DESCRIPTION          |    6 -
 NAMESPACE            |    9 +-
 R/bcp.R              |   73 ++++++++++-------
 R/output.R           |  218 +++++++++++++++++++++++++++++----------------------
 man/RealInt.Rd       |   11 +-
 man/bcp.Rd           |   37 ++++----
 man/coriell.Rd       |   17 ++-
 man/fitted.bcp.Rd    |only
 man/plot.bcp.Rd      |   21 ++--
 man/print.bcp.Rd     |   34 ++++---
 man/residuals.bcp.Rd |only
 man/summary.bcp.Rd   |   33 ++++---
 src/Cbcp.c           |   43 ++++++++--
 13 files changed, 307 insertions(+), 195 deletions(-)

 DESCRIPTION                    |    8 ++++----
 R/UPbrewer.R                   |    7 +++----
 R/UPpivotal.R                  |    2 +-
 R/UPsampford.R                 |    7 +++----
 R/UPtille.R                    |    8 ++++----
 R/UPtillepi2.R                 |    6 +++---
 R/balancedtwostage.R           |    4 ++--
 R/boundedrakingratio.R         |    4 ++--
 R/boundedregressionestimator.R |    4 ++--
 R/cluster.r                    |only
 R/getdata.r                    |only
 R/inclusionprobabilities.R     |    4 ++--
 R/inclusionprobastrata.R       |    5 ++---
 R/landingcube.R                |    4 ----
 R/mstage.r                     |only
 R/rakingratio.R                |    2 +-
 R/strata.r                     |only
 R/writesample.R                |    2 +-
 man/HTestimator.Rd             |   10 +++++-----
 man/UPsystematic.Rd            |    2 ++
 man/balancedstratification.Rd  |    6 +++---
 man/cluster.Rd                 |only
 man/fastflightcube.Rd          |    4 ++--
 man/getdata.Rd                 |only
 man/landingcube.Rd             |    4 ++--
 man/mstage.Rd                  |only
 man/samplecube.Rd              |   11 +++++------
 man/strata.Rd                  |only
 28 files changed, 49 insertions(+), 55 deletions(-)

 pmg-0.9-31/pmg/ChangeLog                |only
 pmg-0.9-31/pmg/DESCRIPTION.gWidgetsRGtk |only
 pmg-0.9-31/pmg/TODO.txt                 |only
 pmg-0.9-31/pmg/changes.txt              |only
 pmg-0.9-31/pmg/inst/doc/auto            |only
 pmg-0.9-31/pmg/inst/doc/pmg.pdf.2.r4    |only
 pmg-0.9-31/pmg/inst/doc/pmg.pdf.r3      |only
 pmg-0.9-31/pmg/inst/doc/pmg.pdf.r4      |only
 pmg-0.9-31/pmg/inst/doc/pmg.pdf.r5      |only
 pmg-0.9-31/pmg/inst/doc/pmg.tex         |only
 pmg-0.9-31/pmg/inst/doc/texput.log      |only
 pmg-0.9-31/pmg/readme                   |only
 pmg-0.9-32/pmg/DESCRIPTION              |    7 +--
 pmg-0.9-32/pmg/R/dModelsDialog.R        |    3 +
 pmg-0.9-32/pmg/R/menus.R                |    2 -
 pmg-0.9-32/pmg/R/pmg.R                  |   64 ++++++++++++++++++++++----------
 pmg-0.9-32/pmg/R/pmg.modelsmenu.R       |   16 ++++----
 pmg-0.9-32/pmg/inst/doc/pmg.pdf         |binary
 pmg-0.9-32/pmg/inst/doc/pmg.pdf.r22     |only
 pmg-0.9-32/pmg/inst/doc/pmg.pdf.r24     |only
 pmg-0.9-32/pmg/man/pmg.Rd               |    7 +--
 21 files changed, 62 insertions(+), 37 deletions(-)

 PBSmapping-2.09/PBSmapping/R/PBSmapping.R         |only
 PBSmapping-2.09/PBSmapping/R/zzz.R                |only
 PBSmapping-2.09/PBSmapping/inst/COPYING           |only
 PBSmapping-2.51/PBSmapping/COPYING                |only
 PBSmapping-2.51/PBSmapping/ChangeLog.txt          |only
 PBSmapping-2.51/PBSmapping/DESCRIPTION            |    8 +-
 PBSmapping-2.51/PBSmapping/R/PBSfigs.r            |only
 PBSmapping-2.51/PBSmapping/R/PBSmapping.r         |only
 PBSmapping-2.51/PBSmapping/R/zzz.r                |only
 PBSmapping-2.51/PBSmapping/data/bcBathymetry.rda  |binary
 PBSmapping-2.51/PBSmapping/data/nepacLL.rda       |binary
 PBSmapping-2.51/PBSmapping/data/nepacLLhigh.rda   |binary
 PBSmapping-2.51/PBSmapping/data/surveyData.rda    |binary
 PBSmapping-2.51/PBSmapping/data/towTracks.rda     |binary
 PBSmapping-2.51/PBSmapping/data/worldLL.rda       |binary
 PBSmapping-2.51/PBSmapping/data/worldLLhigh.rda   |binary
 PBSmapping-2.51/PBSmapping/demo/00Index           |   80 +++++++++++-----------
 PBSmapping-2.51/PBSmapping/inst/Extra             |only
 PBSmapping-2.51/PBSmapping/inst/PBSmapping-UG.pdf |binary
 PBSmapping-2.51/PBSmapping/inst/Utils             |only
 PBSmapping-2.51/PBSmapping/man/PBSprint.Rd        |    2 
 PBSmapping-2.51/PBSmapping/man/addLabels.Rd       |    2 
 PBSmapping-2.51/PBSmapping/man/addLines.Rd        |    4 -
 PBSmapping-2.51/PBSmapping/man/addPoints.Rd       |    2 
 PBSmapping-2.51/PBSmapping/man/addPolys.Rd        |   17 ++--
 PBSmapping-2.51/PBSmapping/man/addStipples.Rd     |    2 
 PBSmapping-2.51/PBSmapping/man/appendPolys.Rd     |    6 -
 PBSmapping-2.51/PBSmapping/man/bcBathymetry.Rd    |    1 
 PBSmapping-2.51/PBSmapping/man/calcArea.Rd        |    2 
 PBSmapping-2.51/PBSmapping/man/calcCentroid.Rd    |    2 
 PBSmapping-2.51/PBSmapping/man/calcConvexHull.Rd  |    2 
 PBSmapping-2.51/PBSmapping/man/calcLength.Rd      |    2 
 PBSmapping-2.51/PBSmapping/man/calcMidRange.Rd    |    2 
 PBSmapping-2.51/PBSmapping/man/calcSummary.Rd     |    2 
 PBSmapping-2.51/PBSmapping/man/calcVoronoi.Rd     |    9 +-
 PBSmapping-2.51/PBSmapping/man/clipLines.Rd       |    2 
 PBSmapping-2.51/PBSmapping/man/clipPolys.Rd       |    2 
 PBSmapping-2.51/PBSmapping/man/closePolys.Rd      |    2 
 PBSmapping-2.51/PBSmapping/man/combineEvents.Rd   |    2 
 PBSmapping-2.51/PBSmapping/man/combinePolys.Rd    |    4 -
 PBSmapping-2.51/PBSmapping/man/convCP.Rd          |    2 
 PBSmapping-2.51/PBSmapping/man/convDP.Rd          |    2 
 PBSmapping-2.51/PBSmapping/man/convLP.Rd          |    2 
 PBSmapping-2.51/PBSmapping/man/convUL.Rd          |   10 +-
 PBSmapping-2.51/PBSmapping/man/dividePolys.Rd     |    2 
 PBSmapping-2.51/PBSmapping/man/extractPolyData.Rd |    2 
 PBSmapping-2.51/PBSmapping/man/fixPOS.Rd          |    2 
 PBSmapping-2.51/PBSmapping/man/importEvents.Rd    |only
 PBSmapping-2.51/PBSmapping/man/importGSHHS.Rd     |only
 PBSmapping-2.51/PBSmapping/man/importLocs.Rd      |only
 PBSmapping-2.51/PBSmapping/man/importPolys.Rd     |only
 PBSmapping-2.51/PBSmapping/man/importShapefile.Rd |    2 
 PBSmapping-2.51/PBSmapping/man/isConvex.Rd        |    2 
 PBSmapping-2.51/PBSmapping/man/isIntersecting.Rd  |    2 
 PBSmapping-2.51/PBSmapping/man/joinPolys.Rd       |    4 -
 PBSmapping-2.51/PBSmapping/man/locateEvents.Rd    |    2 
 PBSmapping-2.51/PBSmapping/man/locatePolys.Rd     |    2 
 PBSmapping-2.51/PBSmapping/man/makeGrid.Rd        |    4 -
 PBSmapping-2.51/PBSmapping/man/makeProps.Rd       |    4 -
 PBSmapping-2.51/PBSmapping/man/makeTopography.Rd  |   29 ++++++-
 PBSmapping-2.51/PBSmapping/man/nepacLL.Rd         |   27 ++-----
 PBSmapping-2.51/PBSmapping/man/nepacLLhigh.Rd     |   25 ++----
 PBSmapping-2.51/PBSmapping/man/plotLines.Rd       |   17 +---
 PBSmapping-2.51/PBSmapping/man/plotMap.Rd         |   17 ++--
 PBSmapping-2.51/PBSmapping/man/plotPoints.Rd      |    2 
 PBSmapping-2.51/PBSmapping/man/plotPolys.Rd       |   15 ++--
 PBSmapping-2.51/PBSmapping/man/pythagoras.Rd      |    1 
 PBSmapping-2.51/PBSmapping/man/surveyData.Rd      |    1 
 PBSmapping-2.51/PBSmapping/man/thickenPolys.Rd    |    2 
 PBSmapping-2.51/PBSmapping/man/thinPolys.Rd       |    2 
 PBSmapping-2.51/PBSmapping/man/towData.Rd         |    1 
 PBSmapping-2.51/PBSmapping/man/towTracks.Rd       |    1 
 PBSmapping-2.51/PBSmapping/man/worldLL.Rd         |   19 ++---
 PBSmapping-2.51/PBSmapping/man/worldLLhigh.Rd     |   20 ++---
 PBSmapping-2.51/PBSmapping/src/convGSHHS.c        |only
 PBSmapping-2.51/PBSmapping/src/gshhs.h            |only
 76 files changed, 186 insertions(+), 194 deletions(-)

Package: LLAhclust
Version: 0.2-0
Date: 2007-11-07
Title: Hierarchical clustering of variables or objects based on the likelihood linkage analysis method
Author: Ivan Kojadinovic, Israël-César Lerman, Philippe Peter  
Maintainer: Ivan Kojadinovic 
Description:  The likelihood linkage analysis is a general agglomerative hierarchical clustering method developed in France by Lerman in a long series of research articles and books. Initially proposed in the framework of variable clustering, it has been progressively extended to allow the clustering of very general object descriptions. The approach mainly consists in replacing the value of the estimated similarity coefficient by the probability of finding a lower value under the hypothesis of 'absence of link'. The package LLAhclust contains routines for computing various types of probablistic similarity coefficients between variables or object descriptions. Once the similarity values between variables/objects are computed, a hierarchical clustering can be performed using several probabilistic and non-probabilistic aggregation criteria, and indices measuring the quality of the partitions compatible with the resulting hierarchy can be computed.
Depends: R(>= 2.1.0)
Encoding: latin1
License: CeCILL 2 (GNU GPL 2 compatible)
URL: http://www.polytech.univ-nantes.fr/LLAhclust
Packaged: Wed Jul 11 20:01:50 2007; ikojadin

 gWidgetsRGtk2-0.0-16/gWidgetsRGtk2/R/ggenericwidget.R                |only
 gWidgetsRGtk2-0.0-16/gWidgetsRGtk2/R/gvariables.R                    |only
 gWidgetsRGtk2-0.0-16/gWidgetsRGtk2/getRGtkClasses.R                  |only
 gWidgetsRGtk2-0.0-16/gWidgetsRGtk2/oldClasses.txt                    |only
 gWidgetsRGtk2-0.0-16/gWidgetsRGtk2/runMe.R                           |only
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/ChangeLog                         |only
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/DESCRIPTION                       |    6 -
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/NAMESPACE                         |    7 -
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/aaaGenerics.R                   |    4 
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/common.R                        |   27 ----
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/dnd.R                           |   13 ++
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/gcalendar.R                     |    2 
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/gcheckboxgroup.R                |    4 
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/gcommandline.R                  |    3 
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/gdfnotebook.R                   |    4 
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/gdialogs.R                      |   27 ++--
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/gexpandgroup.R                  |    8 +
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/gfile.R                         |    7 +
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/ggraphics.R                     |   22 +--
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/ggraphicsnotebook.R             |   59 ----------
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/ggrid.R                         |    8 -
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/ggroup.R                        |    4 
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/ghelp.R                         |    7 -
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/glayout.R                       |   15 ++
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/gnotebook.R                     |    4 
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/gpanedgroup.R                   |   33 +++++
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/gspinbutton.R                   |    7 +
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/gtext.R                         |    2 
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/gtkStuff.R                      |   20 +++
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/R/gvarbrowser.R                   |   10 -
 gWidgetsRGtk2-0.0-19/gWidgetsRGtk2/man/gWidgetsRGtk2-undocumented.Rd |    2 
 31 files changed, 166 insertions(+), 139 deletions(-)

Package: gWidgetstcltk
Version: 0.0-1
Date: 2007-5-6
Title: Toolkit implementation of gWidgets for tcltk pacakge
Author: John Verzani
Maintainer: John Verzani 
Depends: methods, gWidgets(>= 0.0.15), tcltk
Suggests: 
Description: Port of gWidgets API to the tcltk package
License: GPL version 2.1 or newer
URL: http://www.math.csi.cuny.edu/pmg
LazyLoad: yes
Packaged: Mon Jul  9 22:14:46 2007; verzani

 gWidgets-0.0-18/gWidgets/DESCRIPTION.mine                          |only
 gWidgets-0.0-18/gWidgets/DESCRIPTION.r10                           |only
 gWidgets-0.0-18/gWidgets/DESCRIPTION.r8                            |only
 gWidgets-0.0-19/gWidgets/ChangeLog                                 |only
 gWidgets-0.0-19/gWidgets/DESCRIPTION                               |   10 
 gWidgets-0.0-19/gWidgets/NAMESPACE                                 |   38 
 gWidgets-0.0-19/gWidgets/R/aaaGenerics.R                           |only
 gWidgets-0.0-19/gWidgets/R/bbbGenericsANY.R                        |only
 gWidgets-0.0-19/gWidgets/R/common.R                                |only
 gWidgets-0.0-19/gWidgets/R/gcommandline.R                          |only
 gWidgets-0.0-19/gWidgets/R/generics.R                              |    9 
 gWidgets-0.0-19/gWidgets/R/ggenericwidget.R                        |only
 gWidgets-0.0-19/gWidgets/R/ghelp.R                                 |only
 gWidgets-0.0-19/gWidgets/R/gvariables.R                            |only
 gWidgets-0.0-19/gWidgets/R/icons.R                                 |only
 gWidgets-0.0-19/gWidgets/R/zzz.R                                   |    7 
 gWidgets-0.0-19/gWidgets/TODO.txt                                  |only
 gWidgets-0.0-19/gWidgets/inst/doc/addToolkit.R                     |only
 gWidgets-0.0-19/gWidgets/inst/doc/addingToolkit.Rnw                |   95 +-
 gWidgets-0.0-19/gWidgets/inst/doc/addingToolkit.aux                |only
 gWidgets-0.0-19/gWidgets/inst/doc/addingToolkit.dvi                |only
 gWidgets-0.0-19/gWidgets/inst/doc/addingToolkit.log                |only
 gWidgets-0.0-19/gWidgets/inst/doc/addingToolkit.pdf                |binary
 gWidgets-0.0-19/gWidgets/inst/doc/addingToolkit.tex                |only
 gWidgets-0.0-19/gWidgets/inst/doc/addingToolkit.tex.prePostProcess |only
 gWidgets-0.0-19/gWidgets/inst/doc/addingToolkit.toc                |only
 gWidgets-0.0-19/gWidgets/inst/doc/auto/addingToolkit.Rtex.el       |only
 gWidgets-0.0-19/gWidgets/inst/doc/auto/addingToolkit.el            |only
 gWidgets-0.0-19/gWidgets/inst/doc/gWidgets.Rnw                     |  274 +++++-
 gWidgets-0.0-19/gWidgets/inst/doc/gWidgets.aux                     |only
 gWidgets-0.0-19/gWidgets/inst/doc/gWidgets.log                     |  449 +++++++++-
 gWidgets-0.0-19/gWidgets/inst/doc/gWidgets.out                     |   19 
 gWidgets-0.0-19/gWidgets/inst/doc/gWidgets.pdf                     |binary
 gWidgets-0.0-19/gWidgets/inst/doc/gWidgets.tex                     |only
 gWidgets-0.0-19/gWidgets/inst/doc/gWidgets.tex.prePostProcess      |only
 gWidgets-0.0-19/gWidgets/inst/doc/gWidgets.toc                     |only
 gWidgets-0.0-19/gWidgets/inst/doc/texput.log                       |only
 gWidgets-0.0-19/gWidgets/inst/images                               |only
 gWidgets-0.0-19/gWidgets/man/gWidgets-dialogs.Rd                   |    3 
 gWidgets-0.0-19/gWidgets/man/gWidgets-icons.Rd                     |    7 
 gWidgets-0.0-19/gWidgets/man/gWidgets-methods.Rd                   |   11 
 gWidgets-0.0-19/gWidgets/man/gWidgets-undocumented.Rd              |   60 +
 gWidgets-0.0-19/gWidgets/man/gfile.Rd                              |    3 
 gWidgets-0.0-19/gWidgets/man/ggenericwidget.Rd                     |    6 
 gWidgets-0.0-19/gWidgets/man/glayout.Rd                            |    1 
 gWidgets-0.0-19/gWidgets/man/gnotebook.Rd                          |    4 
 gWidgets-0.0-19/gWidgets/man/guiToolkit.Rd                         |    1 
 gWidgets-0.0-19/gWidgets/man/guiWidget-class.Rd                    |    1 
 48 files changed, 824 insertions(+), 174 deletions(-)

 gWidgetsrJava-0.0-5/gWidgetsrJava/NOTES.txt                         |only
 gWidgetsrJava-0.0-5/gWidgetsrJava/TODO.txt                          |only
 gWidgetsrJava-0.0-5/gWidgetsrJava/inst/java/Makefile                |only
 gWidgetsrJava-0.0-6/gWidgetsrJava/DESCRIPTION                       |    8 ++---
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/aaaGenerics.R                   |   12 ++------
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gbutton.R                       |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gcalendar.R                     |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gcheckbox.R                     |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gcheckboxgroup.R                |    4 +-
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gcommandline.R                  |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gdf.R                           |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gdfnotebook.R                   |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gdialogs.R                      |   11 ++++---
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gdroplist.R                     |    4 +-
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gedit.R                         |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gexpandgroup.R                  |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gfile.R                         |   11 +++++--
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/ggenericwidget.R                |    3 +-
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/ggraphics.R                     |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/ggraphicsnotebook.R             |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/ggroup.R                        |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/ghelp.R                         |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gimage.R                        |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/glabel.R                        |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/glayout.R                       |   15 ++++++++--
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gmenu.R                         |    4 +-
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gnotebook.R                     |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gpanedgroup.R                   |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gradio.R                        |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gseparator.R                    |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gslider.R                       |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gspinbutton.R                   |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gstatusbar.R                    |    9 ++++--
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gtable.R                        |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gtext.R                         |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gtoolbar.R                      |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gvarbrowser.R                   |    2 -
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/gvariables.R                    |   14 ++++-----
 gWidgetsrJava-0.0-6/gWidgetsrJava/R/zzz.R                           |    7 ----
 gWidgetsrJava-0.0-6/gWidgetsrJava/man/gWidgetsrJava-undocumented.Rd |    2 +
 40 files changed, 82 insertions(+), 70 deletions(-)