Title: Calculates Safety Stopping Boundaries for a Single-Arm Trial
using Bayes
Description: Computation of stopping boundaries for a single-arm trial using a
Bayesian criterion. For each m<=n (n=total patient number of the
trial) the smallest number of observed toxicities is calculated leading
to the termination of the trial/accrual according to the specified criteria.
The probabilities of stopping the trial/accrual at and up until (resp.) the
m-th patient (m<=n) is also calculated. This design is more conservative than
the frequentist approach (using Clopper Pearson CIs) which might be preferred
as it concerns safety. See also Aamot et al. (2010) "Continuous monitoring of
toxicity in clinical Trials - simulating the risk of stopping prematurely"
<doi:10.5414/cpp48476>.
Author: NCT Trial Center, Heidelberg [aut],
Lisa-Marie Lanz [cre]
Maintainer: Lisa-Marie Lanz <studienzentrale@nct-heidelberg.de>
Diff between ToxCrit versions 1.0 dated 2021-10-01 and 1.1 dated 2026-03-05
ToxCrit-1.0/ToxCrit/README.md |only ToxCrit-1.1/ToxCrit/DESCRIPTION | 39 +++++------ ToxCrit-1.1/ToxCrit/MD5 | 9 +- ToxCrit-1.1/ToxCrit/NEWS.md | 5 - ToxCrit-1.1/ToxCrit/R/ToxCrit.R | 7 +- ToxCrit-1.1/ToxCrit/man/ToxCrit.Rd | 123 ++++++++++++++++++++----------------- 6 files changed, 97 insertions(+), 86 deletions(-)
Title: Explainable Outlier Detection Through Decision Tree Conditioning
Description: Outlier detection method that flags suspicious values within observations,
constrasting them against the normal values in a user-readable format, potentially
describing conditions within the data that make a given outlier more rare.
Full procedure is described in Cortes (2020) <doi:10.48550/arXiv.2001.00636>.
Loosely based on the 'GritBot' <https://www.rulequest.com/gritbot-info.html> software.
Author: David Cortes [aut, cre]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between outliertree versions 1.10.0 dated 2024-09-06 and 1.10.0-1 dated 2026-03-05
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/Introducing_OutlierTree.html | 4 ++-- src/Rwrapper.cpp | 6 +++--- 4 files changed, 11 insertions(+), 11 deletions(-)
Title: Solve Systems of Nonlinear Equations
Description: Solve a system of nonlinear equations using a Broyden or a Newton method
with a choice of global strategies such as line search and trust region.
There are options for using a numerical or user supplied Jacobian,
for specifying a banded numerical Jacobian and for allowing
a singular or ill-conditioned Jacobian.
Author: Berend Hasselman [aut] ,
Rob Carnell [aut, cre]
Maintainer: Rob Carnell <bertcarnell@gmail.com>
Diff between nleqslv versions 3.3.5 dated 2023-11-26 and 3.3.6 dated 2026-03-05
DESCRIPTION | 27 +- MD5 | 6 NEWS | 634 +++++++++++++++++++++++++++--------------------------- build/partial.rdb |binary 4 files changed, 343 insertions(+), 324 deletions(-)
Title: Analysis and Mining of Multilayer Social Networks
Description: Functions for the creation/generation and analysis of multilayer social networks <doi:10.18637/jss.v098.i08>.
Author: Matteo Magnani [aut, cre],
Luca Rossi [aut] ,
Davide Vega [aut] ,
Obaida Hanteer [ctb]
Maintainer: Matteo Magnani <matteo.magnani@it.uu.se>
This is a re-admission after prior archival of version 4.3.2 dated 2025-10-24
Diff between multinet versions 4.3.2 dated 2025-10-24 and 4.3.4 dated 2026-03-05
multinet-4.3.2/multinet/src/infomap |only multinet-4.3.2/multinet/src/src/community/_impl/infomap_utils.hpp |only multinet-4.3.2/multinet/src/src/community/infomap.hpp |only multinet-4.3.2/multinet/src/src/community/infomap.ipp |only multinet-4.3.4/multinet/DESCRIPTION | 28 +-- multinet-4.3.4/multinet/MD5 | 72 ---------- multinet-4.3.4/multinet/NEWS | 4 multinet-4.3.4/multinet/src/Makevars | 8 - multinet-4.3.4/multinet/src/Makevars.win | 8 - multinet-4.3.4/multinet/src/r_functions.cpp | 18 -- multinet-4.3.4/multinet/src/src/core/attributes/conversion.cpp | 27 ++- 11 files changed, 52 insertions(+), 113 deletions(-)
Title: 'ICESat-2' Altimeter Data using R
Description: Programmatic connection to the 'OpenAltimetry' API <https://openaltimetry.earthdatacloud.nasa.gov/data/openapi/swagger-ui/index.html/> to download and process 'ATL03' (Global 'Geolocated' Photon Data), 'ATL06' (Land Ice Height), 'ATL07' (Sea Ice Height), 'ATL08' (Land and Vegetation Height), 'ATL10' (Sea Ice 'Freeboard'), 'ATL12' (Ocean Surface Height) and 'ATL13' (Inland Water Surface Height) 'ICESat-2' Altimeter Data. The user has the option to download the data by selecting a bounding box from a 1- or 5-degree grid globally utilizing a shiny application. The 'ICESat-2' mission collects 'altimetry' data of the Earth's surface. The sole instrument on 'ICESat-2' is the Advanced Topographic Laser Altimeter System (ATLAS) instrument that measures ice sheet elevation change and sea ice thickness, while also generating an estimate of global vegetation biomass. 'ICESat-2' continues the important observations of ice-sheet elevation change, sea-ice 'freeboard', and vegetation canopy hei [...truncated...]
Author: Lampros Mouselimis [aut, cre] ,
OpenAltimetry.org [cph]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between IceSat2R versions 1.0.8 dated 2026-02-20 and 1.0.9 dated 2026-03-05
DESCRIPTION | 8 MD5 | 24 - NEWS.md | 5 README.md | 4 inst/doc/IceSat-2_Atlas_products_PDF.R | 341 +++++++++---------- inst/doc/IceSat-2_Atlas_products_PDF.Rmd | 341 +++++++++---------- inst/doc/IceSat-2_Atlas_products_PDF.pdf |binary inst/doc/IceSat-2_Mission_Orbits_PDF.R | 338 +++++++++--------- inst/doc/IceSat-2_Mission_Orbits_PDF.Rmd | 304 ++++++++-------- inst/doc/IceSat-2_Mission_Orbits_PDF.pdf |binary inst/doc/IceSat-2_Virtual_File_System_Orbits_PDF.pdf |binary vignettes/IceSat-2_Atlas_products_PDF.Rmd | 341 +++++++++---------- vignettes/IceSat-2_Mission_Orbits_PDF.Rmd | 304 ++++++++-------- 13 files changed, 979 insertions(+), 1031 deletions(-)
Title: Relational Data Models
Description: Provides tools for working with multiple related
tables, stored as data frames or in a relational database. Multiple
tables (data and metadata) are stored in a compound object, which can
then be manipulated with a pipe-friendly syntax.
Author: Tobias Schieferdecker [aut],
Kirill Mueller [aut, cre] ,
Antoine Fabri [ctb],
Darko Bergant [aut],
Katharina Brunner [ctb],
James Wondrasek [ctb],
Indrajeet Patil [ctb] ,
Maelle Salmon [ctb] ,
energie360 AG [fnd],
cynkra GmbH [fnd, cph]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between dm versions 1.1.0 dated 2026-02-25 and 1.1.1 dated 2026-03-05
DESCRIPTION | 8 +- MD5 | 34 ++++----- NEWS.md | 9 ++ R/dm.R | 1 R/igraph-fallback.R | 140 +++++++++++++++++++++++++++----------- inst/doc/dm.html | 4 - inst/doc/howto-dm-copy.html | 4 - inst/doc/howto-dm-db.html | 4 - inst/doc/howto-dm-df.html | 4 - inst/doc/howto-dm-rows.html | 4 - inst/doc/howto-dm-theory.html | 4 - inst/doc/tech-dm-cdm.html | 4 - inst/doc/tech-dm-class.html | 4 - inst/doc/tech-dm-draw.html | 4 - inst/doc/tech-dm-filter.html | 4 - inst/doc/tech-dm-join.html | 4 - inst/doc/tech-dm-low-level.html | 4 - tests/testthat/_snaps/duckplyr.md | 1 18 files changed, 157 insertions(+), 84 deletions(-)
Title: Data Access and Analytical Tools for 'VectorSurv' Users
Description: Allows registered 'VectorSurv' <https://vectorsurv.org/> users access to data through the 'VectorSurv API' <https://api.vectorsurv.org/>. Additionally provides functions for analysis and visualization.
Author: Christina De Cesaris [aut],
Lincoln Wells [aut],
VectorSurv Staff [aut, cre]
Maintainer: VectorSurv Staff <help@vectorsurv.org>
Diff between vectorsurvR versions 1.6.2 dated 2026-01-14 and 1.6.3 dated 2026-03-05
DESCRIPTION | 20 +++-- MD5 | 39 ++++++----- NAMESPACE | 27 +++++++ R/getAgency.R |only R/getRegions.R | 2 R/getSpatialFeatures.R | 1 R/getSpeciesTable.R | 85 ++++++++++++------------ R/getToken.R | 3 R/globals.R | 10 ++ R/plotInvasiveSums.R | 4 - R/plotPoolsMap.R |only R/plotSpeciesMap.R |only R/plotVectorAbundance.R | 2 R/utils-map.R |only inst/doc/vectorsurvR.Rmd | 2 inst/doc/vectorsurvR.html | 7 + man/getAgency.Rd |only man/getRegions.Rd | 34 ++++----- man/getSpeciesTable.Rd | 112 +++++++++++++++---------------- man/plotInvasiveSums.Rd | 61 +++++++++-------- man/plotPoolsMap.Rd |only man/plotSpeciesMap.Rd |only man/plotVectorAbundance.Rd | 158 ++++++++++++++++++++++----------------------- vignettes/vectorsurvR.Rmd | 2 24 files changed, 313 insertions(+), 256 deletions(-)
Title: A Curated Collection of Pulmonary and Respiratory Disease
Datasets
Description: Provides a comprehensive and curated collection of datasets related to the lungs, respiratory system, and associated diseases.
This package includes epidemiological, clinical, experimental, and simulated datasets on conditions such as lung cancer, asthma,
Chronic Obstructive Pulmonary Disease (COPD), tuberculosis, whooping cough, pneumonia, influenza, and other respiratory illnesses.
It is designed to support data exploration, statistical modeling, teaching, and research in pulmonary medicine, public health,
environmental epidemiology, and respiratory disease surveillance.
Author: Renzo Caceres Rossi [aut, cre]
Maintainer: Renzo Caceres Rossi <arenzocaceresrossi@gmail.com>
Diff between PulmoDataSets versions 0.2.0 dated 2025-09-07 and 0.2.1 dated 2026-03-05
DESCRIPTION | 6 - MD5 | 100 ++++++++++---------- NEWS.md | 9 + R/data-documentation.R | 8 - R/pulmodatasets-package.R | 2 R/view_datasets_PulmoDataSets.R | 2 README.md | 5 + build/vignette.rds |binary inst/CITATION | 5 - inst/doc/introduction_to_pulmodatasets.html | 11 +- inst/licenses/LICENSE | 4 man/children_respiratory_rates_df.Rd | 2 man/engwales_cancer_mortality_df.Rd | 2 man/neonatal_intubation_times_df.Rd | 2 tests/testthat/test-UK_female_lung_deaths_ts.R | 2 tests/testthat/test-UK_male_lung_deaths_ts.R | 2 tests/testthat/test-USMortality_df.R | 2 tests/testthat/test-USRegionalMortality_df.R | 2 tests/testthat/test-ai_ipn_performance_dt.R | 2 tests/testthat/test-air_polution_mortality_df.R | 2 tests/testthat/test-asthma_patients_tbl_df.R | 2 tests/testthat/test-bronchitis_Cardiff_df.R | 2 tests/testthat/test-chicago_pollution_df.R | 2 tests/testthat/test-child_wheeze_pollution_df.R | 2 tests/testthat/test-children_respiratory_rates_df.R | 2 tests/testthat/test-danish_lung_incidence_df.R | 2 tests/testthat/test-engwales_cancer_mortality_df.R | 2 tests/testthat/test-influenza_us_1975_df.R | 2 tests/testthat/test-lung_cancer_survival_df.R | 2 tests/testthat/test-lung_nodules_detection_dt.R | 2 tests/testthat/test-lungca_cancer_deaths_df.R | 2 tests/testthat/test-neonatal_intubation_times_df.R | 2 tests/testthat/test-nicotine_gum_df.R | 2 tests/testthat/test-ohio_children_wheeze_df.R | 2 tests/testthat/test-patients_lung_diseases_tbl_df.R | 2 tests/testthat/test-pneumonia_influenza_ts.R | 2 tests/testthat/test-respiratory_clinical_trial_df.R | 2 tests/testthat/test-respiratory_infections_df.R | 2 tests/testthat/test-respiratory_trial_df.R | 2 tests/testthat/test-respiratory_trial_outcomes_df.R | 2 tests/testthat/test-smoking_UK_tbl_df.R | 2 tests/testthat/test-smoking_doctors_df.R | 2 tests/testthat/test-smoking_lung_cancer_df.R | 2 tests/testthat/test-smoking_youth_tbl_df.R | 2 tests/testthat/test-tlc_lung_capacity_df.R | 2 tests/testthat/test-tuberculosis_vaccine_df.R | 2 tests/testthat/test-veterans_lung_cancer_df.R | 2 tests/testthat/test-view_datasets_PulmoDataSets.R | 2 tests/testthat/test-whooping_cough_dk_df.R | 2 tests/testthat/test-whooping_cough_phila_df.R | 2 tests/testthat/test-whooping_cough_ts.R | 2 51 files changed, 124 insertions(+), 108 deletions(-)
Title: Utilities for Scheduling Functions to Execute Later with Event
Loops
Description: Executes arbitrary R or C functions some time after the
current time, after the R execution stack has emptied. The functions
are scheduled in an event loop.
Author: Winston Chang [aut] ,
Joe Cheng [aut],
Charlie Gao [aut, cre] ,
Posit Software, PBC [cph, fnd] ,
Marcus Geelnard [ctb, cph] ,
Evan Nemerson [ctb, cph]
Maintainer: Charlie Gao <charlie.gao@posit.co>
Diff between later versions 1.4.7 dated 2026-02-24 and 1.4.8 dated 2026-03-05
DESCRIPTION | 6 +++--- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ inst/doc/later-cpp.html | 4 ++-- inst/include/later_api.h | 2 +- src/badthreads.h | 2 -- src/later.cpp | 2 +- src/later_win32.cpp | 2 +- src/tinycthread.h | 4 ++-- 9 files changed, 22 insertions(+), 20 deletions(-)
Title: Estimated Marginal Means, aka Least-Squares Means
Description: Obtain estimated marginal means (EMMs) for many linear, generalized
linear, and mixed models. Compute contrasts or linear functions of EMMs,
trends, and comparisons of slopes. Plots and other displays.
Least-squares means are discussed, and the term "estimated marginal means"
is suggested, in Searle, Speed, and Milliken (1980) Population marginal means
in the linear model: An alternative to least squares means, The American
Statistician 34(4), 216-221 <doi:10.1080/00031305.1980.10483031>.
Author: Russell V. Lenth [aut, cph],
Julia Piaskowski [cre, aut],
Balazs Banfai [ctb],
Ben Bolker [ctb],
Paul Buerkner [ctb],
Iago Gine-Vazquez [ctb],
Maxime Herve [ctb],
Maarten Jung [ctb],
Jonathon Love [ctb],
Fernando Miguez [ctb],
Hannes Riebl [ctb],
Hen [...truncated...]
Maintainer: Julia Piaskowski <julia.piask@gmail.com>
Diff between emmeans versions 2.0.1 dated 2025-12-16 and 2.0.2 dated 2026-03-05
DESCRIPTION | 12 MD5 | 350 +-- NAMESPACE | 535 ++--- NEWS.md | 2772 ++++++++++++++--------------- R/0nly-internal.R | 1148 ++++++------ R/MCMC-support.R | 1426 +++++++-------- R/S4-classes.R | 252 +- R/aovlist-support.R | 412 ++-- R/betareg.support.R | 262 +- R/brms-support.R | 64 R/cld-emm.R | 516 ++--- R/contrast.R | 1262 ++++++------- R/countreg-support.R | 638 +++--- R/datasets.R | 690 +++---- R/eff-size.R | 322 +-- R/emm-contr.R | 1142 ++++++------ R/emm-example.R | 152 - R/emm-list.R | 764 ++++---- R/emmGrid-methods.R | 2208 +++++++++++------------ R/emmeans-package.R | 246 +- R/emmeans.R | 1652 ++++++++--------- R/emmip.R | 1162 ++++++------ R/emtrends.R | 540 ++--- R/factors.R | 764 ++++---- R/gam-support.R | 560 ++--- R/glht-support.R | 488 ++--- R/helpers.R | 1790 +++++++++---------- R/interfacing.R | 920 ++++----- R/lqm-support.R | 244 +- R/models.R | 62 R/multinom-support.R | 268 +- R/multiple-models.R | 372 +-- R/multiv.R | 480 ++--- R/nested.R | 854 ++++----- R/nonlin-support.R | 288 +-- R/ordinal-support.R | 828 ++++---- R/plot.emm.R | 1222 ++++++------- R/pwpp.R | 1106 +++++------ R/qdrg.R | 602 +++--- R/rbind.R | 386 ++-- R/ref-grid.R | 2562 +++++++++++++-------------- R/rms-support.R | 238 +- R/sommer-support.R | 132 - R/summary.R | 2992 ++++++++++++++++---------------- R/test.R | 1090 +++++------ R/transformations.R | 958 +++++----- R/wrappers.R | 256 +- R/xtable-method.R | 258 +- R/zzz.R | 332 +-- README.md | 246 +- build/vignette.rds |binary inst/css/clean-simple.css | 78 inst/doc/AQuickStart.R | 8 inst/doc/AQuickStart.Rmd | 430 ++-- inst/doc/AQuickStart.html | 668 +++---- inst/doc/FAQs.R | 28 inst/doc/FAQs.Rmd | 960 +++++----- inst/doc/FAQs.html | 1232 ++++++------- inst/doc/basics.R | 302 +-- inst/doc/basics.Rmd | 1454 +++++++-------- inst/doc/basics.html | 1992 ++++++++++----------- inst/doc/comparisons.R | 188 +- inst/doc/comparisons.Rmd | 736 +++---- inst/doc/comparisons.html | 1138 +++++------- inst/doc/confidence-intervals.R | 138 - inst/doc/confidence-intervals.Rmd | 616 +++--- inst/doc/confidence-intervals.html | 1124 +++++------- inst/doc/interactions.R | 172 - inst/doc/interactions.Rmd | 734 +++---- inst/doc/interactions.html | 1258 ++++++------- inst/doc/messy-data.R | 265 +- inst/doc/messy-data.Rmd | 1099 +++++------ inst/doc/messy-data.html | 1624 ++++++++--------- inst/doc/models.Rmd | 1112 +++++------ inst/doc/models.html | 2212 +++++++++++------------ inst/doc/predictions.R | 78 inst/doc/predictions.Rmd | 326 +-- inst/doc/predictions.html | 541 ++--- inst/doc/re-engineering-clds.R | 54 inst/doc/re-engineering-clds.html | 734 +++---- inst/doc/re-engineering-clds.rmd | 472 ++--- inst/doc/sophisticated.R | 318 +-- inst/doc/sophisticated.Rmd | 954 +++++----- inst/doc/sophisticated.html | 1586 ++++++++-------- inst/doc/transformations.R | 402 ++-- inst/doc/transformations.Rmd | 1418 +++++++-------- inst/doc/transformations.html | 2052 ++++++++++----------- inst/doc/utilities.R | 180 - inst/doc/utilities.Rmd | 592 +++--- inst/doc/utilities.html | 1040 +++++------ inst/doc/vignette-topics.Rmd | 1610 ++++++++--------- inst/doc/vignette-topics.html | 2418 ++++++++++++------------- inst/doc/xplanations.R | 190 +- inst/doc/xplanations.Rmd | 784 ++++---- inst/doc/xplanations.html | 1174 ++++++------ inst/doc/xtending.R | 288 +-- inst/doc/xtending.Rmd | 1084 +++++------ inst/doc/xtending.html | 1838 +++++++++---------- inst/extexamples/as.mcmc-coda.R | 16 inst/extexamples/cld-multcomp.R | 14 inst/extexamples/glht-multcomp.R | 24 inst/extexamples/hpd.summary-coda.R | 18 inst/extexamples/mvregrid.R | 24 inst/extexamples/qdrg-biglm.R | 20 inst/extexamples/qdrg-coda.R | 14 inst/extexamples/qdrg-ordinal.R | 12 inst/extexamples/xtable.R | 6 man/CLD.emmGrid.Rd | 214 +- man/MOats.Rd | 94 - man/as.emmGrid.Rd | 132 - man/auto.noise.Rd | 124 - man/contrast.Rd | 466 ++-- man/eff_size.Rd | 248 +- man/emmGrid-class.Rd | 196 +- man/emmGrid-methods.Rd | 108 - man/emm_example.Rd | 66 man/emm_list-object.Rd | 208 +- man/emm_options.Rd | 450 ++-- man/emmc-functions.Rd | 462 ++-- man/emmeans-package.Rd | 200 +- man/emmeans.Rd | 508 ++--- man/emmip.Rd | 495 ++--- man/emmobj.Rd | 214 +- man/emtrends.Rd | 278 +- man/extending-emmeans.Rd | 712 +++---- man/feedlot.Rd | 102 - man/fiber.Rd | 82 man/glht-support.Rd | 152 - man/hpd.summary.Rd | 190 +- man/joint_tests.Rd | 392 ++-- man/make.tran.Rd | 392 ++-- man/manip-factors.Rd | 386 ++-- man/mcmc-support.Rd | 208 +- man/models.Rd | 18 man/mvcontrast.Rd | 162 - man/mvregrid.Rd | 102 - man/neuralgia.Rd | 86 man/nutrition.Rd | 102 - man/oranges.Rd | 94 - man/pigs.Rd | 68 man/plot.Rd | 332 +-- man/pwpm.Rd | 148 - man/pwpp.Rd | 242 +- man/qdrg.Rd | 272 +- man/rbind.emmGrid.Rd | 238 +- man/ref_grid.Rd | 932 ++++----- man/regrid.Rd | 260 +- man/summary.emmGrid.Rd | 994 +++++----- man/ubds.Rd | 80 man/untidy.Rd | 62 man/update.emmGrid.Rd | 562 +++--- man/wrappers.Rd | 126 - man/xtable.emmGrid.Rd | 128 - tests/testthat.R | 8 tests/testthat/test-contrast.R | 70 tests/testthat/test-emmeans.R | 62 tests/testthat/test-emtrends.R | 42 tests/testthat/test-nested.R | 74 tests/testthat/test-ref_grid.R | 188 +- tests/testthat/test-utility_functions.R | 44 vignettes/AQuickStart.Rmd | 430 ++-- vignettes/FAQs.Rmd | 960 +++++----- vignettes/basics.Rmd | 1454 +++++++-------- vignettes/comparisons.Rmd | 736 +++---- vignettes/confidence-intervals.Rmd | 616 +++--- vignettes/interactions.Rmd | 734 +++---- vignettes/messy-data.Rmd | 1099 +++++------ vignettes/models.Rmd | 1112 +++++------ vignettes/predictions.Rmd | 326 +-- vignettes/re-engineering-clds.rmd | 472 ++--- vignettes/sophisticated.Rmd | 954 +++++----- vignettes/transformations.Rmd | 1418 +++++++-------- vignettes/utilities.Rmd | 592 +++--- vignettes/vignette-topics.Rmd | 1610 ++++++++--------- vignettes/xplanations.Rmd | 784 ++++---- vignettes/xtending.Rmd | 1084 +++++------ 176 files changed, 52669 insertions(+), 52961 deletions(-)
Title: Text Cleaning Tools
Description: Tools to clean and process text. Tools are geared at checking for substrings that
are not optimal for analysis and replacing or removing them (normalizing) with more
analysis friendly substrings (see Sproat, Black, Chen, Kumar, Ostendorf, & Richards
(2001) <doi:10.1006/csla.2001.0169>) or extracting them into new variables. For
example, emoticons are often used in text but not always easily handled by analysis
algorithms. The replace_emoticon() function replaces emoticons with word
equivalents.
Author: Tyler Rinker [aut, cre],
ctwheels StackOverflow [ctb],
Surin Space [ctb]
Maintainer: Tyler Rinker <tyler.rinker@gmail.com>
Diff between textclean versions 0.9.3 dated 2018-07-23 and 0.9.7 dated 2026-03-05
textclean-0.9.3/textclean/NEWS |only textclean-0.9.3/textclean/R/filter_element.R |only textclean-0.9.3/textclean/R/filter_row.R |only textclean-0.9.3/textclean/man/filter_element.Rd |only textclean-0.9.3/textclean/man/filter_row.Rd |only textclean-0.9.3/textclean/man/textclean.Rd |only textclean-0.9.7/textclean/DESCRIPTION | 43 textclean-0.9.7/textclean/MD5 | 212 textclean-0.9.7/textclean/NAMESPACE | 154 textclean-0.9.7/textclean/NEWS.md |only textclean-0.9.7/textclean/R/add_comma_space.R | 38 textclean-0.9.7/textclean/R/add_missing_endmark.R | 60 textclean-0.9.7/textclean/R/check_text.R | 581 - textclean-0.9.7/textclean/R/check_text_logicals.R | 947 +-- textclean-0.9.7/textclean/R/drop_element.R | 164 textclean-0.9.7/textclean/R/drop_row.R | 206 textclean-0.9.7/textclean/R/fgsub.R | 372 - textclean-0.9.7/textclean/R/fix_mdyyyy.R |only textclean-0.9.7/textclean/R/glue-reexports.R | 14 textclean-0.9.7/textclean/R/has_endmark.R | 68 textclean-0.9.7/textclean/R/like.R |only textclean-0.9.7/textclean/R/make_plural.R | 66 textclean-0.9.7/textclean/R/match_tokens.R | 60 textclean-0.9.7/textclean/R/mgsub.R | 366 - 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Title: Species Sensitivity Distributions
Description: Species sensitivity distributions are cumulative probability
distributions which are fitted to toxicity concentrations for
different species as described by Posthuma et al.(2001)
<isbn:9781566705783>. The ssdtools package uses Maximum Likelihood to
fit distributions such as the gamma, log-logistic, log-normal and
log-normal log-normal mixture. Multiple distributions can be averaged
using Akaike Information Criteria. Confidence intervals on hazard
concentrations and proportions are produced by bootstrapping.
Author: Joe Thorley [aut, cre] ,
Rebecca Fisher [aut],
David Fox [aut],
Carl Schwarz [aut],
Angeline Tillmanns [ctb],
Seb Dalgarno [ctb] ,
Kathleen McTavish [ctb],
Heather Thompson [ctb],
Doug Spry [ctb],
Rick van Dam [ctb],
Graham Batley [ctb],
Ali Azizishi [...truncated...]
Maintainer: Joe Thorley <joe@poissonconsulting.ca>
Diff between ssdtools versions 2.5.0 dated 2025-12-01 and 2.6.0 dated 2026-03-05
DESCRIPTION | 6 - MD5 | 57 ++++++------- NEWS.md | 9 +- R/bcanz.R | 25 ++--- R/hc-burrlioz.R | 2 R/hc.R | 7 + R/hp.R | 4 R/plot-cdf.R | 17 ++- R/predict.R | 4 inst/doc/faqs.html | 4 inst/doc/ssdtools.Rmd | 2 inst/doc/ssdtools.html | 10 +- man/predict.fitburrlioz.Rd | 2 man/predict.fitdists.Rd | 2 man/ssd_fit_bcanz.Rd | 13 ++ man/ssd_hc.Rd | 4 man/ssd_hc_bcanz.Rd | 16 +++ man/ssd_hc_burrlioz.Rd | 2 man/ssd_hp.Rd | 4 man/ssd_hp_bcanz.Rd | 8 + man/ssd_plot_cdf.Rd | 9 +- src/TMB/ssdtools_TMBExports.cpp | 3 tests/testthat/_snaps/bcanz/hc_chloride.csv | 8 - tests/testthat/_snaps/bcanz/hp_chloride.csv | 2 tests/testthat/_snaps/bcanz/hp_chloride_proportion.csv | 2 tests/testthat/_snaps/plot-cdf/fits_average_est_method.png |only tests/testthat/helper.R | 2 tests/testthat/test-bcanz.R | 6 - tests/testthat/test-plot-cdf.R | 1 vignettes/ssdtools.Rmd | 2 30 files changed, 144 insertions(+), 89 deletions(-)
Title: Project Environments
Description: A dependency management toolkit for R. Using 'renv', you can create
and manage project-local R libraries, save the state of these libraries to
a 'lockfile', and later restore your library as required. Together, these
tools can help make your projects more isolated, portable, and reproducible.
Author: Kevin Ushey [aut, cre] ,
Hadley Wickham [aut] ,
Posit Software, PBC [cph, fnd]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between renv versions 1.1.7 dated 2026-01-27 and 1.1.8 dated 2026-03-05
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- NEWS.md | 5 +++++ inst/ext/renv.c | 28 +++++++++++++++++++++------- 4 files changed, 33 insertions(+), 14 deletions(-)
Title: Less Code with More Comprehensive Results
Description: Each function replaces multiple standard R functions. For example,
two function calls, Read() and CountAll(), generate summary statistics for
all variables in the data frame, plus histograms and bar charts. Other
functions provide data aggregation via pivot tables; comprehensive
regression, ANOVA, and t-test; visualizations including integrated
Violin/Box/Scatter plot for a numerical variable, bar chart, histogram,
box plot, density curves, calibrated power curve; reading multiple data
formats with the same call; variable labels; time series with aggregation
and forecasting; color themes; and Trellis (facet) graphics. Also includes
a confirmatory factor analysis of multiple-indicator measurement models,
pedagogical routines for data simulation (e.g., Central Limit Theorem),
generation and rendering of regression instructions for interpretative output,
and both interactive construction of visualizations and interactive
visualizations with plotly.
Author: David W. Gerbing [aut, cre]
Maintainer: David W. Gerbing <gerbing@pdx.edu>
Diff between lessR versions 4.5.1 dated 2026-01-22 and 4.5.2 dated 2026-03-05
lessR-4.5.1/lessR/R/plt.time_truncate_groups.R |only lessR-4.5.1/lessR/inst/img/bc2Explain.png |only lessR-4.5.2/lessR/DESCRIPTION | 6 lessR-4.5.2/lessR/MD5 | 76 ++--- lessR-4.5.2/lessR/NAMESPACE | 2 lessR-4.5.2/lessR/NEWS.md | 34 ++ lessR-4.5.2/lessR/R/Chart.R | 125 +++++---- lessR-4.5.2/lessR/R/Logit.R | 9 lessR-4.5.2/lessR/R/X.R | 12 lessR-4.5.2/lessR/R/XY.R | 7 lessR-4.5.2/lessR/R/bc.plotly.R | 44 ++- lessR-4.5.2/lessR/R/bubble.plotly.R | 139 +++++----- lessR-4.5.2/lessR/R/dn.plotly.R | 12 lessR-4.5.2/lessR/R/do.plotly.R | 126 ++++----- lessR-4.5.2/lessR/R/hier.plotly.R | 85 +++--- lessR-4.5.2/lessR/R/hs.plotly.R | 14 - lessR-4.5.2/lessR/R/hst.main.R | 15 - lessR-4.5.2/lessR/R/logit.4Pred.R | 33 +- lessR-4.5.2/lessR/R/piechart.plotly.R | 92 +++--- lessR-4.5.2/lessR/R/plt.by.legend.R | 17 - lessR-4.5.2/lessR/R/plt.forecast.R | 209 +++++++++------ lessR-4.5.2/lessR/R/plt.main.R | 14 - lessR-4.5.2/lessR/R/plt.plotly.R | 70 ++--- lessR-4.5.2/lessR/R/plt.time.R | 329 +++++++++++++++---------- lessR-4.5.2/lessR/R/radar.plotly.R | 84 +++--- lessR-4.5.2/lessR/R/savePlotly.R | 6 lessR-4.5.2/lessR/R/stats.R | 4 lessR-4.5.2/lessR/R/zzz.R | 2 lessR-4.5.2/lessR/R/zzz_plotly.R | 237 ++++++++++-------- lessR-4.5.2/lessR/R/zzz_ts.R | 31 +- lessR-4.5.2/lessR/data/dataStockPrice.rda |binary lessR-4.5.2/lessR/inst/doc/intro.Rmd | 6 lessR-4.5.2/lessR/inst/doc/intro.html | 251 ++++++++----------- lessR-4.5.2/lessR/inst/img/bcExplain.png |binary lessR-4.5.2/lessR/inst/img/bcXYExplain.png |binary lessR-4.5.2/lessR/inst/img/hsExplain.png |binary lessR-4.5.2/lessR/man/Chart.Rd | 2 lessR-4.5.2/lessR/man/Logit.Rd | 10 lessR-4.5.2/lessR/man/XY.Rd | 153 +++++++++-- lessR-4.5.2/lessR/vignettes/intro.Rmd | 6 40 files changed, 1306 insertions(+), 956 deletions(-)
Title: Isolation-Based Outlier Detection
Description: Fast and multi-threaded implementation of
isolation forest (Liu, Ting, Zhou (2008) <doi:10.1109/ICDM.2008.17>),
extended isolation forest (Hariri, Kind, Brunner (2018) <doi:10.48550/arXiv.1811.02141>),
SCiForest (Liu, Ting, Zhou (2010) <doi:10.1007/978-3-642-15883-4_18>),
fair-cut forest (Cortes (2021) <doi:10.48550/arXiv.2110.13402>),
robust random-cut forest (Guha, Mishra, Roy, Schrijvers (2016) <http://proceedings.mlr.press/v48/guha16.html>),
and customizable variations of them, for isolation-based outlier detection, clustered outlier detection,
distance or similarity approximation (Cortes (2019) <doi:10.48550/arXiv.1910.12362>),
isolation kernel calculation (Ting, Zhu, Zhou (2018) <doi:10.1145/3219819.3219990>),
and imputation of missing values (Cortes (2019) <doi:10.48550/arXiv.1911.06646>),
based on random or guided decision tree splitting, and providing different metrics for
scoring anomalies based on isolation depth or density (Co [...truncated...]
Author: David Cortes [aut, cre, cph],
Thibaut Goetghebuer-Planchon [cph] ,
David Blackman [cph] ,
Sebastiano Vigna [cph] ,
NumPy Developers [cph] ,
SciPy Developers [cph] ,
Enthought Inc [cph] ,
Stephen Moshier [cph]
Maintainer: David Cortes <david.cortes.rivera@gmail.com>
Diff between isotree versions 0.6.1-4 dated 2025-01-08 and 0.6.1-5 dated 2026-03-05
DESCRIPTION | 6 - LICENSE | 2 MD5 | 72 ++++++++++----------- NAMESPACE | 5 + R/helpers.R | 2 R/isoforest.R | 28 ++++---- inst/doc/An_Introduction_to_Isolation_Forests.Rmd | 2 inst/doc/An_Introduction_to_Isolation_Forests.html | 2 man/isolation.forest.Rd | 20 ++--- man/isotree.export.model.Rd | 2 man/isotree.restore.handle.Rd | 2 man/predict.isolation_forest.Rd | 4 - src/Rwrapper.cpp | 12 +-- src/crit.h | 6 - src/dist.h | 6 - src/extended.h | 4 - src/external_facing_generic.h | 2 src/fit_model.h | 16 ++-- src/formatted_exporters.cpp | 2 src/headers_joined.h | 2 src/helpers_iforest.h | 2 src/impute.h | 4 - src/indexer.cpp | 2 src/instantiate_template_headers.h | 2 src/isoforest.h | 4 - src/isotree.h | 11 ++- src/isotree_exportable.h |only src/merge_models.cpp | 6 - src/mult.h | 2 src/oop_interface.h |only src/other_helpers.h | 2 src/predict.h | 4 - src/ref_indexer.h | 2 src/serialize.cpp | 2 src/sql.cpp | 59 ++++++++--------- src/subset_models.cpp | 6 - src/utils.h | 28 ++++---- vignettes/An_Introduction_to_Isolation_Forests.Rmd | 2 38 files changed, 171 insertions(+), 164 deletions(-)
Title: Constrained Generalized Additive Model
Description: A constrained generalized additive model is fitted by the cgam routine. Given a set of predictors, each of which may have a shape or order restrictions, the maximum likelihood estimator for the constrained generalized additive model is found using an iteratively re-weighted cone projection algorithm. The ShapeSelect routine chooses a subset of predictor variables and describes the component relationships with the response. For each predictor, the user needs only specify a set of possible shape or order restrictions. A model selection method chooses the shapes and orderings of the relationships as well as the variables. The cone information criterion (CIC) is used to select the best combination of variables and shapes. A genetic algorithm may be used when the set of possible models is large. In addition, the cgam routine implements a two-dimensional isotonic regression using warped-plane splines without additivity assumptions. It can also fit a convex or concave regression surface with [...truncated...]
Author: Mary Meyer [aut],
Xiyue Liao [aut, cre]
Maintainer: Xiyue Liao <xliao@sdsu.edu>
Diff between cgam versions 1.31 dated 2026-02-08 and 1.32 dated 2026-03-05
cgam-1.31/cgam/man/ShapeSelect.Rd |only cgam-1.31/cgam/man/best.fit.Rd |only cgam-1.31/cgam/man/in.or.out.Rd |only cgam-1.31/cgam/man/shapes.Rd |only cgam-1.32/cgam/ChangeLog | 5 cgam-1.32/cgam/DESCRIPTION | 12 cgam-1.32/cgam/MD5 | 22 - cgam-1.32/cgam/NAMESPACE | 11 cgam-1.32/cgam/R/cgam.R | 580 ++++++++++++++---------------- cgam-1.32/cgam/R/cgamm.R | 180 ++++----- cgam-1.32/cgam/R/globals.R | 4 cgam-1.32/cgam/R/options.R |only cgam-1.32/cgam/R/shapeselect.R |only cgam-1.32/cgam/R/testpar.R | 335 +++++++++-------- cgam-1.32/cgam/man/shapeselect.Rd |only cgam-1.32/cgam/man/shapeselect_control.Rd |only 16 files changed, 587 insertions(+), 562 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-12-09 0.1.2
2024-09-20 0.1.1
2024-07-03 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-02-16 1.1.2
2018-05-24 1.1.1
2016-12-06 1.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-01-16 0.5.0
2020-08-17 0.4.0