DESCRIPTION   |   20 ++++++++++++--------
 R/rtrend.R    |    7 +++++++
 man/buttap.Rd |    4 ++--
 man/rtrend.Rd |    6 ++++--
 4 files changed, 25 insertions(+), 12 deletions(-)

 DESCRIPTION       |    4 ++--
 src/cairo-enums.c |    4 ++--
 src/cairo-enums.h |only
 3 files changed, 4 insertions(+), 4 deletions(-)

 DESCRIPTION  |   10 +++++-----
 src/genoud.h |   13 ++++---------
 tests        |only
 3 files changed, 9 insertions(+), 14 deletions(-)

 DESCRIPTION             |    8 -
 R/AllGeneric.R          |    6 -
 R/RandVariable.R        |    2 
 inst/doc/RandVar.log    |  281 +++++++++++++++++++++++++++---------------------
 inst/doc/RandVar.pdf    |binary
 inst/doc/RandVar.tex    |   23 ++-
 man/EuclRandMatrix.Rd   |    1 
 man/EuclRandVariable.Rd |    1 
 8 files changed, 180 insertions(+), 142 deletions(-)

 DESCRIPTION  |    4 ++--
 R/zzz.r      |    2 +-
 src/Makevars |    2 +-
 3 files changed, 4 insertions(+), 4 deletions(-)

Package: plRasch
Type: Package
Title: Log Linear by Linear Asscociation models
Version: 0.1
Date: 2007-05-07
Author: Zhushan Li & Feng Hong
Depends:  survival 
Maintainer: Zhushan Li 
Description: Fit Log Linear by Linear Association models
License: GPL version 2 or newer
Packaged: Thu Jul 26 16:27:05 2007; fenghong

 DESCRIPTION              |    6 
 R/Matching.R             |    3 
 configure                |   64 +++------
 configure.ac             |    9 +
 inst/extras/makefile.icc |only
 inst/extras/makefile.sun |only
 man/GenMatch.Rd          |    5 
 man/Match.Rd             |    5 
 man/MatchBalance.Rd      |    5 
 man/Matchby.Rd           |    5 
 man/balanceMV.Rd         |    5 
 man/balanceUV.Rd         |    5 
 man/ks.boot.Rd           |    5 
 man/qqstats.Rd           |    5 
 src/cblas.h              |   22 +++
 src/cblas_dasum.c        |   40 ++++-
 src/cblas_dgemm.c        |   37 ++++-
 src/cblas_dscal.c        |   37 ++++-
 src/matching.cc          |  320 +++++++++++++++++++++++++++++++++++++++++++++--
 tests                    |only
 20 files changed, 481 insertions(+), 97 deletions(-)

 LogConcDEAD-1.0-3/LogConcDEAD/src/convhulln.c             |only
 LogConcDEAD-1.0-5/LogConcDEAD/ChangeLog                   |only
 LogConcDEAD-1.0-5/LogConcDEAD/DESCRIPTION                 |    6 +--
 LogConcDEAD-1.0-5/LogConcDEAD/R/convhullnew.R             |    2 -
 LogConcDEAD-1.0-5/LogConcDEAD/R/lcd.eval.R                |   20 +++++-----
 LogConcDEAD-1.0-5/LogConcDEAD/R/lcd.interp.R              |   26 ++++++-------
 LogConcDEAD-1.0-5/LogConcDEAD/R/lcd.mle.R                 |    4 +-
 LogConcDEAD-1.0-5/LogConcDEAD/R/plot.LogConcDEAD.R        |    2 -
 LogConcDEAD-1.0-5/LogConcDEAD/man/LogConcDEAD-internal.Rd |    2 -
 LogConcDEAD-1.0-5/LogConcDEAD/src/Makevars                |    2 -
 LogConcDEAD-1.0-5/LogConcDEAD/src/convhullnmlc.c          |   19 ++++-----
 LogConcDEAD-1.0-5/LogConcDEAD/src/renormalise.c           |   28 +++++---------
 LogConcDEAD-1.0-5/LogConcDEAD/src/sigmaeff.c              |   10 +----
 LogConcDEAD-1.0-5/LogConcDEAD/src/solvopt2.c              |   20 +++++-----
 LogConcDEAD-1.0-5/LogConcDEAD/src/subgradeff.c            |    2 -
 15 files changed, 66 insertions(+), 77 deletions(-)

 HH-2.1-2/HH/R/aaaaaa.if.R.R               |only
 HH-2.1-3/HH/DESCRIPTION                   |    6 -
 HH-2.1-3/HH/R/AAAAAAA.if.R.R              |only
 HH-2.1-3/HH/R/ARIMA-trellis.s             |  109 +++++++++++++++---------------
 HH-2.1-3/HH/R/ancova.R                    |   63 +++++------------
 HH-2.1-3/HH/R/arima.diag.hh.s             |only
 HH-2.1-3/HH/R/guiRemove.s                 |    9 +-
 HH-2.1-3/HH/R/hov.R                       |    1 
 HH-2.1-3/HH/R/interaction2wt.R            |    1 
 HH-2.1-3/HH/R/multicomp.mean.R            |    6 +
 HH-2.1-3/HH/R/multicomp.mmc.R             |    5 +
 HH-2.1-3/HH/R/plot.hov.R                  |    1 
 HH-2.1-3/HH/R/plot.multicomp.R            |   10 +-
 HH-2.1-3/HH/R/residual.plots.s            |    9 +-
 HH-2.1-3/HH/R/t.trellis.R                 |    6 -
 HH-2.1-3/HH/man/arima.diag.hh.Rd          |only
 HH-2.1-3/HH/man/bwplot.formula.Rd         |    2 
 HH-2.1-3/HH/man/extra.Rd                  |    2 
 HH-2.1-3/HH/man/gof.calculation.Rd        |    2 
 HH-2.1-3/HH/man/interaction.positioned.Rd |    1 
 HH-2.1-3/HH/man/mmc.Rd                    |    2 
 HH-2.1-3/HH/man/plot.mmc.multicomp.Rd     |   60 ++++++++--------
 HH-2.1-3/HH/man/plot.multicomp.Rd         |    2 
 HH-2.1-3/HH/man/position.Rd               |   13 +--
 HH-2.1-3/HH/man/print.tsdiagplot.Rd       |    2 
 HH-2.1-3/HH/man/seqplot.Rd                |   71 +++++++++++--------
 HH-2.1-3/HH/man/summary.arma.loop.Rd      |   14 +--
 HH-2.1-3/HH/man/t.trellis.Rd              |    2 
 28 files changed, 203 insertions(+), 196 deletions(-)

 CHANGES.LOG                    |   37 
 DESCRIPTION                    |    9 
 NAMESPACE                      |    7 
 R/alleleID.R                   |only
 R/ases.R                       |   54 
 R/convert.snp.illumina.R       |only
 R/convert.snp.mach.R           |only
 R/convert.snp.ped.R            |   83 
 R/convert.snp.text.R           |   23 
 R/export.merlin.R              |only
 R/load.gwaa.data.R             |   44 
 R/polygenic.R                  |    5 
 R/qtscore.R                    |    4 
 R/save.gwaa.data.R             |   24 
 R/save.snp.data.R              |only
 R/snp.data.R                   |    7 
 R/ss.R                         |   64 
 data/ge03d2.RData              |binary
 data/ge03d2c.RData             |binary
 data/ge03d2ex.RData            |binary
 data/srdta.RData               |binary
 inst/doc/GenABEL-internals.pdf | 1792 ++++++------
 inst/doc/GenABEL-manual.pdf    | 1031 +++----
 inst/doc/GenABEL-tutorial.pdf  | 5939 +++--------------------------------------
 man/GenABEL-package.Rd         |   32 
 man/as.character.snp.coding.Rd |only
 man/as.character.snp.strand.Rd |only
 man/convert.snp.illumina.Rd    |only
 man/convert.snp.mach.Rd        |only
 man/convert.snp.ped.Rd         |   73 
 man/convert.snp.text.Rd        |    8 
 man/convert.snp.tped.Rd        |    8 
 man/export.merlin.Rd           |only
 man/gwaa.data-class.Rd         |    6 
 man/load.gwaa.data.Rd          |   28 
 man/snp.coding-class.Rd        |only
 man/snp.data-class.Rd          |   10 
 man/snp.data.Rd                |    8 
 man/snp.mx-class.Rd            |    6 
 man/snp.strand-class.Rd        |only
 src/convert_snp_illumina.cpp   |only
 src/convert_snp_merlin.cpp     |only
 src/convert_snp_tped.cpp       |   84 
 43 files changed, 2358 insertions(+), 7028 deletions(-)