Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-30 2.3.1
2019-03-01 2.1.0
2019-02-01 2.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-30 0.1.2
2020-11-24 0.1.1
2020-09-22 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-09-23 1.2.1
2022-09-10 1.2.0
2021-05-03 1.1.1
2019-11-13 1.0.2
2019-09-01 1.0.1
2019-08-30 1.0.0
2019-02-12 0.7.2
2019-01-21 0.7.1
2018-12-13 0.7.0
2018-09-11 0.6.0
2018-01-03 0.5.0
2017-05-23 0.4.0
2017-01-22 0.3.0
2016-12-28 0.2.3.3
2016-12-21 0.2.3.2
2016-09-30 0.2.3.1
2016-07-17 0.2.3
2016-04-03 0.2.1
2016-03-25 0.2.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-03-02 1.0.7
2020-02-21 1.0.6
2020-02-20 1.0.5
Title: Distance and Similarity Measures
Description: Provides an extensible framework for the efficient calculation of auto- and cross-proximities, along with implementations of the most popular ones.
Author: David Meyer [aut, cre] ,
Christian Buchta [aut]
Maintainer: David Meyer <David.Meyer@R-project.org>
Diff between proxy versions 0.4-28 dated 2025-12-11 and 0.4-29 dated 2025-12-29
DESCRIPTION | 6 +++--- MD5 | 6 +++--- inst/doc/overview.pdf |binary src/apply.c | 12 ++++++------ 4 files changed, 12 insertions(+), 12 deletions(-)
Title: Additional Univariate and Multivariate Distributions
Description: Density, distribution function, quantile function
and random generation for a number of univariate
and multivariate distributions. This package implements the
following distributions: Bernoulli, beta-binomial, beta-negative
binomial, beta prime, Bhattacharjee, Birnbaum-Saunders,
bivariate normal, bivariate Poisson, categorical, Dirichlet,
Dirichlet-multinomial, discrete gamma, discrete Laplace,
discrete normal, discrete uniform, discrete Weibull, Frechet,
gamma-Poisson, generalized extreme value, Gompertz,
generalized Pareto, Gumbel, half-Cauchy, half-normal, half-t,
Huber density, inverse chi-squared, inverse-gamma, Kumaraswamy,
Laplace, location-scale t, logarithmic, Lomax, multivariate
hypergeometric, multinomial, negative hypergeometric,
non-standard beta, normal mixture, Poisson mixture, Pareto,
power, reparametrized beta, Rayleigh, shifted Gompertz, Skellam,
slash, triangular, truncated binomial, truncated normal,
truncated Poisson, Tukey lambda, Wald, zero-inflated binomial,
zer [...truncated...]
Author: Tymoteusz Wolodzko [aut, cre]
Maintainer: ORPHANED
Diff between extraDistr versions 1.10.0 dated 2023-11-30 and 1.10.0.1 dated 2025-12-29
DESCRIPTION | 21 ++++++++++++++------- MD5 | 8 ++++---- R/negative-hypergeometric-distribution.R | 2 +- man/NegHyper.Rd | 2 +- man/extraDistr-package.Rd | 12 +++++++++++- 5 files changed, 31 insertions(+), 14 deletions(-)
Title: Complex Hierarchy Questions in Network Meta-Analysis
Description: Derives the most frequent hierarchies along with their probability of occurrence. One can also define complex hierarchy criteria and calculate their probability. Methodology based on Papakonstantinou et al. (2021) <DOI:10.21203/rs.3.rs-858140/v1>.
Author: Adriani Nikolakopoulou [aut] ,
Guido Schwarzer [aut] ,
Theodoros Papakonstantinou [aut, cre]
Maintainer: Theodoros Papakonstantinou <dev@tpapak.com>
Diff between nmarank versions 0.3-0 dated 2023-02-24 and 0.3-0.1 dated 2025-12-29
DESCRIPTION | 17 +++++++++-------- MD5 | 6 +++--- R/nmarank.R | 4 ++-- man/nmarank.Rd | 4 ++-- 4 files changed, 16 insertions(+), 15 deletions(-)
Title: Maximum Likelihood Estimation and Related Tools
Description: Functions for Maximum Likelihood (ML) estimation, non-linear
optimization, and related tools. It includes a unified way to call
different optimizers, and classes and methods to handle the results from
the Maximum Likelihood viewpoint. It also includes a number of convenience
tools for testing and developing your own models.
Author: Ott Toomet [aut, cre],
Arne Henningsen [aut],
Spencer Graves [ctb],
Yves Croissant [ctb],
David Hugh-Jones [ctb],
Luca Scrucca [ctb]
Maintainer: Ott Toomet <otoomet@gmail.com>
Diff between maxLik versions 1.5-2.1 dated 2024-03-24 and 1.5-2.2 dated 2025-12-29
DESCRIPTION | 6 +++--- MD5 | 20 ++++++++++---------- build/partial.rdb |binary build/vignette.rds |binary inst/CITATION | 16 ++++------------ inst/doc/intro-to-maximum-likelihood.pdf |binary inst/doc/stochastic-gradient-maxLik.pdf |binary inst/doc/using-maxlik.pdf |binary man/activePar.Rd | 2 +- man/nObs.Rd | 2 +- man/nParam.Rd | 2 +- 11 files changed, 20 insertions(+), 28 deletions(-)
Title: Automatic Description of Factorial Analysis
Description: Brings a set of tools to help and automatically realise the description of principal component analyses (from 'FactoMineR' functions). Detection of existing outliers, identification of the informative components, graphical views and dimensions description are performed threw dedicated functions. The Investigate() function performs all these functions in one, and returns the result as a report document (Word, PDF or HTML).
Author: Simon Thuleau [aut],
Francois Husson [aut, cre]
Maintainer: Francois Husson <francois.husson@institut-agro.fr>
Diff between FactoInvestigate versions 1.9 dated 2023-11-27 and 1.9.1 dated 2025-12-29
DESCRIPTION | 18 +++++++++++++----- MD5 | 14 +++++++------- build/partial.rdb |binary man/Investigate.Rd | 8 ++++---- man/classif.Rd | 6 +++--- man/description.Rd | 8 ++++---- man/factoGraph.Rd | 8 ++++---- man/graphHab.Rd | 8 ++++---- 8 files changed, 39 insertions(+), 31 deletions(-)
More information about FactoInvestigate at CRAN
Permanent link
Title: Open Source OCR Engine
Description: Bindings to 'Tesseract':
a powerful optical character recognition (OCR) engine that supports over 100 languages.
The engine is highly configurable in order to tune the detection algorithms and
obtain the best possible results.
Author: Jeroen Ooms [aut, cre]
Maintainer: Jeroen Ooms <jeroenooms@gmail.com>
Diff between tesseract versions 5.2.3 dated 2025-03-23 and 5.2.4 dated 2025-12-29
DESCRIPTION | 10 +++++----- MD5 | 10 +++++----- NEWS | 3 +++ build/vignette.rds |binary configure | 14 ++++---------- inst/doc/intro.html | 32 ++++++++++++++++---------------- 6 files changed, 33 insertions(+), 36 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2023-04-04 0.3.0
2022-07-21 0.2.7
2022-07-14 0.2.6
2021-10-11 0.2.5
Title: A Logging Utility for R
Description: Provides a simple yet powerful logging utility. Based loosely on
log4j, futile.logger takes advantage of R idioms to make logging a
convenient and easy to use replacement for cat and print statements.
Author: Brian Lee Yung Rowe [aut, cre]
Maintainer: Brian Lee Yung Rowe <r@zatonovo.com>
Diff between futile.logger versions 1.4.3 dated 2016-07-10 and 1.4.9 dated 2025-12-29
futile.logger-1.4.3/futile.logger/tests/testthat |only futile.logger-1.4.3/futile.logger/tests/testthat.R |only futile.logger-1.4.9/futile.logger/DESCRIPTION | 20 - futile.logger-1.4.9/futile.logger/MD5 | 47 +- futile.logger-1.4.9/futile.logger/R/appender.R | 130 +++++++- futile.logger-1.4.9/futile.logger/R/futile.logger-package.R | 5 futile.logger-1.4.9/futile.logger/R/layout.R | 159 ++++++++-- futile.logger-1.4.9/futile.logger/R/logger.R | 133 ++++++-- futile.logger-1.4.9/futile.logger/R/util.R |only futile.logger-1.4.9/futile.logger/README.md | 41 ++ futile.logger-1.4.9/futile.logger/man/flog.appender.Rd | 43 ++ futile.logger-1.4.9/futile.logger/man/flog.carp.Rd | 2 futile.logger-1.4.9/futile.logger/man/flog.layout.Rd | 38 ++ futile.logger-1.4.9/futile.logger/man/flog.logger.Rd | 88 +++-- futile.logger-1.4.9/futile.logger/man/flog.remove.Rd | 2 futile.logger-1.4.9/futile.logger/man/flog.threshold.Rd | 2 futile.logger-1.4.9/futile.logger/man/ftry.Rd | 20 + futile.logger-1.4.9/futile.logger/man/futile.logger-package.Rd | 18 - futile.logger-1.4.9/futile.logger/man/logger.options.Rd | 15 futile.logger-1.4.9/futile.logger/man/prepare_arg.Rd |only futile.logger-1.4.9/futile.logger/man/scat.Rd | 5 futile.logger-1.4.9/futile.logger/tests/test-all.R |only futile.logger-1.4.9/futile.logger/tests/testit |only 23 files changed, 606 insertions(+), 162 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-14 3.1.2.0.1
2014-11-10 3.1.2.0
2014-07-22 3.1.1
2014-04-16 3.1.0.1
2014-04-11 3.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-05-27 1.2.1
2021-05-16 1.2.0
2020-11-20 1.1.0
2020-09-28 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-04-13 0.2.0
2019-03-29 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-17 0.0-2
2021-12-15 0.0-1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-01-11 0.1.6
2020-12-15 0.1.5
2017-01-13 0.1.1
2017-01-10 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-07-05 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-03-29 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-08-24 0.9.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-03 1.3
2019-01-26 1.2
2018-01-10 1.1
2017-11-20 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2024-03-05 1.1.1
2022-08-29 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-22 0.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-07-28 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-06-13 0.2.6.1
2020-01-13 0.2.5.8
2018-12-08 0.2.5.7
2018-02-11 0.2.5.4
2017-07-30 0.2.5.3
2017-07-16 0.2.5.2
2017-04-19 0.2.5.1
2017-03-22 0.2.5
2017-02-22 0.2.4.1
2016-08-10 0.2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-10-19 0.3.3.7
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2019-03-05 0.3.3.4
2018-03-27 0.3.3.3
2017-11-25 0.3.3.2
2017-10-07 0.3.3.1
2017-04-19 0.3.3
2016-12-26 0.3.2
2016-03-15 0.3.0
2015-02-04 0.2.0
2013-11-06 0.1.1
2012-11-26 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-26 0.1.2
2020-05-15 0.1.1
2020-05-06 0.1.0
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2021-10-15 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2018-10-28 1.0.0
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2021-06-23 1.1.0-0
2020-08-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-27 1.1.0
2022-01-04 1.0.0
2020-07-14 0.0.2
2020-07-01 0.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
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2022-01-29 2.1.0
2022-01-06 2.0.0
2021-08-07 1.3.1
2021-07-23 1.3
2021-01-10 1.1
2020-10-28 1.0
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2020-12-10 1.1
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2017-04-14 1.2
2017-03-27 1.1
2017-03-16 1.0
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2020-04-16 1.0.1
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2019-05-17 0.8.2
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2019-03-09 2.3.6
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2018-08-18 2.2.4
2018-08-15 2.2.3
2018-05-21 2.1.3
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2018-05-29 1.0.3
2018-03-14 1.0.2
2017-11-26 1.0.1
2017-10-24 1.0.0
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2021-07-16 1.0.3
2021-06-30 1.0.2
2021-02-23 1.0.1
2021-02-12 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-07-13 0.4.0.1
2020-03-25 0.4.0
2019-11-28 0.3.0
2019-10-06 0.2.0.1
2019-10-02 0.2.0
2019-06-06 0.1.3
2019-04-14 0.1.2
2019-01-24 0.1.1
2019-01-02 0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-06-06 0.9.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2017-04-03 0.1.2
2015-05-14 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-12 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-03-21 3.0.1
2019-01-11 3.0.0
2018-11-14 2.0.0
2018-07-23 1.0.2
2018-06-03 1.0.1
2018-01-05 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-12-05 1.7.4
2021-05-18 1.7.3
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2019-01-07 0.0.6
2018-05-08 0.0.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-10-02 2.0.2
2020-09-29 2.0.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-02-11 0.2.2
2019-01-10 0.2.1
2018-09-10 0.2.0
2018-05-02 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-07-16 1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2022-05-10 2.2
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-05 0.6.1
2018-07-18 0.6.0
2018-07-05 0.5.9
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-08-28 1.1.9
2019-06-12 1.1.8
2018-05-17 1.1.5
2018-03-26 1.1.0
2018-02-07 0.9.10
2018-01-12 0.9.8
2018-01-08 0.9.7
2017-12-19 0.9.6
2017-12-18 0.9.5
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-03-06 0.2.0
2019-12-06 0.1.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2021-12-02 0.1.2
2020-07-08 0.1.1
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-01-13 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2020-05-07 0.1.3
2017-12-15 0.1.1
2017-12-15 0.1.2
Title: Extension of `data.frame`
Description: Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. Offers a natural and flexible syntax, for faster development.
Author: Tyson Barrett [aut, cre] ,
Matt Dowle [aut],
Arun Srinivasan [aut],
Jan Gorecki [aut],
Michael Chirico [aut] ,
Toby Hocking [aut] ,
Benjamin Schwendinger [aut] ,
Ivan Krylov [aut] ,
Pasha Stetsenko [ctb],
Tom Short [ctb],
Steve Lianoglou [ctb],
Eduar [...truncated...]
Maintainer: Tyson Barrett <t.barrett88@gmail.com>
Diff between data.table versions 1.17.8 dated 2025-07-10 and 1.18.0 dated 2025-12-24
DESCRIPTION | 40 MD5 | 406 - NAMESPACE | 18 NEWS.md | 463 + R/IDateTime.R | 38 R/as.data.table.R | 64 R/between.R | 16 R/bmerge.R | 19 R/cedta.R | 24 R/data.table.R | 413 - R/duplicated.R | 2 R/fcast.R | 88 R/fdroplevels.R | 7 R/fmelt.R | 22 R/foverlaps.R | 33 R/fread.R | 36 R/froll.R | 227 R/frollapply.R |only R/fwrite.R | 17 R/groupingsets.R | 26 R/helpers.R |only R/like.R | 1 R/merge.R | 38 R/mergelist.R |only R/onAttach.R | 4 R/onLoad.R | 55 R/openmp-utils.R | 5 R/print.data.table.R | 43 R/setkey.R | 42 R/setops.R | 16 R/test.data.table.R | 98 R/utils.R | 21 R/wrappers.R | 11 R/xts.R | 6 README.md | 23 build/vignette.rds |binary configure | 1 inst/cc | 4 inst/doc/datatable-benchmarking.R |only inst/doc/datatable-benchmarking.Rmd | 6 inst/doc/datatable-benchmarking.html | 9 inst/doc/datatable-faq.R | 25 inst/doc/datatable-faq.Rmd | 13 inst/doc/datatable-faq.html | 15 inst/doc/datatable-fread-and-fwrite.R |only inst/doc/datatable-fread-and-fwrite.Rmd |only inst/doc/datatable-fread-and-fwrite.html |only inst/doc/datatable-importing.R |only inst/doc/datatable-importing.Rmd | 9 inst/doc/datatable-importing.html | 12 inst/doc/datatable-intro.R | 30 inst/doc/datatable-intro.Rmd | 14 inst/doc/datatable-intro.html | 15 inst/doc/datatable-joins.R | 129 inst/doc/datatable-joins.Rmd | 210 inst/doc/datatable-joins.html | 232 inst/doc/datatable-keys-fast-subset.R | 27 inst/doc/datatable-keys-fast-subset.Rmd | 10 inst/doc/datatable-keys-fast-subset.html | 19 inst/doc/datatable-programming.R | 61 inst/doc/datatable-programming.Rmd | 70 inst/doc/datatable-programming.html | 114 inst/doc/datatable-reference-semantics.R | 41 inst/doc/datatable-reference-semantics.Rmd | 32 inst/doc/datatable-reference-semantics.html | 35 inst/doc/datatable-reshape.R | 53 inst/doc/datatable-reshape.Rmd | 41 inst/doc/datatable-reshape.html | 225 inst/doc/datatable-sd-usage.R | 25 inst/doc/datatable-sd-usage.Rmd | 6 inst/doc/datatable-sd-usage.html | 13 inst/doc/datatable-secondary-indices-and-auto-indexing.R | 38 inst/doc/datatable-secondary-indices-and-auto-indexing.Rmd | 40 inst/doc/datatable-secondary-indices-and-auto-indexing.html | 60 inst/po/es/LC_MESSAGES/R-data.table.mo |binary inst/po/es/LC_MESSAGES/data.table.mo |binary inst/po/fr/LC_MESSAGES/R-data.table.mo |binary inst/po/fr/LC_MESSAGES/data.table.mo |binary inst/po/pt_BR/LC_MESSAGES/R-data.table.mo |binary inst/po/pt_BR/LC_MESSAGES/data.table.mo |binary inst/po/ru/LC_MESSAGES/R-data.table.mo |binary inst/po/ru/LC_MESSAGES/data.table.mo |binary inst/po/zh_CN/LC_MESSAGES/R-data.table.mo |binary inst/po/zh_CN/LC_MESSAGES/data.table.mo |binary inst/tests/benchmark.Rraw.bz2 |binary inst/tests/froll.Rraw.bz2 |binary inst/tests/frollBatch.Rraw.bz2 |only inst/tests/mergelist.Rraw.bz2 |only inst/tests/nafill.Rraw.bz2 |binary inst/tests/other.Rraw.bz2 |binary inst/tests/programming.Rraw.bz2 |binary inst/tests/tests.Rraw.bz2 |binary man/IDateTime.Rd | 38 man/as.data.table.Rd | 2 man/as.matrix.Rd | 2 man/assign.Rd | 11 man/between.Rd | 5 man/cbindlist.Rd |only man/coalesce.Rd | 8 man/data.table-condition-classes.Rd |only man/data.table-options.Rd |only man/data.table.Rd | 14 man/datatable-optimize.Rd | 11 man/fctr.Rd |only man/fdroplevels.Rd | 3 man/foverlaps.Rd | 10 man/fread.Rd | 37 man/frev.Rd |only man/froll.Rd | 278 - man/frolladapt.Rd |only man/frollapply.Rd |only man/fwrite.Rd | 14 man/groupingsets.Rd | 40 man/last.Rd | 3 man/like.Rd | 2 man/measure.Rd | 2 man/melt.data.table.Rd | 11 man/mergelist.Rd |only man/nafill.Rd | 24 man/openmp-utils.Rd | 6 man/print.data.table.Rd | 4 man/rbindlist.Rd | 2 man/selfref.ok.Rd |only man/setDT.Rd | 11 man/setattr.Rd | 4 man/setkey.Rd | 8 man/setorder.Rd | 15 man/subset.data.table.Rd | 2 man/tables.Rd | 2 man/test.Rd | 2 man/test.data.table.Rd | 5 man/transform.data.table.Rd | 6 man/truelength.Rd | 21 src/assign.c | 277 - src/between.c | 17 src/bmerge.c | 70 src/chmatch.c | 102 src/cj.c | 3 src/coalesce.c | 60 src/data.table.h | 158 src/dogroups.c | 109 src/fastmean.c | 25 src/fifelse.c | 4 src/fmelt.c | 102 src/forder.c | 213 src/frank.c | 26 src/fread.c | 2706 +++++----- src/fread.h | 15 src/freadR.c | 482 - src/freadR.h | 11 src/froll.c | 1869 +++++- src/frollR.c | 362 - src/frolladaptive.c | 984 +++ src/frollapply.c |only src/fsort.c | 41 src/fwrite.c | 343 - src/fwrite.h | 6 src/fwriteLookups.h | 3 src/fwriteR.c | 119 src/gsumm.c | 44 src/hash.c |only src/idatetime.c | 88 src/init.c | 463 - src/inrange.c | 17 src/mergelist.c |only src/myomp.h | 1 src/nafill.c | 27 src/negate.c | 10 src/nqrecreateindices.c | 32 src/openmp-utils.c | 93 src/programming.c | 11 src/quickselect.c | 66 src/rbindlist.c | 143 src/reorder.c | 55 src/shellsort.c |only src/shift.c | 8 src/snprintf.c | 2 src/subset.c | 26 src/transpose.c | 97 src/types.c | 38 src/types.h | 2 src/uniqlist.c | 17 src/utils.c | 296 - src/vecseq.c | 19 src/wrappers.c | 2 tests/autoprint.R | 13 tests/autoprint.Rout.save | 14 tests/froll.R | 2 tests/main.R | 1 tests/mergelist.R |only vignettes/_translation_links.R |only vignettes/datatable-benchmarking.Rmd | 6 vignettes/datatable-faq.Rmd | 13 vignettes/datatable-fread-and-fwrite.Rmd |only vignettes/datatable-importing.Rmd | 9 vignettes/datatable-intro.Rmd | 14 vignettes/datatable-joins.Rmd | 210 vignettes/datatable-keys-fast-subset.Rmd | 10 vignettes/datatable-programming.Rmd | 70 vignettes/datatable-reference-semantics.Rmd | 32 vignettes/datatable-reshape.Rmd | 41 vignettes/datatable-sd-usage.Rmd | 6 vignettes/datatable-secondary-indices-and-auto-indexing.Rmd | 40 vignettes/fr/datatable-benchmarking.Rmd | 4 vignettes/fr/datatable-faq.Rmd | 18 vignettes/fr/datatable-fread-and-fwrite.Rmd |only vignettes/fr/datatable-importing.Rmd | 6 vignettes/fr/datatable-intro.Rmd | 37 vignettes/fr/datatable-joins.Rmd |only vignettes/fr/datatable-keys-fast-subset.Rmd | 27 vignettes/fr/datatable-programming.Rmd | 40 vignettes/fr/datatable-reference-semantics.Rmd | 18 vignettes/fr/datatable-reshape.Rmd | 39 vignettes/fr/datatable-sd-usage.Rmd | 15 vignettes/fr/datatable-secondary-indices-and-auto-indexing.Rmd | 48 vignettes/ru/datatable-importing.Rmd | 6 vignettes/ru/datatable-intro.Rmd | 11 vignettes/ru/datatable-reshape.Rmd | 45 218 files changed, 9818 insertions(+), 5200 deletions(-)
Title: Automatic Knowledge Classification
Description: A tidy framework for automatic knowledge classification and visualization. Currently, the core functionality of the framework is mainly supported by modularity-based clustering (community detection) in keyword co-occurrence network, and focuses on co-word analysis of bibliometric research. However, the designed functions in 'akc' are general, and could be extended to solve other tasks in text mining as well.
Author: Tian-Yuan Huang [aut, cre]
Maintainer: Tian-Yuan Huang <huang.tian-yuan@qq.com>
Diff between akc versions 0.9.9.2 dated 2025-12-16 and 0.9.9.3 dated 2025-12-24
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- R/keyword_merge.R | 2 +- inst/doc/akc_vignette.html | 2 +- inst/doc/tutorial_raw_text.html | 8 ++++---- 5 files changed, 13 insertions(+), 13 deletions(-)
Title: Low-Rank Methods for MVN and MVT Probabilities
Description: Implementation of the classic Genz algorithm and a novel tile-low-rank algorithm for computing relatively high-dimensional multivariate normal (MVN) and Student-t (MVT) probabilities.
References used for this package:
Foley, James, Andries van Dam, Steven Feiner, and John Hughes.
"Computer Graphics: Principle and Practice". Addison-Wesley
Publishing Company. Reading, Massachusetts (1987, ISBN:0-201-84840-6 1);
Genz, A., "Numerical computation of multivariate
normal probabilities," Journal of Computational and
Graphical Statistics, 1, 141-149 (1992) <doi:10.1080/10618600.1992.10477010>;
Cao, J., Genton, M. G., Keyes, D. E., & Turkiyyah, G. M. "Exploiting Low
Rank Covariance Structures for Computing High-Dimensional Normal and Student-
t Probabilities," Statistics and Computing, 31.1, 1-16 (2021)
<doi:10.1007/s11222-020-09978-y>;
Cao, J., Genton, M. G., Keyes, D. E., & Turkiyyah, G. M. "tlrmvnmvt:
Computing High-Dimensional Multivariate Normal and Student-t Probabilit [...truncated...]
Author: Marc Genton [aut],
David Keyes [aut],
George Turkiyyah [aut],
Jian Cao [aut, cre]
Maintainer: Jian Cao <jian.cao@kaust.edu.sa>
Diff between tlrmvnmvt versions 1.1.2 dated 2022-06-09 and 1.1.2.1 dated 2025-12-24
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ build/partial.rdb |binary configure | 4 ++-- configure.ac | 4 ++-- src/Makevars.in | 1 - src/Makevars.win | 1 - 7 files changed, 13 insertions(+), 15 deletions(-)
Title: Connect to ODBC Compatible Databases (using the DBI Interface)
Description: A DBI-compatible interface to ODBC databases.
Author: Jim Hester [aut],
Hadley Wickham [aut, cre],
Oliver Gjoneski [aut],
Simon Couch [aut],
lexicalunit [cph] ,
Google Inc. [cph] ,
Posit Software, PBC [cph, fnd]
Maintainer: Hadley Wickham <hadley@posit.co>
Diff between odbc versions 1.6.4 dated 2025-12-06 and 1.6.4.1 dated 2025-12-24
DESCRIPTION | 6 +++--- MD5 | 4 ++-- configure | 17 +++++++++++------ 3 files changed, 16 insertions(+), 11 deletions(-)
Title: Multi-Format Archive and Compression Support
Description: Bindings to 'libarchive' <http://www.libarchive.org> the
Multi-format archive and compression library. Offers R connections and
direct extraction for many archive formats including 'tar', 'ZIP',
'7-zip', 'RAR', 'CAB' and compression formats including 'gzip',
'bzip2', 'compress', 'lzma' and 'xz'.
Author: Jim Hester [aut] ,
Gabor Csardi [aut, cre],
Ondrej Holy [cph] ,
RStudio [cph, fnd]
Maintainer: Gabor Csardi <csardi.gabor@gmail.com>
Diff between archive versions 1.1.12 dated 2025-03-20 and 1.1.12.1 dated 2025-12-24
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- configure | 8 ++++---- 3 files changed, 10 insertions(+), 10 deletions(-)
Title: Spatial Phylogenetic Analysis
Description: Analyze spatial phylogenetic diversity patterns.
Use your data on an evolutionary tree and geographic distributions of the
terminal taxa to compute diversity and endemism metrics, test significance
with null model randomization, analyze community turnover and biotic
regionalization, and perform spatial conservation prioritizations. All
functions support quantitative community data in addition to binary data.
Author: Matthew Kling [aut, cre, cph]
Maintainer: Matthew Kling <mattkling@berkeley.edu>
Diff between phylospatial versions 1.2.0 dated 2025-12-20 and 1.2.1 dated 2025-12-23
DESCRIPTION | 6 - MD5 | 41 ++++++----- NAMESPACE | 1 NEWS.md | 6 + R/phylospatial-methods.R | 4 - R/phylospatial-package.R | 1 R/ps_canape.R | 6 + R/ps_dissim.R | 21 +++++- R/ps_diversity.R | 112 ++++++++++++++++++-------------- R/ps_ordinate.R | 47 ++++++++----- R/ps_prioritize.R | 93 +++++++++++++++++++------- R/ps_rand.R | 135 ++++++++++++++++++++++----------------- R/ps_regions.R | 28 ++++++-- R/utils.R | 96 +++++++++++++++++++++++++++ README.md | 37 ++++++---- inst/doc/beta-diversity.html | 2 man/build_tree_ranges_fast.Rd |only man/figures/README-example-1.png |only man/plot.phylospatial.Rd | 2 man/precompute_descendants.Rd |only man/ps_ordinate.Rd | 11 +-- man/ps_rgb.Rd | 2 tests/testthat/Rplots.pdf |binary 23 files changed, 449 insertions(+), 202 deletions(-)
Title: Fast Algorithms for Fitting Topic Models and Non-Negative Matrix
Factorizations to Count Data
Description: Implements fast, scalable optimization algorithms for
fitting topic models ("grade of membership" models) and
non-negative matrix factorizations to count data. The methods
exploit the special relationship between the multinomial topic
model (also, "probabilistic latent semantic indexing") and Poisson
non-negative matrix factorization. The package provides tools to
compare, annotate and visualize model fits, including functions to
efficiently create "structure plots" and identify key features in
topics. The 'fastTopics' package is a successor to the
'CountClust' package. For more information, see
<doi:10.48550/arXiv.2105.13440> and
<doi:10.1186/s13059-023-03067-9>. Please also see the GitHub
repository for additional vignettes not included in the package on
CRAN.
Author: Peter Carbonetto [aut, cre],
Kevin Luo [aut],
Kushal Dey [aut],
Joyce Hsiao [ctb],
Abhishek Sarkar [ctb],
Anthony Hung [ctb],
Xihui Lin [ctb],
Paul C. Boutros [ctb],
Minzhe Wang [ctb],
Tracy Ke [ctb],
Eric Weine [ctb],
Matthew Stephens [aut]
Maintainer: Peter Carbonetto <peter.carbonetto@gmail.com>
This is a re-admission after prior archival of version 0.7-30 dated 2025-10-20
Diff between fastTopics versions 0.7-30 dated 2025-10-20 and 0.7-37 dated 2025-12-23
DESCRIPTION | 14 ++++++------ MD5 | 36 +++++++++++++++---------------- NAMESPACE | 2 - R/annotation_heatmap.R | 11 +++++---- R/embedding_plots.R | 18 ++++++++++----- R/fit_poisson_nmf.R | 2 - R/other_plots.R | 35 +++++++++++++++++++----------- R/structure_plot.R | 7 +++--- R/volcano_plots.R | 9 +++++-- README.md | 2 - inst/doc/relationship.html | 4 +-- inst/doc/single_cell_rnaseq_basic.html | 14 ++++++------ inst/doc/topics_vs_clusters.html | 4 +-- src/RcppExports.cpp | 38 ++++++++++++++++----------------- src/ccd.cpp | 4 ++- src/misc.cpp | 27 ++++++++++++++++++----- src/pnmfem.cpp | 26 ++++++++++++---------- src/scd.cpp | 29 +++++++++++++------------ tests/testthat/test_fit_poisson_nmf.R | 4 +-- 19 files changed, 165 insertions(+), 121 deletions(-)
Title: Electric Vehicle Charging Sessions Profiling and Modelling
Description: Tools for modelling electric vehicle charging sessions into
generic groups with similar connection patterns called "user profiles",
using Gaussian Mixture Models clustering. The clustering and profiling
methodology is described in Cañigueral and Meléndez (2021, ISBN:0142-0615)
<doi:10.1016/j.ijepes.2021.107195>.
Author: Marc Canigueral [aut, cre, cph]
Maintainer: Marc Canigueral <marccanyigueral@gmail.com>
Diff between evprof versions 1.1.2 dated 2024-03-14 and 1.2.0 dated 2025-12-23
evprof-1.1.2/evprof/man/plot_model_clusters.Rd |only evprof-1.2.0/evprof/DESCRIPTION | 23 evprof-1.2.0/evprof/MD5 | 108 +-- evprof-1.2.0/evprof/NAMESPACE | 5 evprof-1.2.0/evprof/NEWS.md | 10 evprof-1.2.0/evprof/R/clustering.R | 31 - evprof-1.2.0/evprof/R/data.R | 16 evprof-1.2.0/evprof/R/exploration.R | 73 +- evprof-1.2.0/evprof/R/modelling.R | 271 +++++++--- evprof-1.2.0/evprof/R/preprocessing.R | 48 - evprof-1.2.0/evprof/R/profiling.R | 6 evprof-1.2.0/evprof/README.md | 69 +- evprof-1.2.0/evprof/build/vignette.rds |binary evprof-1.2.0/evprof/data/sessions_feature_names.rda |binary evprof-1.2.0/evprof/data/sessions_summary_feature_names.rda |binary evprof-1.2.0/evprof/inst/doc/evmodel.Rmd | 2 evprof-1.2.0/evprof/inst/doc/evmodel.html | 4 evprof-1.2.0/evprof/inst/doc/sessions-format.html | 4 evprof-1.2.0/evprof/man/california_GMM.Rd | 4 evprof-1.2.0/evprof/man/california_ev_model.Rd | 4 evprof-1.2.0/evprof/man/california_ev_sessions.Rd | 4 evprof-1.2.0/evprof/man/california_ev_sessions_profiles.Rd | 2 evprof-1.2.0/evprof/man/choose_k_GMM.Rd | 5 evprof-1.2.0/evprof/man/cluster_sessions.Rd | 5 evprof-1.2.0/evprof/man/cut_sessions.Rd | 5 evprof-1.2.0/evprof/man/define_clusters.Rd | 2 evprof-1.2.0/evprof/man/detect_outliers.Rd | 5 evprof-1.2.0/evprof/man/divide_by_disconnection.Rd | 3 evprof-1.2.0/evprof/man/divide_by_timecycle.Rd | 3 evprof-1.2.0/evprof/man/drop_outliers.Rd | 3 evprof-1.2.0/evprof/man/get_charging_rates_distribution.Rd | 3 evprof-1.2.0/evprof/man/get_connection_model_mclust_object.Rd | 5 evprof-1.2.0/evprof/man/get_daily_avg_n_sessions.Rd | 3 evprof-1.2.0/evprof/man/get_daily_n_sessions.Rd | 3 evprof-1.2.0/evprof/man/get_dbscan_params.Rd | 5 evprof-1.2.0/evprof/man/get_energy_model_mclust_object.Rd | 2 evprof-1.2.0/evprof/man/get_energy_models.Rd | 8 evprof-1.2.0/evprof/man/mutate_to_log.Rd | 2 evprof-1.2.0/evprof/man/plot_bivarGMM.Rd | 5 evprof-1.2.0/evprof/man/plot_connection_models.Rd |only evprof-1.2.0/evprof/man/plot_density_2D.Rd | 5 evprof-1.2.0/evprof/man/plot_density_3D.Rd | 5 evprof-1.2.0/evprof/man/plot_histogram.Rd | 3 evprof-1.2.0/evprof/man/plot_histogram_grid.Rd | 3 evprof-1.2.0/evprof/man/plot_kNNdist.Rd | 5 evprof-1.2.0/evprof/man/plot_outliers.Rd | 5 evprof-1.2.0/evprof/man/plot_points.Rd | 10 evprof-1.2.0/evprof/man/print.evmodel.Rd | 2 evprof-1.2.0/evprof/man/save_clustering_iterations.Rd | 7 evprof-1.2.0/evprof/man/save_ev_model.Rd | 2 evprof-1.2.0/evprof/man/summarise_sessions.Rd | 4 evprof-1.2.0/evprof/tests/testthat/test-clustering.R | 4 evprof-1.2.0/evprof/tests/testthat/test-exploration.R | 18 evprof-1.2.0/evprof/tests/testthat/test-modelling.R | 8 evprof-1.2.0/evprof/tests/testthat/test-preprocessing.R | 10 evprof-1.2.0/evprof/vignettes/evmodel.Rmd | 2 56 files changed, 499 insertions(+), 345 deletions(-)
Title: Image Processing Library Based on 'CImg'
Description: Fast image processing for images in up to 4 dimensions (two spatial
dimensions, one time/depth dimension, one colour dimension). Provides most
traditional image processing tools (filtering, morphology, transformations,
etc.) as well as various functions for easily analysing image data using R. The
package wraps 'CImg', <https://cimg.eu>, a simple, modern C++ library for image
processing.
Author: Simon Barthelme [aut],
David Tschumperle [ctb],
Jan Wijffels [ctb],
Haz Edine Assemlal [ctb],
Shota Ochi [ctb],
Aaron Robotham [cre],
Rodrigo Tobar [ctb]
Maintainer: Aaron Robotham <aaron.robotham@uwa.edu.au>
Diff between imager versions 1.0.5 dated 2025-08-03 and 1.0.8 dated 2025-12-23
DESCRIPTION | 8 +- MD5 | 18 +++--- NEWS.md | 2 build/vignette.rds |binary data/boats.rda |binary inst/doc/gettingstarted.Rmd | 4 - inst/doc/gettingstarted.html | 94 ++++++++++++++++----------------- inst/doc/pixsets.html | 58 ++++++++++---------- tests/testthat/test_load_save_videos.R | 2 vignettes/gettingstarted.Rmd | 4 - 10 files changed, 96 insertions(+), 94 deletions(-)
Title: Automatic Generation of Exams in R
Description: Automatic generation of exams based on exercises in Markdown or LaTeX format,
possibly including R code for dynamic generation of exercise elements.
Exercise types include single-choice and multiple-choice questions, arithmetic problems,
string questions, and combinations thereof (cloze). Output formats include standalone
files (PDF, HTML, Docx, ODT, ...), Moodle XML, QTI 1.2, QTI 2.1, Blackboard, Canvas, OpenOlat, ILIAS, TestVision,
Particify, ARSnova, Kahoot!, Grasple, and TCExam. In addition to fully customizable PDF exams, a standardized PDF format
(NOPS) is provided that can be printed, scanned, and automatically evaluated.
Author: Achim Zeileis [aut, cre] ,
Bettina Gruen [aut] ,
Friedrich Leisch [aut] ,
Nikolaus Umlauf [aut] ,
Niels Smits [aut] ,
Mirko Birbaumer [ctb],
Dominik Ernst [ctb] ,
Patrik Keller [ctb],
Reto Stauffer [ctb] ,
Kenji Sato [ctb] ,
Florian Wickelmaier [ctb] [...truncated...]
Maintainer: Achim Zeileis <Achim.Zeileis@R-project.org>
Diff between exams versions 2.4-2 dated 2025-04-29 and 2.4-3 dated 2025-12-23
exams-2.4-2/exams/inst/xml/nops_fix.html |only exams-2.4-3/exams/DESCRIPTION | 29 exams-2.4-3/exams/MD5 | 93 exams-2.4-3/exams/NAMESPACE | 10 exams-2.4-3/exams/NEWS.md | 3134 +++++++++++++------------- exams-2.4-3/exams/R/add_cloze.R |only exams-2.4-3/exams/R/exams2ans.R | 3 exams-2.4-3/exams/R/exams2blackboard.R | 19 exams-2.4-3/exams/R/exams2moodle.R | 28 exams-2.4-3/exams/R/exams2nops.R | 86 exams-2.4-3/exams/R/exams2pdf.R | 11 exams-2.4-3/exams/R/exams2qti12.R | 4 exams-2.4-3/exams/R/exams2qti21.R | 97 exams-2.4-3/exams/R/exams2wooclap.R |only exams-2.4-3/exams/R/exams_eval.R | 9 exams-2.4-3/exams/R/fileURI.R | 46 exams-2.4-3/exams/R/formatters.R | 44 exams-2.4-3/exams/R/nops_eval.R | 12 exams-2.4-3/exams/R/nops_fix.R | 6 exams-2.4-3/exams/R/nops_scan.R | 7 exams-2.4-3/exams/R/pandoc.R | 26 exams-2.4-3/exams/R/read_metainfo.R | 24 exams-2.4-3/exams/R/search_files.R | 2 exams-2.4-3/exams/R/transformers.R | 16 exams-2.4-3/exams/R/xexams.R | 25 exams-2.4-3/exams/inst/doc/exams.pdf |binary exams-2.4-3/exams/inst/doc/exams2.R | 8 exams-2.4-3/exams/inst/doc/exams2.Rnw | 8 exams-2.4-3/exams/inst/doc/exams2.pdf |binary exams-2.4-3/exams/inst/exercises/penguins.Rmd |only exams-2.4-3/exams/inst/exercises/penguins.Rnw |only exams-2.4-3/exams/inst/nops/de.dcf | 1 exams-2.4-3/exams/inst/nops/eu.dcf |only exams-2.4-3/exams/inst/nops/nops_fix.html |only exams-2.4-3/exams/inst/pandoc/plain.tex | 12 exams-2.4-3/exams/inst/xml/ilias.xml | 15 exams-2.4-3/exams/man/add_cloze.Rd |only exams-2.4-3/exams/man/exams2ans.Rd |only exams-2.4-3/exams/man/exams2blackboard.Rd | 2 exams-2.4-3/exams/man/exams2html.Rd | 2 exams-2.4-3/exams/man/exams2ilias.Rd | 18 exams-2.4-3/exams/man/exams2moodle.Rd | 17 exams-2.4-3/exams/man/exams2nops.Rd | 51 exams-2.4-3/exams/man/exams2pdf.Rd | 2 exams-2.4-3/exams/man/exams2qti12.Rd | 8 exams-2.4-3/exams/man/exams2qti21.Rd | 8 exams-2.4-3/exams/man/exams2wooclap.Rd |only exams-2.4-3/exams/man/match_exams_call.Rd | 13 exams-2.4-3/exams/man/mchoice2string.Rd | 13 exams-2.4-3/exams/man/xexams.Rd | 2 exams-2.4-3/exams/tests/exams2nops.R |only exams-2.4-3/exams/vignettes/exams.bib | 59 exams-2.4-3/exams/vignettes/exams2.Rnw | 8 53 files changed, 2156 insertions(+), 1822 deletions(-)
Title: Integration to 'Apache' 'Arrow'
Description: 'Apache' 'Arrow' <https://arrow.apache.org/> is a cross-language
development platform for in-memory data. It specifies a standardized
language-independent columnar memory format for flat and hierarchical data,
organized for efficient analytic operations on modern hardware. This
package provides an interface to the 'Arrow C++' library.
Author: Neal Richardson [aut],
Ian Cook [aut],
Nic Crane [aut],
Dewey Dunnington [aut] ,
Romain Francois [aut] ,
Jonathan Keane [aut, cre],
Bryce Mecum [aut],
Dragoș Moldovan-Gruenfeld [aut],
Jeroen Ooms [aut],
Jacob Wujciak-Jens [aut],
Javier Luraschi [ctb], [...truncated...]
Maintainer: Jonathan Keane <jkeane@gmail.com>
Diff between arrow versions 22.0.0 dated 2025-10-29 and 22.0.0.1 dated 2025-12-23
DESCRIPTION | 6 +++--- MD5 | 12 ++++++------ NEWS.md | 8 ++++++++ inst/build_arrow_static.sh | 3 ++- src/Makevars.in | 2 +- tools/cpp/thirdparty/versions.txt | 7 +++++-- tools/nixlibs.R | 6 ++++++ 7 files changed, 31 insertions(+), 13 deletions(-)
Title: Deep Neural Networks for Survival Analysis using 'torch'
Description: Provides deep learning models for right-censored survival data using the 'torch' backend.
Supports multiple loss functions, including Cox partial likelihood, L2-penalized Cox, time-dependent Cox,
and accelerated failure time (AFT) loss. Offers a formula-based interface, built-in support for cross-validation,
hyperparameter tuning, survival curve plotting, and evaluation metrics such as the C-index, Brier score,
and integrated Brier score. For methodological details, see Kvamme et al. (2019) <https://www.jmlr.org/papers/v20/18-424.html>.
Author: Imad EL BADISY [aut, cre]
Maintainer: Imad EL BADISY <elbadisyimad@gmail.com>
Diff between survdnn versions 0.6.3 dated 2025-10-30 and 0.7.0 dated 2025-12-23
DESCRIPTION | 8 MD5 | 53 +++--- NAMESPACE | 2 NEWS.md | 69 +++++--- R/callbacks.R |only R/evaluation.R | 106 +++++++++--- R/gridsearch_survdnn.R | 77 +++++---- R/losses.R | 2 R/plot_loss.R |only R/predict.survdnn.R | 291 ++++++++++++++++++++++++++++------ R/print.survdnn.R | 7 R/summary.survdnn.R | 17 +- R/survdnn.R | 308 ++++++++++++++++++++++++++----------- R/tune_survdnn.R | 121 +++++++++----- R/zzz.R | 60 +++++++ README.md | 267 +++++++++++++++++++++++--------- man/build_dnn.Rd | 25 +-- man/callback_early_stopping.Rd |only man/cv_survdnn.Rd | 9 + man/evaluate_survdnn.Rd | 21 -- man/gridsearch_survdnn.Rd | 5 man/plot_loss.Rd |only man/predict.survdnn.Rd | 19 +- man/survdnn.Rd | 57 ++++-- man/tune_survdnn.Rd | 11 + tests/testthat/test-callbacks.R |only tests/testthat/test-device.R |only tests/testthat/test-losses.R | 37 +++- tests/testthat/test-missing-data.R |only tests/testthat/test-optimizers.R |only tests/testthat/test-plot-loss.R |only tests/testthat/test-survdnn.R | 68 +++++++- 32 files changed, 1207 insertions(+), 433 deletions(-)
Title: Generate Optimal Designs of Accelerated Life Test using
PSO-Based Algorithm
Description: A computationally efficient solution for generating optimal experimental designs in Accelerated Life Testing (ALT). Leveraging a Particle Swarm Optimization (PSO)-based hybrid algorithm, the package identifies optimal test plans that minimize estimation variance under specified failure models and stress profiles. For more detailed, see Lee et al. (2025), Optimal Robust Strategies for Accelerated Life Tests and Fatigue Testing of Polymer Composite Materials <doi:10.1214/25-AOAS2075>, and Hoang (2025), Model-Robust Minimax Design of Accelerated Life Tests via PSO-based Hybrid Algorithm, Master' Thesis, Unpublished.
Author: Hoai-Linh Hoang [aut, cre],
I-Chen Lee [aut],
Ping-Yang Chen [aut],
Ray-Bing Chen [aut],
Weng Kee Wong [aut]
Maintainer: Hoai-Linh Hoang <hoailinh.hoang17@gmail.com>
Diff between minimaxALT versions 1.0.2 dated 2025-10-10 and 1.0.3 dated 2025-12-23
DESCRIPTION | 8 ++++---- MD5 | 4 ++-- NEWS.md | 4 ++++ 3 files changed, 10 insertions(+), 6 deletions(-)
Title: Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian
Models
Description: Efficient approximate leave-one-out cross-validation (LOO)
for Bayesian models fit using Markov chain Monte Carlo, as described
in Vehtari, Gelman, and Gabry (2017) <doi:10.1007/s11222-016-9696-4>.
The approximation uses Pareto smoothed importance sampling (PSIS), a
new procedure for regularizing importance weights. As a byproduct of
the calculations, we also obtain approximate standard errors for
estimated predictive errors and for the comparison of predictive
errors between models. The package also provides methods for using
stacking and other model weighting techniques to average Bayesian
predictive distributions.
Author: Aki Vehtari [aut],
Jonah Gabry [cre, aut],
Mans Magnusson [aut],
Yuling Yao [aut],
Paul-Christian Buerkner [aut],
Topi Paananen [aut],
Andrew Gelman [aut],
Ben Goodrich [ctb],
Juho Piironen [ctb],
Bruno Nicenboim [ctb],
Leevi Lindgren [ctb],
Visruth S [...truncated...]
Maintainer: Jonah Gabry <jgabry@gmail.com>
Diff between loo versions 2.8.0 dated 2024-07-03 and 2.9.0 dated 2025-12-23
loo-2.8.0/loo/man/figures/stanlogo.png |only loo-2.8.0/loo/tests/testthat/reference-results |only loo-2.9.0/loo/DESCRIPTION | 72 loo-2.9.0/loo/MD5 | 194 loo-2.9.0/loo/NEWS.md | 19 loo-2.9.0/loo/R/E_loo.R | 13 loo-2.9.0/loo/R/crps.R | 12 loo-2.9.0/loo/R/diagnostics.R | 3 loo-2.9.0/loo/R/effective_sample_sizes.R | 85 loo-2.9.0/loo/R/kfold-helpers.R | 7 loo-2.9.0/loo/R/loo.R | 2 loo-2.9.0/loo/R/loo_compare.R | 12 loo-2.9.0/loo/R/loo_model_weights.R | 18 loo-2.9.0/loo/R/loo_moment_matching.R | 2 loo-2.9.0/loo/R/loo_subsample.R | 4 loo-2.9.0/loo/R/psis.R | 104 loo-2.9.0/loo/build/partial.rdb |binary loo-2.9.0/loo/build/vignette.rds |binary loo-2.9.0/loo/inst/CITATION | 85 loo-2.9.0/loo/inst/doc/loo2-elpd.R | 14 loo-2.9.0/loo/inst/doc/loo2-elpd.Rmd | 14 loo-2.9.0/loo/inst/doc/loo2-elpd.html | 432 -- loo-2.9.0/loo/inst/doc/loo2-example.Rmd | 9 loo-2.9.0/loo/inst/doc/loo2-example.html | 463 -- loo-2.9.0/loo/inst/doc/loo2-large-data.R | 398 +- loo-2.9.0/loo/inst/doc/loo2-large-data.html | 741 +-- loo-2.9.0/loo/inst/doc/loo2-lfo.html | 1075 ++--- loo-2.9.0/loo/inst/doc/loo2-mixis.html | 447 -- loo-2.9.0/loo/inst/doc/loo2-moment-matching.R | 48 loo-2.9.0/loo/inst/doc/loo2-moment-matching.Rmd | 48 loo-2.9.0/loo/inst/doc/loo2-moment-matching.html | 630 +-- loo-2.9.0/loo/inst/doc/loo2-non-factorized.R | 190 loo-2.9.0/loo/inst/doc/loo2-non-factorized.html | 990 +--- loo-2.9.0/loo/inst/doc/loo2-weights.html | 570 +- loo-2.9.0/loo/inst/doc/loo2-with-rstan.R | 76 loo-2.9.0/loo/inst/doc/loo2-with-rstan.html | 324 - loo-2.9.0/loo/man/E_loo.Rd | 13 loo-2.9.0/loo/man/crps.Rd | 12 loo-2.9.0/loo/man/figures/logo.svg | 97 loo-2.9.0/loo/man/loo-glossary.Rd | 6 loo-2.9.0/loo/man/loo-package.Rd | 3 loo-2.9.0/loo/man/loo_compare.Rd | 8 loo-2.9.0/loo/man/loo_model_weights.Rd | 3 loo-2.9.0/loo/man/loo_moment_match.Rd | 2 loo-2.9.0/loo/tests/testthat/_snaps |only loo-2.9.0/loo/tests/testthat/test_0_helpers.R | 47 loo-2.9.0/loo/tests/testthat/test_E_loo.R | 92 loo-2.9.0/loo/tests/testthat/test_compare.R | 170 loo-2.9.0/loo/tests/testthat/test_crps.R | 10 loo-2.9.0/loo/tests/testthat/test_deprecated_extractors.R | 121 loo-2.9.0/loo/tests/testthat/test_extract_log_lik.R | 3 loo-2.9.0/loo/tests/testthat/test_gpdfit.R | 18 loo-2.9.0/loo/tests/testthat/test_kfold_helpers.R | 106 loo-2.9.0/loo/tests/testthat/test_loo_and_waic.R | 94 loo-2.9.0/loo/tests/testthat/test_loo_approximate_posterior.R | 153 loo-2.9.0/loo/tests/testthat/test_loo_moment_matching.R | 584 ++ loo-2.9.0/loo/tests/testthat/test_loo_predictive_metric.R | 22 loo-2.9.0/loo/tests/testthat/test_loo_subsampling.R | 1982 +++++----- loo-2.9.0/loo/tests/testthat/test_loo_subsampling_approximations.R |only loo-2.9.0/loo/tests/testthat/test_loo_subsampling_cases.R |only loo-2.9.0/loo/tests/testthat/test_model_weighting.R | 104 loo-2.9.0/loo/tests/testthat/test_pointwise.R | 14 loo-2.9.0/loo/tests/testthat/test_print_plot.R | 75 loo-2.9.0/loo/tests/testthat/test_psis.R | 52 loo-2.9.0/loo/tests/testthat/test_psis_approximate_posterior.R | 166 loo-2.9.0/loo/tests/testthat/test_psislw.R | 39 loo-2.9.0/loo/tests/testthat/test_relative_eff.R | 17 loo-2.9.0/loo/tests/testthat/test_tisis.R | 102 loo-2.9.0/loo/vignettes/logo.svg |only loo-2.9.0/loo/vignettes/loo2-elpd.Rmd | 14 loo-2.9.0/loo/vignettes/loo2-example.Rmd | 9 loo-2.9.0/loo/vignettes/loo2-moment-matching.Rmd | 48 72 files changed, 5454 insertions(+), 5833 deletions(-)
Title: Linking Geographic Information Systems, Remote Sensing and Other
Command Line Tools
Description: Functions and tools for using open GIS and remote sensing command-line interfaces in a reproducible environment.
Author: Chris Reudenbach [cre, aut],
Tim Appelhans [ctb]
Maintainer: Chris Reudenbach <reudenbach@uni-marburg.de>
Diff between link2GI versions 0.6-2 dated 2024-10-28 and 0.7-2 dated 2025-12-23
link2GI-0.6-2/link2GI/R/linkOTB.R |only link2GI-0.6-2/link2GI/R/otbControls.R |only link2GI-0.6-2/link2GI/R/parseOTB.R |only link2GI-0.6-2/link2GI/man/setenvOTB.Rd |only link2GI-0.7-2/link2GI/DESCRIPTION | 18 link2GI-0.7-2/link2GI/MD5 | 133 - link2GI-0.7-2/link2GI/NAMESPACE | 12 link2GI-0.7-2/link2GI/NEWS | 39 link2GI-0.7-2/link2GI/NEWS.md | 41 link2GI-0.7-2/link2GI/R/gdalControls.R | 245 +- link2GI-0.7-2/link2GI/R/grassControl.R | 1141 ++++++---- link2GI-0.7-2/link2GI/R/initProj.R | 33 link2GI-0.7-2/link2GI/R/link2giKarim.R | 9 link2GI-0.7-2/link2GI/R/linkGDAL.R | 4 link2GI-0.7-2/link2GI/R/linkGRASS.R | 523 ++-- link2GI-0.7-2/link2GI/R/linkSAGA.R | 2 link2GI-0.7-2/link2GI/R/otb_api.R |only link2GI-0.7-2/link2GI/R/otb_link.R |only link2GI-0.7-2/link2GI/R/otb_link_dispatch.R |only link2GI-0.7-2/link2GI/R/otb_link_linux.R |only link2GI-0.7-2/link2GI/R/otb_link_windows.R |only link2GI-0.7-2/link2GI/R/otb_linux_link.R |only link2GI-0.7-2/link2GI/R/otb_linux_run.R |only link2GI-0.7-2/link2GI/R/otb_linux_search.R |only link2GI-0.7-2/link2GI/R/otb_parse.R |only link2GI-0.7-2/link2GI/R/otb_parse_legacy.R |only link2GI-0.7-2/link2GI/R/otb_run.R |only link2GI-0.7-2/link2GI/R/otb_version_select.R |only link2GI-0.7-2/link2GI/R/otb_windows_search.R |only link2GI-0.7-2/link2GI/R/sagaControl.R | 8 link2GI-0.7-2/link2GI/README.md | 90 link2GI-0.7-2/link2GI/build/vignette.rds |binary link2GI-0.7-2/link2GI/inst/doc/link2GI1.Rmd | 62 link2GI-0.7-2/link2GI/inst/doc/link2GI1.html | 183 + link2GI-0.7-2/link2GI/inst/doc/link2GI2.R | 423 ++- link2GI-0.7-2/link2GI/inst/doc/link2GI2.Rmd | 283 +- link2GI-0.7-2/link2GI/inst/doc/link2GI2.html | 474 ++-- link2GI-0.7-2/link2GI/inst/doc/link2GI3.R | 131 - link2GI-0.7-2/link2GI/inst/doc/link2GI3.Rmd | 280 +- link2GI-0.7-2/link2GI/inst/doc/link2GI3.html | 449 ++- link2GI-0.7-2/link2GI/inst/doc/link2GI4.R | 153 - link2GI-0.7-2/link2GI/inst/doc/link2GI4.Rmd | 255 +- link2GI-0.7-2/link2GI/inst/doc/link2GI4.html | 772 +++++- link2GI-0.7-2/link2GI/inst/doc/link2GI5.R |only link2GI-0.7-2/link2GI/inst/doc/link2GI5.Rmd | 331 ++ link2GI-0.7-2/link2GI/inst/doc/link2GI5.html | 445 ++- link2GI-0.7-2/link2GI/inst/doc/link2GI6.R | 1 link2GI-0.7-2/link2GI/inst/doc/link2GI6.Rmd | 211 - link2GI-0.7-2/link2GI/inst/doc/link2GI6.html | 448 +-- link2GI-0.7-2/link2GI/inst/templates/config-default-projects.yml | 126 - link2GI-0.7-2/link2GI/inst/templates/script_setup.brew | 58 link2GI-0.7-2/link2GI/man/findGRASS.Rd | 26 link2GI-0.7-2/link2GI/man/findOTB.Rd | 29 link2GI-0.7-2/link2GI/man/getrowotbVer.Rd |only link2GI-0.7-2/link2GI/man/linkGRASS.Rd | 153 - link2GI-0.7-2/link2GI/man/linkOTB.Rd | 56 link2GI-0.7-2/link2GI/man/linkOTB_linux.Rd |only link2GI-0.7-2/link2GI/man/otb_api.Rd |only link2GI-0.7-2/link2GI/man/parseOTBAlgorithms.Rd | 34 link2GI-0.7-2/link2GI/man/parseOTBFunction.Rd | 38 link2GI-0.7-2/link2GI/man/runOTB.Rd | 103 link2GI-0.7-2/link2GI/man/runOTB_isolated.Rd |only link2GI-0.7-2/link2GI/man/searchGDALX.Rd | 36 link2GI-0.7-2/link2GI/man/searchGRASSW.Rd | 56 link2GI-0.7-2/link2GI/man/searchGRASSX.Rd | 28 link2GI-0.7-2/link2GI/man/searchOTBW.Rd | 53 link2GI-0.7-2/link2GI/man/searchOTBX.Rd | 23 link2GI-0.7-2/link2GI/man/setenvGRASSw.Rd | 5 link2GI-0.7-2/link2GI/tests |only link2GI-0.7-2/link2GI/vignettes/link2GI1.Rmd | 62 link2GI-0.7-2/link2GI/vignettes/link2GI2.Rmd | 283 +- link2GI-0.7-2/link2GI/vignettes/link2GI3.Rmd | 280 +- link2GI-0.7-2/link2GI/vignettes/link2GI4.Rmd | 255 +- link2GI-0.7-2/link2GI/vignettes/link2GI5.Rmd | 331 ++ link2GI-0.7-2/link2GI/vignettes/link2GI6.Rmd | 211 - 75 files changed, 6027 insertions(+), 3418 deletions(-)
Title: Toolkit for Weighting and Analysis of Nonequivalent Groups
Description: Provides functions for propensity score
estimating and weighting, nonresponse weighting, and diagnosis
of the weights.
Author: Matthew Cefalu [aut],
Greg Ridgeway [aut],
Dan McCaffrey [aut],
Andrew Morral [aut],
Beth Ann Griffin [aut],
Lane Burgette [aut, cre]
Maintainer: Lane Burgette <burgette@rand.org>
Diff between twang versions 2.6.1 dated 2024-07-22 and 2.6.2 dated 2025-12-23
DESCRIPTION | 34 ++ MD5 | 12 R/ps.fast.R | 710 ++++++++++++++++++++++++++--------------------------- build/vignette.rds |binary inst/doc/iptw.pdf |binary inst/doc/mnps.pdf |binary inst/doc/twang.pdf |binary 7 files changed, 390 insertions(+), 366 deletions(-)
Title: Helper Functions for Creating Tutorials
Description: Helper functions for creating, editing, and testing tutorials
created with the 'learnr' package. Provides a simple method for allowing
students to download their answers to tutorial questions. For examples
of its use, see the 'r4ds.tutorials' package.
Author: David Kane [aut, cre, cph]
Maintainer: David Kane <dave.kane@gmail.com>
Diff between tutorial.helpers versions 0.6.0 dated 2025-09-11 and 0.6.1 dated 2025-12-23
DESCRIPTION | 6 MD5 | 39 NEWS.md | 8 R/make_exercise.R | 80 - README.md | 77 - build/vignette.rds |binary inst/doc/ai.html | 537 ++++----- inst/doc/ai.qmd | 51 inst/doc/instructions.html | 4 inst/doc/instructions.qmd | 4 inst/rmarkdown/templates/tutorial_template/skeleton/skeleton.Rmd | 90 + inst/tutorials/getting-started/tutorial.html | 205 +-- inst/tutorials/introduction-to-python |only inst/tutorials/introduction-to-r/tutorial.Rmd | 159 ++ inst/tutorials/introduction-to-r/tutorial.html | 564 +++++++--- tests/testthat/test-make_exercise.R | 61 - tests/testthat/test-render.R | 3 vignettes/ai.qmd | 51 vignettes/instructions.qmd | 4 19 files changed, 1275 insertions(+), 668 deletions(-)
More information about tutorial.helpers at CRAN
Permanent link
Title: An API Generator for R
Description: Gives the ability to automatically generate and serve an HTTP
API from R functions using the annotations in the R documentation
around your functions.
Author: Barret Schloerke [cre, aut] ,
Jeff Allen [aut, ccp],
Bruno Tremblay [ctb],
Frans van Dunne [ctb],
Sebastiaan Vandewoude [ctb],
Posit Software, PBC [cph, fnd]
Maintainer: Barret Schloerke <barret@posit.co>
Diff between plumber versions 1.3.1 dated 2025-12-13 and 1.3.2 dated 2025-12-23
DESCRIPTION | 6 +++--- MD5 | 6 +++--- NEWS.md | 7 +++++++ tests/testthat/test-zzzz-include.R | 10 ++++++++-- 4 files changed, 21 insertions(+), 8 deletions(-)
Title: Tools for Various R Functions Helpers
Description: Contains miscellaneous functions useful for managing 'NetCDF' files (see <https://en.wikipedia.org/wiki/NetCDF>), get moon phase and time for sun rise and fall, tide level, analyse and reconstruct periodic time series of temperature with irregular sinusoidal pattern, show scales and wind rose in plot with change of color of text, Metropolis-Hastings algorithm for Bayesian MCMC analysis, plot graphs or boxplot with error bars, search files in disk by there names or their content, read the contents of all files from a folder at one time.
Author: Marc Girondot [aut, cre]
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between HelpersMG versions 6.6 dated 2025-06-16 and 2025.12.22 dated 2025-12-23
DESCRIPTION | 13 +- MD5 | 38 ++++---- NEWS | 7 + R/HelpersMG-package.R | 4 R/IC_clean_data.R | 17 ++- R/MHalgoGen.R | 2 R/MovingWindow.R | 4 R/RandomFromHessianOrMCMC.R | 53 +++++++++-- R/as.parameters.R | 17 ++- R/as.quantiles.R | 21 +++- R/from_min_max.R | 183 ++++++++++++++++++++++++++++++++--------- R/onAttach.R | 4 R/sysdata.rda |binary inst/shiny/cutter/ui.R | 2 man/HelpersMG-package.Rd | 4 man/MovingWindow.Rd | 4 man/RandomFromHessianOrMCMC.Rd | 19 +++- man/as.quantiles.Rd | 4 man/figures/TB.png |binary man/from_min_max.Rd | 6 + 20 files changed, 289 insertions(+), 113 deletions(-)
Title: Routines for Common fMRI Processing Tasks
Description: Supports fMRI (functional magnetic resonance imaging)
analysis tasks including reading in 'CIFTI', 'GIFTI' and
'NIFTI' data, temporal filtering, nuisance regression, and
aCompCor (anatomical Components Correction) (Muschelli et al.
(2014) <doi:10.1016/j.neuroimage.2014.03.028>).
Author: Amanda Mejia [aut, cre],
Damon Pham [aut] ,
Mark Fiecas [ctb]
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>
Diff between fMRItools versions 0.6.0 dated 2025-05-20 and 0.7.2 dated 2025-12-23
fMRItools-0.6.0/fMRItools/R/dim_reduce.R |only fMRItools-0.6.0/fMRItools/man/dim_reduce.Rd |only fMRItools-0.7.2/fMRItools/DESCRIPTION | 10 - fMRItools-0.7.2/fMRItools/MD5 | 22 +- fMRItools-0.7.2/fMRItools/NAMESPACE | 1 fMRItools-0.7.2/fMRItools/NEWS.md | 7 fMRItools-0.7.2/fMRItools/R/dice_overlap.R |only fMRItools-0.7.2/fMRItools/R/dual_reg_parc.R | 6 fMRItools-0.7.2/fMRItools/R/plot_FC.R | 4 fMRItools-0.7.2/fMRItools/R/plot_FC_gg.R | 143 ++++++++++++------- fMRItools-0.7.2/fMRItools/man/cor_mat.Rd | 4 fMRItools-0.7.2/fMRItools/man/dice_overlap.Rd |only fMRItools-0.7.2/fMRItools/man/plot_FC_gg.Rd | 32 ++-- fMRItools-0.7.2/fMRItools/tests/testthat/test-misc.R | 6 14 files changed, 151 insertions(+), 84 deletions(-)
Title: Build and Manipulate Study Cohorts Using a Common Data Model
Description: Create and manipulate study cohorts in data mapped to the
Observational Medical Outcomes Partnership Common Data Model.
Author: Edward Burn [aut, cre] ,
Marti Catala [aut] ,
Nuria Mercade-Besora [aut] ,
Marta Alcalde-Herraiz [aut] ,
Mike Du [aut] ,
Yuchen Guo [aut] ,
Xihang Chen [aut] ,
Kim Lopez-Guell [aut] ,
Elin Rowlands [aut]
Maintainer: Edward Burn <edward.burn@ndorms.ox.ac.uk>
Diff between CohortConstructor versions 0.6.0 dated 2025-10-31 and 0.6.1 dated 2025-12-23
DESCRIPTION | 20 MD5 | 197 +-- NAMESPACE | 1 R/addIndex.R | 6 R/collapseCohorts.R | 12 R/conceptCohort.R | 13 R/copyCohorts.R | 2 R/deathCohort.R | 5 R/demographicsCohort.R | 2 R/entryAtColumnDate.R | 4 R/exitAtColumnDate.R | 4 R/exitAtDate.R | 4 R/intersectCohorts.R | 2 R/matchCohorts.R | 2 R/measurementCohort.R | 2 R/mockCohortConstructor.R | 31 R/padCohortDate.R | 6 R/renameCohort.R | 2 R/requireCohortIntersect.R | 2 R/requireConceptIntersect.R | 4 R/requireDateRange.R | 38 R/requireDemographics.R | 10 R/requireDuration.R | 4 R/requireIsEntry.R | 6 R/requireMinCohortCount.R | 2 R/requireTableIntersect.R | 2 R/sampleCohorts.R | 2 R/stratifyCohorts.R | 2 R/subsetCohorts.R | 2 R/timeWindowCohorts.R |only R/trimDemographics.R | 2 R/unionCohorts.R | 8 R/yearCohorts.R | 2 README.md | 61 build/vignette.rds |binary inst/doc/a01_building_base_cohorts.html | 17 inst/doc/a02_cohort_table_requirements.R | 248 ++- inst/doc/a02_cohort_table_requirements.Rmd | 12 inst/doc/a02_cohort_table_requirements.html | 1744 ---------------------------- inst/doc/a03_require_demographics.R | 119 - inst/doc/a03_require_demographics.Rmd | 9 inst/doc/a03_require_demographics.html | 1298 -------------------- inst/doc/a04_require_intersections.html | 5 inst/doc/a05_update_cohort_start_end.R | 163 +- inst/doc/a05_update_cohort_start_end.Rmd | 11 inst/doc/a05_update_cohort_start_end.html | 130 -- inst/doc/a06_concatanate_cohorts.html | 5 inst/doc/a07_filter_cohorts.html | 5 inst/doc/a08_split_cohorts.html | 5 inst/doc/a09_combine_cohorts.html | 5 inst/doc/a10_match_cohorts.html | 5 inst/doc/a11_benchmark.html | 5 inst/doc/a12_behind_the_scenes.html | 5 man/addCohortTableIndex.Rd | 7 man/collapseCohorts.Rd | 13 man/conceptCohort.Rd | 2 man/copyCohorts.Rd | 2 man/deathCohort.Rd | 5 man/demographicsCohort.Rd | 2 man/entryAtFirstDate.Rd | 2 man/entryAtLastDate.Rd | 2 man/exitAtDeath.Rd | 2 man/exitAtFirstDate.Rd | 2 man/exitAtLastDate.Rd | 2 man/exitAtObservationEnd.Rd | 2 man/intersectCohorts.Rd | 2 man/matchCohorts.Rd | 2 man/mockCohortConstructor.Rd | 2 man/padCohortDate.Rd | 2 man/padCohortEnd.Rd | 2 man/padCohortStart.Rd | 2 man/renameCohort.Rd | 2 man/requireAge.Rd | 2 man/requireCohortIntersect.Rd | 2 man/requireConceptIntersect.Rd | 4 man/requireDemographics.Rd | 2 man/requireDuration.Rd | 2 man/requireFutureObservation.Rd | 2 man/requireInDateRange.Rd | 18 man/requireIsEntry.Rd | 2 man/requireIsFirstEntry.Rd | 2 man/requireIsLastEntry.Rd | 2 man/requireMinCohortCount.Rd | 2 man/requirePriorObservation.Rd | 2 man/requireSex.Rd | 2 man/requireTableIntersect.Rd | 2 man/sampleCohorts.Rd | 2 man/stratifyCohorts.Rd | 2 man/subsetCohorts.Rd | 2 man/timeWindowCohorts.Rd |only man/trimDemographics.Rd | 2 man/trimDuration.Rd | 2 man/trimToDateRange.Rd | 20 man/unionCohorts.Rd | 2 man/yearCohorts.Rd | 2 tests/testthat/test-conceptCohort.R | 33 tests/testthat/test-unionCohorts.R | 17 tests/testthat/timeWindowCohorts.R |only vignettes/a02_cohort_table_requirements.Rmd | 12 vignettes/a03_require_demographics.Rmd | 9 vignettes/a05_update_cohort_start_end.Rmd | 11 101 files changed, 685 insertions(+), 3787 deletions(-)
More information about CohortConstructor at CRAN
Permanent link
Title: Bayesian Variable Selection and Model Averaging using Bayesian
Adaptive Sampling
Description: Package for Bayesian Variable Selection and Model Averaging
in linear models and generalized linear models using stochastic or
deterministic sampling without replacement from posterior
distributions. Prior distributions on coefficients are
from Zellner's g-prior or mixtures of g-priors
corresponding to the Zellner-Siow Cauchy Priors or the
mixture of g-priors from Liang et al (2008)
<DOI:10.1198/016214507000001337>
for linear models or mixtures of g-priors from Li and Clyde
(2019) <DOI:10.1080/01621459.2018.1469992> in generalized linear models.
Other model selection criteria include AIC, BIC and Empirical Bayes
estimates of g. Sampling probabilities may be updated based on the sampled
models using sampling w/out replacement or an efficient MCMC algorithm which
samples models using a tree structure of the model space
as an efficient hash table. See Clyde, Ghosh and Littman (2010)
<DOI:10.1198/jcgs.2010.09049> for details on the sampling algorithms.
Uniform prior [...truncated...]
Author: Merlise Clyde [aut, cre, cph] ,
Michael Littman [ctb],
Joyee Ghosh [ctb],
Yingbo Li [ctb],
Betsy Bersson [ctb],
Don van de Bergh [ctb],
Quanli Wang [ctb]
Maintainer: Merlise Clyde <clyde@duke.edu>
Diff between BAS versions 2.0.0 dated 2025-12-16 and 2.0.2 dated 2025-12-23
DESCRIPTION | 6 +- MD5 | 38 ++++++------ NEWS.md | 13 ++++ inst/doc/BAS-vignette.html | 132 ++++++++++++++++++++++----------------------- man/tr.power.prior.Rd | 10 +-- src/glm_deterministic.c | 14 ++++ src/glm_mcmc.c | 10 +++ src/glm_mcmc_grow.c | 9 +++ src/glm_mcmcbas.c | 8 ++ src/glm_sampleworep.c | 12 ++++ src/glm_sampleworep_grow.c | 13 ++++ src/lm_amcmc.c | 13 ++++ src/lm_amcmc_growable.c | 18 ++++-- src/lm_deterministic.c | 10 +++ src/lm_mcmc.c | 14 ++++ src/lm_mcmc_grow.c | 10 +++ src/lm_mcmcbas.c | 14 ++++ src/lm_sampleworep-grow.c | 11 +++ src/lm_sampleworep.c | 11 +++ src/model_probabilities.c | 7 +- 20 files changed, 263 insertions(+), 110 deletions(-)
Title: Hierarchical Methods for Differential Equations
Description: Wrapper for 'Stan' that offers a number of in-built models to implement a hierarchical Bayesian longitudinal model for repeat observation data. Model choice selects the differential equation that is fit to the observations. Single and multi-individual models are available. O'Brien et al. (2024) <doi:10.1111/2041-210X.14463>.
Author: Daniel Falster [aut, ctb] ,
Tess O'Brien [aut, cre, cph] ,
Fonti Kar [ctb] ,
David Warton [aut, ctb]
Maintainer: Tess O'Brien <tess_obrien@fastmail.com>
Diff between hmde versions 1.3 dated 2025-11-26 and 1.3.1 dated 2025-12-22
DESCRIPTION | 6 - MD5 | 14 +- NEWS.md | 6 - inst/doc/canham.html | 2 inst/doc/constant-growth.html | 180 +++++++++++++++++----------------- inst/doc/here_be_dragons.html | 24 ++-- inst/doc/hmde_for_mathematicians.html | 4 inst/doc/von-bertalanffy.html | 79 +++++++------- 8 files changed, 155 insertions(+), 160 deletions(-)
Title: Apply Functions to All Combinations of List Elements
Description: Provides an extension to the 'purrr' family of mapping
functions to apply a function to each combination of elements in a
list of inputs. Also includes functions for automatically detecting
output type in mapping functions, finding every combination of
elements of lists or rows of data frames, and applying multiple models
to multiple subsets of a dataset.
Author: Alexander Rossell Hayes [aut, cre, cph]
Maintainer: Alexander Rossell Hayes <alexander@rossellhayes.com>
Diff between crossmap versions 0.4.2 dated 2025-04-25 and 0.4.3 dated 2025-12-22
DESCRIPTION | 18 +++++++++--------- MD5 | 10 +++++----- NEWS.md | 4 ++++ R/errors.R | 7 +++---- man/cross_fit_robust.Rd | 2 +- man/crossmap-package.Rd | 2 +- 6 files changed, 23 insertions(+), 20 deletions(-)
Title: CAESAR: a Cross-Technology and Cross-Resolution Framework for
Spatial Omics Annotation
Description: Biotechnology in spatial omics has advanced rapidly over the past few years, enhancing both throughput and resolution. However, existing annotation pipelines in spatial omics predominantly rely on clustering methods, lacking the flexibility to integrate extensive annotated information from single-cell RNA sequencing (scRNA-seq) due to discrepancies in spatial resolutions, species, or modalities. Here we introduce the CAESAR suite, an open-source software package that provides image-based spatial co-embedding of locations and genomic features. It uniquely transfers labels from scRNA-seq reference, enabling the annotation of spatial omics datasets across different technologies, resolutions, species, and modalities, based on the conserved relationship between signature genes and cells/locations at an appropriate level of granularity. Notably, CAESAR enriches location-level pathways, allowing for the detection of gradual biological pathway activation within spatially defined domain types. [...truncated...]
Author: Xiao Zhang [aut, cre],
Wei Liu [aut],
Jin Liu [aut]
Maintainer: Xiao Zhang <zhangxiao1994@cuhk.edu.cn>
Diff between CAESAR.Suite versions 0.2.3 dated 2025-11-07 and 0.3.0 dated 2025-12-22
DESCRIPTION | 6 +++--- MD5 | 24 ++++++++++++------------ R/caesar.R | 6 +++--- R/caesar_annotation.R | 8 ++++---- R/caesar_enrichscore.R | 2 +- R/caesar_image.R | 2 +- R/ruv.R | 4 ++-- R/utilities.r | 1 + README.md | 1 + inst/doc/STMOB.html | 6 +++--- inst/doc/XeniumBC.html | 6 +++--- man/annotation_mat.Rd | 2 +- man/cellembedding_matrix.Rd | 2 +- 13 files changed, 36 insertions(+), 34 deletions(-)
Title: Data Quality in Epidemiological Research
Description: Data quality assessments guided by a
'data quality framework introduced by Schmidt and colleagues, 2021'
<doi:10.1186/s12874-021-01252-7> target the
data quality dimensions integrity, completeness, consistency, and
accuracy. The scope of applicable functions rests on the
availability of extensive metadata which can be provided in
spreadsheet tables. Either standardized (e.g. as 'html5' reports) or
individually tailored reports can be generated. For an introduction
into the specification of corresponding metadata, please refer to the
'package website'
<https://dataquality.qihs.uni-greifswald.de/VIN_Annotation_of_Metadata.html>.
Author: University Medicine Greifswald [cph],
Elisa Kasbohm [aut] ,
Elena Salogni [aut] ,
Joany Marino [aut] ,
Adrian Richter [aut] ,
Carsten Oliver Schmidt [aut] ,
Stephan Struckmann [aut, cre] ,
German Research Foundation [fnd],
National Research Data Inf [...truncated...]
Maintainer: Stephan Struckmann <stephan.struckmann@uni-greifswald.de>
Diff between dataquieR versions 2.5.1 dated 2025-03-05 and 2.8.2 dated 2025-12-22
dataquieR-2.5.1/dataquieR/R/util_anytime_installed.R |only dataquieR-2.5.1/dataquieR/man/LONG_LABEL_EXCEPTION.Rd |only dataquieR-2.5.1/dataquieR/man/N_RULES.Rd |only dataquieR-2.5.1/dataquieR/man/UNIVARIATE_OUTLIER_CHECKTYPE.Rd |only dataquieR-2.5.1/dataquieR/man/cash-.dataquieR_result.Rd |only dataquieR-2.5.1/dataquieR/man/dataquieR.progress_fkt.Rd |only dataquieR-2.5.1/dataquieR/man/dataquieR.progress_msg_fkt.Rd |only dataquieR-2.5.1/dataquieR/man/dot-.indicator_or_descriptor.Rd |only dataquieR-2.5.1/dataquieR/man/dot-.manual.Rd |only dataquieR-2.5.1/dataquieR/man/dot-access_dq_rs2-set.Rd |only dataquieR-2.5.1/dataquieR/man/dot-access_dq_rs2.Rd |only dataquieR-2.5.1/dataquieR/man/dot-util_internal_normalize_meta_data.Rd |only dataquieR-2.5.1/dataquieR/man/figures |only dataquieR-2.5.1/dataquieR/man/menu_env.Rd |only dataquieR-2.5.1/dataquieR/man/meta_data_env_criteria.Rd |only dataquieR-2.5.1/dataquieR/man/meta_data_env_group_vars.Rd |only 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dataquieR-2.5.1/dataquieR/man/util_ensure_suggested.Rd |only dataquieR-2.5.1/dataquieR/man/util_error.Rd |only dataquieR-2.5.1/dataquieR/man/util_eval_rule.Rd |only dataquieR-2.5.1/dataquieR/man/util_eval_to_dataquieR_result.Rd |only dataquieR-2.5.1/dataquieR/man/util_evaluate_calls.Rd |only dataquieR-2.5.1/dataquieR/man/util_expect_data_frame.Rd |only dataquieR-2.5.1/dataquieR/man/util_expect_scalar.Rd |only dataquieR-2.5.1/dataquieR/man/util_extract_all_ids.Rd |only dataquieR-2.5.1/dataquieR/man/util_extract_indicator_metrics.Rd |only dataquieR-2.5.1/dataquieR/man/util_extract_matches.Rd |only dataquieR-2.5.1/dataquieR/man/util_filter_missing_list_table_for_rv.Rd |only dataquieR-2.5.1/dataquieR/man/util_filter_names_by_regexps.Rd |only dataquieR-2.5.1/dataquieR/man/util_finalize_sizing_hints.Rd |only dataquieR-2.5.1/dataquieR/man/util_find_external_functions_in_stacktrace.Rd |only dataquieR-2.5.1/dataquieR/man/util_find_first_externally_called_functions_in_stacktrace.Rd |only 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dataquieR-2.8.2/dataquieR/R/prep_summary_to_classes.R | 9 dataquieR-2.8.2/dataquieR/R/print.ReportSummaryTable.R | 95 dataquieR-2.8.2/dataquieR/R/print.dataquieR_result.R | 91 dataquieR-2.8.2/dataquieR/R/print.dataquieR_resultset2.R | 810 + dataquieR-2.8.2/dataquieR/R/print.dataquieR_summary.R | 15 dataquieR-2.8.2/dataquieR/R/print.interval.R | 19 dataquieR-2.8.2/dataquieR/R/pro_applicability_matrix.R | 50 dataquieR-2.8.2/dataquieR/R/reflection.R | 6 dataquieR-2.8.2/dataquieR/R/summary.dataquieR_resultset2.R | 6 dataquieR-2.8.2/dataquieR/R/util_3SD.R | 2 dataquieR-2.8.2/dataquieR/R/util_abbreviate.R | 2 dataquieR-2.8.2/dataquieR/R/util_acc_loess_bin.R | 124 dataquieR-2.8.2/dataquieR/R/util_acc_loess_continuous.R | 173 dataquieR-2.8.2/dataquieR/R/util_acc_varcomp.R | 2 dataquieR-2.8.2/dataquieR/R/util_add_computed_internals.R |only dataquieR-2.8.2/dataquieR/R/util_adjust_data_type.R | 44 dataquieR-2.8.2/dataquieR/R/util_adjust_geom_text_for_plotly.R | 21 dataquieR-2.8.2/dataquieR/R/util_alias2caption.R | 4 dataquieR-2.8.2/dataquieR/R/util_align_colnames_case.R |only dataquieR-2.8.2/dataquieR/R/util_all_ind_functions.R | 2 dataquieR-2.8.2/dataquieR/R/util_all_intro_vars_for_rv.R | 2 dataquieR-2.8.2/dataquieR/R/util_all_is_integer.R | 4 dataquieR-2.8.2/dataquieR/R/util_amend_missing_metadata.R |only dataquieR-2.8.2/dataquieR/R/util_app_cd.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_con_contradictions_redcap.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_dc.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_dl.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_ed.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_hl.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_iac.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_iav.R | 4 dataquieR-2.8.2/dataquieR/R/util_app_im.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_loess.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_mar.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_mol.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_ol.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_sl.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_sm.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_sos.R | 2 dataquieR-2.8.2/dataquieR/R/util_app_vc.R | 2 dataquieR-2.8.2/dataquieR/R/util_as_cat.R | 4 dataquieR-2.8.2/dataquieR/R/util_as_character.R |only dataquieR-2.8.2/dataquieR/R/util_as_numeric.R | 2 dataquieR-2.8.2/dataquieR/R/util_as_numeric_with_unit.R |only dataquieR-2.8.2/dataquieR/R/util_as_valid_missing_codes.R | 13 dataquieR-2.8.2/dataquieR/R/util_assign_levlabs.R | 2 dataquieR-2.8.2/dataquieR/R/util_attach_attr.R | 2 dataquieR-2.8.2/dataquieR/R/util_avail_ram.R |only dataquieR-2.8.2/dataquieR/R/util_bQuote.R | 4 dataquieR-2.8.2/dataquieR/R/util_backtickQuote.R | 4 dataquieR-2.8.2/dataquieR/R/util_bar_plot.R | 86 dataquieR-2.8.2/dataquieR/R/util_cast_off.R | 14 dataquieR-2.8.2/dataquieR/R/util_check_data_type.R | 28 dataquieR-2.8.2/dataquieR/R/util_check_group_levels.R | 2 dataquieR-2.8.2/dataquieR/R/util_check_one_unique_value.R | 2 dataquieR-2.8.2/dataquieR/R/util_cll_nm2fkt_nm.R | 20 dataquieR-2.8.2/dataquieR/R/util_col2rgb.R | 2 dataquieR-2.8.2/dataquieR/R/util_col_description.R | 2 dataquieR-2.8.2/dataquieR/R/util_collapse_msgs.R | 2 dataquieR-2.8.2/dataquieR/R/util_combine_list_report_summaries.R | 1 dataquieR-2.8.2/dataquieR/R/util_combine_res.R | 7 dataquieR-2.8.2/dataquieR/R/util_compare_meta_with_study.R | 13 dataquieR-2.8.2/dataquieR/R/util_compress.R |only dataquieR-2.8.2/dataquieR/R/util_compress_ggplots_in_res.R | 15 dataquieR-2.8.2/dataquieR/R/util_condition_constructor_factory.R | 37 dataquieR-2.8.2/dataquieR/R/util_conversion_stable.R | 13 dataquieR-2.8.2/dataquieR/R/util_coord_flip.R | 89 dataquieR-2.8.2/dataquieR/R/util_copy_all_deps.R | 17 dataquieR-2.8.2/dataquieR/R/util_correct_variable_use.R | 18 dataquieR-2.8.2/dataquieR/R/util_count_expected_observations.R | 2 dataquieR-2.8.2/dataquieR/R/util_create_lean_ggplot.R |only dataquieR-2.8.2/dataquieR/R/util_create_page_file.R | 18 dataquieR-2.8.2/dataquieR/R/util_create_report_by_overview.R | 29 dataquieR-2.8.2/dataquieR/R/util_dashboard_table.R | 2 dataquieR-2.8.2/dataquieR/R/util_data_type_conversion.R | 18 dataquieR-2.8.2/dataquieR/R/util_deparse1.R | 2 dataquieR-2.8.2/dataquieR/R/util_des_functions_env.R |only dataquieR-2.8.2/dataquieR/R/util_detect_cores.R | 18 dataquieR-2.8.2/dataquieR/R/util_df_escape.R | 2 dataquieR-2.8.2/dataquieR/R/util_dichotomize.R | 2 dataquieR-2.8.2/dataquieR/R/util_disjunct_var_sets.R |only dataquieR-2.8.2/dataquieR/R/util_dist_selection.R | 2 dataquieR-2.8.2/dataquieR/R/util_ds1_eval_env.R | 2 dataquieR-2.8.2/dataquieR/R/util_duplicated_inclding_first.R |only dataquieR-2.8.2/dataquieR/R/util_empty.R | 2 dataquieR-2.8.2/dataquieR/R/util_ensure_character.R | 4 dataquieR-2.8.2/dataquieR/R/util_ensure_in.R | 2 dataquieR-2.8.2/dataquieR/R/util_ensure_label.R | 87 dataquieR-2.8.2/dataquieR/R/util_ensure_suggested.R | 2 dataquieR-2.8.2/dataquieR/R/util_error.R | 2 dataquieR-2.8.2/dataquieR/R/util_eval_rule.R | 11 dataquieR-2.8.2/dataquieR/R/util_eval_to_dataquieR_result.R | 290 dataquieR-2.8.2/dataquieR/R/util_evaluate_calls.R | 365 dataquieR-2.8.2/dataquieR/R/util_expect_data_frame.R | 2 dataquieR-2.8.2/dataquieR/R/util_expect_scalar.R | 2 dataquieR-2.8.2/dataquieR/R/util_extract_all_ids.R | 2 dataquieR-2.8.2/dataquieR/R/util_extract_indicator_metrics.R | 2 dataquieR-2.8.2/dataquieR/R/util_extract_matches.R | 2 dataquieR-2.8.2/dataquieR/R/util_extract_named_groups.R |only dataquieR-2.8.2/dataquieR/R/util_filter_missing_list_table_for_rv.R | 2 dataquieR-2.8.2/dataquieR/R/util_filter_names_by_regexps.R | 2 dataquieR-2.8.2/dataquieR/R/util_filter_repsum.R |only dataquieR-2.8.2/dataquieR/R/util_finalize_sizing_hints.R | 4 dataquieR-2.8.2/dataquieR/R/util_find_external_functions_in_stacktrace.R | 2 dataquieR-2.8.2/dataquieR/R/util_find_first_externally_called_functions_in_stacktrace.R | 2 dataquieR-2.8.2/dataquieR/R/util_find_free_missing_code.R | 14 dataquieR-2.8.2/dataquieR/R/util_find_indicator_function_in_callers.R | 2 dataquieR-2.8.2/dataquieR/R/util_find_var_by_meta.R | 2 dataquieR-2.8.2/dataquieR/R/util_fix_merge_dups.R | 5 dataquieR-2.8.2/dataquieR/R/util_fix_rstudio_bugs.R | 2 dataquieR-2.8.2/dataquieR/R/util_float_index_menu.R | 2 dataquieR-2.8.2/dataquieR/R/util_formattable.R | 4 dataquieR-2.8.2/dataquieR/R/util_free_varname.R |only dataquieR-2.8.2/dataquieR/R/util_function_description.R | 2 dataquieR-2.8.2/dataquieR/R/util_generate_anchor_tag.R | 4 dataquieR-2.8.2/dataquieR/R/util_generate_calls.R | 14 dataquieR-2.8.2/dataquieR/R/util_generate_calls_for_function.R | 2 dataquieR-2.8.2/dataquieR/R/util_generate_pages_from_report.R | 649 + dataquieR-2.8.2/dataquieR/R/util_generate_table_indicators_descriptors.R | 2 dataquieR-2.8.2/dataquieR/R/util_get_category_for_result.R | 4 dataquieR-2.8.2/dataquieR/R/util_get_code_list.R | 21 dataquieR-2.8.2/dataquieR/R/util_get_colors.R | 2 dataquieR-2.8.2/dataquieR/R/util_get_combined_code_lists.R | 4 dataquieR-2.8.2/dataquieR/R/util_get_concept_info.R | 4 dataquieR-2.8.2/dataquieR/R/util_get_dataquieR_result.R | 8 dataquieR-2.8.2/dataquieR/R/util_get_encoding.R | 1 dataquieR-2.8.2/dataquieR/R/util_get_fg_color.R | 2 dataquieR-2.8.2/dataquieR/R/util_get_hovertext.R | 2 dataquieR-2.8.2/dataquieR/R/util_get_labels_grading_class.R | 2 dataquieR-2.8.2/dataquieR/R/util_get_message_for_result.R | 2 dataquieR-2.8.2/dataquieR/R/util_get_redcap_rule_env.R | 530 dataquieR-2.8.2/dataquieR/R/util_get_rule_sets.R | 9 dataquieR-2.8.2/dataquieR/R/util_get_ruleset_formats.R | 6 dataquieR-2.8.2/dataquieR/R/util_get_thresholds.R | 2 dataquieR-2.8.2/dataquieR/R/util_get_var_att_names_of_level.R | 2 dataquieR-2.8.2/dataquieR/R/util_get_vars_in_segment.R | 2 dataquieR-2.8.2/dataquieR/R/util_get_voc_tab.R | 2 dataquieR-2.8.2/dataquieR/R/util_gg_get.R |only dataquieR-2.8.2/dataquieR/R/util_gg_var_label.R | 54 dataquieR-2.8.2/dataquieR/R/util_ggplot_text.R |only dataquieR-2.8.2/dataquieR/R/util_handle_complex_data_types.R |only dataquieR-2.8.2/dataquieR/R/util_has_no_group_vars.R | 1 dataquieR-2.8.2/dataquieR/R/util_heatmap_1th.R | 4 dataquieR-2.8.2/dataquieR/R/util_hide_file_windows.R | 2 dataquieR-2.8.2/dataquieR/R/util_histogram.R | 110 dataquieR-2.8.2/dataquieR/R/util_html_attr_quote_escape.R | 2 dataquieR-2.8.2/dataquieR/R/util_html_for_dims.R | 314 dataquieR-2.8.2/dataquieR/R/util_html_for_var.R | 111 dataquieR-2.8.2/dataquieR/R/util_html_table.R | 35 dataquieR-2.8.2/dataquieR/R/util_hubert.R | 2 dataquieR-2.8.2/dataquieR/R/util_iframe_it_if_needed.R | 282 dataquieR-2.8.2/dataquieR/R/util_init_respum_tab.R | 2 dataquieR-2.8.2/dataquieR/R/util_int_breaks_rounded.R | 2 dataquieR-2.8.2/dataquieR/R/util_int_unexp_records_set_segment.R | 5 dataquieR-2.8.2/dataquieR/R/util_interpret_limits.R | 90 dataquieR-2.8.2/dataquieR/R/util_is_integer.R | 2 dataquieR-2.8.2/dataquieR/R/util_is_na_0_empty_or_false.R | 32 dataquieR-2.8.2/dataquieR/R/util_is_numeric_in.R | 6 dataquieR-2.8.2/dataquieR/R/util_is_time_only.R |only dataquieR-2.8.2/dataquieR/R/util_is_try_error.R | 4 dataquieR-2.8.2/dataquieR/R/util_is_valid_missing_codes.R | 8 dataquieR-2.8.2/dataquieR/R/util_isolate_function.R |only dataquieR-2.8.2/dataquieR/R/util_lazy_ggplot.R |only dataquieR-2.8.2/dataquieR/R/util_looks_like_missing.R | 2 dataquieR-2.8.2/dataquieR/R/util_make_data_slot_from_table_slot.R | 103 dataquieR-2.8.2/dataquieR/R/util_map_all.R | 24 dataquieR-2.8.2/dataquieR/R/util_map_by_largest_prefix.R | 2 dataquieR-2.8.2/dataquieR/R/util_map_labels.R | 2 dataquieR-2.8.2/dataquieR/R/util_map_to_other_metrics.R |only dataquieR-2.8.2/dataquieR/R/util_margins_bin.R | 220 dataquieR-2.8.2/dataquieR/R/util_margins_lm.R | 232 dataquieR-2.8.2/dataquieR/R/util_margins_nom.R | 35 dataquieR-2.8.2/dataquieR/R/util_margins_ord.R | 47 dataquieR-2.8.2/dataquieR/R/util_margins_poi.R | 188 dataquieR-2.8.2/dataquieR/R/util_match_arg.R | 2 dataquieR-2.8.2/dataquieR/R/util_merge_data_frame_list.R | 2 dataquieR-2.8.2/dataquieR/R/util_message.R | 2 dataquieR-2.8.2/dataquieR/R/util_no_value_labels.R | 2 dataquieR-2.8.2/dataquieR/R/util_normalize_clt.R | 2 dataquieR-2.8.2/dataquieR/R/util_normalize_cross_item.R | 54 dataquieR-2.8.2/dataquieR/R/util_normalize_time_only_columns.R |only dataquieR-2.8.2/dataquieR/R/util_normalize_value_labels.R | 4 dataquieR-2.8.2/dataquieR/R/util_observation_expected.R | 2 dataquieR-2.8.2/dataquieR/R/util_observations_in_subgroups.R | 4 dataquieR-2.8.2/dataquieR/R/util_online_ref.R | 2 dataquieR-2.8.2/dataquieR/R/util_optimize_histogram_bins.R | 33 dataquieR-2.8.2/dataquieR/R/util_optimize_sequence_across_time_var.R | 8 dataquieR-2.8.2/dataquieR/R/util_order_of_indicator_metrics.R |only dataquieR-2.8.2/dataquieR/R/util_pairs_matrix.R |only dataquieR-2.8.2/dataquieR/R/util_par_lapply_lb.R |only 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Title: A Toolkit for Connecting R and Large Language Models
Description: A complete toolkit for connecting 'R' environments with Large
Language Models (LLMs). Provides utilities for describing 'R' objects,
package documentation, and workspace state in plain text formats
optimized for LLM consumption. Supports multiple workflows:
interactive copy-paste to external chat interfaces, programmatic tool
registration with 'ellmer' chat clients, batteries-included chat
applications via 'shinychat', and exposure to external coding agents
through the Model Context Protocol. Project configuration files enable
stable, repeatable conversations with project-specific context and
preferred LLM settings.
Author: Garrick Aden-Buie [aut, cre] ,
Simon Couch [aut] ,
Joe Cheng [aut],
Posit Software, PBC [cph, fnd],
Google [cph] ,
Microsoft [cph] ,
Jamie Perkins [cph]
Maintainer: Garrick Aden-Buie <garrick@adenbuie.com>
Diff between btw versions 1.0.0 dated 2025-11-04 and 1.1.0 dated 2025-12-22
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Title: Hardware-Accelerated Rerandomization for Improved Balance
Description: Provides hardware-accelerated tools for performing rerandomization
and randomization testing in experimental research. Using a 'JAX' backend, the
package enables exact rerandomization inference even for large experiments
with hundreds of billions of possible randomizations. Key functionalities
include generating pools of acceptable rerandomizations based on covariate
balance, conducting exact randomization tests, and performing pre-analysis
evaluations to determine optimal rerandomization acceptance thresholds. The
package supports various hardware acceleration frameworks including 'CPU',
'CUDA', and 'METAL', making it versatile across accelerated computing environments. This
allows researchers to efficiently implement stringent rerandomization designs and
conduct valid inference even with large sample sizes. The package is partly based on Jerzak and Goldstein (2023) <doi:10.48550/arXiv.2310.00861>.
Author: Fucheng Warren Zhu [aut] ,
Aniket Sachin Kamat [aut] ,
Connor Jerzak [aut, cre] ,
Rebecca Goldstein [aut]
Maintainer: Connor Jerzak <connor.jerzak@gmail.com>
Diff between fastrerandomize versions 0.2 dated 2025-01-14 and 0.3 dated 2025-12-22
DESCRIPTION | 20 +++-- MD5 | 68 ++++++++++------- NAMESPACE | 14 +++ NEWS.md |only R/FRR_BaseRFxns.R |only R/FRR_BuildBackend.R | 82 ++++++++++++++++---- R/FRR_Diagnostics.R |only R/FRR_Dist.R |only R/FRR_GenerateRandomizations.R | 32 ++++---- R/FRR_GenerateRandomizations_Exact.R | 26 +++--- R/FRR_GenerateRandomizations_MonteCarlo.R | 34 ++++---- R/FRR_HelperFxns.R | 7 + R/FRR_InitializeJAX.R | 110 +++++++++++++++++++++++++++- R/FRR_QJEData.R | 2 R/FRR_RandomizationTest.R | 61 +++++---------- R/FRR_S3Constructors.R | 32 ++++---- build/vignette.rds |binary data/QJEData.RData |binary data/YOPData.RData |binary inst/CITATION | 16 ++-- inst/doc/MainVignette.R | 6 - inst/doc/MainVignette.Rmd | 14 +-- inst/doc/MainVignette.html | 36 ++++----- man/QJEData.Rd | 2 man/build_backend.Rd | 10 +- man/check_jax_availability.Rd | 4 - man/compute_diff_at_tau_for_oneW_R.Rd |only man/diagnose_rerandomization.Rd |only man/diff_in_means_R.Rd |only man/fast_distance.Rd |only man/find_fiducial_interval_R.Rd |only man/generate_randomizations.Rd | 4 - man/generate_randomizations_R.Rd |only man/generate_randomizations_exact.Rd | 4 - man/generate_randomizations_mc.Rd | 4 - man/hotellingT2_R.Rd |only man/plot.fastrerandomize_randomizations.Rd | 7 - man/print.fastrerandomize_randomizations.Rd | 2 man/randomization_test.Rd | 46 +---------- man/randomization_test_R.Rd |only vignettes/MainVignette.Rmd | 14 +-- 41 files changed, 400 insertions(+), 257 deletions(-)
More information about fastrerandomize at CRAN
Permanent link
Title: Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Description: Tools to analyze the embryo growth and the sexualisation thermal reaction norms. See <doi:10.7717/peerj.8451> for tsd functions; see <doi:10.1016/j.jtherbio.2014.08.005> for thermal reaction norm of embryo growth.
Author: Marc Girondot [aut, cre]
Maintainer: Marc Girondot <marc.girondot@gmail.com>
Diff between embryogrowth versions 10.4 dated 2025-09-10 and 2025.12.22 dated 2025-12-22
DESCRIPTION | 8 +- MD5 | 44 ++++++------- NEWS | 8 ++ R/HeterogeneityNests.R | 85 +++++++++++++++---------- R/P_TRT.R | 23 ++++-- R/embryogrowth-package.R | 4 - R/modelTSD.R | 9 ++ R/plot.tsd.R | 17 +++-- R/plotR.R | 3 R/tsd.R | 142 +++++++++++++++++++++++-------------------- R/tsd_MHmcmc.R | 1 R/tsd_MHmcmc_p.R | 4 + R/tsd_fit.R | 4 - build/partial.rdb |binary data/DatabaseNestingArea.rda |binary data/DatabaseTSD.rda |binary data/ROSIE.rda |binary data/TSP.list.rda |binary data/stages.rda |binary man/HeterogeneityNests.Rd | 8 +- man/embryogrowth-package.Rd | 4 - man/figures/E.png |binary man/tsd.Rd | 14 +++- 23 files changed, 224 insertions(+), 154 deletions(-)
Title: Spatial Bayesian Methods for Task Functional MRI Studies
Description: Performs a spatial Bayesian general linear model (GLM) for task
functional magnetic resonance imaging (fMRI) data on the cortical surface.
Additional models include group analysis and inference to detect thresholded
areas of activation. Includes direct support for the 'CIFTI' neuroimaging
file format. For more information see A. F. Mejia, Y. R. Yue, D. Bolin, F.
Lindgren, M. A. Lindquist (2020) <doi:10.1080/01621459.2019.1611582> and D.
Spencer, Y. R. Yue, D. Bolin, S. Ryan, A. F. Mejia (2022)
<doi:10.1016/j.neuroimage.2022.118908>.
Author: Amanda Mejia [aut, cre],
Damon Pham [ctb] ,
David Bolin [ctb],
Yu Yue [ctb],
Daniel Spencer [aut] ,
Sarah Ryan [ctb]
Maintainer: Amanda Mejia <mandy.mejia@gmail.com>
Diff between BayesfMRI versions 0.10.1 dated 2025-03-07 and 0.11.0 dated 2025-12-22
DESCRIPTION | 12 ++++++------ MD5 | 34 ++++++++++++++++++---------------- NEWS.md | 6 ++++++ R/BayesGLM.R | 4 ++-- R/GLM_est_resid_var_pw.R | 2 +- R/fit_bayesglm.R | 4 +--- R/fit_bayesglm_utils.R | 2 +- R/onAttach.R |only R/rox_args_docs.R | 4 +++- R/scale_BOLD.R | 3 ++- R/util.R | 14 +++++++++++--- README.md | 18 +++++++++++++----- build/partial.rdb |binary man/BayesGLM.Rd | 8 +++++--- man/do_QC.Rd | 8 ++++++-- man/dot-onAttach.Rd |only man/fit_bayesglm.Rd | 6 ++++-- man/mean_var_Tol_Param.Rd | 4 +++- man/scale_BOLD.Rd | 3 ++- 19 files changed, 84 insertions(+), 48 deletions(-)
Title: Quantile-Quantile Plot with Several Gaussian Simulations
Description: Plots a QQ-Norm Plot with several Gaussian simulations.
Author: Matthias Salvisberg [aut, cre]
Maintainer: Matthias Salvisberg <matthias.salvisberg@gmail.com>
Diff between StMoSim versions 3.1.1 dated 2018-11-19 and 3.2.0 dated 2025-12-22
DESCRIPTION | 20 ++++++++++++-------- MD5 | 17 +++++++++-------- R/StMoSim.R | 6 +++++- README.md |only man/StMoSim.Rd | 13 ++++++++++++- man/qqnormSim.Rd | 49 ++++++++++++++++++++++++++++++++++++------------- src/Makevars | 1 - src/Makevars.win | 1 - src/RcppExports.cpp | 5 +++++ src/qqnormSim.cpp | 1 - 10 files changed, 79 insertions(+), 34 deletions(-)
Title: Date and Time Extensions for the 'rebus' Package
Description: Build regular expressions piece by piece using human readable code.
This package contains date and time functionality, and is primarily intended
to be used by package developers.
Author: Richard Cotton [aut, cre]
Maintainer: Richard Cotton <richierocks@gmail.com>
Diff between rebus.datetimes versions 0.0-2 dated 2022-11-03 and 0.0-2.1 dated 2025-12-22
DESCRIPTION | 8 ++++---- MD5 | 6 +++--- R/datetime.R | 2 +- man/DateTime.Rd | 2 +- 4 files changed, 9 insertions(+), 9 deletions(-)
More information about rebus.datetimes at CRAN
Permanent link
Title: Kendall Rank Correlation and Mann-Kendall Trend Test
Description: Computes the Kendall rank correlation and Mann-Kendall
trend test. See documentation for use of block bootstrap when
there is autocorrelation.
Author: A.I. McLeod [aut, cre]
Maintainer: A.I. McLeod <aimcleod@uwo.ca>
Diff between Kendall versions 2.2.1 dated 2022-03-20 and 2.2.2 dated 2025-12-22
DESCRIPTION | 14 +++++++++----- MD5 | 8 ++++---- data/GuelphP.rda |binary data/PrecipGL.rda |binary man/MannKendall.Rd | 2 +- 5 files changed, 14 insertions(+), 10 deletions(-)
Title: Dyadic Structural Equation Modeling
Description: Scripting of structural equation models via 'lavaan' for
Dyadic Data Analysis, and helper functions for supplemental
calculations, tabling, and model visualization.
Author: John Sakaluk [aut, cre, cph] ,
Omar Camanto [aut] ,
Christopher Quinn-Nilas [ctb] ,
Merissa Prine [ctb],
Robyn Kilshaw [ctb],
Alexandra Fisher [ctb]
Maintainer: John Sakaluk <jksakaluk@gmail.com>
Diff between dySEM versions 1.1.1 dated 2025-01-07 and 1.4.1 dated 2025-12-22
dySEM-1.1.1/dySEM/R/semHelpers.R |only dySEM-1.4.1/dySEM/DESCRIPTION | 34 dySEM-1.4.1/dySEM/MD5 | 152 dySEM-1.4.1/dySEM/NAMESPACE | 5 dySEM-1.4.1/dySEM/NEWS.md | 41 dySEM-1.4.1/dySEM/R/getConstraintTests.R | 6 dySEM-1.4.1/dySEM/R/getDyReliability.R | 4 dySEM-1.4.1/dySEM/R/getDydmacs.R | 2 dySEM-1.4.1/dySEM/R/getIndistFit.R | 95 dySEM-1.4.1/dySEM/R/getInvarCompTable.R | 124 dySEM-1.4.1/dySEM/R/imsM-data.R |only dySEM-1.4.1/dySEM/R/outHelpers.R | 98 dySEM-1.4.1/dySEM/R/outputConstraintTab.R | 157 dySEM-1.4.1/dySEM/R/outputHelpers.R |only dySEM-1.4.1/dySEM/R/outputInvarCompTab.R | 201 - dySEM-1.4.1/dySEM/R/outputModel.R | 4 dySEM-1.4.1/dySEM/R/outputParamFig.R | 123 dySEM-1.4.1/dySEM/R/outputParamTab.R | 1023 +++-- dySEM-1.4.1/dySEM/R/outputUniConstructComp.R |only dySEM-1.4.1/dySEM/R/pnrqM-data.R |only dySEM-1.4.1/dySEM/R/prqcQ-data.R |only dySEM-1.4.1/dySEM/R/scrapeHelpers.R | 62 dySEM-1.4.1/dySEM/R/scrapeVarCross.R | 340 + dySEM-1.4.1/dySEM/R/scriptAPIM.R | 588 +-- dySEM-1.4.1/dySEM/R/scriptBiDy.R | 6 dySEM-1.4.1/dySEM/R/scriptBifac.R |only dySEM-1.4.1/dySEM/R/scriptCFA.R | 440 +- dySEM-1.4.1/dySEM/R/scriptCFM.R | 19 dySEM-1.4.1/dySEM/R/scriptCor.R |only dySEM-1.4.1/dySEM/R/scriptDyEFA.R | 34 dySEM-1.4.1/dySEM/R/scriptHelpers.R | 631 +++ dySEM-1.4.1/dySEM/R/scriptHier.R |only dySEM-1.4.1/dySEM/R/scriptINULL.R | 111 dySEM-1.4.1/dySEM/R/scriptISAT.R | 2 dySEM-1.4.1/dySEM/R/scriptMIM.R | 6 dySEM-1.4.1/dySEM/R/scriptUni.R |only dySEM-1.4.1/dySEM/R/startup.R | 7 dySEM-1.4.1/dySEM/README.md | 68 dySEM-1.4.1/dySEM/build/vignette.rds |binary dySEM-1.4.1/dySEM/data/imsM.rda |only dySEM-1.4.1/dySEM/data/pnrqM.rda |only dySEM-1.4.1/dySEM/data/prqcQ.rda |only dySEM-1.4.1/dySEM/inst/doc/dySEM.R | 10 dySEM-1.4.1/dySEM/inst/doc/dySEM.Rmd | 28 dySEM-1.4.1/dySEM/inst/doc/dySEM.html | 179 - dySEM-1.4.1/dySEM/inst/doc/varnames.html | 5 dySEM-1.4.1/dySEM/man/getConstraintTests.Rd | 2 dySEM-1.4.1/dySEM/man/getDyReliability.Rd | 4 dySEM-1.4.1/dySEM/man/getDydmacs.Rd | 2 dySEM-1.4.1/dySEM/man/getIndistFit.Rd | 28 dySEM-1.4.1/dySEM/man/getInvarCompTable.Rd | 70 dySEM-1.4.1/dySEM/man/imsM.Rd |only dySEM-1.4.1/dySEM/man/outputConstraintTab.Rd | 26 dySEM-1.4.1/dySEM/man/outputInvarCompTab.Rd | 91 dySEM-1.4.1/dySEM/man/outputModel.Rd | 2 dySEM-1.4.1/dySEM/man/outputParamFig.Rd | 60 dySEM-1.4.1/dySEM/man/outputParamTab.Rd | 62 dySEM-1.4.1/dySEM/man/outputUniConstructComp.Rd |only dySEM-1.4.1/dySEM/man/pnrqM.Rd |only dySEM-1.4.1/dySEM/man/prqcQ.Rd |only dySEM-1.4.1/dySEM/man/scrapeVarCross.Rd | 32 dySEM-1.4.1/dySEM/man/scriptAPIM.Rd | 31 dySEM-1.4.1/dySEM/man/scriptBiDy.Rd | 12 dySEM-1.4.1/dySEM/man/scriptBifac.Rd |only dySEM-1.4.1/dySEM/man/scriptCFA.Rd | 151 dySEM-1.4.1/dySEM/man/scriptCFM.Rd | 12 dySEM-1.4.1/dySEM/man/scriptCor.Rd |only dySEM-1.4.1/dySEM/man/scriptDyEFA.Rd | 14 dySEM-1.4.1/dySEM/man/scriptHier.Rd |only dySEM-1.4.1/dySEM/man/scriptINULL.Rd | 12 dySEM-1.4.1/dySEM/man/scriptISAT.Rd | 12 dySEM-1.4.1/dySEM/man/scriptMIM.Rd | 14 dySEM-1.4.1/dySEM/man/scriptUni.Rd |only dySEM-1.4.1/dySEM/tests/testthat/test-getDyReliability.R | 2 dySEM-1.4.1/dySEM/tests/testthat/test-outHelpers.R |only dySEM-1.4.1/dySEM/tests/testthat/test-outputConstraintTab.R |only dySEM-1.4.1/dySEM/tests/testthat/test-outputInvarCompTab.R |only dySEM-1.4.1/dySEM/tests/testthat/test-outputModel-fileIO.R |only dySEM-1.4.1/dySEM/tests/testthat/test-outputParamFig.R |only dySEM-1.4.1/dySEM/tests/testthat/test-outputParamTab-fileIO.R |only dySEM-1.4.1/dySEM/tests/testthat/test-outputParamTab.R |only dySEM-1.4.1/dySEM/tests/testthat/test-outputUniConstructComp.R |only dySEM-1.4.1/dySEM/tests/testthat/test-scrapeVarCross.R | 607 +++ dySEM-1.4.1/dySEM/tests/testthat/test-scriptAPIM.R | 565 ++- dySEM-1.4.1/dySEM/tests/testthat/test-scriptBiDy.R | 292 + dySEM-1.4.1/dySEM/tests/testthat/test-scriptBifac.R |only dySEM-1.4.1/dySEM/tests/testthat/test-scriptCFA.R | 1541 ++++++-- dySEM-1.4.1/dySEM/tests/testthat/test-scriptCFM.R | 366 ++ dySEM-1.4.1/dySEM/tests/testthat/test-scriptCor.R |only dySEM-1.4.1/dySEM/tests/testthat/test-scriptHelpers.R | 1725 ++++++---- dySEM-1.4.1/dySEM/tests/testthat/test-scriptHier.R |only dySEM-1.4.1/dySEM/tests/testthat/test-scriptUni.R |only dySEM-1.4.1/dySEM/tests/testthat/test-semHelpers.R |only dySEM-1.4.1/dySEM/vignettes/dySEM.Rmd | 28 94 files changed, 7389 insertions(+), 2979 deletions(-)
More information about BootstrapTests at CRAN
Permanent link
Title: Collection of Correlation and Association Estimators
Description: Compute correlation and other association matrices from
small to high-dimensional datasets with relative simple functions and
sensible defaults. Includes options for shrinkage and robustness to improve
results in noisy or high-dimensional settings (p >= n), plus convenient
print/plot methods for inspection. Implemented with optimised C++ backends
using BLAS/OpenMP and memory-aware symmetric updates. Works with base
matrices and data frames, returning standard R objects via a consistent S3
interface. Useful across genomics, agriculture, and machine-learning
workflows. Supports Pearson, Spearman, Kendall, distance correlation,
partial correlation, and robust biweight mid-correlation; Bland–Altman
analyses and Lin's concordance correlation coefficient (including
repeated-measures extensions). Methods based on Ledoit and Wolf (2004)
<doi:10.1016/S0047-259X(03)00096-4>; Schäfer and Strimmer (2005)
<doi:10.2202/1544-6115.1175>; Lin (1989) <doi:10.2307/2532051>.
Author: Thiago de Paula Oliveira [aut, cre]
Maintainer: Thiago de Paula Oliveira <thiago.paula.oliveira@gmail.com>
Diff between matrixCorr versions 0.7.2 dated 2025-12-03 and 0.8.3 dated 2025-12-22
DESCRIPTION | 9 MD5 | 83 +- NAMESPACE | 6 R/biweight_mid_corr.R | 186 +++--- R/bland_altman.R | 128 ++-- R/bland_altman_repeated.R | 76 ++ R/ccc_repeated.R | 865 ++++++++++++++-------------- R/concordance_corr.R | 129 ++-- R/distance_corr.R | 65 +- R/kendall_corr.R | 140 ++-- R/partial_correlation.R | 132 ++-- R/pearson_corr.R | 51 - R/schafer_corr.R | 51 - R/spearman_rho.R | 28 R/validate_corr_input.R | 12 R/view_corr_shiny.R |only man/biweight_mid_corr.Rd | 12 man/ccc.Rd | 5 man/ccc_lmm_reml.Rd | 9 man/ccc_pairwise_u_stat.Rd | 5 man/distance_corr.Rd | 5 man/kendall_tau.Rd | 5 man/partial_correlation.Rd | 9 man/pearson_corr.Rd | 5 man/schafer_corr.Rd | 7 man/spearman_rho.Rd | 4 man/view_corr_shiny.Rd |only src/biweight_mid_corr.cpp | 198 ++++-- src/ccc_repeated.cpp | 4 src/concordance_corr.cpp | 25 src/distance_correlation.cpp | 57 - src/kendall_corr.cpp | 13 src/matrixCorr_detail.h | 9 src/partial_correlation.cpp | 28 tests/testthat/test_biweight_mid_corr.R | 35 - tests/testthat/test_bland_altman.R | 10 tests/testthat/test_bland_altman_repeated.R | 36 + tests/testthat/test_distance_corr.R | 20 tests/testthat/test_kendall.R | 45 - tests/testthat/test_partial_correlation.R |only tests/testthat/test_pearson_corr.R | 22 tests/testthat/test_schafer_corr.R |only tests/testthat/test_spearman_rho.R | 22 tests/testthat/test_view_corr_shiny.R |only tests/testthat/tests_partial_correlation.R | 2 45 files changed, 1539 insertions(+), 1014 deletions(-)
Title: Headers and Static Libraries for 'HDF5'
Description: 'HDF5' (Hierarchical Data Format 5) is a high-performance
library and file format for storing and managing large, complex
data. This package provides the static libraries and headers for
the 'HDF5' 'C' library (release 2.0.0). It is intended for R
package developers to use in the 'LinkingTo' field, which
eliminates the need for users to install system-level 'HDF5'
dependencies. This build is compiled with thread-safety enabled
and supports dynamic loading of external compression filters.
'HDF5' is developed by 'The HDF Group' <https://www.hdfgroup.org/>.
Author: Daniel P. Smith [aut, cre] ,
The HDF Group [cph] ,
Jean-loup Mark [cph] ,
Gailly Adler [cph]
Maintainer: Daniel P. Smith <dansmith01@gmail.com>
Diff between hdf5lib versions 2.0.0.3 dated 2025-12-14 and 2.0.0.4 dated 2025-12-22
DESCRIPTION | 6 +++--- MD5 | 8 ++++---- NEWS.md | 6 ++++++ configure | 7 +++++-- src/zlib-1.3.1.tar.gz |binary 5 files changed, 18 insertions(+), 9 deletions(-)
Title: Truncated Functional Generalized Linear Models
Description: An implementation of the methodologies described in Xi Liu, Afshin A. Divani, and Alexander Petersen (2022) <doi:10.1016/j.csda.2022.107421>, including
truncated functional linear and truncated functional logistic regression models.
Author: Xi Liu [aut],
Chau Tran [aut, cre],
Alexander Petersen [aut]
Maintainer: Chau Tran <cbtr@ucdavis.edu>
Diff between FGLMtrunc versions 0.1.0 dated 2022-05-26 and 0.2.0 dated 2025-12-22
DESCRIPTION | 12 - MD5 | 12 - build/vignette.rds |binary inst/doc/FGLMtrunc.R | 34 ++--- inst/doc/FGLMtrunc.html | 294 ++++++++++++++++++++++++------------------------ src/Makevars | 1 src/Makevars.win | 1 7 files changed, 180 insertions(+), 174 deletions(-)
More information about TemporalForest at CRAN
Permanent link
Title: Regularization in Cox Frailty Models
Description: Different regularization approaches for Cox Frailty Models by penalization methods are provided.
see Groll et al. (2017) <doi:10.1111/biom.12637> for effects selection.
See also Groll and Hohberg (2024) <doi:10.1002/bimj.202300020> for classical LASSO approach.
Author: Andreas Groll [aut, cre]
Maintainer: Andreas Groll <groll@statistik.tu-dortmund.de>
Diff between PenCoxFrail versions 2.0.0 dated 2024-07-04 and 2.0.1 dated 2025-12-22
DESCRIPTION | 21 +++++++++++++-------- MD5 | 16 ++++++++-------- demo/pencoxfrail-pbc.r | 4 ++-- man/coxFL.Rd | 4 ++-- man/coxlasso.rd | 4 ++-- man/coxridge.rd | 4 ++-- man/pencoxfrail.rd | 15 ++++++++------- src/IntegrMulti.cpp | 1 - src/Makevars.win | 1 - 9 files changed, 37 insertions(+), 33 deletions(-)
Title: Broken Adaptive Ridge Regression with Cyclops
Description: Approximates best-subset selection (L0) regression with
an iteratively adaptive Ridge (L2) penalty for large-scale models.
This package uses Cyclops for an efficient implementation and the
iterative method is described in Kawaguchi et al (2020)
<doi:10.1002/sim.8438> and Li et al (2021)
<doi:10.1016/j.jspi.2020.12.001>.
Author: Marc A. Suchard [aut, cre],
Eric Kawaguchi [aut],
Ning Li [aut],
Gang Li [aut],
Observational Health Data Sciences and Informatics [cph]
Maintainer: Marc A. Suchard <msuchard@ucla.edu>
Diff between BrokenAdaptiveRidge versions 1.0.1 dated 2025-07-23 and 1.0.2 dated 2025-12-22
DESCRIPTION | 10 +++++----- MD5 | 8 ++++---- NEWS.md | 8 +++++++- R/Prior.R | 13 ++++++++----- R/fastBarPrior.R | 13 ++++++++----- 5 files changed, 32 insertions(+), 20 deletions(-)
More information about BrokenAdaptiveRidge at CRAN
Permanent link
Title: Tandem Repeat Analysis by Capillary Electrophoresis
Description: A pipeline for short tandem repeat instability analysis from fragment analysis data. Inputs of fsa files or peak tables, and a user supplied metadata data-frame. The package identifies ladders, calls peaks, identifies the modal peaks, calls repeats, then calculates repeat instability metrics (e.g. expansion index from Lee et al. (2010) <doi:10.1186/1752-0509-4-29>).
Author: Zachariah McLean [aut, cre, cph] ,
Kevin Correia [aut],
Andrew Jiang [ctb]
Maintainer: Zachariah McLean <zachariah.louis.mclean@gmail.com>
Diff between trace versions 0.6.0 dated 2025-03-14 and 1.0.0 dated 2025-12-22
trace-0.6.0/trace/R/read_fsa.R |only trace-0.6.0/trace/inst/extdata/_extensions |only trace-0.6.0/trace/man/fragments_repeats.Rd |only trace-0.6.0/trace/man/fragments_trace.Rd |only trace-0.6.0/trace/man/generate_trace_template.Rd |only trace-0.6.0/trace/man/peak_table_to_fragments.Rd |only trace-0.6.0/trace/man/repeat_table_to_repeats.Rd |only trace-0.6.0/trace/tests/testthat/test-classes.R |only trace-0.6.0/trace/tests/testthat/test-tidiers.R |only trace-1.0.0/trace/DESCRIPTION | 19 trace-1.0.0/trace/MD5 | 150 - trace-1.0.0/trace/NAMESPACE | 17 trace-1.0.0/trace/NEWS.md | 64 trace-1.0.0/trace/R/add_metadata.R | 161 - trace-1.0.0/trace/R/assign_index_peaks.R | 162 + trace-1.0.0/trace/R/calculate_instability_metrics.R | 937 +++++----- trace-1.0.0/trace/R/call_repeats.R | 386 ++-- trace-1.0.0/trace/R/classes.R | 234 +- trace-1.0.0/trace/R/config.R |only trace-1.0.0/trace/R/constructors.R | 305 +-- trace-1.0.0/trace/R/extract_functions.R | 115 - trace-1.0.0/trace/R/find_alleles.R | 95 - trace-1.0.0/trace/R/find_fragments.R | 140 - trace-1.0.0/trace/R/find_ladders.R | 716 +++++-- trace-1.0.0/trace/R/fix_ladders_shiny_app.R | 39 trace-1.0.0/trace/R/main.R |only trace-1.0.0/trace/R/misc.R | 115 - trace-1.0.0/trace/R/plotting.R | 134 - trace-1.0.0/trace/README.md | 236 -- trace-1.0.0/trace/build/partial.rdb |binary trace-1.0.0/trace/build/vignette.rds |binary trace-1.0.0/trace/data/cell_line_fsa_list.rda |binary trace-1.0.0/trace/data/example_data_repeat_table.rda |binary trace-1.0.0/trace/inst/doc/plotting_traces.R | 46 trace-1.0.0/trace/inst/doc/plotting_traces.Rmd | 51 trace-1.0.0/trace/inst/doc/plotting_traces.html | 172 - trace-1.0.0/trace/inst/extdata/trace_config.yaml |only trace-1.0.0/trace/man/add_metadata.Rd | 55 trace-1.0.0/trace/man/assign_index_peaks.Rd | 61 trace-1.0.0/trace/man/calculate_instability_metrics.Rd | 71 trace-1.0.0/trace/man/call_repeats.Rd | 86 trace-1.0.0/trace/man/extract_alleles.Rd | 18 trace-1.0.0/trace/man/extract_fragments.Rd | 30 trace-1.0.0/trace/man/extract_ladder_summary.Rd | 12 trace-1.0.0/trace/man/extract_repeat_correction_summary.Rd | 33 trace-1.0.0/trace/man/extract_trace_table.Rd | 12 trace-1.0.0/trace/man/figures/README-ggplot-1.png |binary trace-1.0.0/trace/man/figures/README-plot_fragments-1.png |binary trace-1.0.0/trace/man/figures/README-plot_ladders-1.png |binary trace-1.0.0/trace/man/figures/README-plot_traces-1.png |binary trace-1.0.0/trace/man/figures/README-unnamed-chunk-2-1.png |binary trace-1.0.0/trace/man/find_alleles.Rd | 36 trace-1.0.0/trace/man/find_fragments.Rd | 50 trace-1.0.0/trace/man/find_ladders.Rd | 78 trace-1.0.0/trace/man/fix_ladders_interactive.Rd | 17 trace-1.0.0/trace/man/fix_ladders_manual.Rd | 18 trace-1.0.0/trace/man/fragments.Rd | 155 + trace-1.0.0/trace/man/genemapper_table_to_fragments.Rd |only trace-1.0.0/trace/man/load_config.Rd |only trace-1.0.0/trace/man/plot_batch_correction_samples.Rd | 24 trace-1.0.0/trace/man/plot_data_channels.Rd | 2 trace-1.0.0/trace/man/plot_fragments.Rd | 16 trace-1.0.0/trace/man/plot_ladders.Rd | 12 trace-1.0.0/trace/man/plot_repeat_correction_model.Rd | 26 trace-1.0.0/trace/man/plot_traces.Rd | 21 trace-1.0.0/trace/man/read_fsa.Rd | 8 trace-1.0.0/trace/man/remove_fragments.Rd | 6 trace-1.0.0/trace/man/repeat_table_to_fragments.Rd |only trace-1.0.0/trace/man/size_table_to_fragments.Rd |only trace-1.0.0/trace/man/trace-package.Rd | 1 trace-1.0.0/trace/man/trace.Rd |only trace-1.0.0/trace/tests/testthat/fixtures |only trace-1.0.0/trace/tests/testthat/test-add_metadata.R | 124 - trace-1.0.0/trace/tests/testthat/test-assign_index_peaks.R | 58 trace-1.0.0/trace/tests/testthat/test-calculate_instability_metrics.R | 143 + trace-1.0.0/trace/tests/testthat/test-call_repeats.R | 163 + trace-1.0.0/trace/tests/testthat/test-constructors.R | 23 trace-1.0.0/trace/tests/testthat/test-extract_functions.R | 3 trace-1.0.0/trace/tests/testthat/test-find_alleles.R | 39 trace-1.0.0/trace/tests/testthat/test-find_fragments.R | 15 trace-1.0.0/trace/tests/testthat/test-find_ladders.R | 109 - trace-1.0.0/trace/tests/testthat/test-full-pipeline.R | 24 trace-1.0.0/trace/tests/testthat/test-main.R |only trace-1.0.0/trace/tests/testthat/test-shinytest2.R | 143 - trace-1.0.0/trace/tests/testthat/test-trace_output.R |only trace-1.0.0/trace/vignettes/plotting_traces.Rmd | 51 86 files changed, 3057 insertions(+), 2980 deletions(-)
Title: Prediction Explanation with Dependence-Aware Shapley Values
Description: Complex machine learning models are often hard to interpret. However, in
many situations it is crucial to understand and explain why a model made a specific
prediction. Shapley values is the only method for such prediction explanation framework
with a solid theoretical foundation. Previously known methods for estimating the Shapley
values do, however, assume feature independence. This package implements methods which accounts for any feature
dependence, and thereby produces more accurate estimates of the true Shapley values.
An accompanying 'Python' wrapper ('shaprpy') is available through PyPI.
Author: Martin Jullum [cre, aut] ,
Lars Henry Berge Olsen [aut] ,
Annabelle Redelmeier [aut],
Jon Lachmann [aut] ,
Nikolai Sellereite [aut] ,
Anders Loeland [ctb],
Jens Christian Wahl [ctb],
Camilla Lingjaerde [ctb],
Norsk Regnesentral [cph, fnd]
Maintainer: Martin Jullum <Martin.Jullum@nr.no>
This is a re-admission after prior archival of version 1.0.6 dated 2025-11-17
Diff between shapr versions 1.0.6 dated 2025-11-17 and 1.0.7 dated 2025-12-22
DESCRIPTION | 20 LICENSE | 4 MD5 | 622 NAMESPACE | 276 NEWS.md | 554 R/RcppExports.R | 590 R/approach.R | 262 R/approach_categorical.R | 506 R/approach_copula.R | 346 R/approach_ctree.R | 610 R/approach_empirical.R | 1222 - R/approach_gaussian.R | 346 R/approach_independence.R | 256 R/approach_regression_separate.R | 1022 R/approach_regression_surrogate.R | 487 R/approach_timeseries.R | 296 R/approach_vaeac.R | 5843 ++-- R/approach_vaeac_torch_modules.R | 4098 +-- R/asymmetric_and_causal_Shapley.R | 1039 R/check_convergence.R | 180 R/cli.R | 840 R/compute_estimates.R | 723 R/compute_vS.R | 611 R/documentation.R | 172 R/explain.R | 1312 - R/explain_forecast.R | 922 R/finalize_explanation.R | 453 R/get_feature_specs.R | 144 R/get_predict_model.R | 176 R/get_results.R | 258 R/model.R | 348 R/model_ar.R | 69 R/model_arima.R | 184 R/model_glm.R | 70 R/model_lm.R | 64 R/model_mgcv_gam.R | 82 R/model_ranger.R | 172 R/model_workflow.R | 64 R/model_xgboost.R | 172 R/plot.R | 4041 +-- R/prepare_next_iteration.R | 194 R/print.R | 52 R/save_results.R | 50 R/setup.R | 3701 +-- R/shapley_setup.R | 1658 - R/shapr-package.R | 66 R/summary.R | 274 R/testthat-helpers.R | 56 R/timing.R | 162 R/utils.R | 22 R/zzz.R | 346 README.md | 736 build/vignette.rds |binary inst/CITATION | 52 inst/REFERENCES.bib | 482 inst/doc/asymmetric_causal.Rmd | 4682 +-- inst/doc/asymmetric_causal.html | 5384 ++-- inst/doc/general_usage.Rmd | 5948 ++--- inst/doc/general_usage.html | 6932 ++--- inst/doc/regression.Rmd |11421 ++++++--- inst/doc/regression.html |11839 ++++++---- inst/doc/vaeac.Rmd | 2726 +- inst/doc/vaeac.html | 3418 +- man/additional_regression_setup.Rd | 38 man/aicc_full_cpp.Rd | 72 man/aicc_full_single_cpp.Rd | 64 man/append_vS_list.Rd | 44 man/categorical_to_one_hot_layer.Rd | 66 man/check_categorical_valid_MCsamp.Rd | 60 man/check_convergence.Rd | 38 man/check_groups.Rd | 24 man/check_verbose.Rd | 66 man/cli_compute_vS.Rd | 38 man/cli_iter.Rd | 72 man/cli_startup.Rd | 66 man/cli_topline.Rd | 96 man/coalition_matrix_cpp.Rd | 50 man/compute_MSEv_eval_crit.Rd | 168 man/compute_estimates.Rd | 44 man/compute_shapley.Rd | 46 man/compute_time.Rd | 38 man/compute_vS.Rd | 38 man/convert_feature_name_to_idx.Rd | 76 man/correction_matrix_cpp.Rd | 50 man/create_coalition_table.Rd | 194 man/create_ctree.Rd | 82 man/create_marginal_data_cat.Rd | 122 man/create_marginal_data_gaussian.Rd | 50 man/create_marginal_data_training.Rd | 74 man/default_doc_export.Rd | 52 man/default_doc_internal.Rd | 142 man/exact_coalition_table.Rd | 56 man/explain.Rd | 1241 - man/explain_forecast.Rd | 768 man/figures/README-basic_example-1.png |binary man/finalize_explanation.Rd | 38 man/format_convergence_info.Rd | 42 man/format_info_basic.Rd | 36 man/format_info_extra.Rd | 36 man/format_round.Rd | 44 man/format_shapley_info.Rd | 50 man/gauss_cat_loss.Rd | 60 man/gauss_cat_parameters.Rd | 64 man/gauss_cat_sampler_most_likely.Rd | 66 man/gauss_cat_sampler_random.Rd | 60 man/gaussian_transform.Rd | 42 man/gaussian_transform_separate.Rd | 48 man/get_S_causal_steps.Rd | 114 man/get_cov_mat.Rd | 42 man/get_data_forecast.Rd | 116 man/get_data_specs.Rd | 66 man/get_extra_comp_args_default.Rd | 168 man/get_extra_parameters.Rd | 24 man/get_feature_specs.Rd | 66 man/get_iterative_args_default.Rd | 106 man/get_max_n_coalitions_causal.Rd | 84 man/get_model_specs.Rd | 169 man/get_mu_vec.Rd | 34 man/get_nice_time.Rd | 36 man/get_output_args_default.Rd | 72 man/get_predict_model.Rd | 42 man/get_results.Rd | 172 man/get_supported_approaches.Rd | 30 man/get_supported_models.Rd | 28 man/get_valid_causal_coalitions.Rd | 82 man/group_forecast_setup.Rd | 48 man/hat_matrix_cpp.Rd | 58 man/inv_gaussian_transform_cpp.Rd | 50 man/lag_data.Rd | 48 man/mahalanobis_distance_cpp.Rd | 82 man/mcar_mask_generator.Rd | 76 man/memory_layer.Rd | 70 man/model_checker.Rd | 113 man/num_str.Rd | 38 man/observation_impute.Rd | 76 man/observation_impute_cpp.Rd | 98 man/paired_sampler.Rd | 54 man/plot.shapr.Rd | 465 man/plot_MSEv_eval_crit.Rd | 427 man/plot_SV_several_approaches.Rd | 473 man/plot_vaeac_eval_crit.Rd | 330 man/plot_vaeac_imputed_ggpairs.Rd | 286 man/predict_model.Rd | 263 man/prepare_data.Rd | 136 man/prepare_data_causal.Rd | 76 man/prepare_data_copula_cpp.Rd | 112 man/prepare_data_copula_cpp_caus.Rd | 112 man/prepare_data_gaussian_cpp.Rd | 76 man/prepare_data_gaussian_cpp_caus.Rd | 76 man/prepare_data_single_coalition.Rd | 44 man/prepare_next_iteration.Rd | 38 man/print.shapr.Rd | 70 man/print.summary.shapr.Rd |only man/print_iter.Rd | 38 man/process_factor_data.Rd | 44 man/quantile_type7_cpp.Rd | 56 man/reg_forecast_setup.Rd | 54 man/regression.check_namespaces.Rd | 32 man/regression.check_parameters.Rd | 50 man/regression.check_recipe_func.Rd | 56 man/regression.check_sur_n_comb.Rd | 54 man/regression.check_vfold_cv_para.Rd | 40 man/regression.cv_message.Rd | 58 man/regression.get_string_to_R.Rd | 36 man/regression.get_tune.Rd | 82 man/regression.get_y_hat.Rd | 66 man/regression.surrogate_aug_data.Rd | 124 man/regression.train_model.Rd | 188 man/release_questions.Rd | 30 man/round_manual.Rd | 44 man/rss_cpp.Rd | 50 man/sample_coalition_table.Rd | 158 man/sample_coalitions_cpp_str_paired.Rd | 48 man/sample_combinations.Rd | 66 man/sample_ctree.Rd | 74 man/save_results.Rd | 38 man/setup.Rd | 494 man/setup_approach.Rd | 586 man/shapley_setup.Rd | 38 man/shapley_weights.Rd | 62 man/shapr-package.Rd | 80 man/skip_connection.Rd | 40 man/specified_masks_mask_generator.Rd | 56 man/specified_prob_mask_generator.Rd | 68 man/summary.shapr.Rd | 95 man/test_predict_model.Rd | 52 man/testing_cleanup.Rd | 36 man/vaeac.Rd | 344 man/vaeac_categorical_parse_params.Rd | 86 man/vaeac_check_activation_func.Rd | 44 man/vaeac_check_cuda.Rd | 76 man/vaeac_check_epoch_values.Rd | 108 man/vaeac_check_extra_named_list.Rd | 36 man/vaeac_check_logicals.Rd | 42 man/vaeac_check_mask_gen.Rd | 62 man/vaeac_check_masking_ratio.Rd | 52 man/vaeac_check_parameters.Rd | 388 man/vaeac_check_positive_integers.Rd | 42 man/vaeac_check_positive_numerics.Rd | 42 man/vaeac_check_probabilities.Rd | 42 man/vaeac_check_save_names.Rd | 56 man/vaeac_check_save_parameters.Rd | 100 man/vaeac_check_which_vaeac_model.Rd | 72 man/vaeac_check_x_colnames.Rd | 46 man/vaeac_compute_normalization.Rd | 52 man/vaeac_dataset.Rd | 62 man/vaeac_extend_batch.Rd | 56 man/vaeac_get_current_save_state.Rd | 48 man/vaeac_get_data_objects.Rd | 172 man/vaeac_get_evaluation_criteria.Rd | 50 man/vaeac_get_extra_para_default.Rd | 368 man/vaeac_get_full_state_list.Rd | 66 man/vaeac_get_mask_generator_name.Rd | 106 man/vaeac_get_model_from_checkp.Rd | 60 man/vaeac_get_n_decimals.Rd | 46 man/vaeac_get_optimizer.Rd | 50 man/vaeac_get_save_file_names.Rd | 112 man/vaeac_get_val_iwae.Rd | 84 man/vaeac_get_x_explain_extended.Rd | 54 man/vaeac_impute_missing_entries.Rd | 140 man/vaeac_kl_normal_normal.Rd | 48 man/vaeac_normal_parse_params.Rd | 72 man/vaeac_normalize_data.Rd | 64 man/vaeac_postprocess_data.Rd | 52 man/vaeac_preprocess_data.Rd | 82 man/vaeac_print_train_summary.Rd | 52 man/vaeac_save_state.Rd | 50 man/vaeac_train_model.Rd | 428 man/vaeac_train_model_auxiliary.Rd | 228 man/vaeac_train_model_continue.Rd | 126 man/vaeac_update_para_locations.Rd | 44 man/vaeac_update_pretrained_model.Rd | 42 man/weight_matrix.Rd | 52 man/weight_matrix_cpp.Rd | 64 tests/testthat.R | 14 tests/testthat/helper-ar-arima.R | 52 tests/testthat/helper-lm.R | 94 tests/testthat/helper-model-classes.R |only tests/testthat/helper-ts.R | 80 tests/testthat/test-asymmetric-causal-output.R | 1115 tests/testthat/test-asymmetric-causal-setup.R | 783 tests/testthat/test-classes.R |only tests/testthat/test-forecast-output.R | 408 tests/testthat/test-forecast-setup.R | 1480 - tests/testthat/test-iterative-output.R | 400 tests/testthat/test-iterative-setup.R | 902 tests/testthat/test-model-classes.R |only tests/testthat/test-plot.R | 624 tests/testthat/test-regression-output.R | 646 tests/testthat/test-regression-setup.R | 746 tests/testthat/test-regular-output.R | 1213 - tests/testthat/test-regular-setup.R | 3798 +-- tests/testthat/test-semi-deterministic-output.R | 142 tests/testthat/test-semi-deterministic-setup.R | 254 tests/testthat/test-summary.R | 92 vignettes/asymmetric_causal.Rmd | 4682 +-- vignettes/figure_asymmetric_causal/compare_plots-1.webp |binary vignettes/figure_asymmetric_causal/explanation_asym_cau_SV-1.webp |binary vignettes/figure_asymmetric_causal/explanation_asym_cau_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/explanation_asym_con_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/explanation_sym_cau_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/explanation_sym_con_SV-1.webp |binary vignettes/figure_asymmetric_causal/explanation_sym_con_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/explanation_sym_mar_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/group_gaussian_plot_SV-1.webp |binary vignettes/figure_asymmetric_causal/group_gaussian_plot_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/n_coalitions_plot_SV-1.webp |binary vignettes/figure_asymmetric_causal/n_coalitions_plot_beeswarm-1.webp |binary vignettes/figure_asymmetric_causal/scatter_plots-1.webp |binary vignettes/figure_asymmetric_causal/setup_3-1.webp |binary vignettes/figure_asymmetric_causal/sym_and_asym_Shapley_values-1.webp |binary vignettes/figure_asymmetric_causal/two_dates_1-1.webp |binary vignettes/figure_asymmetric_causal/two_dates_2-1.webp |binary vignettes/figure_asymmetric_causal/two_dates_3-1.webp |binary vignettes/figure_general_usage/MSEv-plot-2-1.webp |binary vignettes/figure_general_usage/MSEv-plot-2-2.webp |binary vignettes/figure_general_usage/MSEv-plot-3-1.webp |binary vignettes/figure_general_usage/MSEv-plot-4-1.webp |binary vignettes/figure_general_usage/combined-1-1.webp |binary vignettes/figure_general_usage/group-1.webp |binary vignettes/figure_general_usage/plot-beeswarm-1.webp |binary vignettes/figure_general_usage/plot-scatter-1.webp |binary vignettes/figure_general_usage/plot-waterfall-1.webp |binary vignettes/figure_general_usage/setup-2-1.webp |binary vignettes/figure_general_usage/vaeac-plot-3-1.webp |binary vignettes/figure_regression/MSEv-sum-1.webp |binary vignettes/figure_regression/MSEv-sum-2-1.webp |binary vignettes/figure_regression/SV-sum-1.webp |binary vignettes/figure_regression/SV-sum-2-1.webp |binary vignettes/figure_regression/SV-sum-2.webp |binary vignettes/figure_regression/SV-sum-3.webp |binary vignettes/figure_regression/decision-tree-plot-1.webp |binary vignettes/figure_regression/dt-cv-plot-1.webp |binary vignettes/figure_regression/lm-emp-msev-1.webp |binary vignettes/figure_regression/mixed-plot-1.webp |binary vignettes/figure_regression/mixed-plot-2-1.webp |binary vignettes/figure_regression/mixed-plot-3-1.webp |binary vignettes/figure_regression/mixed-plot-4-1.webp |binary vignettes/figure_regression/ppr-plot-1.webp |binary vignettes/figure_regression/preproc-plot-1.webp |binary vignettes/figure_regression/surrogate-plot-1.webp |binary vignettes/figure_vaeac/check-n_coalitions-1.webp |binary vignettes/figure_vaeac/continue-training-2-1.webp |binary vignettes/figure_vaeac/continue-training-2-2.webp |binary vignettes/figure_vaeac/continue-training-2.webp |binary vignettes/figure_vaeac/continue-training-5.webp |binary vignettes/figure_vaeac/early-stopping-3-1.webp |binary vignettes/figure_vaeac/early-stopping-3-2.webp |binary vignettes/figure_vaeac/first-vaeac-plots-1.webp |binary vignettes/figure_vaeac/paired-sampling-plotting-2.webp |binary vignettes/figure_vaeac/vaeac-grouping-of-features-1.webp |binary vignettes/general_usage.Rmd | 5948 ++--- vignettes/regression.Rmd |11421 ++++++--- vignettes/vaeac.Rmd | 2726 +- 314 files changed, 79357 insertions(+), 65448 deletions(-)
Title: Simulation and Inference for Stochastic Differential Equations
Description: Description: Provides functions for simulation and inference for stochastic differential equations (SDEs). It accompanies the book "Simulation and Inference for Stochastic Differential Equations: With R Examples" (Iacus, 2008, Springer; ISBN: 978-0-387-75838-1).
Author: Stefano Maria Iacus [aut, cre]
Maintainer: Stefano Maria Iacus <smiacus@gmail.com>
Diff between sde versions 2.0.18 dated 2022-08-09 and 2.0.21 dated 2025-12-22
DESCRIPTION | 18 +++++++------ MD5 | 10 +++---- build/partial.rdb |binary build/vignette.rds |binary inst/doc/sde.errata.pdf |binary src/sde.sim.c | 64 +++++++++++++++++++----------------------------- 6 files changed, 41 insertions(+), 51 deletions(-)
Title: An Imputation Approach to Estimating Path-Specific Causal
Effects
Description: In causal mediation analysis with multiple causally ordered mediators, a set of path-specific
effects are identified under standard ignorability assumptions. This package implements an imputation
approach to estimating these effects along with a set of bias formulas for conducting sensitivity analysis
(Zhou and Yamamoto <doi:10.31235/osf.io/2rx6p>). It contains two main functions: paths() for estimating
path-specific effects and sens() for conducting sensitivity analysis. Estimation uncertainty is quantified
using the nonparametric bootstrap.
Author: Minh Trinh [aut],
Teppei Yamamoto [aut],
Xiang Zhou [cre]
Maintainer: Xiang Zhou <xiang_zhou@fas.harvard.edu>
Diff between paths versions 0.1.1 dated 2021-06-18 and 0.1.2 dated 2025-12-22
paths-0.1.1/paths/ChangeLog |only paths-0.1.2/paths/DESCRIPTION | 28 - paths-0.1.2/paths/MD5 | 35 -- paths-0.1.2/paths/NEWS.md | 24 - paths-0.1.2/paths/R/paths-package.R | 13 paths-0.1.2/paths/R/paths_fit.R | 4 paths-0.1.2/paths/R/plot.sens.R | 2 paths-0.1.2/paths/R/sens.R | 2 paths-0.1.2/paths/README.md | 5 paths-0.1.2/paths/inst/examples/sens.paths-example.R | 2 paths-0.1.2/paths/man/paths-package.Rd | 45 +- paths-0.1.2/paths/man/paths.Rd | 324 +++++++++---------- paths-0.1.2/paths/man/plot.paths.Rd | 174 +++++----- paths-0.1.2/paths/man/plot.sens.Rd | 166 ++++----- paths-0.1.2/paths/man/pred.Rd | 80 ++-- paths-0.1.2/paths/man/sens.Rd | 212 ++++++------ paths-0.1.2/paths/man/summary.paths.Rd | 184 +++++----- paths-0.1.2/paths/man/tatar.Rd | 122 +++---- paths-0.1.2/paths/man/welfare.Rd | 122 +++---- 19 files changed, 775 insertions(+), 769 deletions(-)
Title: Enrichment Analysis Utilizing Active Subnetworks
Description: Enrichment analysis enables researchers to uncover mechanisms
underlying a phenotype. However, conventional methods for enrichment
analysis do not take into account protein-protein interaction information,
resulting in incomplete conclusions. 'pathfindR' is a tool for enrichment
analysis utilizing active subnetworks. The main function identifies active
subnetworks in a protein-protein interaction network using a user-provided
list of genes and associated p values. It then performs enrichment analyses
on the identified subnetworks, identifying enriched terms (i.e. pathways or,
more broadly, gene sets) that possibly underlie the phenotype of interest.
'pathfindR' also offers functionalities to cluster the enriched terms and
identify representative terms in each cluster, to score the enriched terms
per sample and to visualize analysis results. The enrichment, clustering and
other methods implemented in 'pathfindR' are described in detail in
Ulgen E, Ozisik O, Sezerman OU. 2019. 'pathfindR [...truncated...]
Author: Ege Ulgen [cre, cph] ,
Ozan Ozisik [aut]
Maintainer: Ege Ulgen <egeulgen@gmail.com>
Diff between pathfindR versions 2.6.0 dated 2025-09-20 and 2.7.0 dated 2025-12-22
DESCRIPTION | 16 ++++++++-------- MD5 | 24 ++++++++++++------------ NEWS.md | 4 ++++ R/utility.R | 12 ++++++++++++ R/visualization.R | 11 +++++++++++ build/vignette.rds |binary inst/doc/comparing_results.html | 9 +++++---- inst/doc/intro_vignette.html | 11 ++++++----- inst/doc/manual_execution.html | 9 +++++---- inst/doc/non_hs_analysis.html | 11 ++++++----- inst/doc/obtain_data.html | 9 +++++---- inst/doc/visualization_vignette.html | 17 +++++++++-------- tests/testthat/test-visualization.R | 4 +++- 13 files changed, 86 insertions(+), 51 deletions(-)
Title: Localization Microscopy Data Analysis
Description: Read, register and compare point sets from single molecule localization microscopy.
Author: Jean-Karim Heriche [cre, aut]
Maintainer: Jean-Karim Heriche <heriche@embl.de>
Diff between LOMAR versions 0.5.0 dated 2024-09-26 and 0.5.1 dated 2025-12-22
DESCRIPTION | 15 ++++----- MD5 | 24 +++++++------- NEWS.md | 9 ++++- R/TDA.R | 10 +++--- R/alpha_shape.R | 4 +- R/registration.R | 71 ++++++++++++++++++++++++++++---------------- R/utils.R | 70 ++++++++++++++++++++++--------------------- man/cpd.Rd | 8 +++- man/icp.Rd | 8 +++- man/shape_features_3d.Rd | 1 man/wgmmreg.Rd | 3 + src/diag.cpp | 6 --- tests/testthat/test-utils.R | 2 - 13 files changed, 136 insertions(+), 95 deletions(-)
Title: Plotting Tool for Brain Atlases
Description: Contains 'ggplot2' geom for plotting brain atlases using
simple features. The largest component of the package is the data
for the two built-in atlases. Mowinckel & Vidal-Piñeiro (2020)
<doi:10.1177/2515245920928009>.
Author: Athanasia Mo Mowinckel [aut, cre] ,
Didac Vidal-Pineiro [aut] ,
Ramiro Magno [aut]
Maintainer: Athanasia Mo Mowinckel <a.m.mowinckel@psykologi.uio.no>
Diff between ggseg versions 1.6.7 dated 2025-11-14 and 1.6.8 dated 2025-12-22
DESCRIPTION | 10 - MD5 | 72 ++++---- NEWS.md | 2 R/brain_atlas.R | 108 +++++++------ R/brain_join.R | 48 ++--- R/brain_palettes.R | 79 +++++---- R/coord-funcs.R | 97 ++++++----- R/geom-brain.R | 183 ++++++++++++---------- R/ggseg-adapt_scales.R | 104 ++++++------ R/ggseg.R | 69 ++++---- R/layer-brain.R | 232 ++++++++++++++++------------ R/read_freesurfer.R | 46 ++--- R/scale-brain.R | 66 +++++-- README.md | 22 +- inst/doc/externalData.R | 105 ++++++------ inst/doc/externalData.Rmd | 105 ++++++------ inst/doc/externalData.html | 116 +++++++------- inst/doc/freesurfer_files.R | 16 - inst/doc/freesurfer_files.Rmd | 16 - inst/doc/freesurfer_files.html | 18 +- inst/doc/ggseg.R | 100 +++++++----- inst/doc/ggseg.Rmd | 96 +++++++---- inst/doc/ggseg.html | 180 ++++++++++++--------- man/figures/README-unnamed-chunk-5-1.png |binary tests/testthat/test-brain_atlas.R | 73 +++----- tests/testthat/test-brain_join.R | 18 +- tests/testthat/test-brain_palettes.R | 12 - tests/testthat/test-coord-funcs.R | 1 tests/testthat/test-ggseg-adapt_scales.R | 3 tests/testthat/test-ggseg_atlas.R | 92 +++++------ tests/testthat/test-position-brain.R | 16 + tests/testthat/test-read_freesurfer_stats.R | 120 +++++++++++--- tests/testthat/test-scale_brain.R | 55 +++--- tests/testthat/test-theme_brain.R | 21 -- vignettes/externalData.Rmd | 105 ++++++------ vignettes/freesurfer_files.Rmd | 16 - vignettes/ggseg.Rmd | 96 +++++++---- 37 files changed, 1405 insertions(+), 1113 deletions(-)
Title: Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids
and Affinity Propagation Clustering
Description: Gaussian mixture models, k-means, mini-batch-kmeans, k-medoids and affinity propagation clustering with the option to plot, validate, predict (new data) and estimate the optimal number of clusters. The package takes advantage of 'RcppArmadillo' to speed up the computationally intensive parts of the functions. For more information, see (i) "Clustering in an Object-Oriented Environment" by Anja Struyf, Mia Hubert, Peter Rousseeuw (1997), Journal of Statistical Software, <doi:10.18637/jss.v001.i04>; (ii) "Web-scale k-means clustering" by D. Sculley (2010), ACM Digital Library, <doi:10.1145/1772690.1772862>; (iii) "Armadillo: a template-based C++ library for linear algebra" by Sanderson et al (2016), The Journal of Open Source Software, <doi:10.21105/joss.00026>; (iv) "Clustering by Passing Messages Between Data Points" by Brendan J. Frey and Delbert Dueck, Science 16 Feb 2007: Vol. 315, Issue 5814, pp. 972-976, <doi:10.1126/science.1136800>.
Author: Lampros Mouselimis [aut, cre] ,
Conrad Sanderson [cph] ,
Ryan Curtin [cph] ,
Siddharth Agrawal [cph] ),
Brendan Frey [cph] ),
Delbert Dueck [cph] ,
Vitalie Spinu [ctb] ,
Frederiek - Maarten Kerckhof [ctb]
Maintainer: Lampros Mouselimis <mouselimislampros@gmail.com>
Diff between ClusterR versions 1.3.5 dated 2025-10-18 and 1.3.6 dated 2025-12-22
DESCRIPTION | 10 ++--- MD5 | 28 +++++++------- NEWS.md | 6 +++ R/RcppExports.R | 4 +- R/clustering_functions.R | 13 ++++-- README.md | 2 - inst/doc/the_clusterR_package.html | 18 ++++----- inst/include/ClusterRHeader.h | 21 ++++++++-- inst/include/affinity_propagation.h | 23 ++++++------ man/Optimal_Clusters_GMM.Rd | 7 +++ man/tryCatch_optimal_clust_GMM.Rd | 3 + src/RcppExports.cpp | 7 ++- src/export_inst_folder_headers.cpp | 4 +- src/init.c | 44 +++++++++++----------- tests/testthat/test-gmm.R | 69 ++++++++++++++++++++++++++++++++++++ 15 files changed, 180 insertions(+), 79 deletions(-)
Title: Interact with Data on 'SurveyCTO'
Description: 'SurveyCTO' is a platform for mobile data collection in offline settings.
The 'rsurveycto' R package uses the 'SurveyCTO' REST API
<https://docs.surveycto.com/05-exporting-and-publishing-data/05-api-access/01.api-access.html>
to read datasets and forms from a 'SurveyCTO' server into R as 'data.table's
and to download file attachments. The package also has limited support to
write datasets to a server.
Author: Jake Hughey [aut, cre],
Robert On [aut]
Maintainer: Jake Hughey <jake@agency.fund>
Diff between rsurveycto versions 0.2.2 dated 2025-06-18 and 0.2.4 dated 2025-12-22
DESCRIPTION | 8 ++++---- MD5 | 19 ++++++++++--------- NEWS.md |only R/scto_get_form_definitions.R | 2 +- R/scto_get_form_metadata.R | 28 ++++++++++++++++++++++------ R/scto_meta.R | 2 +- R/scto_write.R | 7 ++++--- man/scto_get_form_metadata.Rd | 6 +++++- man/scto_write.Rd | 7 ++++--- tests/testthat/scto_auth.txt | 2 +- tests/testthat/test-scto-write.R | 2 -- 11 files changed, 52 insertions(+), 31 deletions(-)
Title: Regression Data Analysis System
Description: Perform a supervised data analysis on a database through a 'shiny' graphical interface. It includes methods such as linear regression, penalized regression, k-nearest neighbors, decision trees, ada boosting, extreme gradient boosting, random forest, neural networks, deep learning and support vector machines.
Author: Oldemar Rodriguez [aut, cre],
Andres Navarro D. [ctb, prg],
Diego Jimenez A. [ctb, prg],
Ariel Arroyo S. [ctb, prg],
Joseline Quiros M. [ctb, prg],
Alejandro Vargas V. [ctb, prg],
Jennifer Lobo V. [ctb, prg]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between regressoR versions 4.0.4 dated 2025-05-28 and 4.0.7 dated 2025-12-22
DESCRIPTION | 16 MD5 | 131 +-- NAMESPACE | 154 +-- NEWS.md | 6 R/app_config.R | 70 - R/app_server.R | 374 ++++---- R/app_ui.R | 550 ++++++------- R/cv_utils.R | 780 +++++++++--------- R/general_plots.R | 34 R/generate_code_utils.R | 1162 +++++++++++++-------------- R/golem_utils_server.R | 174 ++-- R/golem_utils_ui.R | 628 +++++++------- R/indices_utils.R | 156 +-- R/mod_Predictive_Power.R | 124 +- R/mod_Predictive_Power_utils.R | 10 R/mod_cross_val.R | 756 ++++++++--------- R/mod_cross_val_utils.R | 186 ++-- R/mod_evaluacion.R | 336 +++---- R/mod_ind_nuevos.R | 1560 +++++++++++++++++++------------------ R/mod_ind_nuevos_utils.R | 114 +- R/mod_information_page.R | 76 - R/mod_model_boost_fct.R | 240 ++--- R/mod_model_boost_utils.R | 2 R/mod_model_nnet_utils.R | 10 R/mod_model_rdim_utils.R | 152 +-- R/mod_model_regp_utils.R | 222 ++--- R/mod_model_rndf_fct.R | 308 +++---- R/mod_model_rndf_utils.R | 114 +- R/mod_model_tree_fct.R | 522 ++++++------ R/mod_model_tree_utils.R | 20 R/mod_models_utils.R | 1128 +++++++++++++------------- R/mod_train_test.R | 1372 ++++++++++++++++---------------- R/mod_varerr.R | 202 ++-- R/regressoR.R | 4 R/run_app.R | 56 - R/string_manipulation.R | 130 +-- R/utils_global.R | 412 ++++----- R/utils_inputs.R | 364 ++++---- R/utils_outputs.R | 292 +++--- inst/app.R |only inst/app/lang/diccionario.csv | 642 +++++++-------- inst/app/www/regressor_inputs.css | 248 ++--- inst/app/www/regressor_inputs.js | 156 +-- inst/app/www/regressor_options.css | 100 +- inst/app/www/regressor_options.js | 26 inst/app/www/script_regressor.js | 74 - inst/app/www/style_regressor.css | 338 ++++---- inst/golem-config.yml | 16 inst/rstudio/addins.dcf | 8 man/as_string_c.Rd | 46 - man/e.rdim.rmse.Rd | 48 - man/e.rdim.vare.Rd | 48 - man/e_JS.Rd | 42 man/e_boost_evol_error.Rd | 56 - man/e_boost_importance.Rd | 52 - man/e_coeff_lambda.Rd | 62 - man/e_posib_lambda.Rd | 64 - man/e_rf_error.Rd | 56 - man/e_rndf_importance.Rd | 54 - man/exe.Rd | 50 - man/extract_code.Rd | 46 - man/general.indices.Rd | 74 - man/mod_ind_nuevos_server.Rd | 24 man/plot_real_prediction.Rd | 48 - man/regressoR.Rd | 68 - man/run_app.Rd | 28 man/summary_indices.Rd | 36 67 files changed, 7793 insertions(+), 7664 deletions(-)
Title: Predictive Data Analysis System
Description: Perform a supervised data analysis on a database through a 'shiny' graphical interface. It includes methods such as K-Nearest Neighbors, Decision Trees, ADA Boosting, Extreme Gradient Boosting, Random Forest, Neural Networks, Deep Learning, Support Vector Machines and Bayesian Methods.
Author: Oldemar Rodriguez [aut, cre],
Diego Jimenez [ctb, prg],
Andres Navarro [ctb, prg],
Jennifer Lobo [ctb, prg]
Maintainer: Oldemar Rodriguez <oldemar.rodriguez@ucr.ac.cr>
Diff between predictoR versions 4.1.5 dated 2025-05-28 and 4.1.6 dated 2025-12-22
DESCRIPTION | 14 MD5 | 19 R/mod_acercade.R | 2 R/mod_evaluacion.R | 17 R/mod_model_xgb_utils.R | 41 - R/mod_models_utils.R | 1124 ++++++++++++++--------------- R/mod_train_test.R | 1824 ++++++++++++++++++++++++------------------------ R/predictoR.R | 4 inst/app.R |only man/e_xgb_importance.Rd | 5 man/predictoR.Rd | 4 11 files changed, 1546 insertions(+), 1508 deletions(-)
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-11-13 2.0.0
2025-05-29 1.3.0
2025-04-10 1.2.0
2024-12-12 1.1.0
2024-11-20 1.0.0
Previous versions (as known to CRANberries) which should be available via the Archive link are:
2025-04-01 0.4.0
2018-08-16 0.3.1
Title: Tools for Computational Optimal Transport
Description: Transport theory has seen much success in many fields of statistics and machine learning. We provide a variety of algorithms to compute Wasserstein distance, barycenter, and others. See Peyré and Cuturi (2019) <doi:10.1561/2200000073> for the general exposition to the study of computational optimal transport.
Author: Kisung You [aut, cre]
Maintainer: Kisung You <kisung.you@outlook.com>
Diff between T4transport versions 0.1.5 dated 2025-11-13 and 0.1.7 dated 2025-12-22
T4transport-0.1.5/T4transport/R/free_median_PF.R |only T4transport-0.1.5/T4transport/man/rmedPF.Rd |only T4transport-0.1.7/T4transport/DESCRIPTION | 8 - T4transport-0.1.7/T4transport/MD5 | 50 +++++--- T4transport-0.1.7/T4transport/NAMESPACE | 15 +- T4transport-0.1.7/T4transport/NEWS.md | 15 ++ T4transport-0.1.7/T4transport/R/RcppExports.R | 16 ++ T4transport-0.1.7/T4transport/R/auxiliary_inputs.R | 59 +++++++++ T4transport-0.1.7/T4transport/R/dist_hdist.R |only T4transport-0.1.7/T4transport/R/free_bary_GradientDescent.R | 4 T4transport-0.1.7/T4transport/R/free_median_Weiszfeld.R |only T4transport-0.1.7/T4transport/R/gromov_barycenter.R |only T4transport-0.1.7/T4transport/R/gromov_distance.R |only T4transport-0.1.7/T4transport/R/hist_bary.R |only T4transport-0.1.7/T4transport/R/hist_bary14C.R | 2 T4transport-0.1.7/T4transport/R/hist_interp.R |only T4transport-0.1.7/T4transport/R/hist_med.R |only T4transport-0.1.7/T4transport/R/other_img2measure.R |only T4transport-0.1.7/T4transport/R/package-T4transport.R | 2 T4transport-0.1.7/T4transport/R/test_time_comparison.R |only T4transport-0.1.7/T4transport/build/partial.rdb |binary T4transport-0.1.7/T4transport/inst/REFERENCES.bib | 13 ++ T4transport-0.1.7/T4transport/man/gwbary.Rd |only T4transport-0.1.7/T4transport/man/gwdist.Rd |only T4transport-0.1.7/T4transport/man/hdist.Rd |only T4transport-0.1.7/T4transport/man/histbary.Rd |only T4transport-0.1.7/T4transport/man/histbary14C.Rd | 2 T4transport-0.1.7/T4transport/man/histinterp.Rd |only T4transport-0.1.7/T4transport/man/histmed.Rd |only T4transport-0.1.7/T4transport/man/img2measure.Rd |only T4transport-0.1.7/T4transport/man/rbaryGD.Rd | 4 T4transport-0.1.7/T4transport/man/rmedWB.Rd |only T4transport-0.1.7/T4transport/src/RcppExports.cpp | 66 +++++++++++ T4transport-0.1.7/T4transport/src/src_gromov.cpp |only T4transport-0.1.7/T4transport/src/utility.cpp | 72 ++++++++++++ T4transport-0.1.7/T4transport/src/utility.h | 1 36 files changed, 289 insertions(+), 40 deletions(-)
Title: Various Functions to Facilitate Visualization of Data and
Analysis
Description: When analyzing data, plots are a helpful tool for visualizing data and interpreting statistical models. This package provides a set of simple tools for building plots incrementally, starting with an empty plot region, and adding bars, data points, regression lines, error bars, gradient legends, density distributions in the margins, and even pictures. The package builds further on R graphics by simply combining functions and settings in order to reduce the amount of code to produce for the user. As a result, the package does not use formula input or special syntax, but can be used in combination with default R plot functions. Note: Most of the functions were part of the package 'itsadug', which is now split in two packages: 1. the package 'itsadug', which contains the core functions for visualizing and evaluating nonlinear regression models, and 2. the package 'plotfunctions', which contains more general plot functions.
Author: Jacolien van Rij [aut, cre]
Maintainer: Jacolien van Rij <j.c.van.rij@rug.nl>
Diff between plotfunctions versions 1.4 dated 2020-04-28 and 1.5 dated 2025-12-22
plotfunctions-1.4/plotfunctions/man/plotfunctions.Rd |only plotfunctions-1.5/plotfunctions/DESCRIPTION | 14 plotfunctions-1.5/plotfunctions/MD5 | 94 plotfunctions-1.5/plotfunctions/NAMESPACE | 2 plotfunctions-1.5/plotfunctions/R/plot.R | 195 + plotfunctions-1.5/plotfunctions/R/plotfunctions.R | 16 plotfunctions-1.5/plotfunctions/R/util.R | 74 plotfunctions-1.5/plotfunctions/build/vignette.rds |binary plotfunctions-1.5/plotfunctions/inst/NEWS | 9 plotfunctions-1.5/plotfunctions/inst/doc/plotfunctions.R | 6 plotfunctions-1.5/plotfunctions/inst/doc/plotfunctions.html | 1211 ++++++----- plotfunctions-1.5/plotfunctions/man/addInterval.Rd | 2 plotfunctions-1.5/plotfunctions/man/add_bars.Rd | 6 plotfunctions-1.5/plotfunctions/man/add_n_points.Rd | 2 plotfunctions-1.5/plotfunctions/man/axesLabels.Rd |only plotfunctions-1.5/plotfunctions/man/check_normaldist.Rd | 2 plotfunctions-1.5/plotfunctions/man/color_contour.Rd | 6 plotfunctions-1.5/plotfunctions/man/dotplot_error.Rd | 2 plotfunctions-1.5/plotfunctions/man/drawDevArrows.Rd | 2 plotfunctions-1.5/plotfunctions/man/emptyPlot.Rd | 6 plotfunctions-1.5/plotfunctions/man/errorBars.Rd | 2 plotfunctions-1.5/plotfunctions/man/fill_area.Rd | 2 plotfunctions-1.5/plotfunctions/man/findAbsMin.Rd | 1 plotfunctions-1.5/plotfunctions/man/find_n_neighbors.Rd | 1 plotfunctions-1.5/plotfunctions/man/firstLetterCap.Rd | 1 plotfunctions-1.5/plotfunctions/man/getArrowPos.Rd | 1 plotfunctions-1.5/plotfunctions/man/getCoords.Rd | 2 plotfunctions-1.5/plotfunctions/man/getDec.Rd | 1 plotfunctions-1.5/plotfunctions/man/getFigCoords.Rd | 2 plotfunctions-1.5/plotfunctions/man/getProps.Rd | 2 plotfunctions-1.5/plotfunctions/man/getRange.Rd | 1 plotfunctions-1.5/plotfunctions/man/getRatioCoords.Rd | 1 plotfunctions-1.5/plotfunctions/man/get_palette.Rd | 1 plotfunctions-1.5/plotfunctions/man/gradientLegend.Rd | 8 plotfunctions-1.5/plotfunctions/man/group_sort.Rd | 1 plotfunctions-1.5/plotfunctions/man/inch2coords.Rd | 1 plotfunctions-1.5/plotfunctions/man/isColor.Rd | 1 plotfunctions-1.5/plotfunctions/man/keepFigRatio.Rd |only plotfunctions-1.5/plotfunctions/man/legend_margin.Rd | 2 plotfunctions-1.5/plotfunctions/man/list2str.Rd | 1 plotfunctions-1.5/plotfunctions/man/marginDensityPlot.Rd | 2 plotfunctions-1.5/plotfunctions/man/move_n_point.Rd | 1 plotfunctions-1.5/plotfunctions/man/orderBoxplot.Rd | 1 plotfunctions-1.5/plotfunctions/man/plot_error.Rd | 2 plotfunctions-1.5/plotfunctions/man/plot_image.Rd | 2 plotfunctions-1.5/plotfunctions/man/plotfunctions-package.Rd |only plotfunctions-1.5/plotfunctions/man/plotsurface.Rd | 2 plotfunctions-1.5/plotfunctions/man/se.Rd | 1 plotfunctions-1.5/plotfunctions/man/sortBoxplot.Rd | 2 plotfunctions-1.5/plotfunctions/man/sortGroups.Rd | 1 50 files changed, 1022 insertions(+), 673 deletions(-)
Title: Utilities for Managing a 'Motherduck' Database
Description: Provides helper functions, metadata utilities, and workflows for
administering and managing databases on the 'Motherduck' cloud platform.
Some features require a 'Motherduck' account (<https://motherduck.com/>).
Author: Alejandro Hagan [aut, cre]
Maintainer: Alejandro Hagan <alejandro.hagan@outlook.com>
Diff between motherduck versions 0.2.0 dated 2025-12-02 and 0.2.1 dated 2025-12-22
DESCRIPTION | 6 MD5 | 13 +- NAMESPACE | 3 NEWS.md | 5 R/connection_fns.R | 4 R/utils-db.R | 213 +++++++++++++++++++++++++++------ man/show_information_schema.Rd |only man/validate_database_exists.Rd |only man/validate_database_schema_exists.Rd |only 9 files changed, 199 insertions(+), 45 deletions(-)
Title: Unit Test Add-on for 'testthat'
Description: Enhance package 'testthat' by allowing tests to be attached to the function/object they test.
This allows to keep functional and unit test code together.
Author: Claudia Beleites [aut, cre],
Erick Oduniyi [aut]
Maintainer: Claudia Beleites <Claudia.Beleites@chemometrix.gmbh>
This is a re-admission after prior archival of version 0.2.1 dated 2020-06-24
Diff between hySpc.testthat versions 0.2.1 dated 2020-06-24 and 0.2.2 dated 2025-12-22
hySpc.testthat-0.2.1/hySpc.testthat/README.md |only hySpc.testthat-0.2.2/hySpc.testthat/DESCRIPTION | 11 ++-- hySpc.testthat-0.2.2/hySpc.testthat/LICENSE | 2 hySpc.testthat-0.2.2/hySpc.testthat/MD5 | 13 ++--- hySpc.testthat-0.2.2/hySpc.testthat/R/test-fun.R | 22 --------- hySpc.testthat-0.2.2/hySpc.testthat/R/unittest.R | 23 ---------- hySpc.testthat-0.2.2/hySpc.testthat/man/test_fun.Rd | 2 hySpc.testthat-0.2.2/hySpc.testthat/tests/testthat/test_attached.R | 2 8 files changed, 16 insertions(+), 59 deletions(-)
More information about hySpc.testthat at CRAN
Permanent link
Title: Extract Centerline from Closed Polygons
Description: Generates skeletons of closed 2D polygons using Voronoi diagrams.
It provides methods for 'sf', 'terra', and 'geos' objects to
compute polygon centerlines based on the generated skeletons.
Voronoi, G. (1908) <doi:10.1515/crll.1908.134.198>.
Author: Anatoly Tsyplenkov [aut, cre, cph]
Maintainer: Anatoly Tsyplenkov <atsyplenkov@fastmail.com>
Diff between centerline versions 0.2.4 dated 2025-09-09 and 0.2.5 dated 2025-12-22
DESCRIPTION | 8 MD5 | 28 NEWS.md | 9 R/cnt_path_guess.R | 646 ++++++++++----------- R/geom_cnt.R | 634 ++++++++++----------- R/transformers.R | 102 +-- R/types-check.R | 230 +++---- R/utils.R | 368 ++++++------ README.md | 666 +++++++++++----------- build/partial.rdb |binary man/geom_cnt.Rd | 4 man/geom_cnt_text.Rd | 422 +++++++------- tests/testthat/test-cnt_path.R | 848 ++++++++++++++-------------- tests/testthat/test-cnt_path_guess.R | 1030 +++++++++++++++++------------------ tests/testthat/test-cnt_skeleton.R | 680 +++++++++++------------ 15 files changed, 2848 insertions(+), 2827 deletions(-)
Title: Mander and Thompson Designs
Description: Implements Mander & Thompson's (2010)
<doi:10.1016/j.cct.2010.07.008> methods for two-stage designs
optimal under the alternative hypothesis for phase II [cancer] trials. Also
provides an implementation of Simon's (1989)
<doi:10.1016/0197-2456(89)90015-9> original methodology and
allows exploration of the operating characteristics of sub-optimal designs.
Author: John Kirkpatrick [aut, cre]
Maintainer: John Kirkpatrick <mtdesign@puzzledface.net>
Diff between mtdesign versions 0.1.3 dated 2025-08-23 and 0.1.4 dated 2025-12-22
DESCRIPTION | 11 +--- MD5 | 20 +++---- NEWS.md | 3 + R/functions.R | 75 ++++++++-------------------- README.md | 81 ++++++++++++++----------------- man/createGrid.Rd | 13 +++- man/figures/README-unnamed-chunk-3-1.png |binary man/figures/README-unnamed-chunk-4-1.png |binary man/figures/README-unnamed-chunk-7-1.png |binary tests/testthat/test-createGrid.R | 12 ---- tests/testthat/test-obtainDesign.R | 2 11 files changed, 87 insertions(+), 130 deletions(-)
Title: Fast Agent-Based Epi Models
Description: A flexible framework for Agent-Based Models (ABM), the 'epiworldR' package provides methods for prototyping disease outbreaks and transmission models using a 'C++' backend, making it very fast. It supports multiple epidemiological models, including the Susceptible-Infected-Susceptible (SIS), Susceptible-Infected-Removed (SIR), Susceptible-Exposed-Infected-Removed (SEIR), and others, involving arbitrary mitigation policies and multiple-disease models. Users can specify infectiousness/susceptibility rates as a function of agents' features, providing great complexity for the model dynamics. Furthermore, 'epiworldR' is ideal for simulation studies featuring large populations.
Author: George Vega Yon [aut, cre] ,
Derek Meyer [aut] ,
Andrew Pulsipher [aut] ,
Susan Holmes [rev] ,
Abinash Satapathy [rev] ,
Carinogurjao [rev],
Centers for Disease Control and Prevention [fnd]
Maintainer: George Vega Yon <g.vegayon@gmail.com>
Diff between epiworldR versions 0.10.0.0 dated 2025-11-14 and 0.11.0.0 dated 2025-12-22
epiworldR-0.10.0.0/epiworldR/R/ModelMeaslesMixing.R |only epiworldR-0.10.0.0/epiworldR/R/ModelMeaslesMixingRiskQuarantine.R |only epiworldR-0.10.0.0/epiworldR/R/ModelMeaslesSchool.R |only epiworldR-0.10.0.0/epiworldR/R/global-actions.R |only epiworldR-0.10.0.0/epiworldR/build/partial.rdb |only epiworldR-0.10.0.0/epiworldR/inst/include/epiworld/network-bones.hpp |only epiworldR-0.10.0.0/epiworldR/inst/tinytest/test-measles-quarantine-errors.R |only epiworldR-0.10.0.0/epiworldR/inst/tinytest/test-measles-quarantine-math.R |only epiworldR-0.10.0.0/epiworldR/inst/tinytest/test-measlesmixing.R |only epiworldR-0.10.0.0/epiworldR/inst/tinytest/test-measlesmixingriskquarantine-multiple.R |only epiworldR-0.10.0.0/epiworldR/inst/tinytest/test-measlesmixingriskquarantine.R |only epiworldR-0.10.0.0/epiworldR/man/ModelMeaslesMixing.Rd |only epiworldR-0.10.0.0/epiworldR/man/ModelMeaslesMixingRiskQuarantine.Rd |only epiworldR-0.10.0.0/epiworldR/man/ModelMeaslesSchool.Rd |only epiworldR-0.10.0.0/epiworldR/man/epiworld-data.Rd |only epiworldR-0.10.0.0/epiworldR/src/actions.cpp |only epiworldR-0.11.0.0/epiworldR/DESCRIPTION | 8 epiworldR-0.11.0.0/epiworldR/MD5 | 211 +++-- epiworldR-0.11.0.0/epiworldR/NAMESPACE | 11 epiworldR-0.11.0.0/epiworldR/NEWS.md | 21 epiworldR-0.11.0.0/epiworldR/R/arg-checks.R | 23 epiworldR-0.11.0.0/epiworldR/R/cpp11.R | 84 +- epiworldR-0.11.0.0/epiworldR/R/data.R | 352 ++++++++-- epiworldR-0.11.0.0/epiworldR/R/entity_tools.R |only epiworldR-0.11.0.0/epiworldR/R/events.R |only epiworldR-0.11.0.0/epiworldR/R/functions-renamed.R | 10 epiworldR-0.11.0.0/epiworldR/R/make_saver.R | 47 - epiworldR-0.11.0.0/epiworldR/R/tool.R | 25 epiworldR-0.11.0.0/epiworldR/R/virus.R | 24 epiworldR-0.11.0.0/epiworldR/README.md | 36 - epiworldR-0.11.0.0/epiworldR/inst/doc/advanced-modeling.html | 12 epiworldR-0.11.0.0/epiworldR/inst/doc/getting-started.html | 12 epiworldR-0.11.0.0/epiworldR/inst/doc/likelihood-free-mcmc.html | 8 epiworldR-0.11.0.0/epiworldR/inst/doc/mixing.html | 42 - epiworldR-0.11.0.0/epiworldR/inst/doc/run-multiple.html | 4 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/adjlist-bones.hpp | 4 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/agent-events-meat.hpp | 22 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/config.hpp | 12 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/database-bones.hpp | 125 ++- epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/database-meat.hpp | 310 ++++++++ epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/entity-bones.hpp | 3 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/epiworld.hpp | 6 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/hospitalizationstracker-bones.hpp |only epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/hospitalizationstracker-meat.hpp |only epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/misc.hpp | 54 - epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/model-bones.hpp | 69 + epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/model-meat.hpp | 284 +++++--- epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/modeldiagram-bones.hpp | 9 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/modeldiagram-meat.hpp | 2 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/diffnet.hpp | 2 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/globalevents.hpp | 3 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/init-functions.hpp | 8 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/measlesmixing.hpp | 7 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/measlesmixingriskquarantine.hpp | 7 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/measlesschool.hpp | 14 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/models.hpp | 102 ++ epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/seir.hpp | 18 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/seirconnected.hpp | 7 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/seird.hpp | 4 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/seirdconnected.hpp | 7 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/seirmixing.hpp | 4 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/seirmixingquarantine.hpp | 5 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/sir.hpp | 4 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/sirconnected.hpp | 7 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/sird.hpp | 4 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/sirdconnected.hpp | 7 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/sirlogit.hpp | 4 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/sirmixing.hpp | 4 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/sis.hpp | 4 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/sisd.hpp | 4 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/models/surveillance.hpp | 4 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/randgraph.hpp | 58 - epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/tool-distribute-meat.hpp | 95 ++ epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/userdata-bones.hpp | 16 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/virus-bones.hpp | 8 epiworldR-0.11.0.0/epiworldR/inst/include/epiworld/virus-distribute-meat.hpp | 94 ++ epiworldR-0.11.0.0/epiworldR/inst/tinytest/test-agents-and-dist-virus-tool.R | 42 - epiworldR-0.11.0.0/epiworldR/inst/tinytest/test-data.R |only epiworldR-0.11.0.0/epiworldR/inst/tinytest/test-entity_tools.R |only epiworldR-0.11.0.0/epiworldR/inst/tinytest/test-globalevents.R |only epiworldR-0.11.0.0/epiworldR/inst/tinytest/test-outbreak-active-cases.R |only epiworldR-0.11.0.0/epiworldR/inst/tinytest/test-sir.R | 2 epiworldR-0.11.0.0/epiworldR/inst/tinytest/test-sirconn.R | 2 epiworldR-0.11.0.0/epiworldR/inst/tinytest/test-tool.R | 97 ++ epiworldR-0.11.0.0/epiworldR/inst/tinytest/test-virus.R | 108 +++ epiworldR-0.11.0.0/epiworldR/man/ModelDiffNet.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSEIR.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSEIRCONN.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSEIRD.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSEIRDCONN.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSEIRMixing.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSEIRMixingQuarantine.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSIR.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSIRCONN.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSIRD.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSIRDCONN.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSIRLogit.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSIRMixing.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSIS.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSISD.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/ModelSURV.Rd | 6 epiworldR-0.11.0.0/epiworldR/man/add_entities_from_dataframe.Rd |only epiworldR-0.11.0.0/epiworldR/man/epiworld-gentime.Rd |only epiworldR-0.11.0.0/epiworldR/man/epiworld-history.Rd |only epiworldR-0.11.0.0/epiworldR/man/epiworld-hospitalizations.Rd |only epiworldR-0.11.0.0/epiworldR/man/epiworld-model-diagram.Rd | 4 epiworldR-0.11.0.0/epiworldR/man/epiworld-repnum.Rd |only epiworldR-0.11.0.0/epiworldR/man/epiworld-summaries.Rd |only epiworldR-0.11.0.0/epiworldR/man/epiworld-transition.Rd |only epiworldR-0.11.0.0/epiworldR/man/epiworld-transmissions.Rd |only epiworldR-0.11.0.0/epiworldR/man/epiworldR-deprecated.Rd | 33 epiworldR-0.11.0.0/epiworldR/man/global-events.Rd | 5 epiworldR-0.11.0.0/epiworldR/man/run_multiple.Rd | 31 epiworldR-0.11.0.0/epiworldR/man/tool.Rd | 11 epiworldR-0.11.0.0/epiworldR/man/virus.Rd | 11 epiworldR-0.11.0.0/epiworldR/src/cpp11.cpp | 160 ++-- epiworldR-0.11.0.0/epiworldR/src/db.cpp | 89 ++ epiworldR-0.11.0.0/epiworldR/src/epimodels.cpp | 160 ---- epiworldR-0.11.0.0/epiworldR/src/events.cpp |only epiworldR-0.11.0.0/epiworldR/src/model.cpp | 10 epiworldR-0.11.0.0/epiworldR/src/tool.cpp | 18 epiworldR-0.11.0.0/epiworldR/src/virus.cpp | 19 epiworldR-0.11.0.0/epiworldR/tests/tinytest.R | 7 123 files changed, 2328 insertions(+), 908 deletions(-)
Title: Tools and Infrastructure for Developing 'Scalable' 'HDF5'-Based
Methods
Description: A framework for 'scalable' statistical computing on large on-disk
matrices stored in 'HDF5' files. It provides efficient block-wise
implementations of core linear-algebra operations (matrix multiplication,
SVD, PCA, QR decomposition, and canonical correlation analysis) written
in C++ and R. These building blocks are designed not only for direct use,
but also as foundational components for developing new statistical methods
that must operate on datasets too large to fit in memory. The package
supports data provided either as 'HDF5' files or standard R objects, and is
intended for high-dimensional applications such as 'omics' and
precision-medicine research.
Author: Dolors Pelegri-Siso [aut, cre] ,
Juan R. Gonzalez [aut]
Maintainer: Dolors Pelegri-Siso <dolors.pelegri@isglobal.org>
Diff between BigDataStatMeth versions 1.0.2 dated 2025-11-29 and 1.0.3 dated 2025-12-22
DESCRIPTION | 6 MD5 | 14 - NEWS.md | 11 - README.md | 412 +++++++++++++++++++++++++++++++-------- inst/doc/BigDataStatMeth.html | 6 inst/include/BigDataStatMeth.hpp | 10 src/Makevars.in | 5 src/Makevars.win | 5 8 files changed, 359 insertions(+), 110 deletions(-)
More information about BigDataStatMeth at CRAN
Permanent link
Title: Interface to 'Vamp' Audio Analysis Plugins
Description: Provides an interface to the 'Vamp' audio analysis plugin system
<https://www.vamp-plugins.org/> developed by Queen Mary University of London's
Centre for Digital Music. Enables loading and running 'Vamp' plugins for various audio analysis
tasks including tempo detection, onset detection, spectral analysis, and
audio feature extraction. Supports mono and stereo audio with automatic
channel adaptation and domain conversion.
Author: Ed Baker [aut, cre] ,
Authors of vamp-sdk [cph] ,
Mark Borgerding [cph]
Maintainer: Ed Baker <ed@ebaker.me.uk>
Diff between ReVAMP versions 1.0.0 dated 2025-12-19 and 1.0.1 dated 2025-12-22
DESCRIPTION | 8 MD5 | 21 +- NAMESPACE | 1 NEWS.md | 6 R/RcppExports.R | 4 R/vamp_functions.R | 15 + man/runPlugins.Rd |only src/PluginLoader.cpp | 2 src/R_host.cpp | 377 +++++++++++++++++++++++++++++++++++++ src/RcppExports.cpp | 19 + src/RealTime.cpp | 4 src/RealTime_impl.cpp |only tests/testthat/test-multi-plugin.R |only 13 files changed, 441 insertions(+), 16 deletions(-)
Title: Latent Interaction (and Moderation) Analysis in Structural
Equation Models (SEM)
Description: Estimation of interaction (i.e., moderation) effects between latent variables
in structural equation models (SEM).
The supported methods are:
The constrained approach (Algina & Moulder, 2001).
The unconstrained approach (Marsh et al., 2004).
The residual centering approach (Little et al., 2006).
The double centering approach (Lin et al., 2010).
The latent moderated structural equations (LMS) approach (Klein & Moosbrugger, 2000).
The quasi-maximum likelihood (QML) approach (Klein & Muthén, 2007)
The constrained- unconstrained, residual- and double centering- approaches
are estimated via 'lavaan' (Rosseel, 2012), whilst the LMS- and QML- approaches
are estimated via 'modsem' it self. Alternatively model can be
estimated via 'Mplus' (Muthén & Muthén, 1998-2017).
References:
Algina, J., & Moulder, B. C. (2001).
<doi:10.1207/S15328007SEM0801_3>.
"A note on estimating the Jöreskog-Yang model for latent variable interaction using 'LISREL' 8.3."
Klein, A., & Moosb [...truncated...]
Author: Kjell Solem Slupphaug [aut, cre] ,
Mehmet Mehmetoglu [ctb] ,
Matthias Mittner [ctb]
Maintainer: Kjell Solem Slupphaug <slupphaugkjell@gmail.com>
Diff between modsem versions 1.0.14 dated 2025-11-18 and 1.0.15 dated 2025-12-22
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Title: Generalized Bayesian Optimal Phase II Design (G-BOP2)
Description: Provides functions for implementing the Generalized Bayesian Optimal Phase II (G-BOP2) design using various Particle Swarm Optimization (PSO) algorithms, including:
- PSO-Default, based on Kennedy and Eberhart (1995) <doi:10.1109/ICNN.1995.488968>, "Particle Swarm Optimization";
- PSO-Quantum, based on Sun, Xu, and Feng (2004) <doi:10.1109/ICCIS.2004.1460396>, "A Global Search Strategy of Quantum-Behaved Particle Swarm Optimization";
- PSO-Dexp, based on Stehlík et al. (2024) <doi:10.1016/j.asoc.2024.111913>, "A Double Exponential Particle Swarm Optimization with Non-Uniform Variates as Stochastic Tuning and Guaranteed Convergence to a Global Optimum with Sample Applications to Finding Optimal Exact Designs in Biostatistics";
- and PSO-GO.
Author: Xinying Fang [aut],
Wanni Lei [aut, cre],
Shouhao Zhou [aut],
Ping-Yang Chen [aut],
Ray-Bing Chen [aut],
Weng Kee Wong [aut],
J. Jack Lee [aut]
Maintainer: Wanni Lei <wanni.lei17@gmail.com>
Diff between GBOP2 versions 0.1.3 dated 2025-04-22 and 0.1.4 dated 2025-12-22
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Title: Guarded Resampling Workflows for Safe and Automated Machine
Learning in R
Description: Provides a guarded resampling workflow for training and evaluating machine‑learning models.
When the guarded resampling path is used, preprocessing and model fitting are re‑estimated within
each resampling split to reduce leakage risk. Supports multiple resampling schemes, integrates
with established engines in the 'tidymodels' ecosystem, and aims to improve evaluation reliability by
coordinating preprocessing, fitting, and evaluation within supported workflows. Offers a lightweight
AutoML‑style workflow by automating model training, resampling, and tuning across multiple algorithms,
while keeping evaluation design explicit and user‑controlled.
Author: Selcuk Korkmaz [aut, cre] ,
Dincer Goksuluk [aut] ,
Eda Karaismailoglu [aut]
Maintainer: Selcuk Korkmaz <selcukorkmaz@gmail.com>
Diff between fastml versions 0.7.0 dated 2025-10-29 and 0.7.5 dated 2025-12-22
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