Title: Water Resources System Simulator
Description: Tools for constructing, simulating, and analyzing large-scale
water resources systems. The package provides functions to represent
system components such as reservoirs, aquifers, rivers, diversions,
and demand sites, and to simulate system behavior under Standard
Operating Policy. It also supports the development and evaluation
of water allocation strategies and hydropower operations within
integrated water resources systems.
Author: Rezgar Arabzadeh [aut, cre],
Parisa Aberi [aut],
Kaveh Panaghi [aut],
Shahab Araghinejad [aut],
Majid Montaseri [aut]
Maintainer: Rezgar Arabzadeh <rarabzad@uwaterloo.ca>
This is a re-admission after prior archival of version 3.1 dated 2022-05-29
Diff between WRSS versions 3.1 dated 2022-05-29 and 3.2 dated 2026-03-05
WRSS-3.1/WRSS/man/figures/Thumbs.db |only WRSS-3.2/WRSS/DESCRIPTION | 37 +- WRSS-3.2/WRSS/MD5 | 83 ++--- WRSS-3.2/WRSS/R/createAquifer.R | 2 WRSS-3.2/WRSS/R/createAquifer.base.R | 5 WRSS-3.2/WRSS/R/createAquifer.default.R | 16 - WRSS-3.2/WRSS/R/createDemandSite.R | 2 WRSS-3.2/WRSS/R/createDemandSite.base.R | 5 WRSS-3.2/WRSS/R/createDemandSite.default.R | 18 - WRSS-3.2/WRSS/R/createDiversion.R | 2 WRSS-3.2/WRSS/R/createDiversion.base.R | 5 WRSS-3.2/WRSS/R/createDiversion.default.R | 86 +++-- WRSS-3.2/WRSS/R/createJunction.R | 2 WRSS-3.2/WRSS/R/createJunction.base.R | 6 WRSS-3.2/WRSS/R/createJunction.default.R | 50 ++- WRSS-3.2/WRSS/R/createReservoir.R | 2 WRSS-3.2/WRSS/R/createReservoir.base.R | 5 WRSS-3.2/WRSS/R/createReservoir.default.R | 149 +++++---- WRSS-3.2/WRSS/R/createRiver.R | 2 WRSS-3.2/WRSS/R/createRiver.base.R | 5 WRSS-3.2/WRSS/R/createRiver.default.R | 94 +++-- WRSS-3.2/WRSS/inst/CITATION | 49 +-- WRSS-3.2/WRSS/man/WRSS-package.Rd | 412 +++++++++++++------------- WRSS-3.2/WRSS/man/addObjectToArea.Rd | 2 WRSS-3.2/WRSS/man/createAquifer.Rd | 3 WRSS-3.2/WRSS/man/createAquifer.base.Rd | 3 WRSS-3.2/WRSS/man/createAquifer.default.Rd | 4 WRSS-3.2/WRSS/man/createDemandSite.Rd | 5 WRSS-3.2/WRSS/man/createDemandSite.base.Rd | 5 WRSS-3.2/WRSS/man/createDemandSite.default.Rd | 6 WRSS-3.2/WRSS/man/createDiversion.Rd | 3 WRSS-3.2/WRSS/man/createDiversion.base.Rd | 3 WRSS-3.2/WRSS/man/createDiversion.default.Rd | 4 WRSS-3.2/WRSS/man/createJunction.Rd | 3 WRSS-3.2/WRSS/man/createJunction.base.Rd | 3 WRSS-3.2/WRSS/man/createJunction.default.Rd | 3 WRSS-3.2/WRSS/man/createReservoir.Rd | 4 WRSS-3.2/WRSS/man/createReservoir.base.Rd | 54 +-- WRSS-3.2/WRSS/man/createReservoir.default.Rd | 4 WRSS-3.2/WRSS/man/createRiver.Rd | 3 WRSS-3.2/WRSS/man/createRiver.base.Rd | 3 WRSS-3.2/WRSS/man/createRiver.default.Rd | 4 WRSS-3.2/WRSS/man/sim.Rd | 2 43 files changed, 654 insertions(+), 504 deletions(-)
Title: 3D Visualization Using OpenGL
Description: Provides medium to high level functions for 3D interactive graphics, including
functions modelled on base graphics (plot3d(), etc.) as well as functions for
constructing representations of geometric objects (cube3d(), etc.). Output
may be on screen using OpenGL, or to various standard 3D file formats including
WebGL, PLY, OBJ, STL as well as 2D image formats, including PNG, Postscript, SVG, PGF.
Author: Duncan Murdoch [aut, cre],
Daniel Adler [aut],
Oleg Nenadic [ctb],
Simon Urbanek [ctb],
Ming Chen [ctb],
Albrecht Gebhardt [ctb],
Ben Bolker [ctb],
Gabor Csardi [ctb],
Adam Strzelecki [ctb],
Alexander Senger [ctb],
The R Core Team [ctb, cph],
Dirk Ed [...truncated...]
Maintainer: Duncan Murdoch <murdoch.duncan@gmail.com>
Diff between rgl versions 1.3.34 dated 2026-02-02 and 1.3.36 dated 2026-03-05
DESCRIPTION | 6 - MD5 | 26 +++---- NEWS.md | 5 + build/partial.rdb |binary inst/doc/WebGL.html | 26 +++---- inst/doc/demos.html | 88 ++++++++++++------------- inst/doc/deprecation.html | 4 - inst/doc/pkgdown.html | 6 - inst/doc/rgl.html | 50 +++++++------- inst/doc/transparency.html | 24 +++--- inst/htmlwidgets/lib/rglClass/rglClass.min.js | 6 - inst/htmlwidgets/lib/rglClass/shadersrc.src.js | 6 + man/shinyGetPar3d.Rd | 72 +++++++++++++------- src/Background.cpp | 6 - 14 files changed, 176 insertions(+), 149 deletions(-)
Title: Descriptive Statistics and Data Management Tools
Description: Extracts and summarizes metadata from data frames, including variable names, labels, types, and missing values. Computes compact descriptive statistics, frequency tables, and cross-tabulations to assist with efficient data exploration. Includes an interactive and exportable codebook generator for documenting variable metadata. Facilitates the identification of missing data patterns and structural issues in datasets. Designed to streamline initial data management and exploratory analysis workflows within 'R'.
Author: Amal Tawfik [aut, cre, cph]
Maintainer: Amal Tawfik <amal.tawfik@hesav.ch>
Diff between spicy versions 0.4.1 dated 2025-12-21 and 0.4.2 dated 2026-03-05
DESCRIPTION | 12 MD5 | 49 - NAMESPACE | 4 NEWS.md | 141 +-- R/code_book.R | 8 R/copy_clipboard.R | 21 R/count_n.R | 20 R/cramer_v.R | 22 R/cross_tab.R | 1275 +++++++++++++++++---------------- R/freq.R | 13 R/label_from_names.R | 4 R/mean_n.R | 39 - R/spicy-package.R | 2 R/sum_n.R | 39 - README.md | 74 - inst/CITATION | 25 man/cross_tab.Rd | 10 tests/testthat/test-copy_clipboard.R | 10 tests/testthat/test-count_n.R | 19 tests/testthat/test-cramer_v.R | 17 tests/testthat/test-cross_tab.R | 96 ++ tests/testthat/test-freq.R | 35 tests/testthat/test-label_from_names.R | 8 tests/testthat/test-mean_n.R | 26 tests/testthat/test-sum_n.R | 26 tools |only 26 files changed, 1154 insertions(+), 841 deletions(-)
Title: 'ggplot2'-Based Tools for Visualising DNA Sequences and
Modifications
Description: Uses 'ggplot2' to visualise either (a) a single DNA/RNA sequence split across multiple lines, (b) multiple DNA/RNA sequences, each occupying a whole line, or (c) base modifications such as DNA methylation called by modified bases models in Dorado or Guppy. Functions starting with visualise_<>() are the main plotting functions, and functions starting with extract_and_sort_<>() are key helper functions for reading files and reformatting data. Source code is available at <https://github.com/ejade42/ggDNAvis>, a full non-expert user guide is available at <https://ejade42.github.io/ggDNAvis/>, and an interactive web-app version of the software is available at <https://ejade42.github.io/ggDNAvis/articles/interactive_app.html>.
Author: Evelyn Jade [aut, cre, cph]
Maintainer: Evelyn Jade <evelynjade42@gmail.com>
Diff between ggDNAvis versions 0.3.2 dated 2025-10-31 and 1.0.0 dated 2026-03-05
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Title: Regional and Multi-Regional Input-Output Data
Description: Provides Regional (Brazil, 2020) and Multi-Regional (World, 2000)
input-output matrices for R. This package serves as a data-only
companion to the 'fio' package, facilitating input-output analysis
by providing standardized R6 data objects.
Author: Alberson da Silva Miranda [aut, cre, cph] ,
Celso Bissoli Sessa [aut, dtc]
Maintainer: Alberson da Silva Miranda <albersonmiranda@hotmail.com>
Diff between fiodata versions 0.0.1 dated 2026-02-25 and 0.1.1 dated 2026-03-05
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NAMESPACE | 1 + NEWS.md | 4 ++++ R/br_2020.R | 3 ++- R/world_2000.R | 1 + 6 files changed, 18 insertions(+), 11 deletions(-)
Title: Biostatistics and Clinical Data Analysis
Description: Biostatistical and clinical data analysis, including descriptive
statistics, exploratory data analysis, sample size and power calculations,
statistical inference, and data visualization. Normality tests are
implemented following Mishra et al. (2019) <doi:10.4103/aca.ACA_157_18>,
omnibus test procedures are based on Blanca et al. (2017)
<doi:10.3758/s13428-017-0918-2> and Field et al. (2012, ISBN:9781446200469),
while sample size and power calculation methods follow Chow et al. (2017)
<doi:10.1201/9781315183084>.
Author: Sebastian Quirarte-Justo [aut, cre] ,
Angela Carolina Montano-Ruiz [aut] ,
Jose Maria Torres-Arellano [aut] ,
Laboratorios Sophia S.A. de C.V. [cph, fnd]
Maintainer: Sebastian Quirarte-Justo <sebastian.quirarte@sophia.com.mx>
Diff between biostats versions 1.1.1 dated 2025-12-16 and 1.1.2 dated 2026-03-05
DESCRIPTION | 6 - MD5 | 18 ++-- NEWS.md | 10 ++ R/sample_size.R | 30 ++++--- R/sample_size_range.R | 50 +++++++----- README.md | 121 ++++++++++++++---------------- man/figures/README-unnamed-chunk-24-1.png |binary man/figures/README-unnamed-chunk-24-2.png |binary tests/testthat/test-sample_size.R | 7 - tests/testthat/test-sample_size_range.R | 8 - 10 files changed, 136 insertions(+), 114 deletions(-)
Title: Generate Random Data Sets
Description: Generates random data sets including: data.frames, lists,
and vectors.
Author: Tyler Rinker [aut, cre],
Josh O'Brien [ctb],
Ananda Mahto [ctb],
Matthew Sigal [ctb],
Jonathan Carroll [ctb],
Scott Westenberger [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between wakefield versions 0.3.6 dated 2020-09-13 and 0.3.9 dated 2026-03-05
wakefield-0.3.6/wakefield/NEWS |only wakefield-0.3.6/wakefield/man/plot.tbl_df.Rd |only wakefield-0.3.6/wakefield/man/wakefield.Rd |only wakefield-0.3.9/wakefield/DESCRIPTION | 11 wakefield-0.3.9/wakefield/MD5 | 441 +- wakefield-0.3.9/wakefield/NAMESPACE | 213 - wakefield-0.3.9/wakefield/R/age.R | 44 wakefield-0.3.9/wakefield/R/animal.R | 106 wakefield-0.3.9/wakefield/R/answer.R | 36 wakefield-0.3.9/wakefield/R/area.R | 38 wakefield-0.3.9/wakefield/R/as_integer.R | 74 wakefield-0.3.9/wakefield/R/car.R | 42 wakefield-0.3.9/wakefield/R/children.R | 40 wakefield-0.3.9/wakefield/R/coin.R | 36 wakefield-0.3.9/wakefield/R/color.R | 104 wakefield-0.3.9/wakefield/R/date_stamp.R | 104 wakefield-0.3.9/wakefield/R/death.R | 52 wakefield-0.3.9/wakefield/R/dice.R | 36 wakefield-0.3.9/wakefield/R/dna.R | 34 wakefield-0.3.9/wakefield/R/dob.R | 72 wakefield-0.3.9/wakefield/R/dummy.R | 50 wakefield-0.3.9/wakefield/R/education.R | 94 wakefield-0.3.9/wakefield/R/employment.R | 62 wakefield-0.3.9/wakefield/R/eye.R | 58 wakefield-0.3.9/wakefield/R/grade.R | 224 - wakefield-0.3.9/wakefield/R/grade_level.R | 34 wakefield-0.3.9/wakefield/R/group.R | 44 wakefield-0.3.9/wakefield/R/hair.R | 60 wakefield-0.3.9/wakefield/R/height.R | 108 wakefield-0.3.9/wakefield/R/hour.R | 44 wakefield-0.3.9/wakefield/R/id.R | 126 wakefield-0.3.9/wakefield/R/income.R | 58 wakefield-0.3.9/wakefield/R/internet_browser.R | 104 wakefield-0.3.9/wakefield/R/interval.R | 82 wakefield-0.3.9/wakefield/R/iq.R | 44 wakefield-0.3.9/wakefield/R/language.R | 56 wakefield-0.3.9/wakefield/R/level.R | 126 wakefield-0.3.9/wakefield/R/likert.R | 76 wakefield-0.3.9/wakefield/R/lorem_ipsum.R | 82 wakefield-0.3.9/wakefield/R/marital.R | 38 wakefield-0.3.9/wakefield/R/military.R | 62 wakefield-0.3.9/wakefield/R/minute.R | 48 wakefield-0.3.9/wakefield/R/month.R | 46 wakefield-0.3.9/wakefield/R/name.R | 46 wakefield-0.3.9/wakefield/R/normal.R | 144 wakefield-0.3.9/wakefield/R/peek.R | 144 wakefield-0.3.9/wakefield/R/political.R | 96 wakefield-0.3.9/wakefield/R/probs.R | 44 wakefield-0.3.9/wakefield/R/r_data.R | 189 - wakefield-0.3.9/wakefield/R/r_data_frame.R | 272 - wakefield-0.3.9/wakefield/R/r_dummy.R | 78 wakefield-0.3.9/wakefield/R/r_insert.R | 70 wakefield-0.3.9/wakefield/R/r_list.R | 206 - wakefield-0.3.9/wakefield/R/r_na.R | 108 wakefield-0.3.9/wakefield/R/r_sample.R | 46 wakefield-0.3.9/wakefield/R/r_sample_binary.R | 80 wakefield-0.3.9/wakefield/R/r_sample_factor.R | 54 wakefield-0.3.9/wakefield/R/r_sample_integer.R | 32 wakefield-0.3.9/wakefield/R/r_sample_logical.R | 42 wakefield-0.3.9/wakefield/R/r_sample_ordered.R | 66 wakefield-0.3.9/wakefield/R/r_sample_replace.R | 60 wakefield-0.3.9/wakefield/R/r_series.R | 256 - wakefield-0.3.9/wakefield/R/race.R | 68 wakefield-0.3.9/wakefield/R/relate.R | 144 wakefield-0.3.9/wakefield/R/religion.R | 122 wakefield-0.3.9/wakefield/R/sat.R | 44 wakefield-0.3.9/wakefield/R/second.R | 48 wakefield-0.3.9/wakefield/R/sentence.R | 40 wakefield-0.3.9/wakefield/R/seriesname.R | 40 wakefield-0.3.9/wakefield/R/sex.R | 70 wakefield-0.3.9/wakefield/R/sex_inclusive.R | 84 wakefield-0.3.9/wakefield/R/smokes.R | 36 wakefield-0.3.9/wakefield/R/speed.R | 106 wakefield-0.3.9/wakefield/R/state.R | 160 - wakefield-0.3.9/wakefield/R/string.R | 56 wakefield-0.3.9/wakefield/R/table_heat.R | 265 - wakefield-0.3.9/wakefield/R/time_stamp.R | 50 wakefield-0.3.9/wakefield/R/upper.R | 150 wakefield-0.3.9/wakefield/R/utils.R | 84 wakefield-0.3.9/wakefield/R/valid.R | 32 wakefield-0.3.9/wakefield/R/variables.R | 244 - wakefield-0.3.9/wakefield/R/varname.R | 82 wakefield-0.3.9/wakefield/R/wakefield-package.R | 225 - wakefield-0.3.9/wakefield/R/year.R | 50 wakefield-0.3.9/wakefield/R/zip_code.R | 56 wakefield-0.3.9/wakefield/README.md | 1534 +++++----- wakefield-0.3.9/wakefield/inst/CITATION | 31 wakefield-0.3.9/wakefield/man/age.Rd | 6 wakefield-0.3.9/wakefield/man/animal.Rd | 6 wakefield-0.3.9/wakefield/man/answer.Rd | 6 wakefield-0.3.9/wakefield/man/area.Rd | 6 wakefield-0.3.9/wakefield/man/car.Rd | 6 wakefield-0.3.9/wakefield/man/children.Rd | 6 wakefield-0.3.9/wakefield/man/coin.Rd | 6 wakefield-0.3.9/wakefield/man/color.Rd | 4 wakefield-0.3.9/wakefield/man/date_stamp.Rd | 6 wakefield-0.3.9/wakefield/man/death.Rd | 6 wakefield-0.3.9/wakefield/man/dice.Rd | 6 wakefield-0.3.9/wakefield/man/dna.Rd | 6 wakefield-0.3.9/wakefield/man/dob.Rd | 6 wakefield-0.3.9/wakefield/man/dummy.Rd | 6 wakefield-0.3.9/wakefield/man/education.Rd | 6 wakefield-0.3.9/wakefield/man/employment.Rd | 6 wakefield-0.3.9/wakefield/man/eye.Rd | 6 wakefield-0.3.9/wakefield/man/grade.Rd | 4 wakefield-0.3.9/wakefield/man/grade_level.Rd | 4 wakefield-0.3.9/wakefield/man/group.Rd | 6 wakefield-0.3.9/wakefield/man/hair.Rd | 6 wakefield-0.3.9/wakefield/man/height.Rd | 6 wakefield-0.3.9/wakefield/man/income.Rd | 6 wakefield-0.3.9/wakefield/man/internet_browser.Rd | 6 wakefield-0.3.9/wakefield/man/iq.Rd | 6 wakefield-0.3.9/wakefield/man/language.Rd | 6 wakefield-0.3.9/wakefield/man/letter.Rd | 6 wakefield-0.3.9/wakefield/man/level.Rd | 8 wakefield-0.3.9/wakefield/man/likert.Rd | 6 wakefield-0.3.9/wakefield/man/lorem_ipsum.Rd | 6 wakefield-0.3.9/wakefield/man/marital.Rd | 6 wakefield-0.3.9/wakefield/man/military.Rd | 6 wakefield-0.3.9/wakefield/man/month.Rd | 6 wakefield-0.3.9/wakefield/man/name.Rd | 6 wakefield-0.3.9/wakefield/man/normal.Rd | 6 wakefield-0.3.9/wakefield/man/peek.Rd | 2 wakefield-0.3.9/wakefield/man/plot.as_tibble.Rd |only wakefield-0.3.9/wakefield/man/political.Rd | 6 wakefield-0.3.9/wakefield/man/r_data.Rd | 7 wakefield-0.3.9/wakefield/man/r_data_frame.Rd | 4 wakefield-0.3.9/wakefield/man/r_dummy.Rd | 2 wakefield-0.3.9/wakefield/man/r_series.Rd | 4 wakefield-0.3.9/wakefield/man/race.Rd | 6 wakefield-0.3.9/wakefield/man/relate.Rd | 2 wakefield-0.3.9/wakefield/man/religion.Rd | 8 wakefield-0.3.9/wakefield/man/sat.Rd | 6 wakefield-0.3.9/wakefield/man/sentence.Rd | 6 wakefield-0.3.9/wakefield/man/sex.Rd | 4 wakefield-0.3.9/wakefield/man/sex_inclusive.Rd | 4 wakefield-0.3.9/wakefield/man/smokes.Rd | 6 wakefield-0.3.9/wakefield/man/speed.Rd | 6 wakefield-0.3.9/wakefield/man/state.Rd | 6 wakefield-0.3.9/wakefield/man/string.Rd | 6 wakefield-0.3.9/wakefield/man/table_heat.Rd | 2 wakefield-0.3.9/wakefield/man/valid.Rd | 6 wakefield-0.3.9/wakefield/man/wakefield-package.Rd |only wakefield-0.3.9/wakefield/man/year.Rd | 6 wakefield-0.3.9/wakefield/man/zip_code.Rd | 6 wakefield-0.3.9/wakefield/tests/testthat.R | 6 wakefield-0.3.9/wakefield/tests/testthat/test-age.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-animal.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-answer.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-area.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-as_integer.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-browser.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-car.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-children.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-coin.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-color.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-data_stamp.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-death.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-dice.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-dna.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-dob.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-dummy.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-education.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-employment.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-eye.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-grade.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-grade_level.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-group.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-hair.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-height.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-hour.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-id.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-income.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-interval.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-iq.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-language.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-level.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-likert.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-lorem_ipsum.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-marital.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-military.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-minute.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-month.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-name.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-normal.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-peek.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-political.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-probs.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_data.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_data_frame.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_dummy.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_insert.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_list.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_na.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_sample.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_sample_binary.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_sample_factor.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_sample_integer.R | 14 wakefield-0.3.9/wakefield/tests/testthat/test-r_sample_logical.R | 14 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Title: Functions to Help in your Coding Etiquette
Description: Adds some functions to help in your coding etiquette.
'tinycodet' primarily focuses on 4 aspects.
1) Safer decimal (in)equality testing,
standard-evaluated alternatives to with() and aes(),
and other functions for safer coding.
2) A new package import system,
that attempts to combine the benefits of using a package without attaching it,
with the benefits of attaching a package.
3) Extending the string manipulation capabilities of the 'stringi' R package.
4) Reducing repetitive code.
Besides linking to 'Rcpp', 'tinycodet' has only one other dependency, namely 'stringi'.
Author: Tony Wilkes [aut, cre, cph]
Maintainer: Tony Wilkes <tony_a_wilkes@outlook.com>
Diff between tinycodet versions 0.6.0 dated 2026-02-15 and 0.6.2 dated 2026-03-05
DESCRIPTION | 8 MD5 | 132 +- NEWS.md | 4 R/aaa2_tinycodet_import.R | 11 R/import_as.R | 2 R/import_data.R | 2 R/import_helper.R | 3 R/import_inops.R | 2 R/import_misc.R | 7 R/internal_functions.R | 17 inst/tinytest/import/test-import_general.R | 34 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/NAMESPACE | 16 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/R/tinycodetfakepkg1 | 54 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg1/html/R.css | 260 +-- inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/NAMESPACE | 16 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg2/html/R.css | 260 +-- inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/NAMESPACE | 24 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/R/tinycodetfakepkg3 | 54 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg3/html/R.css | 260 +-- inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg4/NAMESPACE | 6 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg4/R/tinycodetfakepkg4 | 54 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg4/html/R.css | 260 +-- inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg5/NAMESPACE | 8 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg5/R/tinycodetfakepkg5 | 54 inst/tinytest/special/fakelibs/fake_lib1/tinycodetfakepkg5/html/R.css | 260 +-- inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/NAMESPACE | 24 inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/R/tinycodetfakepkg3 | 54 inst/tinytest/special/fakelibs/fake_lib2/tinycodetfakepkg3/html/R.css | 260 +-- inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/NAMESPACE | 16 inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/R/tinycodetfakepkg1 | 54 inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg1/html/R.css | 260 +-- inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/NAMESPACE | 16 inst/tinytest/special/fakelibs/fake_lib3/tinycodetfakepkg2/html/R.css | 260 +-- inst/tinytest/special/fakelibs/newlib/tinycodetfakepkg1/NAMESPACE | 16 inst/tinytest/special/fakelibs/newlib/tinycodetfakepkg1/R/tinycodetfakepkg1 | 54 inst/tinytest/special/fakelibs/newlib/tinycodetfakepkg1/html/R.css | 260 +-- man/aaa0_tinycodet_help.Rd | 120 - man/aaa1_tinycodet_safer.Rd | 66 - man/aaa2_tinycodet_import.Rd | 369 ++--- man/aaa3_tinycodet_strings.Rd | 164 +- man/aaa4_tinycodet_dry.Rd | 72 - man/aaa5_tinycodet_misc.Rd | 34 man/decimal_truth.Rd | 312 ++-- man/import_as.Rd | 364 ++--- man/import_data.Rd | 78 - man/import_helper.Rd | 259 +-- man/import_inops.Rd | 244 +-- man/import_inops.control.Rd | 156 +- man/import_misc.Rd | 232 +-- man/lock.Rd | 174 +- man/logic_ops.Rd | 242 +-- man/matrix_ops.Rd | 142 +- man/pkgs.Rd | 320 ++-- man/pro.Rd | 210 +-- man/pversion.Rd | 130 - man/reexports.Rd | 36 man/report_inops.Rd | 92 - man/s_pattern.Rd | 324 ++-- man/safer_partialmatch.Rd | 88 - man/source_selection.Rd | 198 +-- man/str_arithmetic.Rd | 232 +-- man/str_search.Rd | 652 +++++----- man/str_subset_ops.Rd | 182 +- man/strcut.Rd | 254 +-- man/stri_join_mat.Rd | 204 +-- man/stri_locate_ith.Rd | 616 ++++----- man/transform_if.Rd | 172 +- 67 files changed, 4950 insertions(+), 4870 deletions(-)
Title: Scientific Analysis of Trial Errors (SATE)
Description: Bundles functions used to analyze the harmfulness of trial errors in criminal trials.
Functions in the Scientific Analysis of Trial Errors ('sate') package help users estimate the
probability that a jury will find a defendant guilty given jurors' preferences for a guilty
verdict and the uncertainty of that estimate. Users can also compare actual and hypothetical
trial conditions to conduct harmful error analysis. The conceptual framework is discussed
by Barry Edwards, A Scientific Framework for Analyzing the Harmfulness of Trial Errors,
UCLA Criminal Justice Law Review (2024) <doi:10.5070/CJ88164341> and Barry Edwards,
If The Jury Only Knew: The Effect Of Omitted Mitigation Evidence On The Probability Of A Death Sentence,
Virginia Journal of Social Policy & the Law (2025)
<https://vasocialpolicy.org/wp-content/uploads/2025/05/Edwards-If-The-Jury-Only-Knew.pdf>.
The relationship between individual jurors'
verdict preferences and the probability that a jury returns a guil [...truncated...]
Author: Barry Edwards [aut, cre]
Maintainer: Barry Edwards <bce@uga.edu>
Diff between sate versions 3.1.0 dated 2025-11-05 and 3.1.1 dated 2026-03-05
DESCRIPTION | 8 MD5 | 78 ++++---- NEWS.md | 16 + R/as.jury.point.r | 104 +++++++++-- R/as.jury.stats.r | 106 ++++++++---- R/basic.plot.grid.R | 8 R/compare.juror.stats.R | 24 +- R/compare.jury.stats.r | 106 ++++++++---- R/deliberate.civil.r | 27 +-- R/deliberate.r | 26 +- R/encode.cloud.respondent.variables.R | 40 ++++ R/get_pG_by_k.r | 20 +- R/graph.effect.defendant.r | 115 +++++++------ R/graph.estimate.r | 68 ++++--- R/helper.functions.r | 270 ++++++++++++++++++++++++++----- R/prob.ordered.verdicts.R | 18 +- R/prob_ord_from_pool.R | 72 ++++++-- R/select.with.strikes.r | 15 - R/sim.as.jury.stats.r | 104 +++++------ R/sim.compare.jury.stats.r | 36 ++-- R/transition.matrix.R | 8 R/transition.matrix.ordered.R | 65 ++++--- R/weights_for_population.R | 142 +++++++++++++--- man/as.jury.point.Rd | 12 + man/as.jury.stats.Rd | 14 + man/basic.plot.grid.Rd | 8 man/compare.jury.stats.Rd | 10 + man/deliberate.Rd | 4 man/deliberate.civil.Rd | 4 man/encode.cloud.respondent.variables.Rd | 4 man/get_pG_by_k.Rd | 2 man/graph.effect.defendant.Rd | 9 - man/graph.estimate.Rd | 9 - man/prob_ord_from_pool.Rd | 6 man/sim.as.jury.stats.Rd | 6 man/sim.compare.jury.stats.Rd | 4 man/transition.matrix.ordered.Rd | 20 +- man/weights_for_population.Rd | 10 - tests |only 39 files changed, 1128 insertions(+), 470 deletions(-)
Title: Multivariate Generalized Gaussian Distribution, Multivariate t
Distribution, Multivariate Cauchy Distribution, Statistical
Divergence
Description: Multivariate generalized Gaussian distribution,
Multivariate Cauchy distribution,
Multivariate t distribution.
Distance between two distributions (see N. Bouhlel and A. Dziri (2019): <doi:10.1109/LSP.2019.2915000>,
N. Bouhlel and D. Rousseau (2022): <doi:10.3390/e24060838>,
N. Bouhlel and D. Rousseau (2023): <doi:10.1109/LSP.2023.3324594>).
Manipulation of these multivariate probability distributions.
This package replaces 'mggd', 'mcauchyd' and 'mstudentd'.
Author: Pierre Santagostini [aut, cre],
Nizar Bouhlel [aut]
Maintainer: Pierre Santagostini <pierre.santagostini@institut-agro.fr>
Diff between multvardiv versions 1.0.14 dated 2026-01-27 and 1.0.15 dated 2026-03-05
DESCRIPTION | 10 ++++++---- MD5 | 4 ++-- NEWS.md | 8 ++++++++ 3 files changed, 16 insertions(+), 6 deletions(-)
Title: Easy Visualization of Conditional Effects from Regression Models
Description: Offers a flexible and user-friendly interface for visualizing conditional
effects from a broad range of regression models, including mixed-effects and generalized
additive (mixed) models. Compatible model types include lm(), rlm(), glm(), glm.nb(),
betareg(), and gam() (from 'mgcv'); nonlinear models via nls(); generalized least
squares via gls(); and survival models via coxph() (from 'survival').
Mixed-effects models with random intercepts and/or slopes can be fitted using lmer(),
glmer(), glmer.nb(), glmmTMB(), or gam() (from 'mgcv', via smooth terms).
Plots are rendered using base R graphics with extensive customization options.
Approximate confidence intervals for nls() and betareg() models are computed using
the delta method. Robust standard errors for rlm() are computed using the sandwich
estimator (Zeileis 2004) <doi:10.18637/jss.v011.i10>. For beta regression using
'betareg', see Cribari-Neto and Zeileis (2010) <doi:10.18637/jss.v034.i02>. For
mixed-effects models w [...truncated...]
Author: Luca Corlatti [aut, cre]
Maintainer: Luca Corlatti <lucac1980@yahoo.it>
Diff between easyViz versions 2.0.2 dated 2026-02-25 and 2.1.0 dated 2026-03-05
DESCRIPTION | 12 +- MD5 | 16 +-- NEWS.md | 24 ++++ R/easyViz.R | 259 ++++++++++++++++++++++++++++++--------------------- R/ez-backtransform.R | 145 +++++++++++++++------------- R/ez-build-output.R | 15 ++ R/ez-prepare-data.R | 14 +- R/ez-utils.R | 58 +++++++---- man/easyViz.Rd | 184 +++++++++++++++++++++++------------- 9 files changed, 449 insertions(+), 278 deletions(-)
Title: Leakage-Safe Modeling and Auditing for Genomic and Clinical Data
Description: Prevents and detects information leakage in biomedical machine learning.
Provides leakage-resistant split policies (subject-grouped, batch-blocked, study leave-out, time-ordered),
guarded preprocessing (train-only imputation, normalization, filtering, feature selection),
cross-validated fitting with common learners, permutation-gap auditing, batch and fold association tests,
and duplicate detection.
Author: Selcuk Korkmaz [aut, cre]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between bioLeak versions 0.2.0 dated 2026-02-11 and 0.3.0 dated 2026-03-05
DESCRIPTION | 8 MD5 | 95 NAMESPACE | 4 NEWS.md | 52 R/audit.R | 294 ++ R/audit_report.R | 3 R/benchmark_suite.R |only R/classes.R | 3 R/conditions.R |only R/cv_uncertainty.R |only R/diagnostics_extra.R | 9 R/fit_resample.R | 139 + R/guard_to_recipe.R |only R/guards.R | 20 R/make_split_plan.R | 331 ++ R/permute_labels.R | 31 R/provenance.R |only R/simulate_suite.R | 4 R/summary.R | 12 R/tidymodels.R | 123 + R/tune_resample.R | 145 - README.md | 3 build/vignette.rds |binary inst/doc/bioLeak-intro.R | 97 inst/doc/bioLeak-intro.Rmd | 249 ++ inst/doc/bioLeak-intro.html | 2986 +++++++++++++++------------ inst/reports/audit_report.Rmd | 142 + man/LeakClasses.Rd | 3 man/audit_leakage.Rd | 44 man/audit_leakage_by_learner.Rd | 5 man/audit_report.Rd | 3 man/benchmark_leakage_suite.Rd |only man/check_split_overlap.Rd |only man/cv_ci.Rd |only man/dot-bio_capture_provenance.Rd |only man/dot-nb_corrected_var.Rd |only man/fit_resample.Rd | 4 man/guard_to_recipe.Rd |only man/make_split_plan.Rd | 27 man/simulate_leakage_suite.Rd | 2 man/tune_resample.Rd | 8 tests/testthat/helper-fixtures.R | 4 tests/testthat/test-audit-diagnostics.R | 52 tests/testthat/test-audit-report-expanded.R |only tests/testthat/test-benchmark-suite.R |only tests/testthat/test-check-split-overlap.R |only tests/testthat/test-combined-splits.R |only tests/testthat/test-condition-classes.R |only tests/testthat/test-cv-uncertainty.R |only tests/testthat/test-failure-mode-messaging.R |only tests/testthat/test-guard-to-recipe.R |only tests/testthat/test-invariants.R |only tests/testthat/test-n-axis-constraints.R |only tests/testthat/test-plotting.R | 159 - tests/testthat/test-provenance.R |only tests/testthat/test-scalability-threshold.R |only tests/testthat/test-strict-mode.R |only tests/testthat/test-tidymodels-interop.R | 175 - tests/testthat/test-tune-resample.R | 158 + tests/testthat/test-validation-policy.R |only vignettes/bioLeak-intro.Rmd | 249 ++ 61 files changed, 3927 insertions(+), 1716 deletions(-)
More information about APCinteraction at CRAN
Permanent link
Title: Linear Mixed-Effects Models using 'Eigen' and S4
Description: Fit linear and generalized linear mixed-effects models. The
models and their components are represented using S4 classes and
methods. The core computational algorithms are implemented using
the 'Eigen' C++ library for numerical linear algebra and
'RcppEigen' "glue".
Author: Douglas Bates [aut] ,
Martin Maechler [aut] ,
Ben Bolker [cre, aut] ,
Steven Walker [aut] ,
Rune Haubo Bojesen Christensen [ctb] ,
Henrik Singmann [ctb] ,
Bin Dai [ctb],
Fabian Scheipl [ctb] ,
Gabor Grothendieck [ctb],
Peter Green [ctb] ,
John Fox [c [...truncated...]
Maintainer: Ben Bolker <bbolker+lme4@gmail.com>
Diff between lme4 versions 1.1-38 dated 2025-12-02 and 2.0-1 dated 2026-03-05
lme4-1.1-38/lme4/man/cbpp2.Rd |only lme4-1.1-38/lme4/vignettes/downstream_methods.html |only lme4-2.0-1/lme4/DESCRIPTION | 110 + lme4-2.0-1/lme4/MD5 | 130 +- lme4-2.0-1/lme4/NAMESPACE | 46 lme4-2.0-1/lme4/R/AllClass.R | 2 lme4-2.0-1/lme4/R/VarCorr.R |only lme4-2.0-1/lme4/R/allFit.R | 45 lme4-2.0-1/lme4/R/bootMer.R | 53 lme4-2.0-1/lme4/R/checkConv.R | 8 lme4-2.0-1/lme4/R/covariance.R |only lme4-2.0-1/lme4/R/lmer.R | 568 +++------- lme4-2.0-1/lme4/R/methods.R | 55 lme4-2.0-1/lme4/R/modular.R | 353 ++++-- lme4-2.0-1/lme4/R/predict.R | 112 + lme4-2.0-1/lme4/R/profile.R | 242 ++-- lme4-2.0-1/lme4/R/reformulas_imports.R | 7 lme4-2.0-1/lme4/R/utilities.R | 94 + lme4-2.0-1/lme4/R/vcconv.R | 2 lme4-2.0-1/lme4/R/zzz.R | 15 lme4-2.0-1/lme4/build/partial.rdb |binary lme4-2.0-1/lme4/build/vignette.rds |binary lme4-2.0-1/lme4/inst/NEWS.Rd | 287 +++-- lme4-2.0-1/lme4/inst/doc/PLSvGLS.pdf |binary lme4-2.0-1/lme4/inst/doc/Theory.pdf |binary lme4-2.0-1/lme4/inst/doc/autoscale.html | 5 lme4-2.0-1/lme4/inst/doc/covariance_structures.R |only lme4-2.0-1/lme4/inst/doc/covariance_structures.Rmd |only lme4-2.0-1/lme4/inst/doc/covariance_structures.html |only lme4-2.0-1/lme4/inst/doc/lmer.R | 348 ++++++ lme4-2.0-1/lme4/inst/doc/lmer.pdf |binary lme4-2.0-1/lme4/inst/testdata/Contraception.rds |only lme4-2.0-1/lme4/inst/testdata/test-covariance_structures_data.R |only lme4-2.0-1/lme4/inst/testdata/test-covariance_structures_data.rds |only lme4-2.0-1/lme4/man/Covariance-class.Rd |only lme4-2.0-1/lme4/man/VarCorr.Rd | 43 lme4-2.0-1/lme4/man/allFit.Rd | 15 lme4-2.0-1/lme4/man/cbpp.Rd | 43 lme4-2.0-1/lme4/man/checkConv.Rd | 5 lme4-2.0-1/lme4/man/confint.merMod.Rd | 6 lme4-2.0-1/lme4/man/devfun2.Rd | 13 lme4-2.0-1/lme4/man/getDoublevertDefault.Rd |only lme4-2.0-1/lme4/man/getME.Rd | 19 lme4-2.0-1/lme4/man/getReCovs.Rd |only lme4-2.0-1/lme4/man/glmer.Rd | 29 lme4-2.0-1/lme4/man/influence.merMod.Rd | 20 lme4-2.0-1/lme4/man/isNewMerMod.Rd |only lme4-2.0-1/lme4/man/isSingular.Rd | 13 lme4-2.0-1/lme4/man/lmer.Rd | 118 +- lme4-2.0-1/lme4/man/mkVarCorr.Rd | 37 lme4-2.0-1/lme4/man/modular.Rd | 8 lme4-2.0-1/lme4/man/nlmer.Rd | 2 lme4-2.0-1/lme4/man/reformulas_imports.Rd | 5 lme4-2.0-1/lme4/man/utilities.Rd | 22 lme4-2.0-1/lme4/src/predModule.cpp | 2 lme4-2.0-1/lme4/tests/bootMer.R | 2 lme4-2.0-1/lme4/tests/confint.R | 1 lme4-2.0-1/lme4/tests/profile-tst.R | 2 lme4-2.0-1/lme4/tests/testthat/setup.R |only lme4-2.0-1/lme4/tests/testthat/test-allFit.R | 2 lme4-2.0-1/lme4/tests/testthat/test-covariance_nlmer.R |only lme4-2.0-1/lme4/tests/testthat/test-covariance_structures.R |only lme4-2.0-1/lme4/tests/testthat/test-doubleVertNotation.R | 33 lme4-2.0-1/lme4/tests/testthat/test-formulaEval.R | 7 lme4-2.0-1/lme4/tests/testthat/test-glmer.R | 5 lme4-2.0-1/lme4/tests/testthat/test-isSingular.R |only lme4-2.0-1/lme4/tests/testthat/test-lmer.R | 22 lme4-2.0-1/lme4/tests/testthat/test-methods.R | 157 +- lme4-2.0-1/lme4/tests/testthat/test-predict.R | 39 lme4-2.0-1/lme4/tests/testthat/test-reformulas-import.R | 5 lme4-2.0-1/lme4/tests/testthat/test-resids.R | 17 lme4-2.0-1/lme4/tests/testthat/test-start.R | 6 lme4-2.0-1/lme4/tests/testthat/test-summary_testlevel_1.rda |binary lme4-2.0-1/lme4/tests/testthat/test-weights.R |only lme4-2.0-1/lme4/vignettes/covariance_structures.Rmd |only lme4-2.0-1/lme4/vignettes/lmer.bib | 47 76 files changed, 1995 insertions(+), 1232 deletions(-)
Title: Tidy Intensive Longitudinal Data Analysis
Description: An opinionated, tidyverse-native toolkit for intensive longitudinal
data (ILD). Encodes time structure, enforces within-between decomposition,
provides spacing-aware lags, and integrates diagnostics and visualization.
Use ild_prepare(), ild_center(), ild_lag(), and related functions for a
unified pipeline from raw EMA/diary data to interpretable models.
Author: Alex Litovchenko [aut, cre]
Maintainer: Alex Litovchenko <al4877@columbia.edu>
Diff between tidyILD versions 0.0.1 dated 2026-02-13 and 0.2.0 dated 2026-03-05
DESCRIPTION | 24 +- MD5 | 133 ++++++++++----- NAMESPACE | 22 ++ NEWS.md | 9 + R/ild-class.R | 71 +++++++- R/ild_acf.R |only R/ild_align.R |only R/ild_center.R | 32 ++- R/ild_check_lags.R | 26 +- R/ild_circadian.R |only R/ild_crosslag.R |only R/ild_decomposition.R |only R/ild_design_check.R |only R/ild_diagnostics.R | 245 +++++++++++++++++++--------- R/ild_lag.R | 31 +++ R/ild_lme.R | 86 +++++++++ R/ild_missing_bias.R |only R/ild_missing_pattern.R | 68 ++++++- R/ild_model_tidiers.R |only R/ild_person_model.R |only R/ild_plot.R | 123 +++++++++----- R/ild_power.R |only R/ild_simulate.R | 45 ++++- R/ild_spacing.R |only R/ild_summary.R | 38 +++- R/package.R |only README.md | 44 ++++- build/vignette.rds |binary inst/doc/ild-analysis-report.R |only inst/doc/ild-analysis-report.Rmd |only inst/doc/ild-analysis-report.html |only inst/doc/ild-decomposition-and-spacing.html | 4 inst/doc/ild-glossary-and-quickstart.html | 4 inst/doc/tidyILD-workflow.R | 8 inst/doc/tidyILD-workflow.Rmd | 8 inst/doc/tidyILD-workflow.html | 125 +++++++++----- man/as_ild.Rd | 4 man/augment_ild_model.Rd |only man/ild_acf.Rd |only man/ild_align.Rd |only man/ild_center.Rd | 18 +- man/ild_center_plot.Rd |only man/ild_check_lags.Rd | 7 man/ild_circadian.Rd |only man/ild_crosslag.Rd |only man/ild_decomposition.Rd |only man/ild_design_check.Rd |only man/ild_diagnostics.Rd | 41 ++++ man/ild_heatmap.Rd |only man/ild_lag.Rd | 12 - man/ild_lme.Rd | 25 ++ man/ild_missing_bias.Rd |only man/ild_missing_pattern.Rd | 24 +- man/ild_person_distribution.Rd |only man/ild_person_model.Rd |only man/ild_plot.Rd | 21 +- man/ild_power.Rd |only man/ild_simulate.Rd | 33 ++- man/ild_spacing.Rd |only man/ild_spaghetti.Rd |only man/ild_summary.Rd | 7 man/plot_ild_diagnostics.Rd |only man/tidyILD-package.Rd |only man/tidy_ild_model.Rd |only man/validate_ild.Rd | 3 tests/testthat/test-ild-class.R | 3 tests/testthat/test-ild-contract.R |only tests/testthat/test-ild_acf.R |only tests/testthat/test-ild_align.R |only tests/testthat/test-ild_center.R | 15 + tests/testthat/test-ild_check_lags.R | 14 + tests/testthat/test-ild_circadian.R |only tests/testthat/test-ild_crosslag.R |only tests/testthat/test-ild_decomposition.R |only tests/testthat/test-ild_design_check.R |only tests/testthat/test-ild_diagnostics_plot.R | 87 +++++++++ tests/testthat/test-ild_lag.R | 11 + tests/testthat/test-ild_lag_time_window.R | 12 + tests/testthat/test-ild_lme.R | 72 ++++++++ tests/testthat/test-ild_manifest.R | 2 tests/testthat/test-ild_missing_bias.R |only tests/testthat/test-ild_missing_pattern.R | 17 + tests/testthat/test-ild_model_tidiers.R |only tests/testthat/test-ild_person_model.R |only tests/testthat/test-ild_power.R |only tests/testthat/test-ild_prepare.R | 22 ++ tests/testthat/test-ild_simulate.R |only tests/testthat/test-ild_spacing.R |only tests/testthat/test-ild_summary.R | 4 vignettes/ild-analysis-report.Rmd |only vignettes/tidyILD-workflow.Rmd | 8 91 files changed, 1253 insertions(+), 355 deletions(-)
Title: Semiparametric Likelihood Estimation with Errors in Variables
Description: Efficient regression analysis under general two-phase sampling, where Phase I includes error-prone data and Phase II contains validated data on a subset.
Author: Sarah Lotspeich [aut],
Ran Tao [aut, cre],
Joey Sherrill [prg],
Jiangmei Xiong [ctb],
Shawn Garbett [prg]
Maintainer: Ran Tao <r.tao@vanderbilt.edu>
Diff between sleev versions 1.1.6 dated 2025-11-17 and 1.2.0 dated 2026-03-05
DESCRIPTION | 20 - MD5 | 24 - NAMESPACE | 1 R/RcppExports.R | 12 R/logistic2ph.R | 631 +++++++++++++++------------------------ R/observed_data_loglik.R | 132 +++----- R/pl_theta.R | 101 +++--- R/profile_out.R | 250 +++------------ inst/doc/sleev_vignette_file.pdf |binary man/logistic2ph.Rd | 2 src/RcppExports.cpp | 82 +++++ src/logistic2ph_em_loop.cpp |only src/observed_data_loglik.cpp |only src/profile_out_em.cpp |only src/sleev_api.h |only 15 files changed, 557 insertions(+), 698 deletions(-)
Title: Shiny Matrix Input Field
Description: Implements a custom matrix input field.
Author: Andreas Neudecker [aut, cre]
Maintainer: Andreas Neudecker <andreas.neudecker@inwt-statistics.de>
Diff between shinyMatrix versions 0.8.0 dated 2024-04-10 and 0.8.1 dated 2026-03-05
DESCRIPTION | 20 ++++++++++++-------- MD5 | 8 ++++---- NEWS.md | 4 ++++ R/matrixInput.R | 2 +- README.md | 8 ++++---- 5 files changed, 25 insertions(+), 17 deletions(-)
Title: Efficient Computation and Testing of the Bergsma-Dassios Sign
Covariance
Description: Computes the t* statistic corresponding to the tau* population
coefficient introduced by Bergsma and Dassios (2014) <DOI:10.3150/13-BEJ514>
and does so in O(n^2) time following the algorithm of Heller and
Heller (2016) <DOI:10.48550/arXiv.1605.08732> building off of the work of Weihs,
Drton, and Leung (2016) <DOI:10.1007/s00180-015-0639-x>. Also allows for
independence testing using the asymptotic distribution of t* as described by
Nandy, Weihs, and Drton (2016) <DOI:10.1214/16-EJS1166>.
Author: Luca Weihs [aut],
Emin Martinian [ctb] ,
Julian D. Karch [cre]
Maintainer: Julian D. Karch <j.d.karch@fsw.leidenuniv.nl>
Diff between TauStar versions 1.1.8 dated 2025-08-25 and 1.1.9 dated 2026-03-05
DESCRIPTION | 7 +++---- MD5 | 6 +++--- NEWS.md | 2 ++ src/RcppExports.cpp | 26 +++++++++++++------------- 4 files changed, 21 insertions(+), 20 deletions(-)
Title: External jars for 'rjdverse' R Packages
Description: It provides external jars required for the 'rjdverse' (as 'rjd3toolkit', 'rjd3x13' and 'rjd3tramoseats').
Author: Tanguy Barthelemy [aut, cre]
Maintainer: Tanguy Barthelemy <tanguy.barthelemy@insee.fr>
Diff between rjd3jars versions 0.0.1 dated 2025-12-15 and 0.0.2 dated 2026-03-05
DESCRIPTION | 6 +++--- MD5 | 8 +++++--- NEWS.md |only R/zzz.R | 25 ++++++++++++++++++------- README.md |only man/jd3_utilities.Rd | 9 +++++++-- 6 files changed, 33 insertions(+), 15 deletions(-)
Title: 'Rcpp' Integration for 'GNU GSL' Vectors and Matrices
Description: 'Rcpp' integration for 'GNU GSL' vectors and matrices
The 'GNU Scientific Library' (or 'GSL') is a collection of numerical routines for
scientific computing. It is particularly useful for C and C++ programs as it
provides a standard C interface to a wide range of mathematical routines. There
are over 1000 functions in total with an extensive test suite. The 'RcppGSL'
package provides an easy-to-use interface between 'GSL' data structures and
R using concepts from 'Rcpp' which is itself a package that eases the
interfaces between R and C++. This package also serves as a prime example of
how to build a package that uses 'Rcpp' to connect to another third-party
library. The 'autoconf' script, 'inline' plugin and example package can all
be used as a stanza to write a similar package against another library.
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppGSL versions 0.3.13 dated 2023-01-12 and 0.3.14 dated 2026-03-05
RcppGSL-0.3.13/RcppGSL/inst/doc/RcppGSL-intro.Rnw |only RcppGSL-0.3.13/RcppGSL/inst/doc/RcppGSL-intro.pdf |only RcppGSL-0.3.13/RcppGSL/src/init.c |only RcppGSL-0.3.13/RcppGSL/vignettes/RcppGSL-intro.Rnw |only RcppGSL-0.3.13/RcppGSL/vignettes/RcppGSL-introduction.pdf |only RcppGSL-0.3.14/RcppGSL/ChangeLog | 52 + RcppGSL-0.3.14/RcppGSL/DESCRIPTION | 22 RcppGSL-0.3.14/RcppGSL/MD5 | 36 - RcppGSL-0.3.14/RcppGSL/NAMESPACE | 6 RcppGSL-0.3.14/RcppGSL/R/RcppExports.R | 10 RcppGSL-0.3.14/RcppGSL/R/fastLm.R | 4 RcppGSL-0.3.14/RcppGSL/README.md | 10 RcppGSL-0.3.14/RcppGSL/build/partial.rdb |binary RcppGSL-0.3.14/RcppGSL/build/vignette.rds |binary RcppGSL-0.3.14/RcppGSL/configure | 267 ++++------ RcppGSL-0.3.14/RcppGSL/configure.ac | 6 RcppGSL-0.3.14/RcppGSL/inst/NEWS.Rd | 13 RcppGSL-0.3.14/RcppGSL/inst/doc/RcppGSL-introduction.pdf |only RcppGSL-0.3.14/RcppGSL/inst/doc/RcppGSL-introduction.pdf.asis |only RcppGSL-0.3.14/RcppGSL/inst/examples/RcppGSLExample/src/colNorm_old.cpp | 26 RcppGSL-0.3.14/RcppGSL/src/RcppExports.cpp | 56 +- RcppGSL-0.3.14/RcppGSL/src/fastLm.cpp | 4 RcppGSL-0.3.14/RcppGSL/vignettes/RcppGSL-introduction.pdf.asis |only 23 files changed, 298 insertions(+), 214 deletions(-)
Title: Creates Co-Occurrence Matrices of Spatial Data
Description: Builds co-occurrence matrices based on spatial raster data.
It includes creation of weighted co-occurrence matrices (wecoma) and
integrated co-occurrence matrices
(incoma; Vadivel et al. (2007) <doi:10.1016/j.patrec.2007.01.004>).
Author: Jakub Nowosad [aut, cre] ,
Maximillian H.K. Hesselbarth [ctb] , get_unique_values, and rcpp_get_coma
functions),
Marco Sciaini [ctb] , get_unique_values, and rcpp_get_coma
functions),
Sebastian Hanss [ctb] , get_unique_values, and rcpp_get_coma
funct [...truncated...]
Maintainer: Jakub Nowosad <nowosad.jakub@gmail.com>
Diff between comat versions 0.9.6 dated 2025-09-26 and 0.9.7 dated 2026-03-05
DESCRIPTION | 6 ++--- MD5 | 16 +++++++-------- NEWS.md | 4 +++ build/partial.rdb |binary build/vignette.rds |binary inst/doc/coma.html | 4 +-- inst/doc/incoma.html | 4 +-- inst/doc/wecoma.html | 4 +-- src/RcppExports.cpp | 52 +++++++++++++++++++++++++-------------------------- 9 files changed, 47 insertions(+), 43 deletions(-)
Title: Multidimensional Scaling of Asymmetric Proximities
Description: Multidimensional scaling models and methods for the visualization and analysis of asymmetric proximity data. An asymmetric data matrix has the same number of rows and columns, and these rows and columns refer to the same set of objects. At least some elements in the upper-triangle are different from the corresponding elements in the lower triangle. An example of an asymmetric matrix is a student migration table, where the rows correspond to the countries of origin of the students and the columns to the destination countries. This package provides algorithms for three multidimensional scaling models, the slide-vector model, a scaling model with unique dimensions and the asymscal model. Furthermore, some other procedures, such as a heat map for skew-symmetric data, and the decomposition of asymmetry are also provided for the exploratory analysis of asymmetric tables.
Author: Berrie Zielman [aut, cre]
Maintainer: Berrie Zielman <berrie.zielman@gmail.com>
Diff between asymmetry versions 2.0.5 dated 2025-10-02 and 2.0.6 dated 2026-03-05
asymmetry-2.0.5/asymmetry/build/partial.rdb |only asymmetry-2.0.5/asymmetry/man/asymmetry-package.Rd |only asymmetry-2.0.6/asymmetry/DESCRIPTION | 12 +- asymmetry-2.0.6/asymmetry/MD5 | 31 ++--- asymmetry-2.0.6/asymmetry/NAMESPACE | 3 asymmetry-2.0.6/asymmetry/R/hmap.R | 53 +++------ asymmetry-2.0.6/asymmetry/R/slidevector.R | 1 asymmetry-2.0.6/asymmetry/README.md |only asymmetry-2.0.6/asymmetry/build/vignette.rds |binary asymmetry-2.0.6/asymmetry/inst/doc/asymmetry.R | 62 ----------- asymmetry-2.0.6/asymmetry/inst/doc/asymmetry.Rmd | 68 ------------ asymmetry-2.0.6/asymmetry/inst/doc/asymmetry.html | 118 +++++++++------------ asymmetry-2.0.6/asymmetry/man/asymscal.Rd | 7 - asymmetry-2.0.6/asymmetry/man/hmap.Rd | 10 + asymmetry-2.0.6/asymmetry/man/productsafety.Rd | 3 asymmetry-2.0.6/asymmetry/man/slidevector.Rd | 6 - asymmetry-2.0.6/asymmetry/man/studentmigration.Rd | 6 - asymmetry-2.0.6/asymmetry/vignettes/asymmetry.Rmd | 68 ------------ 18 files changed, 114 insertions(+), 334 deletions(-)
Title: System Native Font Finding
Description: Provides system native access to the font catalogue. As font
handling varies between systems it is difficult to correctly locate
installed fonts across different operating systems. The 'systemfonts'
package provides bindings to the native libraries on Windows, macOS
and Linux for finding font files that can then be used further by e.g.
graphic devices. The main use is intended to be from compiled code but
'systemfonts' also provides access from R.
Author: Thomas Lin Pedersen [aut, cre] ,
Jeroen Ooms [aut] ,
Devon Govett [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Thomas Lin Pedersen <thomas.pedersen@posit.co>
Diff between systemfonts versions 1.3.1 dated 2025-10-01 and 1.3.2 dated 2026-03-05
DESCRIPTION | 6 ++--- MD5 | 38 ++++++++++++++++++------------------ NEWS.md | 7 ++++++ R/dev_strings.R | 16 +++++++-------- R/emoji.R | 6 ++--- R/font_fallback.R | 8 +++---- R/font_info.R | 36 +++++++++++++++++----------------- R/font_outline.R | 10 ++++----- R/match_fonts.R | 8 +++---- R/shape_string.R | 48 +++++++++++++++++++++++----------------------- R/web_fonts.R | 8 +++---- R/zzz.R | 5 ++++ README.md | 24 +++++++++++------------ build/vignette.rds |binary configure | 2 + inst/doc/systemfonts.html | 6 ++--- src/font_fallback.cpp | 33 ++++++++++++++++++++++++++++++- src/font_matching.cpp | 6 ++--- src/ft_cache.cpp | 10 +++++++-- src/mac/FontManagerMac.mm | 47 +++++++++++++++++++++++++++++++++++++++++++++ 20 files changed, 211 insertions(+), 113 deletions(-)
Title: Estimation in Difference-in-Difference Designs with Multiple
Groups and Periods
Description: Estimation of heterogeneity-robust difference-in-differences estimators, with a binary, discrete, or continuous treatment, in designs where past treatments may affect the current outcome.
Author: Anzony Quispe [aut, cre],
Diego Ciccia [aut],
Felix Knau [aut],
Melitine Malezieux [aut],
Doulo Sow [aut],
Clement de Chaisemartin [aut]
Maintainer: Anzony Quispe <anzony.quispe@gmail.com>
Diff between DIDmultiplegtDYN versions 2.3.1 dated 2026-02-25 and 2.3.2 dated 2026-03-05
DESCRIPTION | 6 - MD5 | 18 ++-- R/RcppExports.R | 20 ++++ R/did_multiplegt_bootstrap.R | 54 ++++++------ R/did_multiplegt_dyn_design.R | 4 R/did_multiplegt_dyn_dfs.R | 4 R/did_multiplegt_dyn_normweights.R | 4 R/did_save_sample.R | 8 + src/RcppExports.cpp | 64 ++++++++++++++ src/did_loops.cpp | 164 +++++++++++++++++++++++++++++++++++++ 10 files changed, 303 insertions(+), 43 deletions(-)
More information about DIDmultiplegtDYN at CRAN
Permanent link
Title: Case-Control Likelihood Ratio (ccLR)
Description: Implementation of case-control data analysis using likelihood ratio
approaches and logistic regression for the classification of variants of
uncertain significance (VUS) in breast, ovarian, or custom cancer
susceptibility genes.
Author: Damianos Michaelides [aut, cre],
Maria Zanti [aut],
Denise O' Mahony [aut],
Christian Carrizosa [aut],
Theodora Nearchou [aut],
Kyriaki Michailidou [aut]
Maintainer: Damianos Michaelides <damianosm@cing.ac.cy>
Diff between ccLRforR versions 1.0 dated 2026-03-03 and 1.1 dated 2026-03-05
DESCRIPTION | 10 +++++----- MD5 | 16 +++++++++------- NAMESPACE | 6 +++--- R/ccLR_imp.R |only R/hidden.R | 20 ++++++++++++++++++++ build/partial.rdb |binary man/PS4_ccLR.Rd | 6 +++--- man/ccLR_grid.Rd | 6 +++--- man/ccLR_imp.Rd |only man/ccLRforR-package.Rd | 11 +++++++++-- 10 files changed, 52 insertions(+), 23 deletions(-)
Title: Download Mexico City Pollution, Wind, and Temperature Data
Description: Tools for downloading hourly averages, daily maximums and
minimums from each of the pollution, wind, and temperature measuring
stations or geographic zones in the Mexico City metro area. The
package also includes the locations of each of the stations and zones.
See <http://aire.cdmx.gob.mx/> for more information.
Author: Diego Valle-Jones [aut, cre]
Maintainer: Diego Valle-Jones <diego@diegovalle.net>
Diff between aire.zmvm versions 1.0.0 dated 2024-06-26 and 1.0.1 dated 2026-03-05
aire.zmvm-1.0.0/aire.zmvm/man/figures/README-unnamed-chunk-2-1.png |only aire.zmvm-1.0.1/aire.zmvm/DESCRIPTION | 8 - aire.zmvm-1.0.1/aire.zmvm/MD5 | 22 ++-- aire.zmvm-1.0.1/aire.zmvm/NAMESPACE | 1 aire.zmvm-1.0.1/aire.zmvm/NEWS.md | 8 + aire.zmvm-1.0.1/aire.zmvm/R/download_archives.R | 52 ++++++++-- aire.zmvm-1.0.1/aire.zmvm/R/get_latest_imeca.R | 28 ++++- aire.zmvm-1.0.1/aire.zmvm/R/get_station_imeca.R | 4 aire.zmvm-1.0.1/aire.zmvm/man/figures/README-readme-contingencias-1.png |only aire.zmvm-1.0.1/aire.zmvm/man/figures/index-contingencias-1.png |only aire.zmvm-1.0.1/aire.zmvm/man/figures/pano-mxc.jpg |only aire.zmvm-1.0.1/aire.zmvm/man/get_latest_imeca.Rd | 5 aire.zmvm-1.0.1/aire.zmvm/tests/testthat/test_download_archives.R | 23 ---- aire.zmvm-1.0.1/aire.zmvm/tests/testthat/test_get_station_data.R | 23 +--- 14 files changed, 110 insertions(+), 64 deletions(-)
Title: Make Tidy Bins
Description: Multiple ways to bin numeric columns with a tidy output. Wraps a variety of existing binning methods into one function, and includes a new method for binning by equal value, which is useful for sales data. Provides a function to automatically summarize the properties of the binned columns.
Author: Harrison Tietze [aut, cre]
Maintainer: Harrison Tietze <Harrison4192@gmail.com>
This is a re-admission after prior archival of version 0.1.1 dated 2024-06-12
Diff between tidybins versions 0.1.1 dated 2024-06-12 and 0.1.2 dated 2026-03-05
DESCRIPTION | 8 ++-- MD5 | 12 +++--- NEWS.md | 2 + R/make_bins.R | 4 +- R/utilities.R | 5 ++ build/vignette.rds |binary inst/doc/tidybins.html | 94 +++++++++++++++++++++++-------------------------- 7 files changed, 65 insertions(+), 60 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: JJ Allaire [aut],
Romain Francois [aut, cph],
Kevin Ushey [aut, cre],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] ,
Hamada S. Badr [ctb] ,
Posit, PBC [cph],
Intel [aut, cph] ,
Microsoft [cph]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between RcppParallel versions 5.1.11 dated 2025-08-27 and 5.1.11-2 dated 2026-03-05
DESCRIPTION | 8 ++++---- MD5 | 14 +++++++------- NEWS.md | 4 ++++ inst/include/RcppParallel/TBB.h | 11 ++++++++++- src/tbb/build/macos.inc | 2 +- src/tbb/include/tbb/atomic.h | 7 +++++++ src/tbb/include/tbb/tbb_config.h | 2 +- src/tbb/src/tbb/arena.cpp | 6 ++++++ 8 files changed, 40 insertions(+), 14 deletions(-)
Title: Tests in Linear Mixed Effects Models
Description: Provides p-values in type I, II or III anova and summary tables
for lmer model fits (cf. lme4) via Satterthwaite's degrees of freedom method. A
Kenward-Roger method is also available via the pbkrtest package. Model selection
methods include step, drop1 and anova-like tables for random effects (ranova).
Methods for Least-Square means (LS-means) and tests of linear contrasts of fixed
effects are also available.
Author: Alexandra Kuznetsova [aut],
Per Bruun Brockhoff [aut, ths],
Rune Haubo Bojesen Christensen [aut, cre] ,
Sofie Poedenphant Jensen [ctb]
Maintainer: Rune Haubo Bojesen Christensen <Rune.Haubo@gmail.com>
Diff between lmerTest versions 3.2-0 dated 2026-01-13 and 3.2-1 dated 2026-03-05
lmerTest-3.2-0/lmerTest/R/zzz.R |only lmerTest-3.2-1/lmerTest/DESCRIPTION | 7 +++---- lmerTest-3.2-1/lmerTest/MD5 | 15 +++++++-------- lmerTest-3.2-1/lmerTest/NAMESPACE | 4 +--- lmerTest-3.2-1/lmerTest/NEWS.md | 11 ++++++++--- lmerTest-3.2-1/lmerTest/R/lmer.R | 27 ++++++++++++++++----------- lmerTest-3.2-1/lmerTest/R/lmer_anova.R | 2 +- lmerTest-3.2-1/lmerTest/R/lmer_summary.R | 2 +- lmerTest-3.2-1/lmerTest/tests/test_lmer.R | 9 ++++++++- 9 files changed, 45 insertions(+), 32 deletions(-)
Title: Download and Process Brazilian Education Data from INEP
Description: Download and process public education data from INEP (Instituto
Nacional de Estudos e Pesquisas Educacionais Anísio Teixeira). Provides
functions to access microdata from the School Census (Censo Escolar),
ENEM (Exame Nacional do Ensino Médio), IDEB (Índice de Desenvolvimento
da Educação Básica), and other educational datasets. Returns data in
tidy format ready for analysis. Data source: INEP Open Data Portal
<https://www.gov.br/inep/pt-br/acesso-a-informacao/dados-abertos>.
Author: Sidney da Silva Pereira Bissoli [aut, cre]
Maintainer: Sidney da Silva Pereira Bissoli <sbissoli76@gmail.com>
Diff between educabR versions 0.1.2 dated 2026-02-19 and 0.1.3 dated 2026-03-05
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 9 +++++++++ inst/doc/introducao-educabr.R | 15 ++++++++------- inst/doc/introducao-educabr.Rmd | 15 ++++++++------- inst/doc/introducao-educabr.html | 15 ++++++++------- vignettes/introducao-educabr.Rmd | 15 ++++++++------- 7 files changed, 50 insertions(+), 37 deletions(-)
Title: Statistical Downscaling of Climate Predictions
Description: Statistical downscaling and bias correction of climate predictions.
It includes implementations of commonly used methods such as Analogs,
Linear Regression, Logistic Regression, and Bias Correction techniques,
as well as interpolation functions for regridding and point-based applications.
It facilitates the production of high-resolution and local-scale climate
information from coarse-scale predictions, which is essential for impact analyses.
The package can be applied in a wide range of sectors and studies,
including agriculture, water management, energy, heatwaves, and other
climate-sensitive applications. The package was developed within the framework of
the European Union Horizon Europe projects Impetus4Change (101081555) and ASPECT (101081460),
the Wellcome Trust supported HARMONIZE project (224694/Z/21/Z), and the Spanish national project
BOREAS (PID2022-140673OA-I00). Implements the methods described in
Duzenli et al. (2024) <doi:10.5194/egusphere-egu24-19420>.
Author: BSC-CNS [aut, cph],
Jaume Ramon [aut] ,
Eren Duzenli [aut] ,
Llorenc Lledo [aut] ,
Lluis Palma [ctb],
Sara Moreno-Montes [ctb],
Carlos Delgado [ctb],
Nuria Perez-Zanon [ctb] ,
Javier Corvillo Guerra [ctb],
Raul Marcos [ctb],
Alba Llabres-Brustenga [c [...truncated...]
Maintainer: Victoria Agudetse <victoria.agudetse@bsc.es>
Diff between CSDownscale versions 0.0.1 dated 2025-12-17 and 0.0.2 dated 2026-03-05
DESCRIPTION | 14 ++++++++------ MD5 | 16 ++++++++-------- NAMESPACE | 1 + NEWS.md | 4 ++++ R/Analogs.R | 5 +++++ R/Intbc.R | 3 +++ R/Interpolation.R | 31 ++++++++++++++++++------------- R/Intlr.R | 1 + R/LogisticReg.R | 2 ++ 9 files changed, 50 insertions(+), 27 deletions(-)
Title: Processing and Analysing Animal Trajectories
Description: Tools to handle, manipulate and explore trajectory data, with an emphasis on data from tracked animals. The package is designed to support large studies with several million location records and keep track of units where possible. Data import directly from 'movebank' <https://www.movebank.org/cms/movebank-main> and files is facilitated.
Author: Bart Kranstauber [aut, cre] ,
Kamran Safi [aut] ,
Anne K. Scharf [aut]
Maintainer: Bart Kranstauber <b.kranstauber@uva.nl>
Diff between move2 versions 0.4.5 dated 2025-11-07 and 0.5.0 dated 2026-03-05
move2-0.4.5/move2/tests/testthat/test-segments.R |only move2-0.5.0/move2/DESCRIPTION | 8 move2-0.5.0/move2/MD5 | 82 +-- move2-0.5.0/move2/NAMESPACE | 3 move2-0.5.0/move2/NEWS.md | 11 move2-0.5.0/move2/R/aaa.R | 23 move2-0.5.0/move2/R/movebank_api.R | 339 +++++++++---- move2-0.5.0/move2/R/movebank_api_helper.R | 97 +++ move2-0.5.0/move2/R/movebank_constants.R | 2 move2-0.5.0/move2/R/mt_interpolate.R | 284 +++++++++-- move2-0.5.0/move2/R/mt_segments.R | 11 move2-0.5.0/move2/R/mt_time.R | 4 move2-0.5.0/move2/R/sf.R | 3 move2-0.5.0/move2/R/tidy.R | 46 + move2-0.5.0/move2/R/tidy_track.R | 6 move2-0.5.0/move2/inst/doc/albatross.R | 8 move2-0.5.0/move2/inst/doc/albatross.Rmd | 10 move2-0.5.0/move2/inst/doc/albatross.html | 26 - move2-0.5.0/move2/inst/doc/filtering_tracks.html | 67 +- move2-0.5.0/move2/inst/doc/movebank.html | 71 +- move2-0.5.0/move2/inst/doc/programming_move2_object.R | 18 move2-0.5.0/move2/inst/doc/programming_move2_object.Rmd | 36 + move2-0.5.0/move2/inst/doc/programming_move2_object.html | 46 + move2-0.5.0/move2/inst/doc/trajectory_analysis.R | 40 + move2-0.5.0/move2/inst/doc/trajectory_analysis.Rmd | 48 + move2-0.5.0/move2/inst/doc/trajectory_analysis.html | 74 ++- move2-0.5.0/move2/man/mt_aeqd_crs.Rd | 2 move2-0.5.0/move2/man/mt_azimuth.Rd | 2 move2-0.5.0/move2/man/mt_distance.Rd | 2 move2-0.5.0/move2/man/mt_filter_movebank_visible.Rd | 2 move2-0.5.0/move2/man/mt_filter_unique.Rd | 4 move2-0.5.0/move2/man/mt_interpolate.Rd | 26 - move2-0.5.0/move2/man/mt_read.Rd | 2 move2-0.5.0/move2/man/mt_stack.Rd | 2 move2-0.5.0/move2/man/mt_time.Rd | 4 move2-0.5.0/move2/tests/testthat/test-movebank_api.R | 368 +++++++++++---- move2-0.5.0/move2/tests/testthat/test-mt_interpolate.R | 106 ++++ move2-0.5.0/move2/tests/testthat/test-mt_segments.R |only move2-0.5.0/move2/tests/testthat/test-mt_stack.R | 266 ++++++++-- move2-0.5.0/move2/tests/testthat/test-tidyr.R | 73 ++ move2-0.5.0/move2/vignettes/albatross.Rmd | 10 move2-0.5.0/move2/vignettes/programming_move2_object.Rmd | 36 + move2-0.5.0/move2/vignettes/trajectory_analysis.Rmd | 48 + 43 files changed, 1790 insertions(+), 526 deletions(-)
More information about RSQLite.toolkit at CRAN
Permanent link
Title: Support for Compiling Examination Tasks using the 'exams'
Package
Description: The main aim is to further facilitate the creation of exercises based on the package 'exams'
by Grün, B., and Zeileis, A. (2009) <doi:10.18637/jss.v029.i10>. Creating effective student exercises
involves challenges such as creating appropriate data sets and ensuring access to intermediate values
for accurate explanation of solutions. The functionality includes the generation of univariate and
bivariate data including simple time series, functions for theoretical distributions and their approximation,
statistical and mathematical calculations for tasks in basic statistics courses as well as general tasks
such as string manipulation, LaTeX/HTML formatting and the editing of XML task files for 'Moodle'.
Author: Sigbert Klinke [aut, cre] ,
Kleio Chrysopoulou Tseva [ctb]
Maintainer: Sigbert Klinke <sigbert@hu-berlin.de>
Diff between exams.forge versions 1.0.12 dated 2025-09-10 and 1.0.13 dated 2026-03-05
DESCRIPTION | 12 - MD5 | 52 ++++---- NAMESPACE | 6 R/assoc.R | 1 R/assoc_data.R | 2 R/cleanFile.R | 23 +-- R/combinatorics.R | 289 +++++++++++++++++++++++----------------------- R/distribution.R | 3 R/dunif.R |only R/exams2call.R | 39 ++++-- R/proptests.R | 2 R/sos.R | 97 ++++++++------- R/toHTML.R | 4 R/ttests.R | 2 R/zzz.R | 2 data/distributions.rda |binary inst/doc/exams.forge.R | 2 inst/doc/exams.forge.Rmd | 2 inst/doc/exams.forge.html | 36 ++--- man/DiscreteUniform.Rd |only man/assoc.Rd | 3 man/assoc_data.Rd | 2 man/cleanFile.Rd | 16 +- man/exams2call.Rd | 2 man/proptests.Rd | 2 man/sos.Rd | 13 +- man/ttests.Rd | 2 vignettes/exams.forge.Rmd | 2 28 files changed, 327 insertions(+), 289 deletions(-)
Title: Israel Baby Names 1949-2024
Description: Israeli baby names provided by Israel's Central Bureau of Statistics
(CBS/LAMAS). Contains names used for at least 5 children in a given year,
covering sectors "Jewish", "Muslim", "Christian-Arab", and "Druze" from
1949-2024. Legacy 1948 data and archived "Other" sector data are provided
as separate datasets. Primary data source: CBS Release 391/2025
<https://www.cbs.gov.il/he/mediarelease/DocLib/2025/391/11_25_391t1.xlsx>.
Author: Aviezer Lifshitz [aut, cre]
Maintainer: Aviezer Lifshitz <aviezer.lifshitz@weizmann.ac.il>
Diff between babynamesIL versions 0.0.2 dated 2024-01-08 and 0.2.1 dated 2026-03-05
DESCRIPTION | 25 +++-- MD5 | 25 +++-- NEWS.md | 42 +++++++++ R/data.R | 153 +++++++++++++++++++++++++++++++--- README.md | 51 ++++++----- data/babynamesIL.rda |binary data/babynamesIL_1948.rda |only data/babynamesIL_other.rda |only data/babynamesIL_totals.rda |binary man/babynamesIL.Rd | 77 +++++++++++++++-- man/babynamesIL_1948.Rd |only man/babynamesIL_other.Rd |only man/babynamesIL_totals.Rd | 26 +++++ man/figures/README-example-traj-1.png |binary tests/testthat/_snaps |only tests/testthat/test-data.R | 106 ++++++++++++++++++++++- 16 files changed, 436 insertions(+), 69 deletions(-)
Title: Calculates Safety Stopping Boundaries for a Single-Arm Trial
using Bayes
Description: Computation of stopping boundaries for a single-arm trial using a
Bayesian criterion. For each m<=n (n=total patient number of the
trial) the smallest number of observed toxicities is calculated leading
to the termination of the trial/accrual according to the specified criteria.
The probabilities of stopping the trial/accrual at and up until (resp.) the
m-th patient (m<=n) is also calculated. This design is more conservative than
the frequentist approach (using Clopper Pearson CIs) which might be preferred
as it concerns safety. See also Aamot et al. (2010) "Continuous monitoring of
toxicity in clinical Trials - simulating the risk of stopping prematurely"
<doi:10.5414/cpp48476>.
Author: NCT Trial Center, Heidelberg [aut],
Lisa-Marie Lanz [cre]
Maintainer: Lisa-Marie Lanz <studienzentrale@nct-heidelberg.de>
Diff between ToxCrit versions 1.0 dated 2021-10-01 and 1.1 dated 2026-03-05
ToxCrit-1.0/ToxCrit/README.md |only ToxCrit-1.1/ToxCrit/DESCRIPTION | 39 +++++------ ToxCrit-1.1/ToxCrit/MD5 | 9 +- ToxCrit-1.1/ToxCrit/NEWS.md | 5 - ToxCrit-1.1/ToxCrit/R/ToxCrit.R | 7 +- ToxCrit-1.1/ToxCrit/man/ToxCrit.Rd | 123 ++++++++++++++++++++----------------- 6 files changed, 97 insertions(+), 86 deletions(-)
Title: Explainable Outlier Detection Through Decision Tree Conditioning
Description: Outlier detection method that flags suspicious values within observations,
constrasting them against the normal values in a user-readable format, potentially
describing conditions within the data that make a given outlier more rare.
Full procedure is described in Cortes (2020) <doi:10.48550/arXiv.2001.00636>.
Loosely based on the 'GritBot' <https://www.rulequest.com/gritbot-info.html> software.
Author: David Cortes [aut, cre]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between outliertree versions 1.10.0 dated 2024-09-06 and 1.10.0-1 dated 2026-03-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/Introducing_OutlierTree.html | 4 ++-- src/Rwrapper.cpp | 6 +++--- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Solve Systems of Nonlinear Equations
Description: Solve a system of nonlinear equations using a Broyden or a Newton method
with a choice of global strategies such as line search and trust region.
There are options for using a numerical or user supplied Jacobian,
for specifying a banded numerical Jacobian and for allowing
a singular or ill-conditioned Jacobian.
Author: Berend Hasselman [aut] ,
Rob Carnell [aut, cre]
Maintainer: Rob Carnell <bertcarnell@gmail.com>
Diff between nleqslv versions 3.3.5 dated 2023-11-26 and 3.3.6 dated 2026-03-05
DESCRIPTION | 27 +- MD5 | 6 NEWS | 634 +++++++++++++++++++++++++++--------------------------- build/partial.rdb |binary 4 files changed, 343 insertions(+), 324 deletions(-)
Title: Analysis and Mining of Multilayer Social Networks
Description: Functions for the creation/generation and analysis of multilayer social networks <doi:10.18637/jss.v098.i08>.
Author: Matteo Magnani [aut, cre],
Luca Rossi [aut] ,
Davide Vega [aut] ,
Obaida Hanteer [ctb]
Maintainer: Matteo Magnani <matteo.magnani@it.uu.se>
This is a re-admission after prior archival of version 4.3.2 dated 2025-10-24
Diff between multinet versions 4.3.2 dated 2025-10-24 and 4.3.4 dated 2026-03-05
multinet-4.3.2/multinet/src/infomap |only multinet-4.3.2/multinet/src/src/community/_impl/infomap_utils.hpp |only multinet-4.3.2/multinet/src/src/community/infomap.hpp |only multinet-4.3.2/multinet/src/src/community/infomap.ipp |only multinet-4.3.4/multinet/DESCRIPTION | 28 +-- multinet-4.3.4/multinet/MD5 | 72 ---------- multinet-4.3.4/multinet/NEWS | 4 multinet-4.3.4/multinet/src/Makevars | 8 - multinet-4.3.4/multinet/src/Makevars.win | 8 - multinet-4.3.4/multinet/src/r_functions.cpp | 18 -- multinet-4.3.4/multinet/src/src/core/attributes/conversion.cpp | 27 ++- 11 files changed, 52 insertions(+), 113 deletions(-)
Title: 'ICESat-2' Altimeter Data using R
Description: Programmatic connection to the 'OpenAltimetry' API <https://openaltimetry.earthdatacloud.nasa.gov/data/openapi/swagger-ui/index.html/> to download and process 'ATL03' (Global 'Geolocated' Photon Data), 'ATL06' (Land Ice Height), 'ATL07' (Sea Ice Height), 'ATL08' (Land and Vegetation Height), 'ATL10' (Sea Ice 'Freeboard'), 'ATL12' (Ocean Surface Height) and 'ATL13' (Inland Water Surface Height) 'ICESat-2' Altimeter Data. The user has the option to download the data by selecting a bounding box from a 1- or 5-degree grid globally utilizing a shiny application. The 'ICESat-2' mission collects 'altimetry' data of the Earth's surface. The sole instrument on 'ICESat-2' is the Advanced Topographic Laser Altimeter System (ATLAS) instrument that measures ice sheet elevation change and sea ice thickness, while also generating an estimate of global vegetation biomass. 'ICESat-2' continues the important observations of ice-sheet elevation change, sea-ice 'freeboard', and vegetation canopy hei [...truncated...]
Author: Lampros Mouselimis [aut, cre] ,
OpenAltimetry.org [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between IceSat2R versions 1.0.8 dated 2026-02-20 and 1.0.9 dated 2026-03-05
DESCRIPTION | 8 MD5 | 24 - NEWS.md | 5 README.md | 4 inst/doc/IceSat-2_Atlas_products_PDF.R | 341 +++++++++---------- inst/doc/IceSat-2_Atlas_products_PDF.Rmd | 341 +++++++++---------- inst/doc/IceSat-2_Atlas_products_PDF.pdf |binary inst/doc/IceSat-2_Mission_Orbits_PDF.R | 338 +++++++++--------- inst/doc/IceSat-2_Mission_Orbits_PDF.Rmd | 304 ++++++++-------- inst/doc/IceSat-2_Mission_Orbits_PDF.pdf |binary inst/doc/IceSat-2_Virtual_File_System_Orbits_PDF.pdf |binary vignettes/IceSat-2_Atlas_products_PDF.Rmd | 341 +++++++++---------- vignettes/IceSat-2_Mission_Orbits_PDF.Rmd | 304 ++++++++-------- 13 files changed, 979 insertions(+), 1031 deletions(-)
Title: Relational Data Models
Description: Provides tools for working with multiple related
tables, stored as data frames or in a relational database. Multiple
tables (data and metadata) are stored in a compound object, which can
then be manipulated with a pipe-friendly syntax.
Author: Tobias Schieferdecker [aut],
Kirill Mueller [aut, cre] ,
Antoine Fabri [ctb],
Darko Bergant [aut],
Katharina Brunner [ctb],
James Wondrasek [ctb],
Indrajeet Patil [ctb] ,
Maelle Salmon [ctb] ,
energie360 AG [fnd],
cynkra GmbH [fnd, cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between dm versions 1.1.0 dated 2026-02-25 and 1.1.1 dated 2026-03-05
DESCRIPTION | 8 +- MD5 | 34 ++++----- NEWS.md | 9 ++ R/dm.R | 1 R/igraph-fallback.R | 140 +++++++++++++++++++++++++++----------- inst/doc/dm.html | 4 - inst/doc/howto-dm-copy.html | 4 - inst/doc/howto-dm-db.html | 4 - inst/doc/howto-dm-df.html | 4 - inst/doc/howto-dm-rows.html | 4 - inst/doc/howto-dm-theory.html | 4 - inst/doc/tech-dm-cdm.html | 4 - inst/doc/tech-dm-class.html | 4 - inst/doc/tech-dm-draw.html | 4 - inst/doc/tech-dm-filter.html | 4 - inst/doc/tech-dm-join.html | 4 - inst/doc/tech-dm-low-level.html | 4 - tests/testthat/_snaps/duckplyr.md | 1 18 files changed, 157 insertions(+), 84 deletions(-)
Title: Data Access and Analytical Tools for 'VectorSurv' Users
Description: Allows registered 'VectorSurv' <https://vectorsurv.org/> users access to data through the 'VectorSurv API' <https://api.vectorsurv.org/>. Additionally provides functions for analysis and visualization.
Author: Christina De Cesaris [aut],
Lincoln Wells [aut],
VectorSurv Staff [aut, cre]
Maintainer: VectorSurv Staff <help@vectorsurv.org>
Diff between vectorsurvR versions 1.6.2 dated 2026-01-14 and 1.6.3 dated 2026-03-05
DESCRIPTION | 20 +++-- MD5 | 39 ++++++----- NAMESPACE | 27 +++++++ R/getAgency.R |only R/getRegions.R | 2 R/getSpatialFeatures.R | 1 R/getSpeciesTable.R | 85 ++++++++++++------------ R/getToken.R | 3 R/globals.R | 10 ++ R/plotInvasiveSums.R | 4 - R/plotPoolsMap.R |only R/plotSpeciesMap.R |only R/plotVectorAbundance.R | 2 R/utils-map.R |only inst/doc/vectorsurvR.Rmd | 2 inst/doc/vectorsurvR.html | 7 + man/getAgency.Rd |only man/getRegions.Rd | 34 ++++----- man/getSpeciesTable.Rd | 112 +++++++++++++++---------------- man/plotInvasiveSums.Rd | 61 +++++++++-------- man/plotPoolsMap.Rd |only man/plotSpeciesMap.Rd |only man/plotVectorAbundance.Rd | 158 ++++++++++++++++++++++----------------------- vignettes/vectorsurvR.Rmd | 2 24 files changed, 313 insertions(+), 256 deletions(-)
Title: A Curated Collection of Pulmonary and Respiratory Disease
Datasets
Description: Provides a comprehensive and curated collection of datasets related to the lungs, respiratory system, and associated diseases.
This package includes epidemiological, clinical, experimental, and simulated datasets on conditions such as lung cancer, asthma,
Chronic Obstructive Pulmonary Disease (COPD), tuberculosis, whooping cough, pneumonia, influenza, and other respiratory illnesses.
It is designed to support data exploration, statistical modeling, teaching, and research in pulmonary medicine, public health,
environmental epidemiology, and respiratory disease surveillance.
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between PulmoDataSets versions 0.2.0 dated 2025-09-07 and 0.2.1 dated 2026-03-05
DESCRIPTION | 6 - MD5 | 100 ++++++++++---------- NEWS.md | 9 + R/data-documentation.R | 8 - R/pulmodatasets-package.R | 2 R/view_datasets_PulmoDataSets.R | 2 README.md | 5 + build/vignette.rds |binary inst/CITATION | 5 - inst/doc/introduction_to_pulmodatasets.html | 11 +- inst/licenses/LICENSE | 4 man/children_respiratory_rates_df.Rd | 2 man/engwales_cancer_mortality_df.Rd | 2 man/neonatal_intubation_times_df.Rd | 2 tests/testthat/test-UK_female_lung_deaths_ts.R | 2 tests/testthat/test-UK_male_lung_deaths_ts.R | 2 tests/testthat/test-USMortality_df.R | 2 tests/testthat/test-USRegionalMortality_df.R | 2 tests/testthat/test-ai_ipn_performance_dt.R | 2 tests/testthat/test-air_polution_mortality_df.R | 2 tests/testthat/test-asthma_patients_tbl_df.R | 2 tests/testthat/test-bronchitis_Cardiff_df.R | 2 tests/testthat/test-chicago_pollution_df.R | 2 tests/testthat/test-child_wheeze_pollution_df.R | 2 tests/testthat/test-children_respiratory_rates_df.R | 2 tests/testthat/test-danish_lung_incidence_df.R | 2 tests/testthat/test-engwales_cancer_mortality_df.R | 2 tests/testthat/test-influenza_us_1975_df.R | 2 tests/testthat/test-lung_cancer_survival_df.R | 2 tests/testthat/test-lung_nodules_detection_dt.R | 2 tests/testthat/test-lungca_cancer_deaths_df.R | 2 tests/testthat/test-neonatal_intubation_times_df.R | 2 tests/testthat/test-nicotine_gum_df.R | 2 tests/testthat/test-ohio_children_wheeze_df.R | 2 tests/testthat/test-patients_lung_diseases_tbl_df.R | 2 tests/testthat/test-pneumonia_influenza_ts.R | 2 tests/testthat/test-respiratory_clinical_trial_df.R | 2 tests/testthat/test-respiratory_infections_df.R | 2 tests/testthat/test-respiratory_trial_df.R | 2 tests/testthat/test-respiratory_trial_outcomes_df.R | 2 tests/testthat/test-smoking_UK_tbl_df.R | 2 tests/testthat/test-smoking_doctors_df.R | 2 tests/testthat/test-smoking_lung_cancer_df.R | 2 tests/testthat/test-smoking_youth_tbl_df.R | 2 tests/testthat/test-tlc_lung_capacity_df.R | 2 tests/testthat/test-tuberculosis_vaccine_df.R | 2 tests/testthat/test-veterans_lung_cancer_df.R | 2 tests/testthat/test-view_datasets_PulmoDataSets.R | 2 tests/testthat/test-whooping_cough_dk_df.R | 2 tests/testthat/test-whooping_cough_phila_df.R | 2 tests/testthat/test-whooping_cough_ts.R | 2 51 files changed, 124 insertions(+), 108 deletions(-)
Title: Utilities for Scheduling Functions to Execute Later with Event
Loops
Description: Executes arbitrary R or C functions some time after the
current time, after the R execution stack has emptied. The functions
are scheduled in an event loop.
Author: Winston Chang [aut] ,
Joe Cheng [aut],
Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Marcus Geelnard [ctb, cph] ,
Evan Nemerson [ctb, cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between later versions 1.4.7 dated 2026-02-24 and 1.4.8 dated 2026-03-05
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ inst/doc/later-cpp.html | 4 ++-- inst/include/later_api.h | 2 +- src/badthreads.h | 2 -- src/later.cpp | 2 +- src/later_win32.cpp | 2 +- src/tinycthread.h | 4 ++-- 9 files changed, 22 insertions(+), 20 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cph],
Julia Piaskowski [cre, aut],
Balazs Banfai [ctb],
Ben Bolker [ctb],
Paul Buerkner [ctb],
Iago Gine-Vazquez [ctb],
Maxime Herve [ctb],
Maarten Jung [ctb],
Jonathon Love [ctb],
Fernando Miguez [ctb],
Hannes Riebl [ctb],
Hen [...truncated...]
Maintainer: Julia Piaskowski <julia.piask@gmail.com>
Diff between emmeans versions 2.0.1 dated 2025-12-16 and 2.0.2 dated 2026-03-05
DESCRIPTION | 12 MD5 | 350 +-- NAMESPACE | 535 ++--- NEWS.md | 2772 ++++++++++++++--------------- R/0nly-internal.R | 1148 ++++++------ R/MCMC-support.R | 1426 +++++++-------- R/S4-classes.R | 252 +- R/aovlist-support.R | 412 ++-- R/betareg.support.R | 262 +- R/brms-support.R | 64 R/cld-emm.R | 516 ++--- R/contrast.R | 1262 ++++++------- R/countreg-support.R | 638 +++--- R/datasets.R | 690 +++---- R/eff-size.R | 322 +-- R/emm-contr.R | 1142 ++++++------ R/emm-example.R | 152 - R/emm-list.R | 764 ++++---- R/emmGrid-methods.R | 2208 +++++++++++------------ R/emmeans-package.R | 246 +- R/emmeans.R | 1652 ++++++++--------- R/emmip.R | 1162 ++++++------ R/emtrends.R | 540 ++--- R/factors.R | 764 ++++---- R/gam-support.R | 560 ++--- R/glht-support.R | 488 ++--- R/helpers.R | 1790 +++++++++---------- R/interfacing.R | 920 ++++----- R/lqm-support.R | 244 +- R/models.R | 62 R/multinom-support.R | 268 +- R/multiple-models.R | 372 +-- R/multiv.R | 480 ++--- R/nested.R | 854 ++++----- R/nonlin-support.R | 288 +-- R/ordinal-support.R | 828 ++++---- R/plot.emm.R | 1222 ++++++------- R/pwpp.R | 1106 +++++------ R/qdrg.R | 602 +++--- R/rbind.R | 386 ++-- R/ref-grid.R | 2562 +++++++++++++-------------- R/rms-support.R | 238 +- R/sommer-support.R | 132 - R/summary.R | 2992 ++++++++++++++++---------------- R/test.R | 1090 +++++------ R/transformations.R | 958 +++++----- R/wrappers.R | 256 +- R/xtable-method.R | 258 +- R/zzz.R | 332 +-- README.md | 246 +- build/vignette.rds |binary inst/css/clean-simple.css | 78 inst/doc/AQuickStart.R | 8 inst/doc/AQuickStart.Rmd | 430 ++-- inst/doc/AQuickStart.html | 668 +++---- inst/doc/FAQs.R | 28 inst/doc/FAQs.Rmd | 960 +++++----- inst/doc/FAQs.html | 1232 ++++++------- inst/doc/basics.R | 302 +-- inst/doc/basics.Rmd | 1454 +++++++-------- inst/doc/basics.html | 1992 ++++++++++----------- inst/doc/comparisons.R | 188 +- inst/doc/comparisons.Rmd | 736 +++---- inst/doc/comparisons.html | 1138 +++++------- inst/doc/confidence-intervals.R | 138 - inst/doc/confidence-intervals.Rmd | 616 +++--- inst/doc/confidence-intervals.html | 1124 +++++------- inst/doc/interactions.R | 172 - inst/doc/interactions.Rmd | 734 +++---- inst/doc/interactions.html | 1258 ++++++------- inst/doc/messy-data.R | 265 +- inst/doc/messy-data.Rmd | 1099 +++++------ inst/doc/messy-data.html | 1624 ++++++++--------- inst/doc/models.Rmd | 1112 +++++------ inst/doc/models.html | 2212 +++++++++++------------ inst/doc/predictions.R | 78 inst/doc/predictions.Rmd | 326 +-- inst/doc/predictions.html | 541 ++--- inst/doc/re-engineering-clds.R | 54 inst/doc/re-engineering-clds.html | 734 +++---- inst/doc/re-engineering-clds.rmd | 472 ++--- inst/doc/sophisticated.R | 318 +-- inst/doc/sophisticated.Rmd | 954 +++++----- inst/doc/sophisticated.html | 1586 ++++++++-------- inst/doc/transformations.R | 402 ++-- inst/doc/transformations.Rmd | 1418 +++++++-------- inst/doc/transformations.html | 2052 ++++++++++----------- inst/doc/utilities.R | 180 - inst/doc/utilities.Rmd | 592 +++--- inst/doc/utilities.html | 1040 +++++------ inst/doc/vignette-topics.Rmd | 1610 ++++++++--------- inst/doc/vignette-topics.html | 2418 ++++++++++++------------- inst/doc/xplanations.R | 190 +- inst/doc/xplanations.Rmd | 784 ++++---- inst/doc/xplanations.html | 1174 ++++++------ inst/doc/xtending.R | 288 +-- inst/doc/xtending.Rmd | 1084 +++++------ inst/doc/xtending.html | 1838 +++++++++---------- inst/extexamples/as.mcmc-coda.R | 16 inst/extexamples/cld-multcomp.R | 14 inst/extexamples/glht-multcomp.R | 24 inst/extexamples/hpd.summary-coda.R | 18 inst/extexamples/mvregrid.R | 24 inst/extexamples/qdrg-biglm.R | 20 inst/extexamples/qdrg-coda.R | 14 inst/extexamples/qdrg-ordinal.R | 12 inst/extexamples/xtable.R | 6 man/CLD.emmGrid.Rd | 214 +- man/MOats.Rd | 94 - man/as.emmGrid.Rd | 132 - man/auto.noise.Rd | 124 - man/contrast.Rd | 466 ++-- man/eff_size.Rd | 248 +- man/emmGrid-class.Rd | 196 +- man/emmGrid-methods.Rd | 108 - man/emm_example.Rd | 66 man/emm_list-object.Rd | 208 +- man/emm_options.Rd | 450 ++-- man/emmc-functions.Rd | 462 ++-- man/emmeans-package.Rd | 200 +- man/emmeans.Rd | 508 ++--- man/emmip.Rd | 495 ++--- man/emmobj.Rd | 214 +- man/emtrends.Rd | 278 +- man/extending-emmeans.Rd | 712 +++---- man/feedlot.Rd | 102 - man/fiber.Rd | 82 man/glht-support.Rd | 152 - man/hpd.summary.Rd | 190 +- man/joint_tests.Rd | 392 ++-- man/make.tran.Rd | 392 ++-- man/manip-factors.Rd | 386 ++-- man/mcmc-support.Rd | 208 +- man/models.Rd | 18 man/mvcontrast.Rd | 162 - man/mvregrid.Rd | 102 - man/neuralgia.Rd | 86 man/nutrition.Rd | 102 - man/oranges.Rd | 94 - man/pigs.Rd | 68 man/plot.Rd | 332 +-- man/pwpm.Rd | 148 - man/pwpp.Rd | 242 +- man/qdrg.Rd | 272 +- man/rbind.emmGrid.Rd | 238 +- man/ref_grid.Rd | 932 ++++----- man/regrid.Rd | 260 +- man/summary.emmGrid.Rd | 994 +++++----- man/ubds.Rd | 80 man/untidy.Rd | 62 man/update.emmGrid.Rd | 562 +++--- man/wrappers.Rd | 126 - man/xtable.emmGrid.Rd | 128 - tests/testthat.R | 8 tests/testthat/test-contrast.R | 70 tests/testthat/test-emmeans.R | 62 tests/testthat/test-emtrends.R | 42 tests/testthat/test-nested.R | 74 tests/testthat/test-ref_grid.R | 188 +- tests/testthat/test-utility_functions.R | 44 vignettes/AQuickStart.Rmd | 430 ++-- vignettes/FAQs.Rmd | 960 +++++----- vignettes/basics.Rmd | 1454 +++++++-------- vignettes/comparisons.Rmd | 736 +++---- vignettes/confidence-intervals.Rmd | 616 +++--- vignettes/interactions.Rmd | 734 +++---- vignettes/messy-data.Rmd | 1099 +++++------ vignettes/models.Rmd | 1112 +++++------ vignettes/predictions.Rmd | 326 +-- vignettes/re-engineering-clds.rmd | 472 ++--- vignettes/sophisticated.Rmd | 954 +++++----- vignettes/transformations.Rmd | 1418 +++++++-------- vignettes/utilities.Rmd | 592 +++--- vignettes/vignette-topics.Rmd | 1610 ++++++++--------- vignettes/xplanations.Rmd | 784 ++++---- vignettes/xtending.Rmd | 1084 +++++------ 176 files changed, 52669 insertions(+), 52961 deletions(-)
Title: Text Cleaning Tools
Description: Tools to clean and process text. Tools are geared at checking for substrings that
are not optimal for analysis and replacing or removing them (normalizing) with more
analysis friendly substrings (see Sproat, Black, Chen, Kumar, Ostendorf, & Richards
(2001) <doi:10.1006/csla.2001.0169>) or extracting them into new variables. For
example, emoticons are often used in text but not always easily handled by analysis
algorithms. The replace_emoticon() function replaces emoticons with word
equivalents.
Author: Tyler Rinker [aut, cre],
ctwheels StackOverflow [ctb],
Surin Space [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between textclean versions 0.9.3 dated 2018-07-23 and 0.9.7 dated 2026-03-05
textclean-0.9.3/textclean/NEWS |only textclean-0.9.3/textclean/R/filter_element.R |only textclean-0.9.3/textclean/R/filter_row.R |only textclean-0.9.3/textclean/man/filter_element.Rd |only textclean-0.9.3/textclean/man/filter_row.Rd |only textclean-0.9.3/textclean/man/textclean.Rd |only textclean-0.9.7/textclean/DESCRIPTION | 43 textclean-0.9.7/textclean/MD5 | 212 textclean-0.9.7/textclean/NAMESPACE | 154 textclean-0.9.7/textclean/NEWS.md |only textclean-0.9.7/textclean/R/add_comma_space.R | 38 textclean-0.9.7/textclean/R/add_missing_endmark.R | 60 textclean-0.9.7/textclean/R/check_text.R | 581 - textclean-0.9.7/textclean/R/check_text_logicals.R | 947 +-- textclean-0.9.7/textclean/R/drop_element.R | 164 textclean-0.9.7/textclean/R/drop_row.R | 206 textclean-0.9.7/textclean/R/fgsub.R | 372 - textclean-0.9.7/textclean/R/fix_mdyyyy.R |only textclean-0.9.7/textclean/R/glue-reexports.R | 14 textclean-0.9.7/textclean/R/has_endmark.R | 68 textclean-0.9.7/textclean/R/like.R |only textclean-0.9.7/textclean/R/make_plural.R | 66 textclean-0.9.7/textclean/R/match_tokens.R | 60 textclean-0.9.7/textclean/R/mgsub.R | 366 - 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Title: Species Sensitivity Distributions
Description: Species sensitivity distributions are cumulative probability
distributions which are fitted to toxicity concentrations for
different species as described by Posthuma et al.(2001)
<isbn:9781566705783>. The ssdtools package uses Maximum Likelihood to
fit distributions such as the gamma, log-logistic, log-normal and
log-normal log-normal mixture. Multiple distributions can be averaged
using Akaike Information Criteria. Confidence intervals on hazard
concentrations and proportions are produced by bootstrapping.
Author: Joe Thorley [aut, cre] ,
Rebecca Fisher [aut],
David Fox [aut],
Carl Schwarz [aut],
Angeline Tillmanns [ctb],
Seb Dalgarno [ctb] ,
Kathleen McTavish [ctb],
Heather Thompson [ctb],
Doug Spry [ctb],
Rick van Dam [ctb],
Graham Batley [ctb],
Ali Azizishi [...truncated...]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between ssdtools versions 2.5.0 dated 2025-12-01 and 2.6.0 dated 2026-03-05
DESCRIPTION | 6 - MD5 | 57 ++++++------- NEWS.md | 9 +- R/bcanz.R | 25 ++--- R/hc-burrlioz.R | 2 R/hc.R | 7 + R/hp.R | 4 R/plot-cdf.R | 17 ++- R/predict.R | 4 inst/doc/faqs.html | 4 inst/doc/ssdtools.Rmd | 2 inst/doc/ssdtools.html | 10 +- man/predict.fitburrlioz.Rd | 2 man/predict.fitdists.Rd | 2 man/ssd_fit_bcanz.Rd | 13 ++ man/ssd_hc.Rd | 4 man/ssd_hc_bcanz.Rd | 16 +++ man/ssd_hc_burrlioz.Rd | 2 man/ssd_hp.Rd | 4 man/ssd_hp_bcanz.Rd | 8 + man/ssd_plot_cdf.Rd | 9 +- src/TMB/ssdtools_TMBExports.cpp | 3 tests/testthat/_snaps/bcanz/hc_chloride.csv | 8 - tests/testthat/_snaps/bcanz/hp_chloride.csv | 2 tests/testthat/_snaps/bcanz/hp_chloride_proportion.csv | 2 tests/testthat/_snaps/plot-cdf/fits_average_est_method.png |only tests/testthat/helper.R | 2 tests/testthat/test-bcanz.R | 6 - tests/testthat/test-plot-cdf.R | 1 vignettes/ssdtools.Rmd | 2 30 files changed, 144 insertions(+), 89 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre] ,
Hadley Wickham [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 1.1.7 dated 2026-01-27 and 1.1.8 dated 2026-03-05
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 5 +++++ inst/ext/renv.c | 28 +++++++++++++++++++++------- 4 files changed, 33 insertions(+), 14 deletions(-)
Title: Less Code with More Comprehensive Results
Description: Each function replaces multiple standard R functions. For example,
two function calls, Read() and CountAll(), generate summary statistics for
all variables in the data frame, plus histograms and bar charts. Other
functions provide data aggregation via pivot tables; comprehensive
regression, ANOVA, and t-test; visualizations including integrated
Violin/Box/Scatter plot for a numerical variable, bar chart, histogram,
box plot, density curves, calibrated power curve; reading multiple data
formats with the same call; variable labels; time series with aggregation
and forecasting; color themes; and Trellis (facet) graphics. Also includes
a confirmatory factor analysis of multiple-indicator measurement models,
pedagogical routines for data simulation (e.g., Central Limit Theorem),
generation and rendering of regression instructions for interpretative output,
and both interactive construction of visualizations and interactive
visualizations with plotly.
Author: David W. Gerbing [aut, cre]
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.5.1 dated 2026-01-22 and 4.5.2 dated 2026-03-05
lessR-4.5.1/lessR/R/plt.time_truncate_groups.R |only lessR-4.5.1/lessR/inst/img/bc2Explain.png |only lessR-4.5.2/lessR/DESCRIPTION | 6 lessR-4.5.2/lessR/MD5 | 76 ++--- lessR-4.5.2/lessR/NAMESPACE | 2 lessR-4.5.2/lessR/NEWS.md | 34 ++ lessR-4.5.2/lessR/R/Chart.R | 125 +++++---- lessR-4.5.2/lessR/R/Logit.R | 9 lessR-4.5.2/lessR/R/X.R | 12 lessR-4.5.2/lessR/R/XY.R | 7 lessR-4.5.2/lessR/R/bc.plotly.R | 44 ++- lessR-4.5.2/lessR/R/bubble.plotly.R | 139 +++++----- lessR-4.5.2/lessR/R/dn.plotly.R | 12 lessR-4.5.2/lessR/R/do.plotly.R | 126 ++++----- lessR-4.5.2/lessR/R/hier.plotly.R | 85 +++--- lessR-4.5.2/lessR/R/hs.plotly.R | 14 - lessR-4.5.2/lessR/R/hst.main.R | 15 - lessR-4.5.2/lessR/R/logit.4Pred.R | 33 +- lessR-4.5.2/lessR/R/piechart.plotly.R | 92 +++--- lessR-4.5.2/lessR/R/plt.by.legend.R | 17 - lessR-4.5.2/lessR/R/plt.forecast.R | 209 +++++++++------ lessR-4.5.2/lessR/R/plt.main.R | 14 - lessR-4.5.2/lessR/R/plt.plotly.R | 70 ++--- lessR-4.5.2/lessR/R/plt.time.R | 329 +++++++++++++++---------- lessR-4.5.2/lessR/R/radar.plotly.R | 84 +++--- lessR-4.5.2/lessR/R/savePlotly.R | 6 lessR-4.5.2/lessR/R/stats.R | 4 lessR-4.5.2/lessR/R/zzz.R | 2 lessR-4.5.2/lessR/R/zzz_plotly.R | 237 ++++++++++-------- lessR-4.5.2/lessR/R/zzz_ts.R | 31 +- lessR-4.5.2/lessR/data/dataStockPrice.rda |binary lessR-4.5.2/lessR/inst/doc/intro.Rmd | 6 lessR-4.5.2/lessR/inst/doc/intro.html | 251 ++++++++----------- lessR-4.5.2/lessR/inst/img/bcExplain.png |binary lessR-4.5.2/lessR/inst/img/bcXYExplain.png |binary lessR-4.5.2/lessR/inst/img/hsExplain.png |binary lessR-4.5.2/lessR/man/Chart.Rd | 2 lessR-4.5.2/lessR/man/Logit.Rd | 10 lessR-4.5.2/lessR/man/XY.Rd | 153 +++++++++-- lessR-4.5.2/lessR/vignettes/intro.Rmd | 6 40 files changed, 1306 insertions(+), 956 deletions(-)
Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of
isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>),
extended isolation forest (Hariri, Kind, Brunner (2018) <doi:10.48550/arXiv.1811.02141>),
SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>),
fair-cut forest (Cortes (2021) <doi:10.48550/arXiv.2110.13402>),
robust random-cut forest (Guha, Mishra, Roy, Schrijvers (2016) <http://proceedings.mlr.press/v48/guha16.html>),
and customizable variations of them, for isolation-based outlier detection, clustered outlier detection,
distance or similarity approximation (Cortes (2019) <doi:10.48550/arXiv.1910.12362>),
isolation kernel calculation (Ting, Zhu, Zhou (2018) <doi:10.1145/3219819.3219990>),
and imputation of missing values (Cortes (2019) <doi:10.48550/arXiv.1911.06646>),
based on random or guided decision tree splitting, and providing different metrics for
scoring anomalies based on isolation depth or density (Co [...truncated...]
Author: David Cortes [aut, cre, cph],
Thibaut Goetghebuer-Planchon [cph] ,
David Blackman [cph] ,
Sebastiano Vigna [cph] ,
NumPy Developers [cph] ,
SciPy Developers [cph] ,
Enthought Inc [cph] ,
Stephen Moshier [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between isotree versions 0.6.1-4 dated 2025-01-08 and 0.6.1-5 dated 2026-03-05
DESCRIPTION | 6 - LICENSE | 2 MD5 | 72 ++++++++++----------- NAMESPACE | 5 + R/helpers.R | 2 R/isoforest.R | 28 ++++---- inst/doc/An_Introduction_to_Isolation_Forests.Rmd | 2 inst/doc/An_Introduction_to_Isolation_Forests.html | 2 man/isolation.forest.Rd | 20 ++--- man/isotree.export.model.Rd | 2 man/isotree.restore.handle.Rd | 2 man/predict.isolation_forest.Rd | 4 - src/Rwrapper.cpp | 12 +-- src/crit.h | 6 - src/dist.h | 6 - src/extended.h | 4 - src/external_facing_generic.h | 2 src/fit_model.h | 16 ++-- src/formatted_exporters.cpp | 2 src/headers_joined.h | 2 src/helpers_iforest.h | 2 src/impute.h | 4 - src/indexer.cpp | 2 src/instantiate_template_headers.h | 2 src/isoforest.h | 4 - src/isotree.h | 11 ++- src/isotree_exportable.h |only src/merge_models.cpp | 6 - src/mult.h | 2 src/oop_interface.h |only src/other_helpers.h | 2 src/predict.h | 4 - src/ref_indexer.h | 2 src/serialize.cpp | 2 src/sql.cpp | 59 ++++++++--------- src/subset_models.cpp | 6 - src/utils.h | 28 ++++---- vignettes/An_Introduction_to_Isolation_Forests.Rmd | 2 38 files changed, 171 insertions(+), 164 deletions(-)
Title: Constrained Generalized Additive Model
Description: A constrained generalized additive model is fitted by the cgam routine. Given a set of predictors, each of which may have a shape or order restrictions, the maximum likelihood estimator for the constrained generalized additive model is found using an iteratively re-weighted cone projection algorithm. The ShapeSelect routine chooses a subset of predictor variables and describes the component relationships with the response. For each predictor, the user needs only specify a set of possible shape or order restrictions. A model selection method chooses the shapes and orderings of the relationships as well as the variables. The cone information criterion (CIC) is used to select the best combination of variables and shapes. A genetic algorithm may be used when the set of possible models is large. In addition, the cgam routine implements a two-dimensional isotonic regression using warped-plane splines without additivity assumptions. It can also fit a convex or concave regression surface with [...truncated...]
Author: Mary Meyer [aut],
Xiyue Liao [aut, cre]
Maintainer: Xiyue Liao <xliao@sdsu.edu>
Diff between cgam versions 1.31 dated 2026-02-08 and 1.32 dated 2026-03-05
cgam-1.31/cgam/man/ShapeSelect.Rd |only cgam-1.31/cgam/man/best.fit.Rd |only cgam-1.31/cgam/man/in.or.out.Rd |only cgam-1.31/cgam/man/shapes.Rd |only cgam-1.32/cgam/ChangeLog | 5 cgam-1.32/cgam/DESCRIPTION | 12 cgam-1.32/cgam/MD5 | 22 - cgam-1.32/cgam/NAMESPACE | 11 cgam-1.32/cgam/R/cgam.R | 580 ++++++++++++++---------------- cgam-1.32/cgam/R/cgamm.R | 180 ++++----- cgam-1.32/cgam/R/globals.R | 4 cgam-1.32/cgam/R/options.R |only cgam-1.32/cgam/R/shapeselect.R |only cgam-1.32/cgam/R/testpar.R | 335 +++++++++-------- cgam-1.32/cgam/man/shapeselect.Rd |only cgam-1.32/cgam/man/shapeselect_control.Rd |only 16 files changed, 587 insertions(+), 562 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-16 0.5.0
2020-08-17 0.4.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-16 1.1.2
2018-05-24 1.1.1
2016-12-06 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-09 0.1.2
2024-09-20 0.1.1
2024-07-03 0.1.0