Make fake data that looks realistic, supporting addresses,
person names, dates,
times, colors, coordinates, currencies, digital object identifiers
('DOIs'), jobs, phone numbers, 'DNA' sequences, doubles and integers
from distributions and within a range.
Author: Roel M. Hogervorst [cre, aut] ,
Scott Chamberlain [aut] ,
Kyle Voytovich [aut],
Martin Pedersen [ctb],
Brooke Anderson [rev] ,
Tristan Mahr [rev] ,
rOpenSci [fnd]
Maintainer: Roel M. Hogervorst <hogervorst.rm@gmail.com>
Diff between charlatan versions 0.6.1 dated 2024-10-17 and 0.6.2 dated 2026-01-14
DESCRIPTION | 18 ++-- MD5 | 58 ++++++------- NEWS.md | 24 ++--- R/address-provider-en_GB.R | 1 R/address-provider-en_NZ.R | 1 R/color-provider-en_US.R | 1 R/company-provider-es_MX.R | 1 R/company-provider-fr_FR.R | 2 R/jobs-provider.R | 1 R/misc-provider.R | 1 R/person-provider-cs_CZ.R | 1 R/person-provider-fi_FI.R | 1 R/person-provider-hr_HR.R | 1 R/person-provider-ne_NP.R | 1 R/person-provider-no_NO.R | 1 R/person-provider-pl_PL.R | 1 R/phonenumber-provider-rest.R | 9 -- R/zzz.R | 1 build/vignette.rds |binary inst/WORDLIST | 1 inst/doc/charlatan.R | 4 inst/doc/charlatan.html | 153 +++++++++++++++++------------------ man/PhoneNumberProvider_nn_NO.Rd | 2 man/PhoneNumberProvider_no_NO.Rd | 10 +- tests/testthat/test-backwards-comp.R | 2 tests/testthat/test-datetime.R | 3 tests/testthat/test-fraudster.R | 1 tests/testthat/test-generate.R | 1 tests/testthat/test-missing.R | 1 tests/testthat/test-taxonomy.R | 2 30 files changed, 140 insertions(+), 164 deletions(-)
Title: Access Argentinian Data via APIs and Curated Datasets
Description: Provides functions to access data from public RESTful APIs including the 'ArgentinaDatos API',
'REST Countries API', and 'World Bank API' related to Argentina's exchange rates, inflation,
political figures, holidays, economic indicators, and general country-level statistics.
Additionally, the package includes curated datasets related to Argentina, covering topics
such as economic indicators, biodiversity, agriculture, human rights, genetic data, and
consumer prices. The package supports research and analysis focused on Argentina by
integrating open APIs with high-quality datasets from various domains.
For more details on the APIs, see:
'ArgentinaDatos API' <https://argentinadatos.com/>,
'REST Countries API' <https://restcountries.com/>,
and 'World Bank API' <https://datahelpdesk.worldbank.org/knowledgebase/articles/889392>.
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between ArgentinAPI versions 0.2.0 dated 2025-09-13 and 0.2.1 dated 2026-01-14
DESCRIPTION | 6 - MD5 | 94 ++++++++++---------- NEWS.md | 19 ++++ R/argentinapi-package.R | 4 R/data-documentation.R | 4 R/get_argentina_child_mortality.R | 4 R/get_argentina_energy_use.R | 4 R/get_argentina_gdp.R | 4 R/get_argentina_hospital_beds.R | 4 R/get_argentina_life_expectancy.R | 4 R/get_argentina_population.R | 4 R/get_argentina_unemployment.R | 4 R/get_argentine_deputies.R | 4 R/get_argentine_senators.R | 16 ++- R/get_argentinian_holidays.R | 30 ++++-- R/get_country_info_ar.R | 4 R/get_presidential_events.R | 4 R/get_usd_exchange_rates.R | 4 R/utils.R | 4 R/view_datasets_ArgentinAPI.R | 4 build/vignette.rds |binary inst/CITATION | 2 inst/doc/ArgentinAPI_vignette.html | 31 +++--- inst/licenses/LICENSE | 2 inst/licenses/LICENSE.md | 2 man/get_argentine_senators.Rd | 1 man/get_argentinian_holidays.Rd | 5 - tests/testthat/test-Argentina_CPI_ts.R | 4 tests/testthat/test-Argentina_taxes_df.R | 4 tests/testthat/test-STRs_argentina_list.R | 4 tests/testthat/test-corn_nitrogen_df.R | 4 tests/testthat/test-detention_centers_tbl_df.R | 4 tests/testthat/test-get_argentina_child_mortality.R | 4 tests/testthat/test-get_argentina_energy_use.R | 4 tests/testthat/test-get_argentina_gdp.R | 4 tests/testthat/test-get_argentina_hospital_beds.R | 4 tests/testthat/test-get_argentina_life_expectancy.R | 4 tests/testthat/test-get_argentina_population.R | 4 tests/testthat/test-get_argentina_unemployment.R | 4 tests/testthat/test-get_argentine_deputies.R | 4 tests/testthat/test-get_argentine_senators.R | 15 ++- tests/testthat/test-get_argentinian_holidays.R | 20 +++- tests/testthat/test-get_country_info_ar.R | 4 tests/testthat/test-get_presidential_events.R | 4 tests/testthat/test-get_usd_exchange_rates.R | 4 tests/testthat/test-pollination_matrix.R | 4 tests/testthat/test-repression_victims_tbl_df.R | 4 tests/testthat/test-view_datasets_ArgentinAPI.R | 4 48 files changed, 217 insertions(+), 162 deletions(-)
Title: Create Table Summaries and Export Neat Tables to 'Excel'
Description: A high-level interface for creating and exporting summary tables to
'Excel'. Built on 'dplyr' and 'openxlsx', it provides tools for generating
one-way to n-way tables, and summarizing multiple response questions
and question blocks. Tables are exported with native 'Excel' formatting,
including titles, footnotes, and basic styling options.
Author: Nicholas Hilderson [aut, cre, cph]
Maintainer: Nicholas Hilderson <nhilderson.code@gmail.com>
Diff between xlr versions 1.0.3 dated 2025-03-07 and 1.1.0 dated 2026-01-14
DESCRIPTION | 18 MD5 | 113 +- NAMESPACE | 53 + NEWS.md | 49 + R/build_multiple_response_table.R | 212 ++++- R/build_question_block_table.R | 80 + R/is_xlr_type.R | 3 R/make_wider.R |only R/xlr_doc.R | 8 R/xlr_format.R | 42 - R/xlr_integer.R | 121 +-- R/xlr_n_percent.R |only R/xlr_numeric.R | 181 ++-- R/xlr_percent.R | 157 ++- R/xlr_table.R | 17 R/xlr_to_workbook.R | 36 README.md | 16 build/vignette.rds |binary inst/doc/xlr.Rmd | 2 inst/doc/xlr.html | 41 - inst/examples/build_multiple_response_table.R | 49 + inst/examples/xlr_n_percent.R |only man/apply_NA_rules.Rd |only man/build_mtable.Rd | 63 + man/build_qtable.Rd | 63 - man/make_wider.Rd |only man/xlr_format.Rd | 11 man/xlr_n_percent.Rd |only tests/testthat/_output_excel_snaps/add_TOC_to_workbook.xlsx |binary tests/testthat/_output_excel_snaps/add_TOC_to_workbook_old_workbook.xlsx |binary tests/testthat/_output_excel_snaps/column_widths.xlsx |only tests/testthat/_output_excel_snaps/create_table_of_contents.xlsx |binary tests/testthat/_output_excel_snaps/data_to_worksheet.xlsx |binary tests/testthat/_output_excel_snaps/data_to_worksheet_data_table.xlsx |binary tests/testthat/_output_excel_snaps/data_to_worksheet_data_table_name.xlsx |binary tests/testthat/_output_excel_snaps/dataframe_to_sheet.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_sheet.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_workbook.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_workbook_TOC.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_workbook_old_wb.xlsx |binary tests/testthat/_output_excel_snaps/xlr_table_to_workbook_old_wb_2.xlsx |binary tests/testthat/_snaps/build_multiple_response_table.md | 24 tests/testthat/_snaps/build_question_block_table.md | 4 tests/testthat/_snaps/make_wider.md |only tests/testthat/_snaps/xlr_format.md | 34 tests/testthat/_snaps/xlr_integer.md | 20 tests/testthat/_snaps/xlr_n_percent.md |only tests/testthat/_snaps/xlr_numeric.md | 26 tests/testthat/_snaps/xlr_percent.md | 22 tests/testthat/_snaps/xlr_table.md | 8 tests/testthat/_snaps/xlr_to_workbook.md | 6 tests/testthat/_snaps/xlr_vector.md | 4 tests/testthat/test-build_multiple_response_table.R | 402 +++++++++- tests/testthat/test-build_question_block_table.R | 291 +++++++ tests/testthat/test-make_wider.R |only tests/testthat/test-xlr_format.R | 20 tests/testthat/test-xlr_integer.R | 83 +- tests/testthat/test-xlr_n_percent.R |only tests/testthat/test-xlr_numeric.R | 51 + tests/testthat/test-xlr_percent.R | 107 +- tests/testthat/test-xlr_to_workbook.R | 59 + tests/testthat/test_xlsx_files/data_to_worksheet.xlsx |binary vignettes/xlr.Rmd | 2 63 files changed, 2000 insertions(+), 498 deletions(-)