Title: 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra
Library
Description: 'Armadillo' is a templated C++ linear algebra library aiming towards
a good balance between speed and ease of use. It provides high-level syntax and
functionality deliberately similar to Matlab. It is useful for algorithm development
directly in C++, or quick conversion of research code into production environments.
It provides efficient classes for vectors, matrices and cubes where dense and sparse
matrices are supported. Integer, floating point and complex numbers are supported.
A sophisticated expression evaluator (based on template meta-programming) automatically
combines several operations to increase speed and efficiency. Dynamic evaluation
automatically chooses optimal code paths based on detected matrix structures.
Matrix decompositions are provided through integration with LAPACK, or one of its
high performance drop-in replacements (such as 'MKL' or 'OpenBLAS'). It can
automatically use 'OpenMP' multi-threading (parallelisation) to speed up
computationally expensive operations [...truncated...]
Author: Dirk Eddelbuettel [aut, cre] ,
Romain Francois [aut] ,
Doug Bates [aut] ,
Binxiang Ni [aut],
Conrad Sanderson [aut]
Maintainer: Dirk Eddelbuettel <edd@debian.org>
Diff between RcppArmadillo versions 15.4.0-1 dated 2026-06-19 and 15.4.2-1 dated 2026-07-25
ChangeLog | 34 +++- DESCRIPTION | 8 - MD5 | 78 ++++----- build/partial.rdb |binary build/vignette.rds |binary configure | 18 +- configure.ac | 2 inst/NEWS.Rd | 19 ++ inst/include/armadillo_bits/Mat_bones.hpp | 6 inst/include/armadillo_bits/Mat_meat.hpp | 60 +++++++ inst/include/armadillo_bits/SpBase_bones.hpp | 2 inst/include/armadillo_bits/SpBase_meat.hpp | 10 - inst/include/armadillo_bits/SpGlue_bones.hpp | 3 inst/include/armadillo_bits/SpGlue_meat.hpp | 3 inst/include/armadillo_bits/SpMat_bones.hpp | 3 inst/include/armadillo_bits/SpMat_meat.hpp | 7 inst/include/armadillo_bits/SpOp_bones.hpp | 3 inst/include/armadillo_bits/SpOp_meat.hpp | 3 inst/include/armadillo_bits/SpSubview_bones.hpp | 3 inst/include/armadillo_bits/SpSubview_col_list_bones.hpp | 2 inst/include/armadillo_bits/SpSubview_col_list_meat.hpp | 11 + inst/include/armadillo_bits/SpSubview_meat.hpp | 3 inst/include/armadillo_bits/arma_version.hpp | 2 inst/include/armadillo_bits/diskio_meat.hpp | 2 inst/include/armadillo_bits/memory.hpp | 10 - inst/include/armadillo_bits/mtSpOp_meat.hpp | 2 inst/include/armadillo_bits/mtSpReduceOp_bones.hpp | 3 inst/include/armadillo_bits/mtSpReduceOp_meat.hpp | 11 + inst/include/armadillo_bits/op_diagmat_bones.hpp | 11 + inst/include/armadillo_bits/op_diagmat_meat.hpp | 106 +++++++++---- inst/include/armadillo_bits/op_diagvec_bones.hpp | 18 ++ inst/include/armadillo_bits/op_diagvec_meat.hpp | 101 ++++++++++-- inst/include/armadillo_bits/op_repelem_bones.hpp | 2 inst/include/armadillo_bits/op_repelem_meat.hpp | 17 ++ inst/include/armadillo_bits/op_vectorise_bones.hpp | 2 inst/include/armadillo_bits/op_vectorise_meat.hpp | 118 +-------------- inst/include/armadillo_bits/spdiagview_bones.hpp | 3 inst/include/armadillo_bits/spdiagview_meat.hpp | 11 + inst/include/armadillo_bits/spop_diagmat_bones.hpp | 7 inst/include/armadillo_bits/spop_diagmat_meat.hpp | 29 +++ 40 files changed, 480 insertions(+), 253 deletions(-)
Title: Polyspherical Kernel Density Estimation
Description: Kernel density estimation on the polysphere, (hyper)sphere, and
circle. Includes functions for density estimation, regression estimation,
ridge estimation, bandwidth selection, kernels, samplers, and homogeneity
tests. Companion package to García-Portugués and Meilán-Vila (2025)
<doi:10.1080/01621459.2025.2521898> and García-Portugués and Meilán-Vila
(2023) <doi:10.1007/978-3-031-32729-2_4>.
Author: Eduardo Garcia-Portugues [aut, cre] ,
Andrea Meilan-Vila [ctb]
Maintainer: Eduardo Garcia-Portugues <edgarcia@est-econ.uc3m.es>
Diff between polykde versions 1.1.7 dated 2025-07-27 and 1.2.0 dated 2026-07-25
polykde-1.1.7/polykde/tests/testthat/tests_grad-hess.R |only polykde-1.2.0/polykde/DESCRIPTION | 20 - polykde-1.2.0/polykde/MD5 | 141 +++---- polykde-1.2.0/polykde/NEWS.md | 17 polykde-1.2.0/polykde/R/RcppExports.R | 174 +++++---- polykde-1.2.0/polykde/R/angles.R | 28 - polykde-1.2.0/polykde/R/bwd.R | 208 +++++++--- polykde-1.2.0/polykde/R/data.R | 25 - polykde-1.2.0/polykde/R/distr.R | 10 polykde-1.2.0/polykde/R/euler.R | 223 ++++++----- polykde-1.2.0/polykde/R/kernels.R | 31 - polykde-1.2.0/polykde/R/kre.R | 42 +- polykde-1.2.0/polykde/R/mise.R | 99 +++-- polykde-1.2.0/polykde/R/polykde-package.R | 6 polykde-1.2.0/polykde/R/samplers.R | 298 ++++++++------- polykde-1.2.0/polykde/R/sreps.R | 48 +- polykde-1.2.0/polykde/R/sysdata.rda |binary polykde-1.2.0/polykde/R/tests.R | 73 ++- polykde-1.2.0/polykde/R/utils.R | 327 ++++++++++++----- polykde-1.2.0/polykde/R/zzz.R | 22 - polykde-1.2.0/polykde/build/partial.rdb |binary polykde-1.2.0/polykde/inst/CITATION | 20 + polykde-1.2.0/polykde/inst/WORDLIST | 3 polykde-1.2.0/polykde/man/angles_to_polysph.Rd | 4 polykde-1.2.0/polykde/man/angles_to_sph.Rd | 10 polykde-1.2.0/polykde/man/angles_to_torus.Rd | 8 polykde-1.2.0/polykde/man/bw_cv_kre_polysph.Rd | 23 - polykde-1.2.0/polykde/man/bw_cv_polysph.Rd | 60 ++- polykde-1.2.0/polykde/man/bw_lcv_min_epa.Rd | 4 polykde-1.2.0/polykde/man/bw_mrot_polysph.Rd | 24 - polykde-1.2.0/polykde/man/bw_rot_polysph.Rd | 35 + polykde-1.2.0/polykde/man/clean_euler_ridge.Rd | 86 ++-- polykde-1.2.0/polykde/man/comp_ind_dj.Rd | 6 polykde-1.2.0/polykde/man/d_mvmf_polysph.Rd | 12 polykde-1.2.0/polykde/man/dist_polysph.Rd | 18 polykde-1.2.0/polykde/man/eff_kern.Rd | 32 + polykde-1.2.0/polykde/man/euler_ridge.Rd | 178 ++++++--- polykde-1.2.0/polykde/man/fib_latt.Rd | 2 polykde-1.2.0/polykde/man/figures |only polykde-1.2.0/polykde/man/grad_hess_kde_polysph.Rd | 36 + polykde-1.2.0/polykde/man/hammer_to_sph.Rd | 2 polykde-1.2.0/polykde/man/hippocampus.Rd | 25 - polykde-1.2.0/polykde/man/hom_test_polysph.Rd | 38 + polykde-1.2.0/polykde/man/index_ridge.Rd | 135 ++++--- polykde-1.2.0/polykde/man/interp_polysph.Rd | 4 polykde-1.2.0/polykde/man/kde_polysph.Rd | 43 +- polykde-1.2.0/polykde/man/kernel.Rd | 21 - polykde-1.2.0/polykde/man/kre_polysph.Rd | 32 - polykde-1.2.0/polykde/man/log_cv_kde_polysph.Rd | 26 - polykde-1.2.0/polykde/man/polykde-package.Rd | 6 polykde-1.2.0/polykde/man/proj_grad_kde_polysph.Rd | 35 + polykde-1.2.0/polykde/man/proj_polysph.Rd | 11 polykde-1.2.0/polykde/man/r_g_kern.Rd | 2 polykde-1.2.0/polykde/man/r_kde_polysph.Rd | 63 +-- polykde-1.2.0/polykde/man/r_kern_polysph.Rd | 113 +++-- polykde-1.2.0/polykde/man/r_mvmf_polysph.Rd | 14 polykde-1.2.0/polykde/man/r_path_s1r.Rd | 145 ++++--- polykde-1.2.0/polykde/man/r_unif_polysph.Rd | 2 polykde-1.2.0/polykde/man/r_vmf_polysph.Rd | 3 polykde-1.2.0/polykde/man/view_srep.Rd | 86 +++- polykde-1.2.0/polykde/src/euler.cpp | 104 +++-- polykde-1.2.0/polykde/src/grad-hess.cpp | 36 + polykde-1.2.0/polykde/src/kde.cpp | 33 + polykde-1.2.0/polykde/src/utils.cpp | 43 +- polykde-1.2.0/polykde/tests/testthat/Rplots.pdf |binary polykde-1.2.0/polykde/tests/testthat/tests_angles.R | 5 polykde-1.2.0/polykde/tests/testthat/tests_bwd.R | 84 +++- polykde-1.2.0/polykde/tests/testthat/tests_distr.R | 22 + polykde-1.2.0/polykde/tests/testthat/tests_grad_hess.R |only polykde-1.2.0/polykde/tests/testthat/tests_kde.R | 5 polykde-1.2.0/polykde/tests/testthat/tests_mise.R | 41 ++ polykde-1.2.0/polykde/tests/testthat/tests_tests.R | 22 + polykde-1.2.0/polykde/tests/testthat/tests_utils.R | 251 ++++++++++--- 73 files changed, 2482 insertions(+), 1323 deletions(-)
Title: Detect Text Reuse and Document Similarity
Description: Tools for measuring similarity among documents and detecting
passages which have been reused. Implements shingled n-gram, skip n-gram,
and other tokenizers; similarity/dissimilarity functions; pairwise
comparisons; minhash and locality sensitive hashing algorithms; and a
version of the Smith-Waterman local alignment algorithm suitable for
natural language.
Author: Lincoln Mullen [aut] ,
Yaoxiang Li [aut, cre]
Maintainer: Yaoxiang Li <liyaoxiang@outlook.com>
Diff between textreuse versions 1.0.1 dated 2026-05-07 and 1.0.2 dated 2026-07-25
DESCRIPTION | 12 ++++----- MD5 | 42 ++++++++++++++++---------------- NEWS.md | 25 +++++++++++++------ R/align_local.R | 2 - R/lsh.R | 8 +++--- R/lsh_candidates.R | 3 +- R/lsh_probability.R | 3 +- R/minhash.R | 2 - R/textreuse-package.r | 4 +-- README.md | 11 +++----- build/vignette.rds |binary inst/doc/textreuse-alignment.html | 4 +-- inst/doc/textreuse-introduction.html | 10 +++---- inst/doc/textreuse-minhash.html | 45 +++++++++++++++++------------------ inst/doc/textreuse-pairwise.html | 4 +-- man/align_local.Rd | 2 - man/lsh.Rd | 2 - man/lsh_probability.Rd | 3 +- man/minhash_generator.Rd | 2 - man/reexports.Rd | 2 - man/textreuse-package.Rd | 9 +++---- tests/testthat/test-lsh.R | 1 22 files changed, 104 insertions(+), 92 deletions(-)
Title: Cumulative Calibration Assessment for Prediction Models
Description: Tools for visualization of, and inference on, the calibration of prediction models on the cumulative domain. This provides a method for evaluating calibration of risk prediction models without having to group the data or use tuning parameters (e.g., loess bandwidth). This package implements the methodology described in Sadatsafavi and Petkau (2024) <doi:10.1002/sim.10138>. The core of the package is cumulcalib(), which takes in vectors of binary responses and predicted risks. The package also implements non-parametric assessment of the calibration of individualized treatment effect (ITE) models using data from a randomized trial, via cumulcalibITE(), as described in Sadatsafavi et al. (2025) <doi:10.48550/arXiv.2512.08140>. The plot() and summary() methods are implemented for the results returned by cumulcalib() and cumulcalibITE().
Author: Mohsen Sadatsafavi [aut, cre]
Maintainer: Mohsen Sadatsafavi <mohsen.sadatsafavi@ubc.ca>
Diff between cumulcalib versions 0.0.1 dated 2024-06-13 and 0.1.0 dated 2026-07-25
cumulcalib-0.0.1/cumulcalib/tests/testthat/test-test.R |only cumulcalib-0.1.0/cumulcalib/DESCRIPTION | 14 cumulcalib-0.1.0/cumulcalib/LICENSE | 4 cumulcalib-0.1.0/cumulcalib/MD5 | 65 cumulcalib-0.1.0/cumulcalib/NAMESPACE | 3 cumulcalib-0.1.0/cumulcalib/NEWS.md | 38 cumulcalib-0.1.0/cumulcalib/R/core.R | 1273 +++++----- cumulcalib-0.1.0/cumulcalib/R/cumulcalib-package.R | 24 cumulcalib-0.1.0/cumulcalib/R/plot.R |only cumulcalib-0.1.0/cumulcalib/README.md | 47 cumulcalib-0.1.0/cumulcalib/build/partial.rdb |binary cumulcalib-0.1.0/cumulcalib/build/vignette.rds |binary cumulcalib-0.1.0/cumulcalib/inst/WORDLIST | 9 cumulcalib-0.1.0/cumulcalib/inst/doc/tutorial.Rmd | 384 +-- cumulcalib-0.1.0/cumulcalib/inst/doc/tutorial.html | 262 -- cumulcalib-0.1.0/cumulcalib/inst/doc/tutorialITE.R |only cumulcalib-0.1.0/cumulcalib/inst/doc/tutorialITE.Rmd |only cumulcalib-0.1.0/cumulcalib/inst/doc/tutorialITE.html |only cumulcalib-0.1.0/cumulcalib/man/cumulcalib-package.Rd | 42 cumulcalib-0.1.0/cumulcalib/man/cumulcalib.Rd | 64 cumulcalib-0.1.0/cumulcalib/man/cumulcalibITE.Rd |only cumulcalib-0.1.0/cumulcalib/man/figures/README-example-1.png |binary cumulcalib-0.1.0/cumulcalib/man/pKolmogorov.Rd | 38 cumulcalib-0.1.0/cumulcalib/man/pMAD_BM.Rd | 38 cumulcalib-0.1.0/cumulcalib/man/pMAD_BM_c.Rd | 62 cumulcalib-0.1.0/cumulcalib/man/plot.cumulcalib.Rd | 109 cumulcalib-0.1.0/cumulcalib/man/print.cumulcalib.Rd |only cumulcalib-0.1.0/cumulcalib/man/print.summary.cumulcalib.Rd |only cumulcalib-0.1.0/cumulcalib/man/qKolmogorov.Rd | 34 cumulcalib-0.1.0/cumulcalib/man/qMAD_BM.Rd | 34 cumulcalib-0.1.0/cumulcalib/man/qMAD_BM_c.Rd | 38 cumulcalib-0.1.0/cumulcalib/man/summary.cumulcalib.Rd | 64 cumulcalib-0.1.0/cumulcalib/tests/testthat.R | 24 cumulcalib-0.1.0/cumulcalib/tests/testthat/test-cumulcalib.R |only cumulcalib-0.1.0/cumulcalib/tests/testthat/test-cumulcalibITE.R |only cumulcalib-0.1.0/cumulcalib/tests/testthat/test-distributions.R |only cumulcalib-0.1.0/cumulcalib/tests/testthat/test-plot.R |only cumulcalib-0.1.0/cumulcalib/tests/testthat/test-print.R |only cumulcalib-0.1.0/cumulcalib/tests/testthat/test-summary.R |only cumulcalib-0.1.0/cumulcalib/vignettes/tutorial.Rmd | 384 +-- cumulcalib-0.1.0/cumulcalib/vignettes/tutorialITE.Rmd |only 41 files changed, 1657 insertions(+), 1397 deletions(-)
Title: Probabilistic Decomposition of Archaeological Palimpsests
Description: Probabilistic framework for the analysis of archaeological
palimpsests based on the Stratigraphic Entanglement Field (SEF).
Integrates spatial proximity, stratigraphic depth, chronological
overlap, and cultural similarity to estimate latent depositional
phases via diagonal Gaussian mixture Expectation-Maximisation (EM).
Provides the Stratigraphic Entanglement Index (SEI), Excavation
Stratigraphic Energy (ESE), and Palimpsest Dissolution Index (PDI)
for quantifying depositional coherence, detecting intrusive finds,
and measuring palimpsest formation. Includes simulation, diagnostics,
phase-count selection, publication-quality plots, and Geographic
Information System (GIS) export via 'sf'. Methods are described in Cocca (2026)
<https://github.com/enzococca/palimpsestr>.
Author: Enzo Cocca [aut, cre]
Maintainer: Enzo Cocca <enzo.ccc@gmail.com>
Diff between palimpsestr versions 0.10.0 dated 2026-04-09 and 0.24.0 dated 2026-07-25
DESCRIPTION | 13 MD5 | 188 +-- NAMESPACE | 14 NEWS.md | 398 ++++++ R/app.R |only R/bootstrap.R | 16 R/chronology.R |only R/cv.R | 50 R/data.R | 43 R/db_connect.R | 452 +++++++ R/diagnostics.R | 27 R/ese.R | 13 R/export_report.R |only R/fit.R | 344 +++++ R/gg_model_plots.R |only R/gg_plots.R | 42 R/harris.R | 37 R/longevity.R |only R/optimize.R | 58 R/recommend.R |only R/sei.R | 23 R/simulate.R | 8 R/utils.R | 401 ++++++ README.md | 13 build/partial.rdb |only build/vignette.rds |binary data/villa_romana.rda |binary inst/doc/introduction.R | 91 + inst/doc/introduction.Rmd | 221 +++ inst/doc/introduction.html | 1556 +++++++++++++++++--------- inst/rmarkdown |only inst/shiny |only man/adjusted_rand_index.Rd | 10 man/archaeo_sim.Rd | 4 man/as_phase_table.Rd | 15 man/as_plotly.Rd | 38 man/as_sf_links.Rd | 4 man/as_sf_phase.Rd | 4 man/bootstrap_sef.Rd | 10 man/chronology_from_oxcal.Rd |only man/chronology_from_rcarbon.Rd |only man/compare_k.Rd | 36 man/confusion_matrix.Rd | 10 man/cv_sef.Rd | 16 man/detect_intrusions.Rd | 41 man/ese.Rd | 20 man/export_results.Rd | 6 man/export_sef_report.Rd |only man/fit_sef.Rd | 116 + man/gg_bootstrap.Rd | 38 man/gg_compare_k.Rd | 38 man/gg_confusion.Rd | 38 man/gg_convergence.Rd | 38 man/gg_cv.Rd | 38 man/gg_direction.Rd |only man/gg_energy.Rd | 38 man/gg_entropy.Rd | 38 man/gg_intrusions.Rd | 38 man/gg_longevity.Rd |only man/gg_map.Rd | 38 man/gg_outliers.Rd |only man/gg_phase_composition.Rd |only man/gg_phase_profile.Rd | 38 man/gg_phasefield.Rd | 38 man/gg_unit_coherence.Rd |only man/gg_weights.Rd | 38 man/harris_from_contexts.Rd | 35 man/launch_app.Rd |only man/load_geometries.Rd | 5 man/local_sei.Rd | 6 man/optimize_weights.Rd | 29 man/palimpsestr-package.Rd | 5 man/pdi.Rd | 27 man/phase_composition.Rd |only man/phase_diagnostic_table.Rd | 15 man/phase_transition_matrix.Rd | 6 man/plot_energy.Rd | 38 man/plot_entropy.Rd | 38 man/plot_phasefield.Rd | 38 man/plot_sei_profile.Rd | 38 man/predict_phase.Rd | 15 man/read_db.Rd | 5 man/read_harris.Rd | 6 man/read_pyarchinit.Rd |only man/recommend_setup.Rd |only man/reorder_phases.Rd | 8 man/sef_summary.Rd | 8 man/sei_matrix.Rd | 14 man/sei_sparse.Rd | 14 man/type_longevity.Rd |only man/us_summary_table.Rd | 6 man/validate_phases_harris.Rd | 6 man/villa_romana.Rd | 43 tests/testthat/test-basic.R | 7 tests/testthat/test-chrono-uncertainty.R |only tests/testthat/test-chronology-oxcal.R |only tests/testthat/test-chronology-rcarbon.R |only tests/testthat/test-class-multinomial.R |only tests/testthat/test-cv.R | 12 tests/testthat/test-directional-intrusions.R |only tests/testthat/test-export-report.R |only tests/testthat/test-feature-improvements.R |only tests/testthat/test-gg-model-plots.R |only tests/testthat/test-harris.R | 14 tests/testthat/test-intrusion-type.R |only tests/testthat/test-new-features.R | 6 tests/testthat/test-noise-component.R |only tests/testthat/test-noise-scoring.R |only tests/testthat/test-read-pyarchinit.R |only tests/testthat/test-recommend-setup.R |only tests/testthat/test-statistical-correctness.R |only tests/testthat/test-strat-dynamic.R |only tests/testthat/test-type-longevity.R |only vignettes/introduction.Rmd | 221 +++ 114 files changed, 4292 insertions(+), 1167 deletions(-)
Title: Convert Identifiers in Biological Databases
Description: Identifiers in biological databases connect different levels
of metadata, phenotype data or genotype data. This tool is designed to
easily convert identifiers within or between different biological
databases (Wang, Shixiang, et al. (2021) <DOI:10.1371/journal.pgen.1009557>).
Author: Shixiang Wang [aut, cre]
Maintainer: Shixiang Wang <w_shixiang@163.com>
This is a re-admission after prior archival of version 0.3.4 dated 2023-03-14
Diff between IDConverter versions 0.3.4 dated 2023-03-14 and 0.4.0 dated 2026-07-25
IDConverter-0.3.4/IDConverter/R/globalVars.R |only IDConverter-0.4.0/IDConverter/DESCRIPTION | 23 +- IDConverter-0.4.0/IDConverter/MD5 | 65 +++--- IDConverter-0.4.0/IDConverter/NAMESPACE | 5 IDConverter-0.4.0/IDConverter/NEWS.md | 51 ++++ IDConverter-0.4.0/IDConverter/R/IDConverter-package.R | 8 IDConverter-0.4.0/IDConverter/R/annotables-data.R | 28 +- IDConverter-0.4.0/IDConverter/R/build_annotables.R |only IDConverter-0.4.0/IDConverter/R/common_human_and_mouse_ids.R | 44 +++- IDConverter-0.4.0/IDConverter/R/convert_hm_orthologs.R |only IDConverter-0.4.0/IDConverter/R/load_data.R | 61 ++++- IDConverter-0.4.0/IDConverter/R/pair_gdc_samples.R |only IDConverter-0.4.0/IDConverter/R/parse_gdc_uuid.R | 5 IDConverter-0.4.0/IDConverter/README.md | 106 ++++++---- IDConverter-0.4.0/IDConverter/build/partial.rdb |binary IDConverter-0.4.0/IDConverter/build/vignette.rds |only IDConverter-0.4.0/IDConverter/data/icgc.rda |binary IDConverter-0.4.0/IDConverter/data/pcawg_full.rda |binary IDConverter-0.4.0/IDConverter/data/pcawg_simple.rda |binary IDConverter-0.4.0/IDConverter/data/tcga.rda |binary IDConverter-0.4.0/IDConverter/inst/doc |only IDConverter-0.4.0/IDConverter/man/IDConverter-package.Rd | 5 IDConverter-0.4.0/IDConverter/man/build_annotables.Rd |only IDConverter-0.4.0/IDConverter/man/convert_hm_genes.Rd | 16 + IDConverter-0.4.0/IDConverter/man/convert_hm_orthologs.Rd |only IDConverter-0.4.0/IDConverter/man/convert_icgc.Rd | 2 IDConverter-0.4.0/IDConverter/man/convert_pcawg.Rd | 4 IDConverter-0.4.0/IDConverter/man/convert_tcga.Rd | 2 IDConverter-0.4.0/IDConverter/man/load_data.Rd | 11 - IDConverter-0.4.0/IDConverter/man/ls_annotables.Rd | 22 +- IDConverter-0.4.0/IDConverter/man/pair_gdc_samples.Rd |only IDConverter-0.4.0/IDConverter/man/parse_gdc_file_uuid.Rd | 7 IDConverter-0.4.0/IDConverter/man/resolve_gene_aliases.Rd |only IDConverter-0.4.0/IDConverter/tests/testthat/test-roxytest-testexamples-convert_custom.R | 4 IDConverter-0.4.0/IDConverter/tests/testthat/test-roxytest-testexamples-convert_icgc.R | 16 - IDConverter-0.4.0/IDConverter/tests/testthat/test-roxytest-testexamples-convert_pcawg.R | 20 - IDConverter-0.4.0/IDConverter/tests/testthat/test-roxytest-testexamples-convert_tcga.R | 14 - IDConverter-0.4.0/IDConverter/vignettes |only 38 files changed, 360 insertions(+), 159 deletions(-)
Title: Functions to Streamline Statistical Analysis and Reporting
Description: Built upon popular R packages such as 'ggstatsplot' and 'ARTool', this collection offers a wide array of tools for simplifying reproducible analyses, generating high-quality visualizations, and producing 'APA'-compliant outputs. The primary goal of this package is to significantly reduce repetitive coding efforts, allowing you to focus on interpreting results. Whether you're dealing with ANOVA assumptions, reporting effect sizes, or creating publication-ready visualizations, this package makes these tasks easier.
Author: Mark Colley [aut, cre, cph]
Maintainer: Mark Colley <mark.colley@yahoo.de>
Diff between colleyRstats versions 0.1.3 dated 2026-07-16 and 0.1.4 dated 2026-07-25
DESCRIPTION | 6 +- MD5 | 18 +++--- NEWS.md | 14 +++++ R/reporting.R | 57 +++++++++++++------- R/utils.R | 55 +++++++++++++++++++- README.md | 2 inst/doc/analyzing-a-user-study.html | 24 ++++---- inst/doc/overleaf.html | 10 +-- tests/testthat/test-reporting.R | 96 +++++++++++++++++++++++++++++++++++ tests/testthat/test-utils.R | 35 ++++++++++++ 10 files changed, 267 insertions(+), 50 deletions(-)
Title: Identify Characteristics of Patients in the OMOP Common Data
Model
Description: Identify the characteristics of patients in data mapped to the
Observational Medical Outcomes Partnership (OMOP) common data model.
Author: Marti Catala [aut, cre] ,
Yuchen Guo [aut] ,
Mike Du [aut] ,
Kim Lopez-Guell [aut] ,
Edward Burn [aut] ,
Nuria Mercade-Besora [aut] ,
Xintong Li [ctb] ,
Xihang Chen [ctb]
Maintainer: Marti Catala <marti.catalasabate@ndorms.ox.ac.uk>
Diff between PatientProfiles versions 1.5.0 dated 2026-02-24 and 1.6.0 dated 2026-07-25
PatientProfiles-1.5.0/PatientProfiles/inst/doc/concept-intersect.R |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/concept-intersect.Rmd |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/concept-intersect.html |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/summarise.R |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/summarise.Rmd |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/summarise.html |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/table-intersect.R |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/table-intersect.Rmd |only PatientProfiles-1.5.0/PatientProfiles/inst/doc/table-intersect.html |only PatientProfiles-1.5.0/PatientProfiles/vignettes/concept-intersect.Rmd |only PatientProfiles-1.5.0/PatientProfiles/vignettes/summarise.Rmd |only PatientProfiles-1.5.0/PatientProfiles/vignettes/table-intersect.Rmd |only PatientProfiles-1.6.0/PatientProfiles/DESCRIPTION | 14 PatientProfiles-1.6.0/PatientProfiles/MD5 | 311 - PatientProfiles-1.6.0/PatientProfiles/NAMESPACE | 130 PatientProfiles-1.6.0/PatientProfiles/NEWS.md | 266 PatientProfiles-1.6.0/PatientProfiles/R/addBirthDay.R | 430 - PatientProfiles-1.6.0/PatientProfiles/R/addCategories.R | 492 - PatientProfiles-1.6.0/PatientProfiles/R/addCohortEvent.R |only PatientProfiles-1.6.0/PatientProfiles/R/addCohortIntersect.R | 760 +- PatientProfiles-1.6.0/PatientProfiles/R/addConceptEvent.R |only PatientProfiles-1.6.0/PatientProfiles/R/addConceptIntersect.R | 1381 ++-- PatientProfiles-1.6.0/PatientProfiles/R/addDeath.R | 370 - PatientProfiles-1.6.0/PatientProfiles/R/addDemographics.R | 966 +-- PatientProfiles-1.6.0/PatientProfiles/R/addDemographicsQuery.R | 1687 ++--- PatientProfiles-1.6.0/PatientProfiles/R/addEvent.R |only PatientProfiles-1.6.0/PatientProfiles/R/addIntersect.R | 1150 +-- PatientProfiles-1.6.0/PatientProfiles/R/addObservationPeriodId.R | 298 PatientProfiles-1.6.0/PatientProfiles/R/addTableIntersect.R | 783 +- PatientProfiles-1.6.0/PatientProfiles/R/benchmarkPatientProfiles.R | 506 - PatientProfiles-1.6.0/PatientProfiles/R/checks.R | 952 +-- PatientProfiles-1.6.0/PatientProfiles/R/documentationHelpers.R |only PatientProfiles-1.6.0/PatientProfiles/R/filterCohortId.R | 88 PatientProfiles-1.6.0/PatientProfiles/R/filterInObservation.R | 104 PatientProfiles-1.6.0/PatientProfiles/R/formats.R | 300 - PatientProfiles-1.6.0/PatientProfiles/R/mockPatientProfiles.R | 880 +- PatientProfiles-1.6.0/PatientProfiles/R/reexports-omopgenerics.R | 46 PatientProfiles-1.6.0/PatientProfiles/R/summariseResult.R | 1667 ++--- PatientProfiles-1.6.0/PatientProfiles/R/sysdata.rda |binary PatientProfiles-1.6.0/PatientProfiles/R/utilities.R | 407 - PatientProfiles-1.6.0/PatientProfiles/README.md | 906 +-- PatientProfiles-1.6.0/PatientProfiles/build/vignette.rds |binary PatientProfiles-1.6.0/PatientProfiles/inst/WORDLIST | 128 PatientProfiles-1.6.0/PatientProfiles/inst/doc/cohort-intersect.R | 426 - PatientProfiles-1.6.0/PatientProfiles/inst/doc/cohort-intersect.Rmd | 570 - PatientProfiles-1.6.0/PatientProfiles/inst/doc/cohort-intersect.html | 1638 ++--- PatientProfiles-1.6.0/PatientProfiles/inst/doc/demographics.R | 280 PatientProfiles-1.6.0/PatientProfiles/inst/doc/demographics.html | 1578 ++--- PatientProfiles-1.6.0/PatientProfiles/inst/doc/demographics.rmd | 408 - PatientProfiles-1.6.0/PatientProfiles/inst/doc/event.R |only PatientProfiles-1.6.0/PatientProfiles/inst/doc/event.html |only PatientProfiles-1.6.0/PatientProfiles/inst/doc/event.rmd |only PatientProfiles-1.6.0/PatientProfiles/man/PatientProfiles-package.Rd | 81 PatientProfiles-1.6.0/PatientProfiles/man/addAge.Rd | 136 PatientProfiles-1.6.0/PatientProfiles/man/addAgeQuery.Rd | 130 PatientProfiles-1.6.0/PatientProfiles/man/addBirthday.Rd | 27 PatientProfiles-1.6.0/PatientProfiles/man/addBirthdayQuery.Rd | 27 PatientProfiles-1.6.0/PatientProfiles/man/addCategories.Rd | 118 PatientProfiles-1.6.0/PatientProfiles/man/addCdmName.Rd | 60 PatientProfiles-1.6.0/PatientProfiles/man/addCohortEventDate.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/addCohortEventDays.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/addCohortIntersectCount.Rd | 143 PatientProfiles-1.6.0/PatientProfiles/man/addCohortIntersectDate.Rd | 131 PatientProfiles-1.6.0/PatientProfiles/man/addCohortIntersectDays.Rd | 141 PatientProfiles-1.6.0/PatientProfiles/man/addCohortIntersectField.Rd | 155 PatientProfiles-1.6.0/PatientProfiles/man/addCohortIntersectFlag.Rd | 139 PatientProfiles-1.6.0/PatientProfiles/man/addCohortName.Rd | 54 PatientProfiles-1.6.0/PatientProfiles/man/addConceptEventDate.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/addConceptEventDays.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/addConceptIntersectCount.Rd | 169 PatientProfiles-1.6.0/PatientProfiles/man/addConceptIntersectDate.Rd | 162 PatientProfiles-1.6.0/PatientProfiles/man/addConceptIntersectDays.Rd | 168 PatientProfiles-1.6.0/PatientProfiles/man/addConceptIntersectField.Rd | 197 PatientProfiles-1.6.0/PatientProfiles/man/addConceptIntersectFlag.Rd | 169 PatientProfiles-1.6.0/PatientProfiles/man/addConceptName.Rd | 82 PatientProfiles-1.6.0/PatientProfiles/man/addDateOfBirth.Rd | 104 PatientProfiles-1.6.0/PatientProfiles/man/addDateOfBirthQuery.Rd | 98 PatientProfiles-1.6.0/PatientProfiles/man/addDeathDate.Rd | 98 PatientProfiles-1.6.0/PatientProfiles/man/addDeathDays.Rd | 104 PatientProfiles-1.6.0/PatientProfiles/man/addDeathFlag.Rd | 104 PatientProfiles-1.6.0/PatientProfiles/man/addDemographics.Rd | 223 PatientProfiles-1.6.0/PatientProfiles/man/addDemographicsQuery.Rd | 214 PatientProfiles-1.6.0/PatientProfiles/man/addFutureObservation.Rd | 100 PatientProfiles-1.6.0/PatientProfiles/man/addFutureObservationQuery.Rd | 92 PatientProfiles-1.6.0/PatientProfiles/man/addInObservation.Rd | 106 PatientProfiles-1.6.0/PatientProfiles/man/addInObservationQuery.Rd | 102 PatientProfiles-1.6.0/PatientProfiles/man/addObservationPeriodId.Rd | 87 PatientProfiles-1.6.0/PatientProfiles/man/addObservationPeriodIdQuery.Rd | 81 PatientProfiles-1.6.0/PatientProfiles/man/addPriorObservation.Rd | 100 PatientProfiles-1.6.0/PatientProfiles/man/addPriorObservationQuery.Rd | 92 PatientProfiles-1.6.0/PatientProfiles/man/addSex.Rd | 70 PatientProfiles-1.6.0/PatientProfiles/man/addSexQuery.Rd | 66 PatientProfiles-1.6.0/PatientProfiles/man/addTableIntersectCount.Rd | 137 PatientProfiles-1.6.0/PatientProfiles/man/addTableIntersectDate.Rd | 131 PatientProfiles-1.6.0/PatientProfiles/man/addTableIntersectDays.Rd | 137 PatientProfiles-1.6.0/PatientProfiles/man/addTableIntersectField.Rd | 175 PatientProfiles-1.6.0/PatientProfiles/man/addTableIntersectFlag.Rd | 137 PatientProfiles-1.6.0/PatientProfiles/man/ageDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/ageGroupDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/ageImposeDayDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/ageImposeMonthDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/ageMissingDayDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/ageMissingMonthDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/ageNameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/ageUnitDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/allowDuplicatesDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/availableEstimates.Rd | 64 PatientProfiles-1.6.0/PatientProfiles/man/benchmarkPatientProfiles.Rd | 46 PatientProfiles-1.6.0/PatientProfiles/man/birthdayDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/birthdayNameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/cdmDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/censorDateDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/cohortDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/completeIntervalDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/conceptSetDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/dateOfBirthDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/dateOfBirthNameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/endDateColumn.Rd | 50 PatientProfiles-1.6.0/PatientProfiles/man/fieldDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/filterCohortId.Rd | 46 PatientProfiles-1.6.0/PatientProfiles/man/filterInObservation.Rd | 69 PatientProfiles-1.6.0/PatientProfiles/man/futureObservationDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/futureObservationNameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/futureObservationTypeDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/imposeDayDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/imposeMonthDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/inObservationDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/indexDateDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/missingAgeGroupValueDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/missingDayDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/missingMonthDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/missingSexValueDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/mockDisconnect.Rd | 28 PatientProfiles-1.6.0/PatientProfiles/man/mockPatientProfiles.Rd | 92 PatientProfiles-1.6.0/PatientProfiles/man/multipleEventsDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/nameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/nameObservationPeriodIdDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/nameStyleDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/nameStyleEventDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/orderDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/priorObservationDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/priorObservationNameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/priorObservationTypeDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/reexports.Rd | 34 PatientProfiles-1.6.0/PatientProfiles/man/sexDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/sexNameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/sourceConceptIdColumn.Rd | 50 PatientProfiles-1.6.0/PatientProfiles/man/standardConceptIdColumn.Rd | 50 PatientProfiles-1.6.0/PatientProfiles/man/startDateColumn.Rd | 50 PatientProfiles-1.6.0/PatientProfiles/man/summariseResult.Rd | 185 PatientProfiles-1.6.0/PatientProfiles/man/tableDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/tableNameDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/targetCohortIdDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/targetCohortTableDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/targetDateDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/targetEndDateDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/targetStartDateDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/typeDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/variableTypes.Rd | 68 PatientProfiles-1.6.0/PatientProfiles/man/windowDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/man/xDoc.Rd |only PatientProfiles-1.6.0/PatientProfiles/tests/manual/test-sqltest.R | 188 PatientProfiles-1.6.0/PatientProfiles/tests/spelling.R | 10 PatientProfiles-1.6.0/PatientProfiles/tests/testthat.R | 24 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/setup.R | 110 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addAttributes.R | 84 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addBirthDay.R | 318 - PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addCategories.R | 346 - PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addCohortEvent.R |only PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addCohortIntersect.R | 2094 +++--- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addConceptEvent.R |only PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addConceptIntersect.R | 899 +- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addDeath.R | 720 +- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addDemographics.R | 2997 +++++----- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addFutureObservation.R | 636 +- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addInObservation.R | 400 - PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addIntersect.R | 2588 ++++---- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addObservationPeriodId.R | 478 - PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addPriorObservation.R | 472 - PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addSex.R | 194 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-addTableIntersect.R | 1369 ++-- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-benchmarkPatientProfiles.R | 22 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-checks.R | 552 - PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-class.R | 158 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-columnType.R |only PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-filterCohortId.R | 54 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-filterInObservation.R | 167 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-format.R | 234 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-indexDate.R |only PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-mockPatientProfiles.R | 24 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-name.R | 216 PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-summariseResult.R | 2370 ++++--- PatientProfiles-1.6.0/PatientProfiles/tests/testthat/test-utilities.R | 36 PatientProfiles-1.6.0/PatientProfiles/vignettes/cohort-intersect.Rmd | 570 - PatientProfiles-1.6.0/PatientProfiles/vignettes/demographics.rmd | 408 - PatientProfiles-1.6.0/PatientProfiles/vignettes/event.rmd |only 196 files changed, 22728 insertions(+), 21611 deletions(-)
More information about PatientProfiles at CRAN
Permanent link
Title: Search Spaces for 'mlr3'
Description: Collection of search spaces for hyperparameter optimization in the
'mlr3' ecosystem. It features ready-to-use search spaces for many popular
machine learning algorithms. The search spaces are from scientific articles
and work for a wide range of data sets.
Author: Marc Becker [cre, aut] ,
Michel Lang [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3tuningspaces versions 0.6.0 dated 2025-05-16 and 0.7.0 dated 2026-07-25
DESCRIPTION | 11 +++++---- MD5 | 18 ++++++++------- NEWS.md | 5 ++++ R/TuningSpace.R | 41 +++++++++++++++++++++++++++--------- R/bibentries.R | 10 +++++++- R/tuning_spaces_rtdl.R |only README.md | 43 ++++++++++++++++++++------------------ man/TuningSpace.Rd | 2 - man/mlr_tuning_spaces_rtdl.Rd |only tests/testthat/helper.R | 1 tests/testthat/test_TuningSpace.R | 2 - 11 files changed, 87 insertions(+), 46 deletions(-)
More information about mlr3tuningspaces at CRAN
Permanent link
Title: Recommended Learners for 'mlr3'
Description: Recommended Learners for 'mlr3'. Extends 'mlr3' with
interfaces to essential machine learning packages on CRAN. This
includes, but is not limited to: (penalized) linear and logistic
regression, linear and quadratic discriminant analysis, k-nearest
neighbors, naive Bayes, support vector machines, and gradient
boosting.
Author: Michel Lang [aut] ,
Quay Au [aut] ,
Stefan Coors [aut] ,
Patrick Schratz [aut] ,
Marc Becker [cre, aut] ,
John Zobolas [aut] ,
Alexander Winterstetter [ctb],
Toby Hocking [ctb]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3learners versions 0.15.0 dated 2026-06-09 and 0.15.1 dated 2026-07-25
DESCRIPTION | 8 ++++---- MD5 | 16 ++++++++-------- NEWS.md | 4 ++++ man/mlr3learners-package.Rd | 1 + src/ranger_var.c | 9 ++++----- tests/testthat/test_classif_ranger.R | 4 ++-- tests/testthat/test_classif_svm.R | 2 +- tests/testthat/test_regr_ranger.R | 2 +- tests/testthat/test_regr_svm.R | 2 +- 9 files changed, 26 insertions(+), 22 deletions(-)
Title: Hyperband for 'mlr3'
Description: Successive Halving (Jamieson and Talwalkar (2016)
<doi:10.48550/arXiv.1502.07943>) and Hyperband (Li et al. 2018
<doi:10.48550/arXiv.1603.06560>) optimization algorithm for the mlr3
ecosystem. The implementation in mlr3hyperband features improved
scheduling and parallelizes the evaluation of configurations. The
package includes tuners for hyperparameter optimization in mlr3tuning
and optimizers for black-box optimization in bbotk.
Author: Marc Becker [aut, cre] ,
Sebastian Gruber [aut] ,
Jakob Richter [aut] ,
Julia Moosbauer [aut] ,
Bernd Bischl [aut]
Maintainer: Marc Becker <marcbecker@posteo.de>
Diff between mlr3hyperband versions 1.1.0 dated 2026-03-17 and 1.1.1 dated 2026-07-25
mlr3hyperband-1.1.0/mlr3hyperband/tests/testthat/helper_rush.R |only mlr3hyperband-1.1.1/mlr3hyperband/DESCRIPTION | 11 - mlr3hyperband-1.1.1/mlr3hyperband/MD5 | 39 +-- mlr3hyperband-1.1.1/mlr3hyperband/NEWS.md | 6 mlr3hyperband-1.1.1/mlr3hyperband/README.md | 4 mlr3hyperband-1.1.1/mlr3hyperband/build/partial.rdb |binary mlr3hyperband-1.1.1/mlr3hyperband/man/figures/logo.png |binary mlr3hyperband-1.1.1/mlr3hyperband/man/mlr3hyperband-package.Rd | 1 mlr3hyperband-1.1.1/mlr3hyperband/man/mlr_optimizers_async_successive_halving.Rd | 100 +++++---- mlr3hyperband-1.1.1/mlr3hyperband/man/mlr_optimizers_hyperband.Rd | 94 +++++---- mlr3hyperband-1.1.1/mlr3hyperband/man/mlr_optimizers_successive_halving.Rd | 86 ++++---- mlr3hyperband-1.1.1/mlr3hyperband/man/mlr_tuners_async_successive_halving.Rd | 71 +++--- mlr3hyperband-1.1.1/mlr3hyperband/man/mlr_tuners_hyperband.Rd | 102 +++++----- mlr3hyperband-1.1.1/mlr3hyperband/man/mlr_tuners_successive_halving.Rd | 94 +++++---- mlr3hyperband-1.1.1/mlr3hyperband/tests/testthat/helper.R | 6 mlr3hyperband-1.1.1/mlr3hyperband/tests/testthat/setup.R | 8 mlr3hyperband-1.1.1/mlr3hyperband/tests/testthat/teardown.R | 2 mlr3hyperband-1.1.1/mlr3hyperband/tests/testthat/test_TunerAsyncSuccessiveHalving.R | 52 ++--- mlr3hyperband-1.1.1/mlr3hyperband/tests/testthat/test_TunerBatchHyperband.R | 14 - mlr3hyperband-1.1.1/mlr3hyperband/tests/testthat/test_TunerBatchSuccessiveHalving.R | 14 - mlr3hyperband-1.1.1/mlr3hyperband/tests/testthat/test_nds_selection.R | 10 21 files changed, 392 insertions(+), 322 deletions(-)
Title: Philippine Standard Geographic Code
Description: Provides access to the Philippine Standard Geographic Code (PSGC),
an official classification system for geographic areas in the Philippines
published by the Philippine Statistics Authority (PSA). Includes area names,
geographic levels (Region, Province, City, Municipality, Sub-Municipality,
and Barangay), and census population figures across multiple PSA publication
releases. Offers utilities to look up individual codes, filter by geographic
level, track code changes across releases via a built-in crosswalk, and
retrieve population data in long or wide format.
Author: Bhas Abdulsamad [aut, cre, cph]
Maintainer: Bhas Abdulsamad <aeabdulsamad@gmail.com>
Diff between psgc versions 0.1.0 dated 2026-05-13 and 0.1.2 dated 2026-07-25
DESCRIPTION | 6 MD5 | 23 +- NAMESPACE | 1 NEWS.md | 30 +++ R/get-psgc-wide.R |only R/map-psgc.R | 142 ++++++-------- R/releases.R | 2 R/sysdata.rda |binary inst/doc/psgc.html | 357 ++++++++++++++---------------------- man/get_psgc_wide.Rd |only man/map_psgc.Rd | 8 tests/testthat/test-get-psgc-wide.R |only tests/testthat/test-map-psgc.R | 38 +++ tests/testthat/test-releases.R | 8 14 files changed, 308 insertions(+), 307 deletions(-)
Title: Point-and-Click GUI Client for 'dqcheckr'
Description: A graphical user interface for the 'dqcheckr' package. Provides a
point-and-click 'shiny' application for configuring dataset quality checks,
running them against recurring file deliveries, and browsing historical
check results — without writing any R code. The package is feature-complete
and is now maintained for corrections only; configuration features are
developed in 'dqcheckr' itself, which offers a script-based workflow that
does not need this interface.
Author: Mick Mioduszewski [aut, cre]
Maintainer: Mick Mioduszewski <mick@mioduszewski.net>
Diff between dqcheckrGUI versions 0.2.0 dated 2026-06-29 and 0.2.2 dated 2026-07-25
DESCRIPTION | 21 - MD5 | 62 ++- NAMESPACE | 2 NEWS.md | 143 ++++++++ R/dqcheckrGUI-package.R | 8 README.md | 7 inst/app/R/config_io.R | 219 +++++++++++-- inst/app/R/server_global.R | 29 + inst/app/R/server_history.R | 139 ++++++-- inst/app/R/server_run.R | 96 ++++-- inst/app/R/server_step3_csv.R | 233 ++++++++++++-- inst/app/R/server_wizard.R | 322 +++++++++++++------- inst/app/R/ui_datasets.R | 23 + inst/app/R/ui_history.R | 1 inst/app/R/ui_wizard.R | 4 inst/app/R/utils.R | 334 +++++++++++++++++++- inst/app/app.R | 62 ++- inst/doc/dqcheckrGUI.Rmd | 12 inst/doc/dqcheckrGUI.html | 12 man/dqcheckrGUI-package.Rd | 9 tests/testthat/test-config-io.R | 218 +++++++++++++ tests/testthat/test-config-lock.R |only tests/testthat/test-drift-launch.R |only tests/testthat/test-encoding.R |only tests/testthat/test-fwf-column-types.R |only tests/testthat/test-fwf-ruler.R |only tests/testthat/test-history.R | 61 +++ tests/testthat/test-read-dataset-known.R |only tests/testthat/test-rule-overrides.R |only tests/testthat/test-run-panel.R |only tests/testthat/test-run-stop.R |only tests/testthat/test-sniff-csv.R |only tests/testthat/test-step5-meanshift.R |only tests/testthat/test-ui-behavior.R | 26 + tests/testthat/test-utils.R | 494 ++++++++++++++++++++++++++++++- tests/testthat/test-wizard-edit.R | 154 +++++++++ tests/testthat/test-wizard-step3.R |only vignettes/dqcheckrGUI.Rmd | 12 38 files changed, 2358 insertions(+), 345 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2026-06-15 1.31.2
2025-08-19 1.31.1
2025-03-18 1.31.0
2024-01-17 1.30.4
2023-08-30 1.30.3
2023-03-22 1.30.2
2022-11-16 1.30.1
2022-05-02 1.30.0
2022-04-07 1.29.1
2022-01-27 1.29.0
2021-11-10 1.28.2
2021-08-13 1.28.1
2021-04-05 1.28.0
2021-02-02 1.27.7
2020-09-15 1.27.5
2020-07-22 1.27.0
2020-03-12 1.26.3
2020-02-10 1.26.2
2019-06-07 1.26.1
2019-04-02 1.26.0
2019-01-10 1.25.0
2018-09-12 1.24.0
2018-06-22 1.23.0
2018-05-02 1.22.0
2018-02-02 1.20.0
2017-11-14 1.19.0
2017-10-12 1.18.4
2017-08-23 1.18.0
2017-06-06 1.17.0
2017-04-17 1.16.0
2017-03-23 1.15.2
2017-02-23 1.15.0
2017-01-20 1.14.4
2016-11-22 1.14.2
2016-08-10 1.12.2
2016-06-30 1.10.4
2016-04-07 1.9.4
2016-02-22 1.8.0
2015-12-14 1.7.3
2015-11-19 1.6.1
2015-08-04 1.4.2
2015-06-18 1.3.2
2015-05-26 1.2.1
2015-04-20 1.1.1
2015-04-16 1.1.0
2015-04-04 1.0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-29 2.0.3
2023-10-12 2.0.1
2023-01-26 1.13.0
2022-08-22 1.12.3
2022-01-18 1.12.2
2021-11-04 1.12.1
2021-09-17 1.12.0
2021-07-13 1.11.2
2021-06-30 1.11.1
2021-04-23 1.11.0
2020-12-14 1.10
2020-07-29 1.9.0
2020-05-19 1.8.5
2020-02-23 1.8.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-06-09 2.16.0
2023-10-14 2.15.3
2023-01-31 2.15.1
2022-01-24 2.14.0
2021-07-01 2.13.3
2021-06-26 2.13.2
2021-05-05 2.13.0
2021-02-11 2.12.6
2020-09-16 2.12.4
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-07-29 1.3.5
2024-04-04 1.3.4
2023-01-26 1.3.3
2022-02-07 1.3.2
2021-05-06 1.3.1
2020-11-27 1.3.0
Title: Client for Statistics Canada's Open Economic Data
Description: Provides an R client for Statistics Canada's Web Data Service.
Users can describe the data they need in natural language, search the
official table catalogue, and download complete data tables in English or
French as data frames. Tables formerly known as CANSIM tables are
identified by Product IDs. Warin (2024)
<doi:10.5070/T5.1868>.
Author: Thierry Warin [aut, cre]
Maintainer: Thierry Warin <thierry.warin@hec.ca>
Diff between statcanR versions 0.3.0 dated 2026-07-17 and 0.3.9 dated 2026-07-25
DESCRIPTION | 9 - MD5 | 34 ++-- NAMESPACE | 3 NEWS.md | 159 ++++++++++++++++++++++ R/statCanR.R | 86 ++++++++++-- R/statcan_chat.R |only R/statcan_find.R | 211 +++++++++++++++++++++++++---- R/statcan_search.R | 51 ++++++- README.md | 234 +++++++++++++++++++++++++++++++-- inst/WORDLIST |only inst/doc/getting-started.R | 20 ++ inst/doc/getting-started.Rmd | 46 ++++++ inst/doc/getting-started.html | 124 +++++++++++++---- man/statcan_chat.Rd |only man/statcan_chat_continue.Rd |only tests/testthat/setup.R |only tests/testthat/test-download-helpers.R | 138 +++++++++++++++++++ tests/testthat/test-statcan-chat.R |only tests/testthat/test-statcan-find.R | 49 ++++++ tests/testthat/test-statcan-search.R | 27 +++ vignettes/getting-started.Rmd | 46 ++++++ 21 files changed, 1133 insertions(+), 104 deletions(-)
Title: Tide Heights
Description: Calculates tide heights based on tide station harmonics. It
includes the harmonics data for 637 US stations. The harmonics data
was converted from
<https://github.com/poissonconsulting/rtide/blob/main/data-raw/harmonics-dwf-20151227-free.tar.bz2>,
NOAA web site data processed by David Flater for 'XTide'. The code to
calculate tide heights from the harmonics is based on 'XTide'.
Author: Joe Thorley [aut] ,
Luke Miller [aut, cre],
Abram Fleishman [aut],
Poisson Consulting [cph]
Maintainer: Luke Miller <contact@lukemiller.org>
Diff between rtide versions 0.0.11 dated 2024-11-20 and 0.0.12 dated 2026-07-25
DESCRIPTION | 12 ++++++------ MD5 | 12 ++++++------ NEWS.md | 4 ++++ README.md | 4 +++- man/figures/README-unnamed-chunk-6-1.png |binary man/rtide-package.Rd | 1 + tests/testthat/test-tide-height.R | 2 +- 7 files changed, 21 insertions(+), 14 deletions(-)
Title: Draw Beautiful Symbol Nomenclature for Glycans
Description: A 'ggplot2'-native plotting engine for drawing reproducible beautiful
Symbol Nomenclature for Glycans (SNFG) glycan cartoons from glycan structure
objects or text notations, with support for batch export, structural
highlighting, and deep appearance customization. It follows the SNFG
specification described at <https://www.ncbi.nlm.nih.gov/glycans/snfg.html>.
Author: Bin Fu [aut, cre, cph] ,
Xisong Feng [aut]
Maintainer: Bin Fu <23110220018@m.fudan.edu.cn>
Diff between glydraw versions 0.6.3 dated 2026-07-14 and 0.7.0 dated 2026-07-25
glydraw-0.6.3/glydraw/R/glydraw.R |only glydraw-0.6.3/glydraw/tests/testthat/test-glydraw.R |only glydraw-0.7.0/glydraw/DESCRIPTION | 10 glydraw-0.7.0/glydraw/MD5 | 72 +++-- glydraw-0.7.0/glydraw/NAMESPACE | 18 + glydraw-0.7.0/glydraw/NEWS.md | 21 + glydraw-0.7.0/glydraw/R/draw-cartoon.R |only glydraw-0.7.0/glydraw/R/export-cartoons.R |only glydraw-0.7.0/glydraw/R/geom-glycan.R |only glydraw-0.7.0/glydraw/R/geom-node-glycan.R |only glydraw-0.7.0/glydraw/R/ggplot2-compat.R |only glydraw-0.7.0/glydraw/R/glycan-grob.R |only glydraw-0.7.0/glydraw/R/glydraw-style.R |only glydraw-0.7.0/glydraw/R/guide-glycan.R |only glydraw-0.7.0/glydraw/R/internal-cartoon.R | 33 ++ glydraw-0.7.0/glydraw/R/internal-coordinates.R | 55 +++ glydraw-0.7.0/glydraw/R/internal-data.R | 5 glydraw-0.7.0/glydraw/R/internal-render.R | 18 - glydraw-0.7.0/glydraw/R/save-cartoon.R |only glydraw-0.7.0/glydraw/R/scale-glycan.R |only glydraw-0.7.0/glydraw/README.md | 46 +++ glydraw-0.7.0/glydraw/build/vignette.rds |binary glydraw-0.7.0/glydraw/inst/doc/ggplot2-extension.R |only glydraw-0.7.0/glydraw/inst/doc/ggplot2-extension.Rmd |only glydraw-0.7.0/glydraw/inst/doc/ggplot2-extension.html |only glydraw-0.7.0/glydraw/inst/doc/glydraw.html | 2 glydraw-0.7.0/glydraw/man/draw_cartoon.Rd | 8 glydraw-0.7.0/glydraw/man/export_cartoons.Rd | 8 glydraw-0.7.0/glydraw/man/figures/README-ggplot2-extension-1.png |only glydraw-0.7.0/glydraw/man/geom_glycan.Rd |only glydraw-0.7.0/glydraw/man/geom_node_glycan.Rd |only glydraw-0.7.0/glydraw/man/glycanGrob.Rd |only glydraw-0.7.0/glydraw/man/glydraw_style.Rd |only glydraw-0.7.0/glydraw/man/guide_glycan.Rd |only glydraw-0.7.0/glydraw/man/hjust_red_end.Rd |only glydraw-0.7.0/glydraw/man/print.glydraw_cartoon.Rd | 2 glydraw-0.7.0/glydraw/man/save_cartoon.Rd | 2 glydraw-0.7.0/glydraw/man/scale_x_glycan.Rd |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/cases/double-core-fuc-without-linkages.svg |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/cases/ggplot2-glycan-annotations.svg |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/cases/ggplot2-glycan-sizes.svg |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/cases/glycan-legend-labels.svg |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/cases/glycan-x-axis-labels.svg |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/cases/justified-vertical-ggplot2-glycans.svg |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/geom-glycan.md |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/guide-glycan.md |only glydraw-0.7.0/glydraw/tests/testthat/_snaps/scale-glycan.md |only glydraw-0.7.0/glydraw/tests/testthat/helper-glycan-justification.R |only glydraw-0.7.0/glydraw/tests/testthat/test-cases.R | 143 ++++++++++ glydraw-0.7.0/glydraw/tests/testthat/test-draw-cartoon.R |only glydraw-0.7.0/glydraw/tests/testthat/test-export-cartoons.R |only glydraw-0.7.0/glydraw/tests/testthat/test-geom-glycan.R |only glydraw-0.7.0/glydraw/tests/testthat/test-geom-node-glycan.R |only glydraw-0.7.0/glydraw/tests/testthat/test-glycan-grob.R |only glydraw-0.7.0/glydraw/tests/testthat/test-guide-glycan.R |only glydraw-0.7.0/glydraw/tests/testthat/test-save-cartoon.R |only glydraw-0.7.0/glydraw/tests/testthat/test-scale-glycan.R |only glydraw-0.7.0/glydraw/vignettes/ggplot2-extension.Rmd |only 58 files changed, 399 insertions(+), 44 deletions(-)
Title: DBI Package for the DuckDB Database Management System
Description: The DuckDB project is an embedded analytical data management
system with support for the Structured Query Language (SQL). This
package includes all of DuckDB and an R Database Interface (DBI)
connector.
Author: Hannes Muehleisen [aut] ,
Mark Raasveldt [aut] ,
Kirill Mueller [cre] ,
Stichting DuckDB Foundation [cph],
Apache Software Foundation [cph],
PostgreSQL Global Development Group [cph],
The Regents of the University of California [cph],
Cameron Desrocher [...truncated...]
Maintainer: Kirill Mueller <kirill@cynkra.com>
Diff between duckdb versions 1.5.4.3 dated 2026-07-10 and 1.5.5 dated 2026-07-25
duckdb-1.5.4.3/duckdb/R/storage-config.R |only duckdb-1.5.4.3/duckdb/R/storage-locations.R |only duckdb-1.5.4.3/duckdb/man/duckdb_storage_config.Rd |only duckdb-1.5.4.3/duckdb/tests/testthat/_snaps/storage-config.md |only duckdb-1.5.4.3/duckdb/tests/testthat/test-secret_directory.R |only duckdb-1.5.4.3/duckdb/tests/testthat/test-storage-config.R |only duckdb-1.5.4.3/duckdb/tests/testthat/test-storage-markers.R |only duckdb-1.5.4.3/duckdb/tests/testthat/test-storage-resolve.R |only duckdb-1.5.5/duckdb/DESCRIPTION | 6 duckdb-1.5.5/duckdb/MD5 | 96 +-- duckdb-1.5.5/duckdb/NAMESPACE | 2 duckdb-1.5.5/duckdb/NEWS.md | 52 + duckdb-1.5.5/duckdb/R/Connection.R | 25 duckdb-1.5.5/duckdb/R/Driver.R | 206 ++++++ duckdb-1.5.5/duckdb/R/Result.R | 14 duckdb-1.5.5/duckdb/R/cpp11.R | 8 duckdb-1.5.5/duckdb/R/duckdb.R | 11 duckdb-1.5.5/duckdb/R/extensions.R | 112 +++ duckdb-1.5.5/duckdb/R/rethrow-gen.R | 14 duckdb-1.5.5/duckdb/R/storage-home.R |only duckdb-1.5.5/duckdb/R/storage-status.R |only duckdb-1.5.5/duckdb/R/storage.R | 302 ++++----- duckdb-1.5.5/duckdb/R/version.R | 2 duckdb-1.5.5/duckdb/man/duckdb.Rd | 111 +++ duckdb-1.5.5/duckdb/man/duckdb_connection-class.Rd | 20 duckdb-1.5.5/duckdb/man/duckdb_driver-class.Rd | 22 duckdb-1.5.5/duckdb/man/duckdb_result-class.Rd | 16 duckdb-1.5.5/duckdb/man/duckdb_result_arrow-class.Rd | 10 duckdb-1.5.5/duckdb/man/duckdb_storage.Rd | 302 ++++----- duckdb-1.5.5/duckdb/src/Makevars.win | 11 duckdb-1.5.5/duckdb/src/cpp11.cpp | 16 duckdb-1.5.5/duckdb/src/database.cpp | 3 duckdb-1.5.5/duckdb/src/duckdb.tar.xz |binary duckdb-1.5.5/duckdb/src/include/rapi.hpp | 6 duckdb-1.5.5/duckdb/src/include/rfuns_extension.hpp | 2 duckdb-1.5.5/duckdb/src/register.cpp | 99 ++- duckdb-1.5.5/duckdb/src/rfuns.cpp | 38 + duckdb-1.5.5/duckdb/src/statement.cpp | 33 + duckdb-1.5.5/duckdb/src/utils.cpp | 21 duckdb-1.5.5/duckdb/tests/testthat/_snaps/extensions-libcxx.md |only duckdb-1.5.5/duckdb/tests/testthat/_snaps/storage-home.md |only duckdb-1.5.5/duckdb/tests/testthat/_snaps/storage-status.md |only duckdb-1.5.5/duckdb/tests/testthat/helper-DBItest.R | 2 duckdb-1.5.5/duckdb/tests/testthat/test-DBItest.R | 10 duckdb-1.5.5/duckdb/tests/testthat/test-duckdb-extensions.R | 3 duckdb-1.5.5/duckdb/tests/testthat/test-extension_path.R | 5 duckdb-1.5.5/duckdb/tests/testthat/test-extensions-libcxx.R |only duckdb-1.5.5/duckdb/tests/testthat/test-fetch_arrow.R | 16 duckdb-1.5.5/duckdb/tests/testthat/test-register_arrow.R | 52 + duckdb-1.5.5/duckdb/tests/testthat/test-rfuns-minmax.R |only duckdb-1.5.5/duckdb/tests/testthat/test-rfuns-mixed-types.R |only duckdb-1.5.5/duckdb/tests/testthat/test-rfuns-narm.R |only duckdb-1.5.5/duckdb/tests/testthat/test-rfuns-sum.R |only duckdb-1.5.5/duckdb/tests/testthat/test-storage-cli-e2e.R | 24 duckdb-1.5.5/duckdb/tests/testthat/test-storage-e2e.R | 91 ++ duckdb-1.5.5/duckdb/tests/testthat/test-storage-home.R | 315 ++++++++-- duckdb-1.5.5/duckdb/tests/testthat/test-storage-message-once.R |only duckdb-1.5.5/duckdb/tests/testthat/test-storage-secret.R |only duckdb-1.5.5/duckdb/tests/testthat/test-storage-shared-home.R |only duckdb-1.5.5/duckdb/tests/testthat/test-storage-status.R |only 60 files changed, 1574 insertions(+), 504 deletions(-)