Title: Measuring Disparity
Description: A modular package for measuring disparity (multidimensional space occupancy). Disparity can be calculated from any matrix defining a multidimensional space. The package provides a set of implemented metrics to measure properties of the space and allows users to provide and test their own metrics. The package also provides functions for looking at disparity in a serial way (e.g. disparity through time) or per groups as well as visualising the results. Finally, this package provides several statistical tests for disparity analysis.
Author: Thomas Guillerme [aut, cre, cph] ,
Jack Hatfield [aut, cph],
Mark Puttick [aut, cph],
Caleb Scutt [aut, cph]
Maintainer: Thomas Guillerme <guillert@tcd.ie>
Diff between dispRity versions 1.9 dated 2024-11-13 and 1.9.12 dated 2026-07-25
DESCRIPTION | 20 MD5 | 71 - NEWS.md | 61 + R/MCMCglmm.subsets.R | 3 R/chrono.subsets.R | 13 R/chrono.subsets_fun.R | 2 R/custom.subsets.R | 8 R/custom.subsets_fun.R | 2 R/dispRity.R | 6 R/dispRity.covar.projections.R | 2 R/dispRity.metric.R | 3 R/dispRity.utilities.R | 19 R/dispRity_fun.R | 79 + R/multi.ace.R | 1266 ++++++++++++++++------------ R/multi.ace_fun.R | 174 ++- R/plot.dispRity_fun.R | 6 R/print.dispRity.R | 30 R/reduce.space.R | 1 R/sanitizing.R | 5 R/summary.dispRity.R | 6 build/partial.rdb |binary data/BeckLee_ages.rda |binary data/BeckLee_disparity.rda |binary data/BeckLee_mat50.rda |binary data/BeckLee_mat99.rda |binary data/BeckLee_tree.rda |binary data/charadriiformes.rda |binary data/demo_data.rda |binary data/disparity.rda |binary inst/vignettes/Developer_resources.Rmd | 1 inst/vignettes/select_disparity_metrics.Rmd |only man/chrono.subsets.Rd | 4 man/dispRity-package.Rd | 7 man/dispRity.covar.projections.Rd | 2 man/multi.ace.Rd | 73 + man/reduce.space.Rd | 1 src/char.diff.c | 3 37 files changed, 1161 insertions(+), 707 deletions(-)
Title: Mapping Data for 'usmap' Package
Description: Provides a container for data used by the 'usmap' package.
The data used by 'usmap' has been extracted into this package so that the
file size of the 'usmap' package can be reduced greatly. The data in this
package will be updated roughly once per year as new map data files are
provided by the US Census Bureau.
Author: Paolo Di Lorenzo [aut, cre]
Maintainer: Paolo Di Lorenzo <paolo@dilorenzo.org>
Diff between usmapdata versions 1.0.0 dated 2025-08-22 and 1.1.0 dated 2026-07-25
DESCRIPTION | 8 ++++---- MD5 | 8 ++++++-- NEWS.md | 7 ++++++- inst/extdata/2025 |only 4 files changed, 16 insertions(+), 7 deletions(-)
Title: Tests for Rotational Symmetry on the Hypersphere
Description: Implementation of the tests for rotational symmetry on the
hypersphere proposed in García-Portugués, Paindaveine and Verdebout (2020)
<doi:10.1080/01621459.2019.1665527>. The package also implements the
proposed distributions on the hypersphere, based on the tangent-normal
decomposition, and allows for the replication of the data application
considered in the paper.
Author: Eduardo Garcia-Portugues [aut, cre] ,
Davy Paindaveine [aut],
Thomas Verdebout [aut]
Maintainer: Eduardo Garcia-Portugues <edgarcia@est-econ.uc3m.es>
Diff between rotasym versions 1.2.0 dated 2025-07-27 and 1.3.1 dated 2026-07-25
DESCRIPTION | 11 -- MD5 | 70 +++++++------ NEWS.md | 17 +++ R/ACG.R | 50 ++++----- R/TE.R | 40 +++---- R/TM.R | 40 +++---- R/auxiliary.R | 5 R/cosines-signs.R | 119 ++++++++++------------ R/data.R | 60 +++++------ R/estimators.R | 55 ++++------ R/rotasym-package.R | 15 +- R/tang-norm.R | 130 +++++++++++-------------- R/tests.R | 176 +++++++++++++++------------------- R/unif.R | 38 +++---- R/vMF.R | 83 ++++++++-------- build/partial.rdb |binary man/ACG.Rd | 53 ++++------ man/check_unit_norm.Rd | 7 - man/cosines-signs.Rd | 114 ++++++++++------------ man/estimators.Rd | 57 +++++------ man/figures |only man/rotasym-package.Rd | 14 +- man/sunspots.Rd | 60 +++++------ man/tang-norm-decomp.Rd | 123 +++++++++++------------ man/tangent-elliptical.Rd | 47 ++++----- man/tangent-vMF.Rd | 47 ++++----- man/test_rotasym.Rd | 170 +++++++++++++++----------------- man/unif.Rd | 36 +++--- man/vMF.Rd | 69 +++++-------- src/vMF.cpp | 7 - tests/testthat/helper-distributions.R |only tests/testthat/test_ACG.R |only tests/testthat/test_TE.R |only tests/testthat/test_TM.R |only tests/testthat/test_auxiliary.R |only tests/testthat/test_cosines_signs.R |only tests/testthat/test_estimators.R |only tests/testthat/test_g_vMF.R |only tests/testthat/test_tang_norm.R |only tests/testthat/test_test_rotasym.R |only tests/testthat/test_unif.R |only tests/testthat/test_vMF.R | 41 +++++++ 42 files changed, 845 insertions(+), 909 deletions(-)
Title: Dynamically Generate 'Quarto' Syntax
Description: Provides helper functions to work programmatically within a 'Quarto' document. It allows
the user to create section headers, tabsets, divs, and spans, and formats these objects
into 'Quarto' syntax when printed into a document.
Author: Danielle Navarro [aut, cre, cph]
Maintainer: Danielle Navarro <djnavarro@protonmail.com>
Diff between quartose versions 0.1.0 dated 2025-07-09 and 0.2.0 dated 2026-07-25
DESCRIPTION | 26 ++--- MD5 | 32 +++--- NAMESPACE | 2 NEWS.md | 69 +++++++++++++ R/class.R | 68 +++++++++---- R/format.R | 126 ++++++++++++++++++++---- R/print.R | 46 ++++++-- R/validate.R | 63 ++++++++++++ README.md | 26 +++++ inst/WORDLIST | 15 ++ man/as_quarto_graphic.Rd |only man/quarto_format.Rd | 23 +++- man/quarto_object.Rd | 22 ++-- man/quarto_print.Rd | 11 ++ tests/testthat/Rplots.pdf |only tests/testthat/helper-graphics.R |only tests/testthat/test-format.R | 196 +++++++++++++++++++++++++++++++++++++- tests/testthat/test-integration.R |only tests/testthat/test-validate.R | 119 ++++++++++++++++++++++- 19 files changed, 753 insertions(+), 91 deletions(-)
Title: Visualizations for 'mlr3'
Description: Visualization package of the 'mlr3' ecosystem. It features
plots for mlr3 objects such as tasks, learners, predictions, benchmark
results, tuning instances and filters via the 'autoplot()' generic of
'ggplot2'. The package draws plots with the 'viridis' color palette
and applies the minimal theme. Visualizations include barplots,
boxplots, histograms, ROC curves, and Precision-Recall curves.
Author: Michel Lang [aut] ,
Patrick Schratz [aut] ,
Raphael Sonabend [aut] ,
Marc Becker [cre, aut] ,
Jakob Richter [aut] ,
Damir Pulatov [ctb],
John Zobolas [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3viz versions 0.11.0 dated 2026-02-22 and 0.11.1 dated 2026-07-25
DESCRIPTION | 8 MD5 | 140 - NEWS.md | 5 R/BenchmarkResult.R | 29 R/EnsembleFSResult.R | 91 R/Filter.R | 19 R/LearnerClassif.R | 37 R/LearnerClassifCVGlmnet.R | 14 R/LearnerClassifGlmnet.R | 17 R/LearnerClassifRpart.R | 35 R/LearnerClustHierarchical.R | 22 R/LearnerRegr.R | 42 R/LearnerRegrCVGlmnet.R | 14 R/LearnerRegrGlmnet.R | 14 R/LearnerRegrRpart.R | 27 R/OptimInstanceBatchSingleCrit.R | 164 + R/Prediction.R | 3 R/PredictionClassif.R | 30 R/PredictionClust.R | 14 R/PredictionRegr.R | 77 R/ResampleResult.R | 158 - R/Task.R | 3 R/TaskClassif.R | 46 R/TaskClust.R | 30 R/TaskRegr.R | 53 R/TuningInstanceBatchSingleCrit.R | 22 R/as_precrec.R | 9 R/helper.R | 7 R/plot_learner_prediction.R | 8 README.md | 2 build/partial.rdb |binary man/autoplot.BenchmarkResult.Rd | 9 man/autoplot.EnsembleFSResult.Rd | 6 man/autoplot.Filter.Rd | 2 man/autoplot.LearnerClassif.Rd | 4 man/autoplot.LearnerClassifGlmnet.Rd | 7 man/autoplot.LearnerClassifRpart.Rd | 6 man/autoplot.LearnerClustHierarchical.Rd | 5 man/autoplot.LearnerRegr.Rd | 2 man/autoplot.OptimInstanceBatchSingleCrit.Rd | 2 man/autoplot.PredictionClassif.Rd | 5 man/autoplot.PredictionClust.Rd | 2 man/autoplot.PredictionRegr.Rd | 11 man/autoplot.ResampleResult.Rd | 8 man/autoplot.TaskClassif.Rd | 2 man/autoplot.TaskClust.Rd | 2 man/autoplot.TaskRegr.Rd | 2 man/autoplot.TuningInstanceBatchSingleCrit.Rd | 2 man/figures/logo.png |binary man/mlr3viz-package.Rd | 1 man/plot_learner_prediction.Rd | 8 man/reexports.Rd | 2 tests/testthat/_snaps/BenchmarkResult/bmr-boxplot.svg | 52 tests/testthat/_snaps/BenchmarkResult/bmr-holdout-ci.svg | 52 tests/testthat/_snaps/BenchmarkResult/bmr-holdout-roc.svg | 4 tests/testthat/_snaps/BenchmarkResult/bmr-prc.svg | 18 tests/testthat/_snaps/BenchmarkResult/bmr-roc.svg | 8 tests/testthat/_snaps/LearnerClassif/learner-classif-prob.svg | 1053 ++-------- tests/testthat/_snaps/LearnerClassif/learner-classif-response.svg | 1035 ++------- tests/testthat/_snaps/plot_learner_prediction/learner-prediction-binary-prob.svg | 36 tests/testthat/_snaps/plot_learner_prediction/learner-prediction-categorical.svg | 18 tests/testthat/setup.R | 1 tests/testthat/test_BenchmarkResult.R | 30 tests/testthat/test_EnsembleFSResult.R | 10 tests/testthat/test_LearnerClassif.R | 4 tests/testthat/test_LearnerClassifCVGlmnet.R | 4 tests/testthat/test_LearnerRegr.R | 1 tests/testthat/test_OptimInstanceSingleCrit.R | 3 tests/testthat/test_PredictionClust.R | 4 tests/testthat/test_ResampleResult.R | 35 tests/testthat/test_TuningInstanceSingleCrit.R | 3 71 files changed, 1464 insertions(+), 2135 deletions(-)
Title: Hyperparameter Optimization for 'mlr3'
Description: Hyperparameter optimization package of the 'mlr3' ecosystem.
It features highly configurable search spaces via the 'paradox'
package and finds optimal hyperparameter configurations for any 'mlr3'
learner. 'mlr3tuning' works with several optimization algorithms e.g.
Random Search, Iterated Racing, Bayesian Optimization (in 'mlr3mbo')
and Hyperband (in 'mlr3hyperband'). Moreover, it can automatically
optimize learners and estimate the performance of optimized models
with nested resampling.
Author: Marc Becker [cre, aut] ,
Michel Lang [aut] ,
Jakob Richter [aut] ,
Bernd Bischl [aut] ,
Daniel Schalk [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuning versions 1.6.0 dated 2026-03-16 and 1.6.1 dated 2026-07-25
mlr3tuning-1.6.0/mlr3tuning/tests/testthat/helper_rush.R |only mlr3tuning-1.6.1/mlr3tuning/DESCRIPTION | 10 mlr3tuning-1.6.1/mlr3tuning/MD5 | 292 +++--- mlr3tuning-1.6.1/mlr3tuning/NEWS.md | 34 mlr3tuning-1.6.1/mlr3tuning/R/ArchiveAsyncTuning.R | 121 +- mlr3tuning-1.6.1/mlr3tuning/R/ArchiveAsyncTuningFrozen.R | 98 +- mlr3tuning-1.6.1/mlr3tuning/R/ArchiveBatchTuning.R | 84 + mlr3tuning-1.6.1/mlr3tuning/R/AutoTuner.R | 204 +++- mlr3tuning-1.6.1/mlr3tuning/R/CallbackAsyncTuning.R | 115 +- mlr3tuning-1.6.1/mlr3tuning/R/CallbackBatchTuning.R | 102 +- mlr3tuning-1.6.1/mlr3tuning/R/ContextAsyncTuning.R | 22 mlr3tuning-1.6.1/mlr3tuning/R/ContextBatchTuning.R | 24 mlr3tuning-1.6.1/mlr3tuning/R/ObjectiveTuning.R | 18 mlr3tuning-1.6.1/mlr3tuning/R/ObjectiveTuningAsync.R | 42 mlr3tuning-1.6.1/mlr3tuning/R/ObjectiveTuningBatch.R | 46 - mlr3tuning-1.6.1/mlr3tuning/R/Tuner.R | 46 - mlr3tuning-1.6.1/mlr3tuning/R/TunerAsync.R | 8 mlr3tuning-1.6.1/mlr3tuning/R/TunerAsyncDesignPoints.R | 4 mlr3tuning-1.6.1/mlr3tuning/R/TunerAsyncFromOptimizerAsync.R | 113 +- mlr3tuning-1.6.1/mlr3tuning/R/TunerAsyncGridSearch.R | 22 mlr3tuning-1.6.1/mlr3tuning/R/TunerAsyncRandomSearch.R | 20 mlr3tuning-1.6.1/mlr3tuning/R/TunerBatch.R | 32 mlr3tuning-1.6.1/mlr3tuning/R/TunerBatchCmaes.R | 23 mlr3tuning-1.6.1/mlr3tuning/R/TunerBatchDesignPoints.R | 4 mlr3tuning-1.6.1/mlr3tuning/R/TunerBatchFromBatchOptimizer.R | 124 +- mlr3tuning-1.6.1/mlr3tuning/R/TunerBatchGenSA.R | 5 mlr3tuning-1.6.1/mlr3tuning/R/TunerBatchGridSearch.R | 10 mlr3tuning-1.6.1/mlr3tuning/R/TunerBatchInternal.R | 38 mlr3tuning-1.6.1/mlr3tuning/R/TunerBatchIrace.R | 34 mlr3tuning-1.6.1/mlr3tuning/R/TunerBatchNLoptr.R | 12 mlr3tuning-1.6.1/mlr3tuning/R/TunerBatchRandomSearch.R | 4 mlr3tuning-1.6.1/mlr3tuning/R/TuningInstanceAsyncMulticrit.R | 81 + mlr3tuning-1.6.1/mlr3tuning/R/TuningInstanceAsyncSingleCrit.R | 58 - mlr3tuning-1.6.1/mlr3tuning/R/TuningInstanceBatchMulticrit.R | 61 - mlr3tuning-1.6.1/mlr3tuning/R/TuningInstanceBatchSingleCrit.R | 78 + mlr3tuning-1.6.1/mlr3tuning/R/TuningInstanceMultiCrit.R | 11 mlr3tuning-1.6.1/mlr3tuning/R/TuningInstanceSingleCrit.R | 12 mlr3tuning-1.6.1/mlr3tuning/R/as_search_space.R | 11 mlr3tuning-1.6.1/mlr3tuning/R/as_tuner.R | 18 mlr3tuning-1.6.1/mlr3tuning/R/assertions.R | 38 mlr3tuning-1.6.1/mlr3tuning/R/auto_tuner.R | 7 mlr3tuning-1.6.1/mlr3tuning/R/bibentries.R | 3 mlr3tuning-1.6.1/mlr3tuning/R/extract_inner_tuning_archives.R | 40 mlr3tuning-1.6.1/mlr3tuning/R/extract_inner_tuning_results.R | 43 mlr3tuning-1.6.1/mlr3tuning/R/helper.R | 24 mlr3tuning-1.6.1/mlr3tuning/R/mlr_callbacks.R | 139 ++- mlr3tuning-1.6.1/mlr3tuning/R/mlr_tuners.R | 36 mlr3tuning-1.6.1/mlr3tuning/R/sugar.R | 22 mlr3tuning-1.6.1/mlr3tuning/R/tune.R | 42 mlr3tuning-1.6.1/mlr3tuning/R/tune_nested.R | 5 mlr3tuning-1.6.1/mlr3tuning/R/zzz.R | 24 mlr3tuning-1.6.1/mlr3tuning/README.md | 17 mlr3tuning-1.6.1/mlr3tuning/build/partial.rdb |binary mlr3tuning-1.6.1/mlr3tuning/build/vignette.rds |binary mlr3tuning-1.6.1/mlr3tuning/inst/CITATION | 4 mlr3tuning-1.6.1/mlr3tuning/inst/testthat/helper_expectations.R | 9 mlr3tuning-1.6.1/mlr3tuning/inst/testthat/helper_misc.R | 29 mlr3tuning-1.6.1/mlr3tuning/inst/testthat/helper_tuner.R | 9 mlr3tuning-1.6.1/mlr3tuning/man/ArchiveAsyncTuning.Rd | 331 +++---- mlr3tuning-1.6.1/mlr3tuning/man/ArchiveAsyncTuningFrozen.Rd | 303 +++--- mlr3tuning-1.6.1/mlr3tuning/man/ArchiveBatchTuning.Rd | 319 +++---- mlr3tuning-1.6.1/mlr3tuning/man/AutoTuner.Rd | 447 +++++----- mlr3tuning-1.6.1/mlr3tuning/man/CallbackAsyncTuning.Rd | 75 - mlr3tuning-1.6.1/mlr3tuning/man/CallbackBatchTuning.Rd | 75 - mlr3tuning-1.6.1/mlr3tuning/man/ContextAsyncTuning.Rd | 60 - mlr3tuning-1.6.1/mlr3tuning/man/ContextBatchTuning.Rd | 62 - mlr3tuning-1.6.1/mlr3tuning/man/ObjectiveTuning.Rd | 146 +-- mlr3tuning-1.6.1/mlr3tuning/man/ObjectiveTuningAsync.Rd | 57 - mlr3tuning-1.6.1/mlr3tuning/man/ObjectiveTuningBatch.Rd | 135 +-- mlr3tuning-1.6.1/mlr3tuning/man/Tuner.Rd | 219 ++-- mlr3tuning-1.6.1/mlr3tuning/man/TunerAsync.Rd | 110 +- mlr3tuning-1.6.1/mlr3tuning/man/TunerAsyncFromOptimizerAsync.Rd | 131 +- mlr3tuning-1.6.1/mlr3tuning/man/TunerBatch.Rd | 184 ++-- mlr3tuning-1.6.1/mlr3tuning/man/TunerBatchFromOptimizerBatch.Rd | 130 +- mlr3tuning-1.6.1/mlr3tuning/man/TuningInstanceAsyncMultiCrit.Rd | 223 ++-- mlr3tuning-1.6.1/mlr3tuning/man/TuningInstanceAsyncSingleCrit.Rd | 225 ++--- mlr3tuning-1.6.1/mlr3tuning/man/TuningInstanceBatchMultiCrit.Rd | 227 ++--- mlr3tuning-1.6.1/mlr3tuning/man/TuningInstanceBatchSingleCrit.Rd | 230 ++--- mlr3tuning-1.6.1/mlr3tuning/man/TuningInstanceMultiCrit.Rd | 124 +- mlr3tuning-1.6.1/mlr3tuning/man/TuningInstanceSingleCrit.Rd | 124 +- mlr3tuning-1.6.1/mlr3tuning/man/auto_tuner.Rd | 61 - mlr3tuning-1.6.1/mlr3tuning/man/callback_async_tuning.Rd | 10 mlr3tuning-1.6.1/mlr3tuning/man/callback_batch_tuning.Rd | 11 mlr3tuning-1.6.1/mlr3tuning/man/extract_inner_tuning_archives.Rd | 3 mlr3tuning-1.6.1/mlr3tuning/man/extract_inner_tuning_results.Rd | 3 mlr3tuning-1.6.1/mlr3tuning/man/figures/logo.png |binary mlr3tuning-1.6.1/mlr3tuning/man/mlr3tuning-package.Rd | 1 mlr3tuning-1.6.1/mlr3tuning/man/mlr3tuning.async_freeze_archive.Rd | 3 mlr3tuning-1.6.1/mlr3tuning/man/mlr3tuning.async_mlflow.Rd | 6 mlr3tuning-1.6.1/mlr3tuning/man/mlr3tuning.backup.Rd | 4 mlr3tuning-1.6.1/mlr3tuning/man/mlr3tuning.measures.Rd | 5 mlr3tuning-1.6.1/mlr3tuning/man/mlr3tuning.one_se_rule.Rd | 10 mlr3tuning-1.6.1/mlr3tuning/man/mlr_tuners.Rd | 7 mlr3tuning-1.6.1/mlr3tuning/man/mlr_tuners_async_design_points.Rd | 68 - mlr3tuning-1.6.1/mlr3tuning/man/mlr_tuners_async_grid_search.Rd | 70 - mlr3tuning-1.6.1/mlr3tuning/man/mlr_tuners_async_random_search.Rd | 68 - mlr3tuning-1.6.1/mlr3tuning/man/mlr_tuners_cmaes.Rd | 102 +- mlr3tuning-1.6.1/mlr3tuning/man/mlr_tuners_design_points.Rd | 95 +- mlr3tuning-1.6.1/mlr3tuning/man/mlr_tuners_gensa.Rd | 108 +- mlr3tuning-1.6.1/mlr3tuning/man/mlr_tuners_grid_search.Rd | 101 +- mlr3tuning-1.6.1/mlr3tuning/man/mlr_tuners_internal.Rd | 106 +- mlr3tuning-1.6.1/mlr3tuning/man/mlr_tuners_irace.Rd | 135 +-- mlr3tuning-1.6.1/mlr3tuning/man/mlr_tuners_nloptr.Rd | 106 +- mlr3tuning-1.6.1/mlr3tuning/man/mlr_tuners_random_search.Rd | 95 +- mlr3tuning-1.6.1/mlr3tuning/man/reexports.Rd | 4 mlr3tuning-1.6.1/mlr3tuning/man/ti.Rd | 34 mlr3tuning-1.6.1/mlr3tuning/man/ti_async.Rd | 34 mlr3tuning-1.6.1/mlr3tuning/man/tune.Rd | 59 - mlr3tuning-1.6.1/mlr3tuning/man/tune_nested.Rd | 13 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/_snaps/Tuner.md | 2 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/helper.R | 17 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/setup.R | 3 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_ArchiveAsyncTuning.R | 289 +++++- mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_ArchiveAsyncTuningFrozen.R | 61 + mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_ArchiveBatchTuning.R | 226 ++++- mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_AutoTuner.R | 427 +++++++-- mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_CallbackAsyncTuning.R | 369 +++----- mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_CallbackBatchTuning.R | 312 +++--- mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_ObjectiveTuningAsync.R | 8 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_ObjectiveTuningBatch.R | 26 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_Tuner.R | 217 +++- mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_TunerAsyncDesignPoints.R | 8 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_TunerAsyncGridSearch.R | 8 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_TunerAsyncRandomSearch.R | 8 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_TunerBatchCmaes.R | 5 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_TunerBatchFromOptimizerBatch.R | 2 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_TunerBatchGenSA.R | 20 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_TunerBatchGridSearch.R | 8 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_TunerBatchIrace.R | 60 + mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_TunerBatchRandomSearch.R | 1 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_TunerInternal.R | 6 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_TuningInstanceAsyncMultiCrit.R | 105 +- mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_TuningInstanceAsyncSingleCrit.R | 115 +- mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_TuningInstanceBatchMultiCrit.R | 114 +- mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_TuningInstanceBatchSingleCrit.R | 227 +++-- mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_as_search_space.R | 8 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_as_tuner.R |only mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_auto_tuner.R | 40 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_error_handling.R | 34 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_extract_inner_tuning_archives.R | 216 ++++ mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_extract_inner_tuning_results.R | 179 +++- mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_lgr.R | 25 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_mlr_callbacks.R | 277 ++++-- mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_ti.R | 14 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_ti_async.R | 14 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_trafos.R | 26 mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_tune.R | 55 + mlr3tuning-1.6.1/mlr3tuning/tests/testthat/test_tune_nested.R | 11 148 files changed, 6824 insertions(+), 4510 deletions(-)
Title: Automated Data Quality Checks for Recurring Dataset Deliveries
Description: Automates quality verification of recurring external dataset deliveries.
For each new file arrival, it runs single-snapshot quality checks, compares
the file to the previous delivery, writes a self-contained 'HTML' report, and
records summary statistics in a local 'SQLite' database for long-term trend
tracking. Supports 'CSV' and fixed-width formats. Custom organisation-specific
checks can be supplied as plain R files.
Author: Mick Mioduszewski [aut, cre]
Maintainer: Mick Mioduszewski <mick@mioduszewski.net>
Diff between dqcheckr versions 0.2.5 dated 2026-07-18 and 0.3.0 dated 2026-07-25
DESCRIPTION | 10 - MD5 | 88 ++++++--- NAMESPACE | 6 NEWS.md | 312 +++++++++++++++++++++++++++++++++++ R/checks_custom.R | 21 ++ R/checks_generic.R | 34 +++ R/compare.R | 20 +- R/drift.R | 213 ++++++++++++++++++++--- R/generate.R |only R/ingest.R | 25 ++ R/run_check.R | 49 ++++- R/snapshot.R | 97 ++++++++++ R/sniff.R |only R/utils.R | 204 ++++++++++++++++++++-- R/validate.R |only R/vocabulary.R |only build/vignette.rds |binary inst/doc/dqcheckr.Rmd | 12 + inst/doc/dqcheckr.html | 14 + inst/doc/specification.R | 2 inst/doc/specification.Rmd | 19 ++ inst/doc/specification.html | 103 ++++++++++- inst/doc/workflow.R |only inst/doc/workflow.Rmd |only inst/doc/workflow.html |only inst/templates/drift_report.qmd | 36 ++++ man/check_numeric_stats.Rd | 5 man/dq_result.Rd | 4 man/generate_dataset_config.Rd |only man/generate_global_config.Rd |only man/infer_col_type.Rd | 7 man/list_runs.Rd |only man/print.dqcheckr_validation.Rd |only man/run_dq_check.Rd | 19 +- man/sniff_dataset.Rd |only man/validate_config.Rd |only tests/testthat/test-checks-custom.R | 64 +++++++ tests/testthat/test-checks.R | 65 +++++++ tests/testthat/test-col-threshold.R | 93 ++++++++++ tests/testthat/test-compare.R | 43 ++++ tests/testthat/test-drift.R | 308 ++++++++++++++++++++++++++++++++++ tests/testthat/test-encoding.R | 59 +++--- tests/testthat/test-generate.R |only tests/testthat/test-ingest.R | 40 ++-- tests/testthat/test-integration.R | 14 - tests/testthat/test-list-runs.R |only tests/testthat/test-run-validation.R |only tests/testthat/test-snapshot.R | 46 +++++ tests/testthat/test-sniff.R |only tests/testthat/test-utils.R | 75 +++++++- tests/testthat/test-validate.R |only tests/testthat/test-vocabulary.R |only vignettes/dqcheckr.Rmd | 12 + vignettes/specification.Rmd | 19 ++ vignettes/workflow.Rmd |only 55 files changed, 1915 insertions(+), 223 deletions(-)
Title: Builds the 'TinyCC' Command-Line Interface and Library for 'C'
Scripting in 'R'
Description: Builds the 'TinyCC' (Tiny 'C' Compiler) command-line interface
and library for package use in 'R'. The package compiles 'TinyCC' from source and
provides R functions to interact with the compiler. 'TinyCC' can be
used for header preprocessing, just-in-time compilation of 'C' code in
'R', and lightweight 'C' scripting workflows.
Author: Sounkou Mahamane Toure [aut, cre],
Mike Cheng [cph] ,
Adam Dunkels [ctb] ,
Swedish Institute of Computer Science [cph] ,
Fabrice Bellard and TinyCC authors [cph]
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>
Diff between Rtinycc versions 0.1.12 dated 2026-07-19 and 0.1.15 dated 2026-07-25
Rtinycc-0.1.12/Rtinycc/src/tinycc-e273cf4.tar.gz |only Rtinycc-0.1.15/Rtinycc/DESCRIPTION | 6 Rtinycc-0.1.15/Rtinycc/MD5 | 32 Rtinycc-0.1.15/Rtinycc/NEWS.md | 15 Rtinycc-0.1.15/Rtinycc/R/ffi.R | 3 Rtinycc-0.1.15/Rtinycc/R/knitr_engine.R | 2 Rtinycc-0.1.15/Rtinycc/README.md | 498 +++++++++- Rtinycc-0.1.15/Rtinycc/TODO | 90 + Rtinycc-0.1.15/Rtinycc/configure | 85 + Rtinycc-0.1.15/Rtinycc/inst/LICENSE.note | 6 Rtinycc-0.1.15/Rtinycc/inst/doc/compilation-and-call-overhead.html | 20 Rtinycc-0.1.15/Rtinycc/inst/doc/ffi-helpers.html | 8 Rtinycc-0.1.15/Rtinycc/inst/doc/getting-started.html | 12 Rtinycc-0.1.15/Rtinycc/inst/tinytest/test_libtcc.R | 28 Rtinycc-0.1.15/Rtinycc/man/figures/README-io_uring-demo-1.png |binary Rtinycc-0.1.15/Rtinycc/src/tinycc-199f07b.tar.gz |only Rtinycc-0.1.15/Rtinycc/tools/run_tcc_minimal_test.sh | 9 Rtinycc-0.1.15/Rtinycc/tools/vendortinycc.R | 2 18 files changed, 726 insertions(+), 90 deletions(-)
Title: Tools for Developing R Packages Interfacing with 'Stan'
Description: Provides various tools for developers of R packages interfacing
with 'Stan' <https://mc-stan.org>, including functions to set up the required
package structure, S3 generics and default methods to unify function naming
across 'Stan'-based R packages, and vignettes with recommendations for
developers.
Author: Jonah Gabry [aut],
Ben Goodrich [aut],
Martin Lysy [aut],
Andrew Johnson [aut, cre],
Hamada S. Badr [ctb],
Marco Colombo [ctb],
Stefan Siegert [ctb],
Visruth Srimath Kandali [ctb],
Trustees of Columbia University [cph]
Maintainer: Andrew Johnson <andrew.johnson@arjohnsonau.com>
Diff between rstantools versions 2.6.0 dated 2026-01-10 and 2.7.0 dated 2026-07-25
DESCRIPTION | 32 ++- MD5 | 24 +- NEWS.md | 7 R/rstan_config.R | 64 +++++++ R/stanc_exceptions.R |only build/partial.rdb |binary build/vignette.rds |binary inst/doc/developer-guidelines.html | 2 inst/doc/minimal-rstan-package.R | 143 ++++++++-------- inst/doc/minimal-rstan-package.Rmd | 21 +- inst/doc/minimal-rstan-package.html | 303 ++++++------------------------------ inst/stanc.2.32.js |only man/rstantools-package.Rd | 2 vignettes/minimal-rstan-package.Rmd | 21 +- 14 files changed, 242 insertions(+), 377 deletions(-)
Title: Tools for Managing Classes on GitHub
Description: Interface for the GitHub API that enables efficient
management of courses on GitHub. It has a functionality for
managing organizations, teams, repositories, and users on GitHub
and helps automate most of the tedious and repetitive tasks
around creating and distributing assignments.
Author: Colin Rundel [aut, cre],
Mine Cetinkaya-Rundel [aut],
Therese Anders [ctb]
Maintainer: Colin Rundel <rundel@gmail.com>
Diff between ghclass versions 0.4.0 dated 2026-05-07 and 0.4.1 dated 2026-07-25
ghclass-0.4.0/ghclass/R/branch_protect.R |only ghclass-0.4.1/ghclass/DESCRIPTION | 19 - ghclass-0.4.1/ghclass/MD5 | 144 +++++------ ghclass-0.4.1/ghclass/NAMESPACE | 6 ghclass-0.4.1/ghclass/NEWS.md | 28 ++ ghclass-0.4.1/ghclass/R/action_artifacts.R | 4 ghclass-0.4.1/ghclass/R/action_artifacts_download.R | 10 ghclass-0.4.1/ghclass/R/action_badge.R | 11 ghclass-0.4.1/ghclass/R/action_run_logs.R | 1 ghclass-0.4.1/ghclass/R/action_runs.R | 2 ghclass-0.4.1/ghclass/R/action_runtime.R | 3 ghclass-0.4.1/ghclass/R/action_workflows.R | 2 ghclass-0.4.1/ghclass/R/branch.R | 6 ghclass-0.4.1/ghclass/R/github_api_limit.R | 57 ++++ ghclass-0.4.1/ghclass/R/github_token.R | 41 +-- ghclass-0.4.1/ghclass/R/github_whoami.R | 11 ghclass-0.4.1/ghclass/R/issue_close.R | 3 ghclass-0.4.1/ghclass/R/local_repo_anonymize.R |only ghclass-0.4.1/ghclass/R/local_repo_clone.R | 10 ghclass-0.4.1/ghclass/R/local_repo_pull.R | 4 ghclass-0.4.1/ghclass/R/local_repo_push.R | 17 - ghclass-0.4.1/ghclass/R/local_repo_rename.R | 21 - ghclass-0.4.1/ghclass/R/org.R | 5 ghclass-0.4.1/ghclass/R/org_admins.R | 19 - ghclass-0.4.1/ghclass/R/org_create_assignment.R | 12 ghclass-0.4.1/ghclass/R/org_invite.R | 2 ghclass-0.4.1/ghclass/R/org_members.R | 6 ghclass-0.4.1/ghclass/R/org_pending.R | 1 ghclass-0.4.1/ghclass/R/org_repo_forking.R | 4 ghclass-0.4.1/ghclass/R/org_repo_search.R | 4 ghclass-0.4.1/ghclass/R/org_repo_stats.R | 13 ghclass-0.4.1/ghclass/R/org_repos.R | 15 - ghclass-0.4.1/ghclass/R/org_sitrep.R | 5 ghclass-0.4.1/ghclass/R/org_teams_v4.R | 5 ghclass-0.4.1/ghclass/R/org_workflow_permissions.R | 2 ghclass-0.4.1/ghclass/R/repo.R | 5 ghclass-0.4.1/ghclass/R/repo_collaborators.R | 1 ghclass-0.4.1/ghclass/R/repo_issues.R | 13 ghclass-0.4.1/ghclass/R/repo_modify_file.R | 2 ghclass-0.4.1/ghclass/R/repo_n_commits.R | 15 - ghclass-0.4.1/ghclass/R/repo_prs.R | 16 - ghclass-0.4.1/ghclass/R/repo_remove_team.R | 2 ghclass-0.4.1/ghclass/R/repo_style.R | 5 ghclass-0.4.1/ghclass/R/team.R | 4 ghclass-0.4.1/ghclass/R/team_invite.R | 2 ghclass-0.4.1/ghclass/R/team_members.R | 36 +- ghclass-0.4.1/ghclass/R/team_pending.R | 44 +-- ghclass-0.4.1/ghclass/R/team_repos.R | 36 +- ghclass-0.4.1/ghclass/R/team_roster.R |only ghclass-0.4.1/ghclass/R/user_repos.R | 5 ghclass-0.4.1/ghclass/R/util_args.R | 18 - ghclass-0.4.1/ghclass/R/util_general.R | 9 ghclass-0.4.1/ghclass/R/util_github.R | 70 +++-- ghclass-0.4.1/ghclass/R/util_github_v4.R | 84 +++++- ghclass-0.4.1/ghclass/R/util_local_repo.R | 2 ghclass-0.4.1/ghclass/R/util_repo.R | 35 -- ghclass-0.4.1/ghclass/R/util_safely.R | 20 - ghclass-0.4.1/ghclass/R/util_suggests.R | 26 - ghclass-0.4.1/ghclass/R/util_team.R | 9 ghclass-0.4.1/ghclass/README.md | 23 - ghclass-0.4.1/ghclass/man/action_badge.Rd | 12 ghclass-0.4.1/ghclass/man/branch.Rd | 2 ghclass-0.4.1/ghclass/man/figures/lifecycle-experimental.svg |only ghclass-0.4.1/ghclass/man/ghclass-internal.Rd | 4 ghclass-0.4.1/ghclass/man/github_api_limit.Rd | 31 ++ ghclass-0.4.1/ghclass/man/local_repo_anonymize.Rd |only ghclass-0.4.1/ghclass/man/local_repo_rename.Rd | 13 ghclass-0.4.1/ghclass/man/org_details.Rd | 5 ghclass-0.4.1/ghclass/man/repo_details.Rd | 2 ghclass-0.4.1/ghclass/man/repo_file.Rd | 19 - ghclass-0.4.1/ghclass/man/repo_style.Rd | 6 ghclass-0.4.1/ghclass/man/repo_user.Rd | 2 ghclass-0.4.1/ghclass/man/team.Rd | 2 ghclass-0.4.1/ghclass/man/team_members.Rd | 2 ghclass-0.4.1/ghclass/man/team_roster.Rd |only ghclass-0.4.1/ghclass/tests |only 76 files changed, 671 insertions(+), 404 deletions(-)
Title: Parallel Programming Tools for 'Rcpp'
Description: High level functions for parallel programming with 'Rcpp'.
For example, the 'parallelFor()' function can be used to convert the work of
a standard serial "for" loop into a parallel one and the 'parallelReduce()'
function can be used for accumulating aggregate or other values.
Author: Kevin Ushey [aut, cre] ,
JJ Allaire [aut],
Romain Francois [aut, cph],
Gregory Vandenbrouck [aut],
Marcus Geelnard [aut, cph] ,
Hamada S. Badr [ctb] ,
Dirk Eddelbuettel [aut] ,
Intel [aut, cph] ,
UXL Foundation [aut, cph] ,
Microsoft [cph],
Posit, PB [...truncated...]
Maintainer: Kevin Ushey <kevin@rstudio.com>
Diff between RcppParallel versions 6.0.0 dated 2026-07-23 and 6.1.0 dated 2026-07-25
RcppParallel-6.0.0/RcppParallel/inst/tests/runit.distance.R |only RcppParallel-6.0.0/RcppParallel/inst/tests/runit.innerproduct.R |only RcppParallel-6.0.0/RcppParallel/inst/tests/runit.sum.R |only RcppParallel-6.0.0/RcppParallel/inst/tests/runit.transform.R |only RcppParallel-6.0.0/RcppParallel/inst/tests/runit.truefalse_macros.R |only RcppParallel-6.0.0/RcppParallel/tests/doRUnit.R |only RcppParallel-6.1.0/RcppParallel/DESCRIPTION | 10 RcppParallel-6.1.0/RcppParallel/MD5 | 43 - RcppParallel-6.1.0/RcppParallel/NAMESPACE | 1 RcppParallel-6.1.0/RcppParallel/NEWS.md | 127 +++- RcppParallel-6.1.0/RcppParallel/R/fork.R |only RcppParallel-6.1.0/RcppParallel/R/tbb.R | 17 RcppParallel-6.1.0/RcppParallel/R/test.R |only RcppParallel-6.1.0/RcppParallel/R/utils.R | 17 RcppParallel-6.1.0/RcppParallel/R/zzz.R | 34 + RcppParallel-6.1.0/RcppParallel/inst/include/RcppParallel.h | 6 RcppParallel-6.1.0/RcppParallel/inst/include/RcppParallel/Fork.h |only RcppParallel-6.1.0/RcppParallel/man/isProcessForkedChild.Rd |only RcppParallel-6.1.0/RcppParallel/src/init.cpp | 37 + RcppParallel-6.1.0/RcppParallel/src/install.libs.R | 263 +++++++++- RcppParallel-6.1.0/RcppParallel/src/tbb/include/oneapi/tbb/detail/_machine.h | 12 RcppParallel-6.1.0/RcppParallel/tests/test-arch-system-file.R |only RcppParallel-6.1.0/RcppParallel/tests/test-distance.R |only RcppParallel-6.1.0/RcppParallel/tests/test-fork.R |only RcppParallel-6.1.0/RcppParallel/tests/test-innerproduct.R |only RcppParallel-6.1.0/RcppParallel/tests/test-install-libs.R |only RcppParallel-6.1.0/RcppParallel/tests/test-scalable-allocator.R |only RcppParallel-6.1.0/RcppParallel/tests/test-sum.R |only RcppParallel-6.1.0/RcppParallel/tests/test-transform.R |only RcppParallel-6.1.0/RcppParallel/tests/test-truefalse-macros.R |only RcppParallel-6.1.0/RcppParallel/tools/config/cleanup.R | 9 RcppParallel-6.1.0/RcppParallel/tools/config/configure.R | 48 + 32 files changed, 532 insertions(+), 92 deletions(-)
Title: Generalized L-Moments Estimation for Extreme Value Distributions
Description: Provides generalized L-moments estimation methods for the
generalized extreme value ('GEV') distribution. Implements both stationary
'GEV' and non-stationary 'GEV11' models where location and scale parameters
vary with time. Includes various penalty functions (Martins-Stedinger,
Park, Cannon, Coles-Dixon) for shape parameter regularization.
Also provides model averaging estimation ('ma.gev') that combines MLE and
L-moment methods with multiple weighting schemes for robust high quantile
estimation. The 'GLME' methodology is described in Shin et al. (2025a)
<doi:10.48550/arXiv.2512.20385>. The non-stationary L-moment method
is based on Shin et al. (2025b) <doi:10.1007/s42952-025-00325-3>.
The model averaging method is described in Shin et al. (2026)
<doi:10.1007/s00477-025-03167-x>.
See also Hosking (1990) <doi:10.1111/j.2517-6161.1990.tb01775.x> for
L-moments theory and Martins and Stedinger (2000)
<doi:10.1029/1999WR900330> for penalized likelihood methods [...truncated...]
Author: Yonggwan Shin [aut, cre] ,
Seokkap Ko [aut, ctb] ,
Jihong Park [ctb] ,
Yire Shin [aut, dtc] ,
Jeong-Soo Park [aut, ths]
Maintainer: Yonggwan Shin <syg.stat@etri.re.kr>
Diff between GLmom versions 2.0.0 dated 2026-07-05 and 2.0.1 dated 2026-07-25
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 19 +++++++++++++++++++ R/glme.gev.R | 2 +- R/glme.gev11.R | 2 +- R/penalty.R | 6 +++--- build/partial.rdb |binary 7 files changed, 33 insertions(+), 14 deletions(-)
Title: Certified Partial Eigenvalue and Singular Value Computation
Description: Computes the top-k singular triplets or eigenpairs of large
sparse and structured matrices: the computation behind principal component
analysis on big sparse data, spectral embeddings, and low-rank
approximation. Every result carries a numerical certificate with
residuals, a backward-error bound, orthogonality loss, and a pass/fail
flag, and bounds that can only be estimated are reported as such rather
than passed. Centered, scaled, and composed operators are solved through
native 'C++' kernels without forming dense matrices. Drop-in replacements
for the 'RSpectra' interface are included.
Author: Bradley Buchsbaum [aut, cre, cph]
Maintainer: Bradley Buchsbaum <brad.buchsbaum@gmail.com>
Diff between eigencore versions 1.0.1 dated 2026-07-24 and 1.0.2 dated 2026-07-25
DESCRIPTION | 6 ++-- MD5 | 15 ++++++----- NEWS.md | 11 ++++++++ inst/benchmarks/bench-readme.R | 4 ++- inst/doc/benchmarks.R | 15 +++++++++++ inst/doc/benchmarks.Rmd | 15 +++++++++++ inst/doc/benchmarks.html | 38 +++++++++++++++--------------- tests/testthat/test-profmem-portability.R |only vignettes/benchmarks.Rmd | 15 +++++++++++ 9 files changed, 86 insertions(+), 33 deletions(-)
Title: Conditional Inference Trees with Stacked Multiple Imputation
Description: Implements the stacked-imputation workflow for conditional
inference trees ('ctree') described in Sherlock et al. (2026)
<doi:10.1080/00273171.2026.2661244>. When data contain missing values,
multiply imputed datasets (e.g., from 'mice') are stacked vertically
and a single 'ctree' is fit on the combined data. To correct for the
artificially inflated sample size introduced by stacking, each
node-level test statistic is divided by the number of imputations M
and its p-value recomputed before nodes are pruned (the Stack/M
correction), producing a conservative but interpretable single tree
that incorporates imputation uncertainty without requiring pooling of
structurally different trees. Also exports stack_imputations(),
rescale_statistic() and prune_stackM() as standalone utilities. The
underlying 'ctree' algorithm is provided by 'partykit'
(Hothorn & Zeileis, 2015; Hothorn, Hornik & Zeileis, 2006
<doi:10.1198/106186006X133933>).
Author: Phillip Sherlock [aut, cre]
Maintainer: Phillip Sherlock <phillip.sherlock@ufl.edu>
Diff between ctreeMI versions 0.2.0 dated 2026-07-23 and 0.3.0 dated 2026-07-25
DESCRIPTION | 19 ++-- MD5 | 20 ++--- NEWS.md | 48 ++++++++++++ R/ctree_stacked.R | 125 ++++++++++++++++++++++---------- R/methods.R | 18 +++- R/node_table.R | 20 +++-- R/stackM.R |only R/utils.R | 54 ++++++++++--- build/partial.rdb |binary tests/testthat/test-ctreeMI.R | 15 ++- tests/testthat/test-node-table.R | 3 tests/testthat/test-stackM-correction.R |only 12 files changed, 235 insertions(+), 87 deletions(-)
Title: Sparse Learning with Convex and Concave Penalties
Description: Fast regularization paths for sparse Gaussian, binomial, Poisson,
square-root-lasso, and multinomial models with lasso, smoothly clipped
absolute deviation, or minimax concave penalties. Computation uses
pathwise coordinate optimization, active-set updates, warm starts,
screening rules, Proximal Newton iterations, quadratic majorization, and
adaptive local linear approximation where appropriate. Core solvers are
implemented in C++, and coefficient paths are returned as
Matrix-compatible objects.
Author: Jason Ge [aut],
Xingguo Li [aut],
Haoming Jiang [aut],
Mengdi Wang [aut],
Tong Zhang [aut],
Han Liu [aut],
Tuo Zhao [aut, cre],
Gael Guennebaud [ctb] ,
Benoit Jacob [ctb] ,
Eigen Library Authors [cph]
Maintainer: Tuo Zhao <tourzhao@gatech.edu>
Diff between picasso versions 1.5 dated 2026-03-12 and 2.0.1 dated 2026-07-25
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picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/Fuzzy.h | 6 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/GeneralProduct.h | 30 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/GenericPacketMath.h | 751 + picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/GlobalFunctions.h | 73 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/IO.h | 47 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/IndexedView.h |only picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/Inverse.h | 19 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/Map.h | 14 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/MapBase.h | 13 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/MathFunctions.h | 928 +- picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/MathFunctionsImpl.h | 137 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/Matrix.h | 158 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/MatrixBase.h | 50 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picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/functors/BinaryFunctors.h | 158 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/functors/NullaryFunctors.h | 61 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/functors/StlFunctors.h | 34 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/functors/UnaryFunctors.h | 371 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/GeneralBlockPanelKernel.h | 1664 ++- picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrix.h | 73 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h | 76 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h | 12 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h | 6 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/GeneralMatrixVector.h | 895 - picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/Parallelizer.h | 27 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/SelfadjointMatrixMatrix.h | 83 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h | 24 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/SelfadjointMatrixVector.h | 14 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/SelfadjointProduct.h | 8 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/SelfadjointRank2Update.h | 9 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/TriangularMatrixMatrix.h | 60 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h | 26 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/TriangularSolverMatrix.h | 70 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h | 12 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/products/TriangularSolverVector.h | 23 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/BlasUtil.h | 423 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/ConfigureVectorization.h |only picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/Constants.h | 34 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/DisableStupidWarnings.h | 104 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/ForwardDeclarations.h | 38 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/IndexedViewHelper.h |only picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/IntegralConstant.h |only picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/MKL_support.h | 9 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/Macros.h | 955 +- picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/Memory.h | 264 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/Meta.h | 458 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/ReenableStupidWarnings.h | 12 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/ReshapedHelper.h |only picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/StaticAssert.h | 13 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/SymbolicIndex.h |only picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Core/util/XprHelper.h | 95 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Eigenvalues/ComplexEigenSolver.h | 2 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Eigenvalues/ComplexSchur.h | 11 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Eigenvalues/EigenSolver.h | 4 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h | 2 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Eigenvalues/HessenbergDecomposition.h | 4 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h | 6 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Eigenvalues/RealQZ.h | 15 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Eigenvalues/RealSchur.h | 30 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h | 120 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Eigenvalues/Tridiagonalization.h | 35 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Geometry/AlignedBox.h | 104 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Geometry/AngleAxis.h | 8 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Geometry/EulerAngles.h | 6 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Geometry/Homogeneous.h | 26 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Geometry/Hyperplane.h | 2 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Geometry/OrthoMethods.h | 5 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Geometry/ParametrizedLine.h | 41 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Geometry/Quaternion.h | 84 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Geometry/Rotation2D.h | 6 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Geometry/Scaling.h | 28 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Geometry/Transform.h | 155 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Geometry/Translation.h | 18 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Geometry/Umeyama.h | 2 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Geometry/arch/Geometry_SIMD.h |only picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Householder/BlockHouseholder.h | 11 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Householder/Householder.h | 12 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Householder/HouseholderSequence.h | 173 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h | 30 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h | 30 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h | 30 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h | 88 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h | 111 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h | 90 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h | 22 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h | 20 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/Jacobi/Jacobi.h | 53 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/KLUSupport |only picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/LU/Determinant.h | 54 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/LU/FullPivLU.h | 72 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/LU/InverseImpl.h | 33 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/LU/PartialPivLU.h | 129 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/LU/arch/InverseSize4.h |only picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/OrderingMethods/Amd.h | 24 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/OrderingMethods/Eigen_Colamd.h | 582 - picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/OrderingMethods/Ordering.h | 16 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/PaStiXSupport/PaStiXSupport.h | 2 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/PardisoSupport/PardisoSupport.h | 16 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/QR/ColPivHouseholderQR.h | 61 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/QR/CompleteOrthogonalDecomposition.h | 127 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/QR/FullPivHouseholderQR.h | 81 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/QR/HouseholderQR.h | 71 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h | 28 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SVD/BDCSVD.h | 246 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SVD/JacobiSVD.h | 36 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SVD/SVDBase.h | 107 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SVD/UpperBidiagonalization.h | 6 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCholesky/SimplicialCholesky.h | 26 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h | 49 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/AmbiVector.h | 5 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/CompressedStorage.h | 16 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h | 12 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/SparseAssign.h | 108 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/SparseBlock.h | 82 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/SparseCompressedBase.h | 51 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/SparseCwiseBinaryOp.h | 26 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/SparseCwiseUnaryOp.h | 6 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/SparseDenseProduct.h | 38 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/SparseMatrix.h | 143 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/SparseMatrixBase.h | 17 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/SparseProduct.h | 14 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/SparseRef.h | 14 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/SparseSelfAdjointView.h | 7 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/SparseUtil.h | 8 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/SparseVector.h | 2 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseCore/SparseView.h | 1 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseLU/SparseLU.h | 176 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseLU/SparseLU_Memory.h | 2 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h | 78 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseLU/SparseLU_column_dfs.h | 4 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseLU/SparseLU_gemm_kernel.h | 2 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseLU/SparseLU_panel_bmod.h | 2 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SparseQR/SparseQR.h | 25 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/StlSupport/StdDeque.h | 14 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/StlSupport/StdList.h | 4 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/StlSupport/StdVector.h | 4 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/SuperLUSupport/SuperLUSupport.h | 14 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/UmfPackSupport/UmfPackSupport.h | 214 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/misc/blas.h | 4 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/misc/lapacke.h | 9 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/plugins/ArrayCwiseBinaryOps.h | 30 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/plugins/ArrayCwiseUnaryOps.h | 166 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/plugins/BlockMethods.h | 926 + picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/plugins/CommonCwiseUnaryOps.h | 14 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/plugins/IndexedViewMethods.h |only picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/plugins/MatrixCwiseBinaryOps.h | 8 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/plugins/MatrixCwiseUnaryOps.h | 10 picasso-2.0.1/picasso/src/include/eigen3/Eigen/src/plugins/ReshapedMethods.h |only picasso-2.0.1/picasso/src/include/picasso/actgd.hpp | 28 picasso-2.0.1/picasso/src/include/picasso/actnewton.hpp | 70 picasso-2.0.1/picasso/src/include/picasso/c_api.hpp | 286 picasso-2.0.1/picasso/src/include/picasso/multinomial_actnewton.hpp |only picasso-2.0.1/picasso/src/include/picasso/multinomial_lla.hpp |only picasso-2.0.1/picasso/src/include/picasso/multinomial_objective.hpp |only picasso-2.0.1/picasso/src/include/picasso/objective.hpp | 387 picasso-2.0.1/picasso/src/include/picasso/solver_params.hpp | 10 picasso-2.0.1/picasso/src/internal |only picasso-2.0.1/picasso/src/objective/gaussian_cov_update.cpp | 154 picasso-2.0.1/picasso/src/objective/gaussian_naive_update.cpp | 77 picasso-2.0.1/picasso/src/objective/glm.cpp | 448 picasso-2.0.1/picasso/src/objective/multinomial_objective.cpp |only picasso-2.0.1/picasso/src/objective/sqrtmse.cpp | 161 picasso-2.0.1/picasso/src/picasso-all0.cpp | 4 picasso-2.0.1/picasso/src/picasso_R.cpp | 588 + picasso-2.0.1/picasso/src/solver/actgd.cpp | 322 picasso-2.0.1/picasso/src/solver/actnewton.cpp | 1000 +- picasso-2.0.1/picasso/src/solver/multinomial_actnewton.cpp |only picasso-2.0.1/picasso/src/solver/multinomial_lla.cpp |only picasso-2.0.1/picasso/src/solver/solver_params.cpp | 17 picasso-2.0.1/picasso/tests |only picasso-2.0.1/picasso/vignettes/vignette.Rnw | 174 336 files changed, 30978 insertions(+), 11987 deletions(-)
Title: Optimal Pairing and Matching via Linear Assignment
Description: Solves optimal pairing and matching problems using linear assignment
algorithms. Provides implementations of the Hungarian method (Kuhn 1955)
<doi:10.1002/nav.3800020109>, Jonker-Volgenant shortest path algorithm
(Jonker and Volgenant 1987) <doi:10.1007/BF02278710>, Auction algorithm
(Bertsekas 1988) <doi:10.1007/BF02186476>, cost-scaling
(Goldberg and Kennedy 1995) <doi:10.1007/BF01585996>, scaling algorithms
(Gabow and Tarjan 1989) <doi:10.1137/0218069>, push-relabel (Goldberg and
Tarjan 1988) <doi:10.1145/48014.61051>, and Sinkhorn entropy-regularized
transport (Cuturi 2013) <doi:10.48550/arxiv.1306.0895>. Designed for
matching plots, sites, samples, or any pairwise optimization problem.
Supports rectangular matrices, forbidden assignments, data frame inputs,
batch solving, k-best solutions, and pixel-level image morphing for
visualization. Includes automatic preprocessing with variable health
checks, multiple scaling methods (standardized, [...truncated...]
Author: Gilles Colling [aut, cre, cph]
Maintainer: Gilles Colling <gilles.colling051@gmail.com>
Diff between couplr versions 1.5.0 dated 2026-07-19 and 1.5.3 dated 2026-07-25
DESCRIPTION | 20 MD5 | 171 +- NAMESPACE | 3 NEWS.md | 104 + R/RcppExports.R | 8 R/animate.R | 6 R/lap_solve.R | 116 + R/lap_solve_batch.R | 22 R/matching_constraints.R | 36 R/matching_core.R | 117 + R/matching_distance.R | 41 R/matching_distance_cache.R | 95 + R/matching_full.R | 17 R/matching_lazy.R |only R/matching_memory.R |only R/matching_messages.R | 10 R/matching_parallel.R | 5 README.md | 6 inst/doc/algorithms.R | 1103 +++++++++--------- inst/doc/algorithms.Rmd | 17 inst/doc/algorithms.html | 97 + inst/doc/comparison.Rmd | 9 inst/doc/comparison.html | 22 inst/doc/getting-started.html | 4 inst/doc/matching-workflows.Rmd | 13 inst/doc/matching-workflows.html | 26 inst/doc/pixel-morphing.html | 4 inst/doc/troubleshooting.R | 17 inst/doc/troubleshooting.Rmd | 52 inst/doc/troubleshooting.html | 287 ++-- man/assignment.Rd | 23 man/build_cost_matrix.Rd | 20 man/compute_distances.Rd | 18 man/dot-assignment_lazy.Rd |only man/dot-blocks_parallel.Rd | 3 man/dot-couples_blocked.Rd | 3 man/dot-couples_single.Rd | 3 man/estimate_dense_matrix_mb.Rd |only man/full_match.Rd | 10 man/get_free_ram_mb.Rd |only man/lazy_cost_spec_inv_cov.Rd |only man/lazy_pair_distances.Rd |only man/match_couples.Rd | 28 man/match_couples_blocked.Rd | 3 man/match_couples_single.Rd | 3 man/new_lazy_cost_spec.Rd |only man/resolve_memory_mode.Rd |only man/transpose_lazy_cost_spec.Rd |only src/Makevars | 6 src/Makevars.win | 6 src/RcppExports.cpp | 40 src/core/lap_cost_source_traits.h |only src/core/lap_cost_view.h |only src/core/lap_lazy_types.h |only src/core/lap_types.h | 49 src/core/lap_utils.cpp | 60 src/core/lap_utils.h | 64 - src/core/lap_utils_rcpp.cpp | 128 +- src/core/lap_utils_rcpp.h | 32 src/rcpp_interface.cpp | 28 src/solvers/greedy_matching.cpp | 12 src/solvers/jv_core.cpp | 31 src/solvers/jv_core.h | 24 src/solvers/network_simplex/solve_network_simplex.cpp | 19 src/solvers/orlin_ahuja/orlin_solve.cpp | 4 src/solvers/solve_auction.cpp | 234 ++- src/solvers/solve_auction.h | 13 src/solvers/solve_auction_lazy_rcpp.cpp |only src/solvers/solve_bottleneck.cpp | 4 src/solvers/solve_bruteforce.cpp | 4 src/solvers/solve_csa.cpp | 15 src/solvers/solve_csflow.cpp | 4 src/solvers/solve_cycle_cancel.cpp | 11 src/solvers/solve_hk01.cpp | 8 src/solvers/solve_hungarian.cpp | 4 src/solvers/solve_jv.cpp | 43 src/solvers/solve_jv.h | 12 src/solvers/solve_jv_duals.cpp | 4 src/solvers/solve_jv_lazy_rcpp.cpp |only src/solvers/solve_lapmod.cpp | 8 src/solvers/solve_munkres.cpp | 39 src/solvers/solve_push_relabel.cpp | 4 src/solvers/solve_ramshaw_tarjan.cpp | 11 src/solvers/solve_sinkhorn.cpp | 4 src/solvers/solve_ssap_bucket.cpp | 106 + src/solvers/solve_ssp.cpp | 11 tests/testthat/test-animate-widget.R |only tests/testthat/test-assignment-lazy.R |only tests/testthat/test-coverage-90-final.R | 5 tests/testthat/test-distance-cache-coverage.R | 2 tests/testthat/test-match-couples-lazy.R |only tests/testthat/test-memory-mode.R |only vignettes/algorithms.Rmd | 17 vignettes/comparison.Rmd | 9 vignettes/matching-workflows.Rmd | 13 vignettes/troubleshooting.Rmd | 52 96 files changed, 2436 insertions(+), 1246 deletions(-)
Title: Bayesian Whole-Genome Regression
Description: Whole-genome regression methods on Bayesian framework fitted via EM
or Gibbs sampling, single step (<doi:10.1534/g3.119.400728>),
univariate and multivariate (<doi:10.1186/s12711-022-00730-w>, <doi:10.1093/genetics/iyae179>),
with optional kernel term and sampling techniques (<doi:10.1186/s12859-017-1582-3>).
Author: Alencar Xavier [aut, cre] ,
William Muir [aut],
David Habier [aut],
Kyle Kocak [aut],
Shizhong Xu [aut],
Katy Rainey [aut]
Maintainer: Alencar Xavier <alenxav@gmail.com>
Diff between bWGR versions 2.2.17 dated 2025-12-11 and 2.2.18 dated 2026-07-25
bWGR-2.2.17/bWGR/src/Rcpp20230423.cpp |only bWGR-2.2.18/bWGR/DESCRIPTION | 8 bWGR-2.2.18/bWGR/MD5 | 8 bWGR-2.2.18/bWGR/man/bWGR.Rd | 4 bWGR-2.2.18/bWGR/src/Rcpp20260726ai.cpp |only bWGR-2.2.18/bWGR/src/RcppExports.cpp | 396 ++++++++++++++++---------------- 6 files changed, 208 insertions(+), 208 deletions(-)
Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library aiming towards
a good balance between speed and ease of use. It provides high-level syntax and
functionality deliberately similar to Matlab. It is useful for algorithm development
directly in C++, or quick conversion of research code into production environments.
It provides efficient classes for vectors, matrices and cubes where dense and sparse
matrices are supported. Integer, floating point and complex numbers are supported.
A sophisticated expression evaluator (based on template meta-programming) automatically
combines several operations to increase speed and efficiency. Dynamic evaluation
automatically chooses optimal code paths based on detected matrix structures.
Matrix decompositions are provided through integration with LAPACK, or one of its
high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can
automatically use 'OpenMP' multi-threading (parallelisation) to speed up
computationally expensive operations [...truncated...]
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
Doug Bates [aut] ,
Binxiang Ni [aut],
Conrad Sanderson [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 15.4.0-1 dated 2026-06-19 and 15.4.2-1 dated 2026-07-25
ChangeLog | 34 +++- DESCRIPTION | 8 - MD5 | 78 ++++----- build/partial.rdb |binary build/vignette.rds |binary configure | 18 +- configure.ac | 2 inst/NEWS.Rd | 19 ++ inst/include/armadillo_bits/Mat_bones.hpp | 6 inst/include/armadillo_bits/Mat_meat.hpp | 60 +++++++ inst/include/armadillo_bits/SpBase_bones.hpp | 2 inst/include/armadillo_bits/SpBase_meat.hpp | 10 - inst/include/armadillo_bits/SpGlue_bones.hpp | 3 inst/include/armadillo_bits/SpGlue_meat.hpp | 3 inst/include/armadillo_bits/SpMat_bones.hpp | 3 inst/include/armadillo_bits/SpMat_meat.hpp | 7 inst/include/armadillo_bits/SpOp_bones.hpp | 3 inst/include/armadillo_bits/SpOp_meat.hpp | 3 inst/include/armadillo_bits/SpSubview_bones.hpp | 3 inst/include/armadillo_bits/SpSubview_col_list_bones.hpp | 2 inst/include/armadillo_bits/SpSubview_col_list_meat.hpp | 11 + inst/include/armadillo_bits/SpSubview_meat.hpp | 3 inst/include/armadillo_bits/arma_version.hpp | 2 inst/include/armadillo_bits/diskio_meat.hpp | 2 inst/include/armadillo_bits/memory.hpp | 10 - inst/include/armadillo_bits/mtSpOp_meat.hpp | 2 inst/include/armadillo_bits/mtSpReduceOp_bones.hpp | 3 inst/include/armadillo_bits/mtSpReduceOp_meat.hpp | 11 + inst/include/armadillo_bits/op_diagmat_bones.hpp | 11 + inst/include/armadillo_bits/op_diagmat_meat.hpp | 106 +++++++++---- inst/include/armadillo_bits/op_diagvec_bones.hpp | 18 ++ inst/include/armadillo_bits/op_diagvec_meat.hpp | 101 ++++++++++-- inst/include/armadillo_bits/op_repelem_bones.hpp | 2 inst/include/armadillo_bits/op_repelem_meat.hpp | 17 ++ inst/include/armadillo_bits/op_vectorise_bones.hpp | 2 inst/include/armadillo_bits/op_vectorise_meat.hpp | 118 +-------------- inst/include/armadillo_bits/spdiagview_bones.hpp | 3 inst/include/armadillo_bits/spdiagview_meat.hpp | 11 + inst/include/armadillo_bits/spop_diagmat_bones.hpp | 7 inst/include/armadillo_bits/spop_diagmat_meat.hpp | 29 +++ 40 files changed, 480 insertions(+), 253 deletions(-)
Title: Polyspherical Kernel Density Estimation
Description: Kernel density estimation on the polysphere, (hyper)sphere, and
circle. Includes functions for density estimation, regression estimation,
ridge estimation, bandwidth selection, kernels, samplers, and homogeneity
tests. Companion package to García-Portugués and Meilán-Vila (2025)
<doi:10.1080/01621459.2025.2521898> and García-Portugués and Meilán-Vila
(2023) <doi:10.1007/978-3-031-32729-2_4>.
Author: Eduardo Garcia-Portugues [aut, cre] ,
Andrea Meilan-Vila [ctb]
Maintainer: Eduardo Garcia-Portugues <edgarcia@est-econ.uc3m.es>
Diff between polykde versions 1.1.7 dated 2025-07-27 and 1.2.0 dated 2026-07-25
polykde-1.1.7/polykde/tests/testthat/tests_grad-hess.R |only polykde-1.2.0/polykde/DESCRIPTION | 20 - polykde-1.2.0/polykde/MD5 | 141 +++---- polykde-1.2.0/polykde/NEWS.md | 17 polykde-1.2.0/polykde/R/RcppExports.R | 174 +++++---- polykde-1.2.0/polykde/R/angles.R | 28 - polykde-1.2.0/polykde/R/bwd.R | 208 +++++++--- polykde-1.2.0/polykde/R/data.R | 25 - polykde-1.2.0/polykde/R/distr.R | 10 polykde-1.2.0/polykde/R/euler.R | 223 ++++++----- polykde-1.2.0/polykde/R/kernels.R | 31 - polykde-1.2.0/polykde/R/kre.R | 42 +- polykde-1.2.0/polykde/R/mise.R | 99 +++-- polykde-1.2.0/polykde/R/polykde-package.R | 6 polykde-1.2.0/polykde/R/samplers.R | 298 ++++++++------- polykde-1.2.0/polykde/R/sreps.R | 48 +- polykde-1.2.0/polykde/R/sysdata.rda |binary polykde-1.2.0/polykde/R/tests.R | 73 ++- polykde-1.2.0/polykde/R/utils.R | 327 ++++++++++++----- polykde-1.2.0/polykde/R/zzz.R | 22 - polykde-1.2.0/polykde/build/partial.rdb |binary polykde-1.2.0/polykde/inst/CITATION | 20 + polykde-1.2.0/polykde/inst/WORDLIST | 3 polykde-1.2.0/polykde/man/angles_to_polysph.Rd | 4 polykde-1.2.0/polykde/man/angles_to_sph.Rd | 10 polykde-1.2.0/polykde/man/angles_to_torus.Rd | 8 polykde-1.2.0/polykde/man/bw_cv_kre_polysph.Rd | 23 - polykde-1.2.0/polykde/man/bw_cv_polysph.Rd | 60 ++- polykde-1.2.0/polykde/man/bw_lcv_min_epa.Rd | 4 polykde-1.2.0/polykde/man/bw_mrot_polysph.Rd | 24 - polykde-1.2.0/polykde/man/bw_rot_polysph.Rd | 35 + polykde-1.2.0/polykde/man/clean_euler_ridge.Rd | 86 ++-- polykde-1.2.0/polykde/man/comp_ind_dj.Rd | 6 polykde-1.2.0/polykde/man/d_mvmf_polysph.Rd | 12 polykde-1.2.0/polykde/man/dist_polysph.Rd | 18 polykde-1.2.0/polykde/man/eff_kern.Rd | 32 + polykde-1.2.0/polykde/man/euler_ridge.Rd | 178 ++++++--- polykde-1.2.0/polykde/man/fib_latt.Rd | 2 polykde-1.2.0/polykde/man/figures |only polykde-1.2.0/polykde/man/grad_hess_kde_polysph.Rd | 36 + polykde-1.2.0/polykde/man/hammer_to_sph.Rd | 2 polykde-1.2.0/polykde/man/hippocampus.Rd | 25 - polykde-1.2.0/polykde/man/hom_test_polysph.Rd | 38 + polykde-1.2.0/polykde/man/index_ridge.Rd | 135 ++++--- polykde-1.2.0/polykde/man/interp_polysph.Rd | 4 polykde-1.2.0/polykde/man/kde_polysph.Rd | 43 +- polykde-1.2.0/polykde/man/kernel.Rd | 21 - polykde-1.2.0/polykde/man/kre_polysph.Rd | 32 - polykde-1.2.0/polykde/man/log_cv_kde_polysph.Rd | 26 - polykde-1.2.0/polykde/man/polykde-package.Rd | 6 polykde-1.2.0/polykde/man/proj_grad_kde_polysph.Rd | 35 + polykde-1.2.0/polykde/man/proj_polysph.Rd | 11 polykde-1.2.0/polykde/man/r_g_kern.Rd | 2 polykde-1.2.0/polykde/man/r_kde_polysph.Rd | 63 +-- polykde-1.2.0/polykde/man/r_kern_polysph.Rd | 113 +++-- polykde-1.2.0/polykde/man/r_mvmf_polysph.Rd | 14 polykde-1.2.0/polykde/man/r_path_s1r.Rd | 145 ++++--- polykde-1.2.0/polykde/man/r_unif_polysph.Rd | 2 polykde-1.2.0/polykde/man/r_vmf_polysph.Rd | 3 polykde-1.2.0/polykde/man/view_srep.Rd | 86 +++- polykde-1.2.0/polykde/src/euler.cpp | 104 +++-- polykde-1.2.0/polykde/src/grad-hess.cpp | 36 + polykde-1.2.0/polykde/src/kde.cpp | 33 + polykde-1.2.0/polykde/src/utils.cpp | 43 +- polykde-1.2.0/polykde/tests/testthat/Rplots.pdf |binary polykde-1.2.0/polykde/tests/testthat/tests_angles.R | 5 polykde-1.2.0/polykde/tests/testthat/tests_bwd.R | 84 +++- polykde-1.2.0/polykde/tests/testthat/tests_distr.R | 22 + polykde-1.2.0/polykde/tests/testthat/tests_grad_hess.R |only polykde-1.2.0/polykde/tests/testthat/tests_kde.R | 5 polykde-1.2.0/polykde/tests/testthat/tests_mise.R | 41 ++ polykde-1.2.0/polykde/tests/testthat/tests_tests.R | 22 + polykde-1.2.0/polykde/tests/testthat/tests_utils.R | 251 ++++++++++--- 73 files changed, 2482 insertions(+), 1323 deletions(-)
Title: Detect Text Reuse and Document Similarity
Description: Tools for measuring similarity among documents and detecting
passages which have been reused. Implements shingled n-gram, skip n-gram,
and other tokenizers; similarity/dissimilarity functions; pairwise
comparisons; minhash and locality sensitive hashing algorithms; and a
version of the Smith-Waterman local alignment algorithm suitable for
natural language.
Author: Lincoln Mullen [aut] ,
Yaoxiang Li [aut, cre]
Maintainer: Yaoxiang Li <liyaoxiang@outlook.com>
Diff between textreuse versions 1.0.1 dated 2026-05-07 and 1.0.2 dated 2026-07-25
DESCRIPTION | 12 ++++----- MD5 | 42 ++++++++++++++++---------------- NEWS.md | 25 +++++++++++++------ R/align_local.R | 2 - R/lsh.R | 8 +++--- R/lsh_candidates.R | 3 +- R/lsh_probability.R | 3 +- R/minhash.R | 2 - R/textreuse-package.r | 4 +-- README.md | 11 +++----- build/vignette.rds |binary inst/doc/textreuse-alignment.html | 4 +-- inst/doc/textreuse-introduction.html | 10 +++---- inst/doc/textreuse-minhash.html | 45 +++++++++++++++++------------------ inst/doc/textreuse-pairwise.html | 4 +-- man/align_local.Rd | 2 - man/lsh.Rd | 2 - man/lsh_probability.Rd | 3 +- man/minhash_generator.Rd | 2 - man/reexports.Rd | 2 - man/textreuse-package.Rd | 9 +++---- tests/testthat/test-lsh.R | 1 22 files changed, 104 insertions(+), 92 deletions(-)
Title: Cumulative Calibration Assessment for Prediction Models
Description: Tools for visualization of, and inference on, the calibration of prediction models on the cumulative domain. This provides a method for evaluating calibration of risk prediction models without having to group the data or use tuning parameters (e.g., loess bandwidth). This package implements the methodology described in Sadatsafavi and Petkau (2024) <doi:10.1002/sim.10138>. The core of the package is cumulcalib(), which takes in vectors of binary responses and predicted risks. The package also implements non-parametric assessment of the calibration of individualized treatment effect (ITE) models using data from a randomized trial, via cumulcalibITE(), as described in Sadatsafavi et al. (2025) <doi:10.48550/arXiv.2512.08140>. The plot() and summary() methods are implemented for the results returned by cumulcalib() and cumulcalibITE().
Author: Mohsen Sadatsafavi [aut, cre]
Maintainer: Mohsen Sadatsafavi <mohsen.sadatsafavi@ubc.ca>
Diff between cumulcalib versions 0.0.1 dated 2024-06-13 and 0.1.0 dated 2026-07-25
cumulcalib-0.0.1/cumulcalib/tests/testthat/test-test.R |only cumulcalib-0.1.0/cumulcalib/DESCRIPTION | 14 cumulcalib-0.1.0/cumulcalib/LICENSE | 4 cumulcalib-0.1.0/cumulcalib/MD5 | 65 cumulcalib-0.1.0/cumulcalib/NAMESPACE | 3 cumulcalib-0.1.0/cumulcalib/NEWS.md | 38 cumulcalib-0.1.0/cumulcalib/R/core.R | 1273 +++++----- cumulcalib-0.1.0/cumulcalib/R/cumulcalib-package.R | 24 cumulcalib-0.1.0/cumulcalib/R/plot.R |only cumulcalib-0.1.0/cumulcalib/README.md | 47 cumulcalib-0.1.0/cumulcalib/build/partial.rdb |binary cumulcalib-0.1.0/cumulcalib/build/vignette.rds |binary cumulcalib-0.1.0/cumulcalib/inst/WORDLIST | 9 cumulcalib-0.1.0/cumulcalib/inst/doc/tutorial.Rmd | 384 +-- cumulcalib-0.1.0/cumulcalib/inst/doc/tutorial.html | 262 -- cumulcalib-0.1.0/cumulcalib/inst/doc/tutorialITE.R |only cumulcalib-0.1.0/cumulcalib/inst/doc/tutorialITE.Rmd |only cumulcalib-0.1.0/cumulcalib/inst/doc/tutorialITE.html |only cumulcalib-0.1.0/cumulcalib/man/cumulcalib-package.Rd | 42 cumulcalib-0.1.0/cumulcalib/man/cumulcalib.Rd | 64 cumulcalib-0.1.0/cumulcalib/man/cumulcalibITE.Rd |only cumulcalib-0.1.0/cumulcalib/man/figures/README-example-1.png |binary cumulcalib-0.1.0/cumulcalib/man/pKolmogorov.Rd | 38 cumulcalib-0.1.0/cumulcalib/man/pMAD_BM.Rd | 38 cumulcalib-0.1.0/cumulcalib/man/pMAD_BM_c.Rd | 62 cumulcalib-0.1.0/cumulcalib/man/plot.cumulcalib.Rd | 109 cumulcalib-0.1.0/cumulcalib/man/print.cumulcalib.Rd |only cumulcalib-0.1.0/cumulcalib/man/print.summary.cumulcalib.Rd |only cumulcalib-0.1.0/cumulcalib/man/qKolmogorov.Rd | 34 cumulcalib-0.1.0/cumulcalib/man/qMAD_BM.Rd | 34 cumulcalib-0.1.0/cumulcalib/man/qMAD_BM_c.Rd | 38 cumulcalib-0.1.0/cumulcalib/man/summary.cumulcalib.Rd | 64 cumulcalib-0.1.0/cumulcalib/tests/testthat.R | 24 cumulcalib-0.1.0/cumulcalib/tests/testthat/test-cumulcalib.R |only cumulcalib-0.1.0/cumulcalib/tests/testthat/test-cumulcalibITE.R |only cumulcalib-0.1.0/cumulcalib/tests/testthat/test-distributions.R |only cumulcalib-0.1.0/cumulcalib/tests/testthat/test-plot.R |only cumulcalib-0.1.0/cumulcalib/tests/testthat/test-print.R |only cumulcalib-0.1.0/cumulcalib/tests/testthat/test-summary.R |only cumulcalib-0.1.0/cumulcalib/vignettes/tutorial.Rmd | 384 +-- cumulcalib-0.1.0/cumulcalib/vignettes/tutorialITE.Rmd |only 41 files changed, 1657 insertions(+), 1397 deletions(-)
Title: Probabilistic Decomposition of Archaeological Palimpsests
Description: Probabilistic framework for the analysis of archaeological
palimpsests based on the Stratigraphic Entanglement Field (SEF).
Integrates spatial proximity, stratigraphic depth, chronological
overlap, and cultural similarity to estimate latent depositional
phases via diagonal Gaussian mixture Expectation-Maximisation (EM).
Provides the Stratigraphic Entanglement Index (SEI), Excavation
Stratigraphic Energy (ESE), and Palimpsest Dissolution Index (PDI)
for quantifying depositional coherence, detecting intrusive finds,
and measuring palimpsest formation. Includes simulation, diagnostics,
phase-count selection, publication-quality plots, and Geographic
Information System (GIS) export via 'sf'. Methods are described in Cocca (2026)
<https://github.com/enzococca/palimpsestr>.
Author: Enzo Cocca [aut, cre]
Maintainer: Enzo Cocca <enzo.ccc@gmail.com>
Diff between palimpsestr versions 0.10.0 dated 2026-04-09 and 0.24.0 dated 2026-07-25
DESCRIPTION | 13 MD5 | 188 +-- NAMESPACE | 14 NEWS.md | 398 ++++++ R/app.R |only R/bootstrap.R | 16 R/chronology.R |only R/cv.R | 50 R/data.R | 43 R/db_connect.R | 452 +++++++ R/diagnostics.R | 27 R/ese.R | 13 R/export_report.R |only R/fit.R | 344 +++++ R/gg_model_plots.R |only R/gg_plots.R | 42 R/harris.R | 37 R/longevity.R |only R/optimize.R | 58 R/recommend.R |only R/sei.R | 23 R/simulate.R | 8 R/utils.R | 401 ++++++ README.md | 13 build/partial.rdb |only build/vignette.rds |binary data/villa_romana.rda |binary inst/doc/introduction.R | 91 + inst/doc/introduction.Rmd | 221 +++ inst/doc/introduction.html | 1556 +++++++++++++++++--------- inst/rmarkdown |only inst/shiny |only man/adjusted_rand_index.Rd | 10 man/archaeo_sim.Rd | 4 man/as_phase_table.Rd | 15 man/as_plotly.Rd | 38 man/as_sf_links.Rd | 4 man/as_sf_phase.Rd | 4 man/bootstrap_sef.Rd | 10 man/chronology_from_oxcal.Rd |only man/chronology_from_rcarbon.Rd |only man/compare_k.Rd | 36 man/confusion_matrix.Rd | 10 man/cv_sef.Rd | 16 man/detect_intrusions.Rd | 41 man/ese.Rd | 20 man/export_results.Rd | 6 man/export_sef_report.Rd |only man/fit_sef.Rd | 116 + man/gg_bootstrap.Rd | 38 man/gg_compare_k.Rd | 38 man/gg_confusion.Rd | 38 man/gg_convergence.Rd | 38 man/gg_cv.Rd | 38 man/gg_direction.Rd |only man/gg_energy.Rd | 38 man/gg_entropy.Rd | 38 man/gg_intrusions.Rd | 38 man/gg_longevity.Rd |only man/gg_map.Rd | 38 man/gg_outliers.Rd |only man/gg_phase_composition.Rd |only man/gg_phase_profile.Rd | 38 man/gg_phasefield.Rd | 38 man/gg_unit_coherence.Rd |only man/gg_weights.Rd | 38 man/harris_from_contexts.Rd | 35 man/launch_app.Rd |only man/load_geometries.Rd | 5 man/local_sei.Rd | 6 man/optimize_weights.Rd | 29 man/palimpsestr-package.Rd | 5 man/pdi.Rd | 27 man/phase_composition.Rd |only man/phase_diagnostic_table.Rd | 15 man/phase_transition_matrix.Rd | 6 man/plot_energy.Rd | 38 man/plot_entropy.Rd | 38 man/plot_phasefield.Rd | 38 man/plot_sei_profile.Rd | 38 man/predict_phase.Rd | 15 man/read_db.Rd | 5 man/read_harris.Rd | 6 man/read_pyarchinit.Rd |only man/recommend_setup.Rd |only man/reorder_phases.Rd | 8 man/sef_summary.Rd | 8 man/sei_matrix.Rd | 14 man/sei_sparse.Rd | 14 man/type_longevity.Rd |only man/us_summary_table.Rd | 6 man/validate_phases_harris.Rd | 6 man/villa_romana.Rd | 43 tests/testthat/test-basic.R | 7 tests/testthat/test-chrono-uncertainty.R |only tests/testthat/test-chronology-oxcal.R |only tests/testthat/test-chronology-rcarbon.R |only tests/testthat/test-class-multinomial.R |only tests/testthat/test-cv.R | 12 tests/testthat/test-directional-intrusions.R |only tests/testthat/test-export-report.R |only tests/testthat/test-feature-improvements.R |only tests/testthat/test-gg-model-plots.R |only tests/testthat/test-harris.R | 14 tests/testthat/test-intrusion-type.R |only tests/testthat/test-new-features.R | 6 tests/testthat/test-noise-component.R |only tests/testthat/test-noise-scoring.R |only tests/testthat/test-read-pyarchinit.R |only tests/testthat/test-recommend-setup.R |only tests/testthat/test-statistical-correctness.R |only tests/testthat/test-strat-dynamic.R |only tests/testthat/test-type-longevity.R |only vignettes/introduction.Rmd | 221 +++ 114 files changed, 4292 insertions(+), 1167 deletions(-)
Title: Convert Identifiers in Biological Databases
Description: Identifiers in biological databases connect different levels
of metadata, phenotype data or genotype data. This tool is designed to
easily convert identifiers within or between different biological
databases (Wang, Shixiang, et al. (2021) <DOI:10.1371/journal.pgen.1009557>).
Author: Shixiang Wang [aut, cre]
Maintainer: Shixiang Wang <w_shixiang@163.com>
This is a re-admission after prior archival of version 0.3.4 dated 2023-03-14
Diff between IDConverter versions 0.3.4 dated 2023-03-14 and 0.4.0 dated 2026-07-25
IDConverter-0.3.4/IDConverter/R/globalVars.R |only IDConverter-0.4.0/IDConverter/DESCRIPTION | 23 +- IDConverter-0.4.0/IDConverter/MD5 | 65 +++--- IDConverter-0.4.0/IDConverter/NAMESPACE | 5 IDConverter-0.4.0/IDConverter/NEWS.md | 51 ++++ IDConverter-0.4.0/IDConverter/R/IDConverter-package.R | 8 IDConverter-0.4.0/IDConverter/R/annotables-data.R | 28 +- IDConverter-0.4.0/IDConverter/R/build_annotables.R |only IDConverter-0.4.0/IDConverter/R/common_human_and_mouse_ids.R | 44 +++- IDConverter-0.4.0/IDConverter/R/convert_hm_orthologs.R |only IDConverter-0.4.0/IDConverter/R/load_data.R | 61 ++++- IDConverter-0.4.0/IDConverter/R/pair_gdc_samples.R |only IDConverter-0.4.0/IDConverter/R/parse_gdc_uuid.R | 5 IDConverter-0.4.0/IDConverter/README.md | 106 ++++++---- IDConverter-0.4.0/IDConverter/build/partial.rdb |binary IDConverter-0.4.0/IDConverter/build/vignette.rds |only IDConverter-0.4.0/IDConverter/data/icgc.rda |binary IDConverter-0.4.0/IDConverter/data/pcawg_full.rda |binary IDConverter-0.4.0/IDConverter/data/pcawg_simple.rda |binary IDConverter-0.4.0/IDConverter/data/tcga.rda |binary IDConverter-0.4.0/IDConverter/inst/doc |only IDConverter-0.4.0/IDConverter/man/IDConverter-package.Rd | 5 IDConverter-0.4.0/IDConverter/man/build_annotables.Rd |only IDConverter-0.4.0/IDConverter/man/convert_hm_genes.Rd | 16 + IDConverter-0.4.0/IDConverter/man/convert_hm_orthologs.Rd |only IDConverter-0.4.0/IDConverter/man/convert_icgc.Rd | 2 IDConverter-0.4.0/IDConverter/man/convert_pcawg.Rd | 4 IDConverter-0.4.0/IDConverter/man/convert_tcga.Rd | 2 IDConverter-0.4.0/IDConverter/man/load_data.Rd | 11 - IDConverter-0.4.0/IDConverter/man/ls_annotables.Rd | 22 +- IDConverter-0.4.0/IDConverter/man/pair_gdc_samples.Rd |only IDConverter-0.4.0/IDConverter/man/parse_gdc_file_uuid.Rd | 7 IDConverter-0.4.0/IDConverter/man/resolve_gene_aliases.Rd |only IDConverter-0.4.0/IDConverter/tests/testthat/test-roxytest-testexamples-convert_custom.R | 4 IDConverter-0.4.0/IDConverter/tests/testthat/test-roxytest-testexamples-convert_icgc.R | 16 - IDConverter-0.4.0/IDConverter/tests/testthat/test-roxytest-testexamples-convert_pcawg.R | 20 - IDConverter-0.4.0/IDConverter/tests/testthat/test-roxytest-testexamples-convert_tcga.R | 14 - IDConverter-0.4.0/IDConverter/vignettes |only 38 files changed, 360 insertions(+), 159 deletions(-)
Title: Functions to Streamline Statistical Analysis and Reporting
Description: Built upon popular R packages such as 'ggstatsplot' and 'ARTool', this collection offers a wide array of tools for simplifying reproducible analyses, generating high-quality visualizations, and producing 'APA'-compliant outputs. The primary goal of this package is to significantly reduce repetitive coding efforts, allowing you to focus on interpreting results. Whether you're dealing with ANOVA assumptions, reporting effect sizes, or creating publication-ready visualizations, this package makes these tasks easier.
Author: Mark Colley [aut, cre, cph]
Maintainer: Mark Colley <mark.colley@yahoo.de>
Diff between colleyRstats versions 0.1.3 dated 2026-07-16 and 0.1.4 dated 2026-07-25
DESCRIPTION | 6 +- MD5 | 18 +++--- NEWS.md | 14 +++++ R/reporting.R | 57 +++++++++++++------- R/utils.R | 55 +++++++++++++++++++- README.md | 2 inst/doc/analyzing-a-user-study.html | 24 ++++---- inst/doc/overleaf.html | 10 +-- tests/testthat/test-reporting.R | 96 +++++++++++++++++++++++++++++++++++ tests/testthat/test-utils.R | 35 ++++++++++++ 10 files changed, 267 insertions(+), 50 deletions(-)
Title: Identify Characteristics of Patients in the OMOP Common Data
Model
Description: Identify the characteristics of patients in data mapped to the
Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Mike Du [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Xintong Li [ctb] ,
Xihang Chen [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between PatientProfiles versions 1.5.0 dated 2026-02-24 and 1.6.0 dated 2026-07-25
PatientProfiles-1.5.0/PatientProfiles/inst/doc/concept-intersect.R |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/concept-intersect.Rmd |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/concept-intersect.html |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/summarise.R |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/summarise.Rmd |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/summarise.html |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/table-intersect.R |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/table-intersect.Rmd |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/table-intersect.html |only PatientProfiles-1.5.0/PatientProfiles/vignettes/concept-intersect.Rmd |only PatientProfiles-1.5.0/PatientProfiles/vignettes/summarise.Rmd |only PatientProfiles-1.5.0/PatientProfiles/vignettes/table-intersect.Rmd |only PatientProfiles-1.6.0/PatientProfiles/DESCRIPTION | 14 PatientProfiles-1.6.0/PatientProfiles/MD5 | 311 - PatientProfiles-1.6.0/PatientProfiles/NAMESPACE | 130 PatientProfiles-1.6.0/PatientProfiles/NEWS.md | 266 PatientProfiles-1.6.0/PatientProfiles/R/addBirthDay.R | 430 - PatientProfiles-1.6.0/PatientProfiles/R/addCategories.R | 492 - PatientProfiles-1.6.0/PatientProfiles/R/addCohortEvent.R |only PatientProfiles-1.6.0/PatientProfiles/R/addCohortIntersect.R | 760 +- PatientProfiles-1.6.0/PatientProfiles/R/addConceptEvent.R |only PatientProfiles-1.6.0/PatientProfiles/R/addConceptIntersect.R | 1381 ++-- PatientProfiles-1.6.0/PatientProfiles/R/addDeath.R | 370 - PatientProfiles-1.6.0/PatientProfiles/R/addDemographics.R | 966 +-- PatientProfiles-1.6.0/PatientProfiles/R/addDemographicsQuery.R | 1687 ++--- PatientProfiles-1.6.0/PatientProfiles/R/addEvent.R |only PatientProfiles-1.6.0/PatientProfiles/R/addIntersect.R | 1150 +-- PatientProfiles-1.6.0/PatientProfiles/R/addObservationPeriodId.R | 298 PatientProfiles-1.6.0/PatientProfiles/R/addTableIntersect.R | 783 +- PatientProfiles-1.6.0/PatientProfiles/R/benchmarkPatientProfiles.R | 506 - PatientProfiles-1.6.0/PatientProfiles/R/checks.R | 952 +-- PatientProfiles-1.6.0/PatientProfiles/R/documentationHelpers.R |only PatientProfiles-1.6.0/PatientProfiles/R/filterCohortId.R | 88 PatientProfiles-1.6.0/PatientProfiles/R/filterInObservation.R | 104 PatientProfiles-1.6.0/PatientProfiles/R/formats.R | 300 - PatientProfiles-1.6.0/PatientProfiles/R/mockPatientProfiles.R | 880 +- PatientProfiles-1.6.0/PatientProfiles/R/reexports-omopgenerics.R | 46 PatientProfiles-1.6.0/PatientProfiles/R/summariseResult.R | 1667 ++--- PatientProfiles-1.6.0/PatientProfiles/R/sysdata.rda |binary PatientProfiles-1.6.0/PatientProfiles/R/utilities.R | 407 - PatientProfiles-1.6.0/PatientProfiles/README.md | 906 +-- PatientProfiles-1.6.0/PatientProfiles/build/vignette.rds |binary PatientProfiles-1.6.0/PatientProfiles/inst/WORDLIST | 128 PatientProfiles-1.6.0/PatientProfiles/inst/doc/cohort-intersect.R | 426 - PatientProfiles-1.6.0/PatientProfiles/inst/doc/cohort-intersect.Rmd | 570 - PatientProfiles-1.6.0/PatientProfiles/inst/doc/cohort-intersect.html | 1638 ++--- PatientProfiles-1.6.0/PatientProfiles/inst/doc/demographics.R | 280 PatientProfiles-1.6.0/PatientProfiles/inst/doc/demographics.html | 1578 ++--- PatientProfiles-1.6.0/PatientProfiles/inst/doc/demographics.rmd | 408 - PatientProfiles-1.6.0/PatientProfiles/inst/doc/event.R |only PatientProfiles-1.6.0/PatientProfiles/inst/doc/event.html |only PatientProfiles-1.6.0/PatientProfiles/inst/doc/event.rmd |only PatientProfiles-1.6.0/PatientProfiles/man/PatientProfiles-package.Rd | 81 PatientProfiles-1.6.0/PatientProfiles/man/addAge.Rd | 136 PatientProfiles-1.6.0/PatientProfiles/man/addAgeQuery.Rd | 130 PatientProfiles-1.6.0/PatientProfiles/man/addBirthday.Rd | 27 PatientProfiles-1.6.0/PatientProfiles/man/addBirthdayQuery.Rd | 27 PatientProfiles-1.6.0/PatientProfiles/man/addCategories.Rd | 118 PatientProfiles-1.6.0/PatientProfiles/man/addCdmName.Rd | 60 PatientProfiles-1.6.0/PatientProfiles/man/addCohortEventDate.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/addCohortEventDays.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/addCohortIntersectCount.Rd | 143 PatientProfiles-1.6.0/PatientProfiles/man/addCohortIntersectDate.Rd | 131 PatientProfiles-1.6.0/PatientProfiles/man/addCohortIntersectDays.Rd | 141 PatientProfiles-1.6.0/PatientProfiles/man/addCohortIntersectField.Rd | 155 PatientProfiles-1.6.0/PatientProfiles/man/addCohortIntersectFlag.Rd | 139 PatientProfiles-1.6.0/PatientProfiles/man/addCohortName.Rd | 54 PatientProfiles-1.6.0/PatientProfiles/man/addConceptEventDate.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/addConceptEventDays.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/addConceptIntersectCount.Rd | 169 PatientProfiles-1.6.0/PatientProfiles/man/addConceptIntersectDate.Rd | 162 PatientProfiles-1.6.0/PatientProfiles/man/addConceptIntersectDays.Rd | 168 PatientProfiles-1.6.0/PatientProfiles/man/addConceptIntersectField.Rd | 197 PatientProfiles-1.6.0/PatientProfiles/man/addConceptIntersectFlag.Rd | 169 PatientProfiles-1.6.0/PatientProfiles/man/addConceptName.Rd | 82 PatientProfiles-1.6.0/PatientProfiles/man/addDateOfBirth.Rd | 104 PatientProfiles-1.6.0/PatientProfiles/man/addDateOfBirthQuery.Rd | 98 PatientProfiles-1.6.0/PatientProfiles/man/addDeathDate.Rd | 98 PatientProfiles-1.6.0/PatientProfiles/man/addDeathDays.Rd | 104 PatientProfiles-1.6.0/PatientProfiles/man/addDeathFlag.Rd | 104 PatientProfiles-1.6.0/PatientProfiles/man/addDemographics.Rd | 223 PatientProfiles-1.6.0/PatientProfiles/man/addDemographicsQuery.Rd | 214 PatientProfiles-1.6.0/PatientProfiles/man/addFutureObservation.Rd | 100 PatientProfiles-1.6.0/PatientProfiles/man/addFutureObservationQuery.Rd | 92 PatientProfiles-1.6.0/PatientProfiles/man/addInObservation.Rd | 106 PatientProfiles-1.6.0/PatientProfiles/man/addInObservationQuery.Rd | 102 PatientProfiles-1.6.0/PatientProfiles/man/addObservationPeriodId.Rd | 87 PatientProfiles-1.6.0/PatientProfiles/man/addObservationPeriodIdQuery.Rd | 81 PatientProfiles-1.6.0/PatientProfiles/man/addPriorObservation.Rd | 100 PatientProfiles-1.6.0/PatientProfiles/man/addPriorObservationQuery.Rd | 92 PatientProfiles-1.6.0/PatientProfiles/man/addSex.Rd | 70 PatientProfiles-1.6.0/PatientProfiles/man/addSexQuery.Rd | 66 PatientProfiles-1.6.0/PatientProfiles/man/addTableIntersectCount.Rd | 137 PatientProfiles-1.6.0/PatientProfiles/man/addTableIntersectDate.Rd | 131 PatientProfiles-1.6.0/PatientProfiles/man/addTableIntersectDays.Rd | 137 PatientProfiles-1.6.0/PatientProfiles/man/addTableIntersectField.Rd | 175 PatientProfiles-1.6.0/PatientProfiles/man/addTableIntersectFlag.Rd | 137 PatientProfiles-1.6.0/PatientProfiles/man/ageDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/ageGroupDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/ageImposeDayDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/ageImposeMonthDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/ageMissingDayDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/ageMissingMonthDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/ageNameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/ageUnitDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/allowDuplicatesDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/availableEstimates.Rd | 64 PatientProfiles-1.6.0/PatientProfiles/man/benchmarkPatientProfiles.Rd | 46 PatientProfiles-1.6.0/PatientProfiles/man/birthdayDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/birthdayNameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/cdmDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/censorDateDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/cohortDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/completeIntervalDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/conceptSetDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/dateOfBirthDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/dateOfBirthNameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/endDateColumn.Rd | 50 PatientProfiles-1.6.0/PatientProfiles/man/fieldDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/filterCohortId.Rd | 46 PatientProfiles-1.6.0/PatientProfiles/man/filterInObservation.Rd | 69 PatientProfiles-1.6.0/PatientProfiles/man/futureObservationDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/futureObservationNameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/futureObservationTypeDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/imposeDayDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/imposeMonthDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/inObservationDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/indexDateDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/missingAgeGroupValueDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/missingDayDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/missingMonthDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/missingSexValueDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/mockDisconnect.Rd | 28 PatientProfiles-1.6.0/PatientProfiles/man/mockPatientProfiles.Rd | 92 PatientProfiles-1.6.0/PatientProfiles/man/multipleEventsDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/nameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/nameObservationPeriodIdDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/nameStyleDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/nameStyleEventDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/orderDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/priorObservationDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/priorObservationNameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/priorObservationTypeDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/reexports.Rd | 34 PatientProfiles-1.6.0/PatientProfiles/man/sexDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/sexNameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/sourceConceptIdColumn.Rd | 50 PatientProfiles-1.6.0/PatientProfiles/man/standardConceptIdColumn.Rd | 50 PatientProfiles-1.6.0/PatientProfiles/man/startDateColumn.Rd | 50 PatientProfiles-1.6.0/PatientProfiles/man/summariseResult.Rd | 185 PatientProfiles-1.6.0/PatientProfiles/man/tableDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/tableNameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/targetCohortIdDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/targetCohortTableDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/targetDateDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/targetEndDateDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/targetStartDateDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/typeDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/variableTypes.Rd | 68 PatientProfiles-1.6.0/PatientProfiles/man/windowDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/xDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/tests/manual/test-sqltest.R | 188 PatientProfiles-1.6.0/PatientProfiles/tests/spelling.R | 10 PatientProfiles-1.6.0/PatientProfiles/tests/testthat.R | 24 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/setup.R | 110 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addAttributes.R | 84 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addBirthDay.R | 318 - PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addCategories.R | 346 - PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addCohortEvent.R |only PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addCohortIntersect.R | 2094 +++--- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addConceptEvent.R |only PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addConceptIntersect.R | 899 +- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addDeath.R | 720 +- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addDemographics.R | 2997 +++++----- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addFutureObservation.R | 636 +- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addInObservation.R | 400 - PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addIntersect.R | 2588 ++++---- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addObservationPeriodId.R | 478 - PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addPriorObservation.R | 472 - PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addSex.R | 194 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addTableIntersect.R | 1369 ++-- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-benchmarkPatientProfiles.R | 22 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-checks.R | 552 - PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-class.R | 158 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-columnType.R |only PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-filterCohortId.R | 54 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-filterInObservation.R | 167 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-format.R | 234 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-indexDate.R |only PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-mockPatientProfiles.R | 24 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-name.R | 216 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-summariseResult.R | 2370 ++++--- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-utilities.R | 36 PatientProfiles-1.6.0/PatientProfiles/vignettes/cohort-intersect.Rmd | 570 - PatientProfiles-1.6.0/PatientProfiles/vignettes/demographics.rmd | 408 - PatientProfiles-1.6.0/PatientProfiles/vignettes/event.rmd |only 196 files changed, 22728 insertions(+), 21611 deletions(-)
More information about PatientProfiles at CRAN
Permanent link
Title: Search Spaces for 'mlr3'
Description: Collection of search spaces for hyperparameter optimization in the
'mlr3' ecosystem. It features ready-to-use search spaces for many popular
machine learning algorithms. The search spaces are from scientific articles
and work for a wide range of data sets.
Author: Marc Becker [cre, aut] ,
Michel Lang [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuningspaces versions 0.6.0 dated 2025-05-16 and 0.7.0 dated 2026-07-25
DESCRIPTION | 11 +++++---- MD5 | 18 ++++++++------- NEWS.md | 5 ++++ R/TuningSpace.R | 41 +++++++++++++++++++++++++++--------- R/bibentries.R | 10 +++++++- R/tuning_spaces_rtdl.R |only README.md | 43 ++++++++++++++++++++------------------ man/TuningSpace.Rd | 2 - man/mlr_tuning_spaces_rtdl.Rd |only tests/testthat/helper.R | 1 tests/testthat/test_TuningSpace.R | 2 - 11 files changed, 87 insertions(+), 46 deletions(-)
More information about mlr3tuningspaces at CRAN
Permanent link
Title: Recommended Learners for 'mlr3'
Description: Recommended Learners for 'mlr3'. Extends 'mlr3' with
interfaces to essential machine learning packages on CRAN. This
includes, but is not limited to: (penalized) linear and logistic
regression, linear and quadratic discriminant analysis, k-nearest
neighbors, naive Bayes, support vector machines, and gradient
boosting.
Author: Michel Lang [aut] ,
Quay Au [aut] ,
Stefan Coors [aut] ,
Patrick Schratz [aut] ,
Marc Becker [cre, aut] ,
John Zobolas [aut] ,
Alexander Winterstetter [ctb],
Toby Hocking [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3learners versions 0.15.0 dated 2026-06-09 and 0.15.1 dated 2026-07-25
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ man/mlr3learners-package.Rd | 1 + src/ranger_var.c | 9 ++++----- tests/testthat/test_classif_ranger.R | 4 ++-- tests/testthat/test_classif_svm.R | 2 +- tests/testthat/test_regr_ranger.R | 2 +- tests/testthat/test_regr_svm.R | 2 +- 9 files changed, 26 insertions(+), 22 deletions(-)
Title: Hyperband for 'mlr3'
Description: Successive Halving (Jamieson and Talwalkar (2016)
<doi:10.48550/arXiv.1502.07943>) and Hyperband (Li et al. 2018
<doi:10.48550/arXiv.1603.06560>) optimization algorithm for the mlr3
ecosystem. The implementation in mlr3hyperband features improved
scheduling and parallelizes the evaluation of configurations. The
package includes tuners for hyperparameter optimization in mlr3tuning
and optimizers for black-box optimization in bbotk.
Author: Marc Becker [aut, cre] ,
Sebastian Gruber [aut] ,
Jakob Richter [aut] ,
Julia Moosbauer [aut] ,
Bernd Bischl [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3hyperband versions 1.1.0 dated 2026-03-17 and 1.1.1 dated 2026-07-25
mlr3hyperband-1.1.0/mlr3hyperband/tests/testthat/helper_rush.R |only mlr3hyperband-1.1.1/mlr3hyperband/DESCRIPTION | 11 - mlr3hyperband-1.1.1/mlr3hyperband/MD5 | 39 +-- mlr3hyperband-1.1.1/mlr3hyperband/NEWS.md | 6 mlr3hyperband-1.1.1/mlr3hyperband/README.md | 4 mlr3hyperband-1.1.1/mlr3hyperband/build/partial.rdb |binary mlr3hyperband-1.1.1/mlr3hyperband/man/figures/logo.png |binary mlr3hyperband-1.1.1/mlr3hyperband/man/mlr3hyperband-package.Rd | 1 mlr3hyperband-1.1.1/mlr3hyperband/man/mlr_optimizers_async_successive_halving.Rd | 100 +++++---- mlr3hyperband-1.1.1/mlr3hyperband/man/mlr_optimizers_hyperband.Rd | 94 +++++---- mlr3hyperband-1.1.1/mlr3hyperband/man/mlr_optimizers_successive_halving.Rd | 86 ++++---- mlr3hyperband-1.1.1/mlr3hyperband/man/mlr_tuners_async_successive_halving.Rd | 71 +++--- mlr3hyperband-1.1.1/mlr3hyperband/man/mlr_tuners_hyperband.Rd | 102 +++++----- mlr3hyperband-1.1.1/mlr3hyperband/man/mlr_tuners_successive_halving.Rd | 94 +++++---- mlr3hyperband-1.1.1/mlr3hyperband/tests/testthat/helper.R | 6 mlr3hyperband-1.1.1/mlr3hyperband/tests/testthat/setup.R | 8 mlr3hyperband-1.1.1/mlr3hyperband/tests/testthat/teardown.R | 2 mlr3hyperband-1.1.1/mlr3hyperband/tests/testthat/test_TunerAsyncSuccessiveHalving.R | 52 ++--- mlr3hyperband-1.1.1/mlr3hyperband/tests/testthat/test_TunerBatchHyperband.R | 14 - mlr3hyperband-1.1.1/mlr3hyperband/tests/testthat/test_TunerBatchSuccessiveHalving.R | 14 - mlr3hyperband-1.1.1/mlr3hyperband/tests/testthat/test_nds_selection.R | 10 21 files changed, 392 insertions(+), 322 deletions(-)
Title: Philippine Standard Geographic Code
Description: Provides access to the Philippine Standard Geographic Code (PSGC),
an official classification system for geographic areas in the Philippines
published by the Philippine Statistics Authority (PSA). Includes area names,
geographic levels (Region, Province, City, Municipality, Sub-Municipality,
and Barangay), and census population figures across multiple PSA publication
releases. Offers utilities to look up individual codes, filter by geographic
level, track code changes across releases via a built-in crosswalk, and
retrieve population data in long or wide format.
Author: Bhas Abdulsamad [aut, cre, cph]
Maintainer: Bhas Abdulsamad <aeabdulsamad@gmail.com>
Diff between psgc versions 0.1.0 dated 2026-05-13 and 0.1.2 dated 2026-07-25
DESCRIPTION | 6 MD5 | 23 +- NAMESPACE | 1 NEWS.md | 30 +++ R/get-psgc-wide.R |only R/map-psgc.R | 142 ++++++-------- R/releases.R | 2 R/sysdata.rda |binary inst/doc/psgc.html | 357 ++++++++++++++---------------------- man/get_psgc_wide.Rd |only man/map_psgc.Rd | 8 tests/testthat/test-get-psgc-wide.R |only tests/testthat/test-map-psgc.R | 38 +++ tests/testthat/test-releases.R | 8 14 files changed, 308 insertions(+), 307 deletions(-)
Title: Point-and-Click GUI Client for 'dqcheckr'
Description: A graphical user interface for the 'dqcheckr' package. Provides a
point-and-click 'shiny' application for configuring dataset quality checks,
running them against recurring file deliveries, and browsing historical
check results — without writing any R code. The package is feature-complete
and is now maintained for corrections only; configuration features are
developed in 'dqcheckr' itself, which offers a script-based workflow that
does not need this interface.
Author: Mick Mioduszewski [aut, cre]
Maintainer: Mick Mioduszewski <mick@mioduszewski.net>
Diff between dqcheckrGUI versions 0.2.0 dated 2026-06-29 and 0.2.2 dated 2026-07-25
DESCRIPTION | 21 - MD5 | 62 ++- NAMESPACE | 2 NEWS.md | 143 ++++++++ R/dqcheckrGUI-package.R | 8 README.md | 7 inst/app/R/config_io.R | 219 +++++++++++-- inst/app/R/server_global.R | 29 + inst/app/R/server_history.R | 139 ++++++-- inst/app/R/server_run.R | 96 ++++-- inst/app/R/server_step3_csv.R | 233 ++++++++++++-- inst/app/R/server_wizard.R | 322 +++++++++++++------- inst/app/R/ui_datasets.R | 23 + inst/app/R/ui_history.R | 1 inst/app/R/ui_wizard.R | 4 inst/app/R/utils.R | 334 +++++++++++++++++++- inst/app/app.R | 62 ++- inst/doc/dqcheckrGUI.Rmd | 12 inst/doc/dqcheckrGUI.html | 12 man/dqcheckrGUI-package.Rd | 9 tests/testthat/test-config-io.R | 218 +++++++++++++ tests/testthat/test-config-lock.R |only tests/testthat/test-drift-launch.R |only tests/testthat/test-encoding.R |only tests/testthat/test-fwf-column-types.R |only tests/testthat/test-fwf-ruler.R |only tests/testthat/test-history.R | 61 +++ tests/testthat/test-read-dataset-known.R |only tests/testthat/test-rule-overrides.R |only tests/testthat/test-run-panel.R |only tests/testthat/test-run-stop.R |only tests/testthat/test-sniff-csv.R |only tests/testthat/test-step5-meanshift.R |only tests/testthat/test-ui-behavior.R | 26 + tests/testthat/test-utils.R | 494 ++++++++++++++++++++++++++++++- tests/testthat/test-wizard-edit.R | 154 +++++++++ tests/testthat/test-wizard-step3.R |only vignettes/dqcheckrGUI.Rmd | 12 38 files changed, 2358 insertions(+), 345 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-29 1.3.5
2024-04-04 1.3.4
2023-01-26 1.3.3
2022-02-07 1.3.2
2021-05-06 1.3.1
2020-11-27 1.3.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-06-09 2.16.0
2023-10-14 2.15.3
2023-01-31 2.15.1
2022-01-24 2.14.0
2021-07-01 2.13.3
2021-06-26 2.13.2
2021-05-05 2.13.0
2021-02-11 2.12.6
2020-09-16 2.12.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-06-15 1.31.2
2025-08-19 1.31.1
2025-03-18 1.31.0
2024-01-17 1.30.4
2023-08-30 1.30.3
2023-03-22 1.30.2
2022-11-16 1.30.1
2022-05-02 1.30.0
2022-04-07 1.29.1
2022-01-27 1.29.0
2021-11-10 1.28.2
2021-08-13 1.28.1
2021-04-05 1.28.0
2021-02-02 1.27.7
2020-09-15 1.27.5
2020-07-22 1.27.0
2020-03-12 1.26.3
2020-02-10 1.26.2
2019-06-07 1.26.1
2019-04-02 1.26.0
2019-01-10 1.25.0
2018-09-12 1.24.0
2018-06-22 1.23.0
2018-05-02 1.22.0
2018-02-02 1.20.0
2017-11-14 1.19.0
2017-10-12 1.18.4
2017-08-23 1.18.0
2017-06-06 1.17.0
2017-04-17 1.16.0
2017-03-23 1.15.2
2017-02-23 1.15.0
2017-01-20 1.14.4
2016-11-22 1.14.2
2016-08-10 1.12.2
2016-06-30 1.10.4
2016-04-07 1.9.4
2016-02-22 1.8.0
2015-12-14 1.7.3
2015-11-19 1.6.1
2015-08-04 1.4.2
2015-06-18 1.3.2
2015-05-26 1.2.1
2015-04-20 1.1.1
2015-04-16 1.1.0
2015-04-04 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-29 2.0.3
2023-10-12 2.0.1
2023-01-26 1.13.0
2022-08-22 1.12.3
2022-01-18 1.12.2
2021-11-04 1.12.1
2021-09-17 1.12.0
2021-07-13 1.11.2
2021-06-30 1.11.1
2021-04-23 1.11.0
2020-12-14 1.10
2020-07-29 1.9.0
2020-05-19 1.8.5
2020-02-23 1.8.3
Title: Client for Statistics Canada's Open Economic Data
Description: Provides an R client for Statistics Canada's Web Data Service.
Users can describe the data they need in natural language, search the
official table catalogue, and download complete data tables in English or
French as data frames. Tables formerly known as CANSIM tables are
identified by Product IDs. Warin (2024)
<doi:10.5070/T5.1868>.
Author: Thierry Warin [aut, cre]
Maintainer: Thierry Warin <thierry.warin@hec.ca>
Diff between statcanR versions 0.3.0 dated 2026-07-17 and 0.3.9 dated 2026-07-25
DESCRIPTION | 9 - MD5 | 34 ++-- NAMESPACE | 3 NEWS.md | 159 ++++++++++++++++++++++ R/statCanR.R | 86 ++++++++++-- R/statcan_chat.R |only R/statcan_find.R | 211 +++++++++++++++++++++++++---- R/statcan_search.R | 51 ++++++- README.md | 234 +++++++++++++++++++++++++++++++-- inst/WORDLIST |only inst/doc/getting-started.R | 20 ++ inst/doc/getting-started.Rmd | 46 ++++++ inst/doc/getting-started.html | 124 +++++++++++++---- man/statcan_chat.Rd |only man/statcan_chat_continue.Rd |only tests/testthat/setup.R |only tests/testthat/test-download-helpers.R | 138 +++++++++++++++++++ tests/testthat/test-statcan-chat.R |only tests/testthat/test-statcan-find.R | 49 ++++++ tests/testthat/test-statcan-search.R | 27 +++ vignettes/getting-started.Rmd | 46 ++++++ 21 files changed, 1133 insertions(+), 104 deletions(-)
Title: Tide Heights
Description: Calculates tide heights based on tide station harmonics. It
includes the harmonics data for 637 US stations. The harmonics data
was converted from
<https://github.com/poissonconsulting/rtide/blob/main/data-raw/harmonics-dwf-20151227-free.tar.bz2>,
NOAA web site data processed by David Flater for 'XTide'. The code to
calculate tide heights from the harmonics is based on 'XTide'.
Author: Joe Thorley [aut] ,
Luke Miller [aut, cre],
Abram Fleishman [aut],
Poisson Consulting [cph]
Maintainer: Luke Miller <contact@lukemiller.org>
Diff between rtide versions 0.0.11 dated 2024-11-20 and 0.0.12 dated 2026-07-25
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 4 ++++ README.md | 4 +++- man/figures/README-unnamed-chunk-6-1.png |binary man/rtide-package.Rd | 1 + tests/testthat/test-tide-height.R | 2 +- 7 files changed, 21 insertions(+), 14 deletions(-)
Title: Draw Beautiful Symbol Nomenclature for Glycans
Description: A 'ggplot2'-native plotting engine for drawing reproducible beautiful
Symbol Nomenclature for Glycans (SNFG) glycan cartoons from glycan structure
objects or text notations, with support for batch export, structural
highlighting, and deep appearance customization. It follows the SNFG
specification described at <https://www.ncbi.nlm.nih.gov/glycans/snfg.html>.
Author: Bin Fu [aut, cre, cph] ,
Xisong Feng [aut]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>
Diff between glydraw versions 0.6.3 dated 2026-07-14 and 0.7.0 dated 2026-07-25
glydraw-0.6.3/glydraw/R/glydraw.R |only glydraw-0.6.3/glydraw/tests/testthat/test-glydraw.R |only glydraw-0.7.0/glydraw/DESCRIPTION | 10 glydraw-0.7.0/glydraw/MD5 | 72 +++-- glydraw-0.7.0/glydraw/NAMESPACE | 18 + glydraw-0.7.0/glydraw/NEWS.md | 21 + glydraw-0.7.0/glydraw/R/draw-cartoon.R |only glydraw-0.7.0/glydraw/R/export-cartoons.R |only glydraw-0.7.0/glydraw/R/geom-glycan.R |only glydraw-0.7.0/glydraw/R/geom-node-glycan.R |only glydraw-0.7.0/glydraw/R/ggplot2-compat.R |only glydraw-0.7.0/glydraw/R/glycan-grob.R |only glydraw-0.7.0/glydraw/R/glydraw-style.R |only glydraw-0.7.0/glydraw/R/guide-glycan.R |only glydraw-0.7.0/glydraw/R/internal-cartoon.R | 33 ++ glydraw-0.7.0/glydraw/R/internal-coordinates.R | 55 +++ glydraw-0.7.0/glydraw/R/internal-data.R | 5 glydraw-0.7.0/glydraw/R/internal-render.R | 18 - glydraw-0.7.0/glydraw/R/save-cartoon.R |only glydraw-0.7.0/glydraw/R/scale-glycan.R |only glydraw-0.7.0/glydraw/README.md | 46 +++ glydraw-0.7.0/glydraw/build/vignette.rds |binary glydraw-0.7.0/glydraw/inst/doc/ggplot2-extension.R |only glydraw-0.7.0/glydraw/inst/doc/ggplot2-extension.Rmd |only glydraw-0.7.0/glydraw/inst/doc/ggplot2-extension.html |only glydraw-0.7.0/glydraw/inst/doc/glydraw.html | 2 glydraw-0.7.0/glydraw/man/draw_cartoon.Rd | 8 glydraw-0.7.0/glydraw/man/export_cartoons.Rd | 8 glydraw-0.7.0/glydraw/man/figures/README-ggplot2-extension-1.png |only glydraw-0.7.0/glydraw/man/geom_glycan.Rd |only glydraw-0.7.0/glydraw/man/geom_node_glycan.Rd |only glydraw-0.7.0/glydraw/man/glycanGrob.Rd |only glydraw-0.7.0/glydraw/man/glydraw_style.Rd |only glydraw-0.7.0/glydraw/man/guide_glycan.Rd |only glydraw-0.7.0/glydraw/man/hjust_red_end.Rd |only glydraw-0.7.0/glydraw/man/print.glydraw_cartoon.Rd | 2 glydraw-0.7.0/glydraw/man/save_cartoon.Rd | 2 glydraw-0.7.0/glydraw/man/scale_x_glycan.Rd |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/cases/double-core-fuc-without-linkages.svg |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/cases/ggplot2-glycan-annotations.svg |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/cases/ggplot2-glycan-sizes.svg |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/cases/glycan-legend-labels.svg |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/cases/glycan-x-axis-labels.svg |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/cases/justified-vertical-ggplot2-glycans.svg |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/geom-glycan.md |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/guide-glycan.md |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/scale-glycan.md |only glydraw-0.7.0/glydraw/tests/testthat/helper-glycan-justification.R |only glydraw-0.7.0/glydraw/tests/testthat/test-cases.R | 143 ++++++++++ glydraw-0.7.0/glydraw/tests/testthat/test-draw-cartoon.R |only glydraw-0.7.0/glydraw/tests/testthat/test-export-cartoons.R |only glydraw-0.7.0/glydraw/tests/testthat/test-geom-glycan.R |only glydraw-0.7.0/glydraw/tests/testthat/test-geom-node-glycan.R |only glydraw-0.7.0/glydraw/tests/testthat/test-glycan-grob.R |only glydraw-0.7.0/glydraw/tests/testthat/test-guide-glycan.R |only glydraw-0.7.0/glydraw/tests/testthat/test-save-cartoon.R |only glydraw-0.7.0/glydraw/tests/testthat/test-scale-glycan.R |only glydraw-0.7.0/glydraw/vignettes/ggplot2-extension.Rmd |only 58 files changed, 399 insertions(+), 44 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.5.4.3 dated 2026-07-10 and 1.5.5 dated 2026-07-25
duckdb-1.5.4.3/duckdb/R/storage-config.R |only duckdb-1.5.4.3/duckdb/R/storage-locations.R |only duckdb-1.5.4.3/duckdb/man/duckdb_storage_config.Rd |only duckdb-1.5.4.3/duckdb/tests/testthat/_snaps/storage-config.md |only duckdb-1.5.4.3/duckdb/tests/testthat/test-secret_directory.R |only duckdb-1.5.4.3/duckdb/tests/testthat/test-storage-config.R |only duckdb-1.5.4.3/duckdb/tests/testthat/test-storage-markers.R |only duckdb-1.5.4.3/duckdb/tests/testthat/test-storage-resolve.R |only duckdb-1.5.5/duckdb/DESCRIPTION | 6 duckdb-1.5.5/duckdb/MD5 | 96 +-- duckdb-1.5.5/duckdb/NAMESPACE | 2 duckdb-1.5.5/duckdb/NEWS.md | 52 + duckdb-1.5.5/duckdb/R/Connection.R | 25 duckdb-1.5.5/duckdb/R/Driver.R | 206 ++++++ duckdb-1.5.5/duckdb/R/Result.R | 14 duckdb-1.5.5/duckdb/R/cpp11.R | 8 duckdb-1.5.5/duckdb/R/duckdb.R | 11 duckdb-1.5.5/duckdb/R/extensions.R | 112 +++ duckdb-1.5.5/duckdb/R/rethrow-gen.R | 14 duckdb-1.5.5/duckdb/R/storage-home.R |only duckdb-1.5.5/duckdb/R/storage-status.R |only duckdb-1.5.5/duckdb/R/storage.R | 302 ++++----- duckdb-1.5.5/duckdb/R/version.R | 2 duckdb-1.5.5/duckdb/man/duckdb.Rd | 111 +++ duckdb-1.5.5/duckdb/man/duckdb_connection-class.Rd | 20 duckdb-1.5.5/duckdb/man/duckdb_driver-class.Rd | 22 duckdb-1.5.5/duckdb/man/duckdb_result-class.Rd | 16 duckdb-1.5.5/duckdb/man/duckdb_result_arrow-class.Rd | 10 duckdb-1.5.5/duckdb/man/duckdb_storage.Rd | 302 ++++----- duckdb-1.5.5/duckdb/src/Makevars.win | 11 duckdb-1.5.5/duckdb/src/cpp11.cpp | 16 duckdb-1.5.5/duckdb/src/database.cpp | 3 duckdb-1.5.5/duckdb/src/duckdb.tar.xz |binary duckdb-1.5.5/duckdb/src/include/rapi.hpp | 6 duckdb-1.5.5/duckdb/src/include/rfuns_extension.hpp | 2 duckdb-1.5.5/duckdb/src/register.cpp | 99 ++- duckdb-1.5.5/duckdb/src/rfuns.cpp | 38 + duckdb-1.5.5/duckdb/src/statement.cpp | 33 + duckdb-1.5.5/duckdb/src/utils.cpp | 21 duckdb-1.5.5/duckdb/tests/testthat/_snaps/extensions-libcxx.md |only duckdb-1.5.5/duckdb/tests/testthat/_snaps/storage-home.md |only duckdb-1.5.5/duckdb/tests/testthat/_snaps/storage-status.md |only duckdb-1.5.5/duckdb/tests/testthat/helper-DBItest.R | 2 duckdb-1.5.5/duckdb/tests/testthat/test-DBItest.R | 10 duckdb-1.5.5/duckdb/tests/testthat/test-duckdb-extensions.R | 3 duckdb-1.5.5/duckdb/tests/testthat/test-extension_path.R | 5 duckdb-1.5.5/duckdb/tests/testthat/test-extensions-libcxx.R |only duckdb-1.5.5/duckdb/tests/testthat/test-fetch_arrow.R | 16 duckdb-1.5.5/duckdb/tests/testthat/test-register_arrow.R | 52 + duckdb-1.5.5/duckdb/tests/testthat/test-rfuns-minmax.R |only duckdb-1.5.5/duckdb/tests/testthat/test-rfuns-mixed-types.R |only duckdb-1.5.5/duckdb/tests/testthat/test-rfuns-narm.R |only duckdb-1.5.5/duckdb/tests/testthat/test-rfuns-sum.R |only duckdb-1.5.5/duckdb/tests/testthat/test-storage-cli-e2e.R | 24 duckdb-1.5.5/duckdb/tests/testthat/test-storage-e2e.R | 91 ++ duckdb-1.5.5/duckdb/tests/testthat/test-storage-home.R | 315 ++++++++-- duckdb-1.5.5/duckdb/tests/testthat/test-storage-message-once.R |only duckdb-1.5.5/duckdb/tests/testthat/test-storage-secret.R |only duckdb-1.5.5/duckdb/tests/testthat/test-storage-shared-home.R |only duckdb-1.5.5/duckdb/tests/testthat/test-storage-status.R |only 60 files changed, 1574 insertions(+), 504 deletions(-)