DESCRIPTION       |    8 ++++----
 R/membership.R    |    7 ++++++-
 R/partition.R     |   14 ++++++++++++--
 R/pclust.R        |    1 +
 inst/doc/clue.pdf |binary
 5 files changed, 23 insertions(+), 7 deletions(-)

Package: bayescount
Version: 0.5.1
Date: 2007-27-08
Title: Bayesian analysis of count distributions with JAGS
Author: Matthew Denwood , funded as part of the DEFRA VTRI project 0101.
Maintainer: Matthew Denwood 
Depends: bayesmix, coda, lattice
Suggests:
Description: A set of functions to apply a zero-inflated gamma Poisson (equivalent to a zero-inflated negative binomial), zero-inflated Poisson, gamma Poisson (negative binomial) or Poisson model to a set of count data using JAGS (Just Another Gibbs Sampler).  Returns information on the possible values for mean count, overdispersion and zero inflation present in count data such as faecal egg count data.  Checks for convergence using the Gelman-Rubin statistic.  Just Another Gibbs Sampler (JAGS) must be installed.  *THIS SOFTWARE IS INTENDED FOR EDUCATIONAL PURPOSES ONLY AND SHOULD NOT BE RELIED UPON FOR REAL WORLD APPLICATIONS*
License: GPL
URL:
Packaged: Mon Aug 27 15:25:17 2007; matthew

 ChangeLog                       |   25 ++++++++++++++++
 DESCRIPTION                     |   12 ++++----
 R/bin_link.R                    |   37 ++++++++++++++++--------
 R/spgrass6.R                    |   60 ++++++++++++++++++++++++----------------
 R/vect_link.R                   |   56 ++++++++++++++++++++++++-------------
 inst/doc/OSGeo_vol1_GRASS-R.pdf |only
 man/gmeta6.Rd                   |    4 +-
 man/readRAST6.Rd                |   27 ++++++++++++------
 man/readVECT6.Rd                |    6 ++--
 9 files changed, 153 insertions(+), 74 deletions(-)

Package: simba
Type: Package
Version: 0.2-5
Date: 2007-08-16
Title: A Collection of functions for similarity calculation of binary data
Author: Gerald Jurasinski 
Maintainer: Gerald Jurasinski 
Depends: R (>= 2.5.0), stats, vegan, gplots, geoR, plotrix
Description: Besides a function for the calculation of similarity measures with 
	binary data (for instance presence/absence species data) the package 
	contains some simple wrapper functions for reshaping species lists into 
	matrices and vice versa and some other functions for further processing 
	of similarity data (Mantel-like permutation procedures) as well as some other useful stuff.
License: GPL version 2
URL: http://www.r-project.org
Packaged: Mon Aug 27 15:52:14 2007; hornik

Package: proftools
Title: Profile Output Processing Tools for R
Version: 0.0-1
Author: Luke Tierney 
Description: Tools for examining Rprof profile output.
Maintainer: Luke Tierney 
Suggests: graph,Rgraphviz
License: GPL
Packaged: Sun Aug 26 13:32:44 2007; luke

Package: rgcvpack
Version: 0.1-1
Date: 2007/08/17
Title: R Interface for GCVPACK Fortran Package
Author: Xianhong Xie 
Maintainer: Xianhong Xie 
Description: Thin plate spline fitting and prediction
Depends: R (>= 2.1.0)
License: GPL version 2 or later
URL: http://www.stat.wisc.edu/~xie
Packaged: Fri Aug 17 15:55:03 2007; xie

 DESCRIPTION                                   |    5 
 R/locfdr.R                                    |   15 
 inst/doc/locfdr-example-Compute-local-fdr.pdf |    6 
 inst/doc/locfdr-example.Rnw                   |    3 
 inst/doc/locfdr-example.pdf                   |  821 +++++++++++++-------------
 man/locfdr.Rd                                 |    4 
 6 files changed, 432 insertions(+), 422 deletions(-)

Package: LLN
Type: Package
Title: Learning with latent networks
Version: 1.0
Date: 2007-07-04
Author: Charles Bouveyron & Hugh Chipman
Maintainer: Charles Bouveyron 
Description: This is a new framework in which graph-structured data are used to train a classifier in a latent space, and then classify new nodes. During the learning phase, a latent representation of the network is first learned and a supervised classifier is then built in the learned latent space. In order to classify new nodes, the positions of these nodes in the learned latent space are estimated using the existing links between the new nodes and the learning set nodes.  It is then possible to apply the supervised classifier to assign each new node to one of the classes.
License: GPL2.0
Packaged: Mon Aug 27 12:23:32 2007; charles

 DESCRIPTION     |    6 +++---
 R/epicalc.R     |   45 +++++++++++++++++++++++++++++----------------
 man/matchTab.rd |   11 +++++++++++
 3 files changed, 43 insertions(+), 19 deletions(-)

 emdbook-1.0.8.1/emdbook/chap7.tex                      |only
 emdbook-1.0.8.1/emdbook/data/WrasseRecruitment.tab     |only
 emdbook-1.0.8.1/emdbook/data/WrasseRecruitment_sum.tab |only
 emdbook-1.0.8.1/emdbook/data/WrasseSettlement.tab      |only
 emdbook-1.0.8.1/emdbook/gridsearch2d.Rd                |only
 emdbook-1.0.8.1/emdbook/man/Wrasse.Rd                  |only
 emdbook-1.0.8.1/emdbook/weaver_debug_log.txt           |only
 emdbook-1.0.9/emdbook/ChangeLog                        |    4 ++++
 emdbook-1.0.9/emdbook/DESCRIPTION                      |    6 +++---
 emdbook-1.0.9/emdbook/R/emdbook.R                      |   12 ++++++++----
 emdbook-1.0.9/emdbook/data/DamselRecruitment.tab       |only
 emdbook-1.0.9/emdbook/data/DamselRecruitment_sum.tab   |only
 emdbook-1.0.9/emdbook/data/DamselSettlement.tab        |only
 emdbook-1.0.9/emdbook/inst/ChangeLog                   |    4 ++++
 emdbook-1.0.9/emdbook/man/Damsel.Rd                    |only
 emdbook-1.0.9/emdbook/man/lambertW.Rd                  |    3 ++-
 16 files changed, 21 insertions(+), 8 deletions(-)