Tue, 04 Sep 2007

New package SpatialNP with initial version 0.9
Package: SpatialNP
Type: Package
Title: Multivariate nonparametric methods based on spatial signs and ranks
Version: 0.9
Date: 2007-08-30
Author: Seija Sirkia, Jaakko Nevalainen, Klaus Nordhausen, Hannu Oja
Maintainer: Seija Sirkia 
Depends: ICSNP
Description: This package contains test and estimates of location, tests of independence, tests of sphericity, several estimates of shape and regression all based on spatial signs, symmetrized signs, ranks and signed ranks.
License: GPL 2.0 or higher
Packaged: Tue Sep  4 14:14:37 2007; ssirkia

More information about SpatialNP at CRAN
Permanent link
Package QCAGUI updated to version 1.2-8 with previous version 1.2-7 dated 2007-03-11
Diff between QCAGUI versions 1.2-7 dated 2007-03-11 and 1.2-8 dated 2007-09-04
 QCAGUI-1.2-7/QCAGUI/R/statistics-means-menu.R       |only
 QCAGUI-1.2-7/QCAGUI/R/statistics-models-menu.R      |only
 QCAGUI-1.2-7/QCAGUI/man/Confint.Rd                  |only
 QCAGUI-1.2-7/QCAGUI/man/Scatter3DDialog.Rd          |only
 QCAGUI-1.2-7/QCAGUI/man/scatter3d.Rd                |only
 QCAGUI-1.2-8/QCAGUI/DESCRIPTION                     |    8 
 QCAGUI-1.2-8/QCAGUI/NAMESPACE                       |   10 
 QCAGUI-1.2-8/QCAGUI/R/data-menu.R                   |   99 ----
 QCAGUI-1.2-8/QCAGUI/R/graphs-menu.R                 |  239 ----------
 QCAGUI-1.2-8/QCAGUI/R/model-menu.R                  |  453 --------------------
 QCAGUI-1.2-8/QCAGUI/R/startup.R                     |    3 
 QCAGUI-1.2-8/QCAGUI/R/utilities.R                   |  424 ------------------
 QCAGUI-1.2-8/QCAGUI/inst/CHANGES                    |    8 
 QCAGUI-1.2-8/QCAGUI/inst/doc/User-Manual-QCAGUI.pdf |binary
 QCAGUI-1.2-8/QCAGUI/man/aboutQCAGUI.Rd              |    2 
 15 files changed, 18 insertions(+), 1228 deletions(-)
More information about QCAGUI at CRAN
Permanent link
Package npmlreg updated to version 0.43 with previous version 0.40 dated 2006-11-30
Diff between npmlreg versions 0.40 dated 2006-11-30 and 0.43 dated 2007-09-04
 DESCRIPTION                |    6 +-
 INDEX                      |   45 ++++++++++----------
 R/alldist.R                |   59 +++++++++++++++-----------
 R/allvc.R                  |   79 ++++++++++++++++++++---------------
 R/print.glmmGQ.R           |    5 +-
 R/print.glmmNPML.R         |   14 ++++--
 R/summary.glmmGQ.R         |   27 +++++++-----
 R/summary.glmmNPML.R       |   35 ++++++++-------
 inst/doc/Rplots.ps         |only
 inst/doc/npmlreg-v-008.eps |only
 inst/doc/npmlreg-v-008.pdf |only
 inst/doc/npmlreg-v-012.eps |only
 inst/doc/npmlreg-v-012.pdf |only
 inst/doc/npmlreg-v-015.eps |only
 inst/doc/npmlreg-v-015.pdf |only
 inst/doc/npmlreg-v-034.eps |only
 inst/doc/npmlreg-v-034.pdf |only
 inst/doc/npmlreg-v-035.eps |only
 inst/doc/npmlreg-v-035.pdf |only
 inst/doc/npmlreg-v-041.eps |only
 inst/doc/npmlreg-v-041.pdf |only
 inst/doc/npmlreg-v-042.eps |only
 inst/doc/npmlreg-v-042.pdf |only
 inst/doc/npmlreg-v.Stex    |   99 +++++++++++++++++++++++----------------------
 inst/doc/npmlreg-v.aux     |only
 inst/doc/npmlreg-v.log     |only
 inst/doc/npmlreg-v.pdf     |binary
 inst/doc/npmlreg-v.tex     |only
 inst/doc/npmlreg-v.toc     |only
 man/alldist.Rd             |    5 +-
 man/family.glmmNPML.Rd     |   12 ++---
 man/npmlreg.package.Rd     |    8 +--
 man/plot.glmmNPML.Rd       |   10 ++--
 man/predict.glmmNPML.Rd    |    6 +-
 man/summary.glmmNPML.Rd    |   11 ++---
 35 files changed, 228 insertions(+), 193 deletions(-)
More information about npmlreg at CRAN
Permanent link
Package GenABEL updated to version 1.2-8 with previous version 1.2-6 dated 2007-08-07
Diff between GenABEL versions 1.2-6 dated 2007-08-07 and 1.2-8 dated 2007-09-04
 GenABEL-1.2-6/GenABEL/demo/exge03d2.R                |only
 GenABEL-1.2-6/GenABEL/inst/doc/GenABEL-internals.pdf |only
 GenABEL-1.2-6/GenABEL/man/ge03d2c.Rd                 |only
 GenABEL-1.2-6/GenABEL/man/ge03d2ex.Rd                |only
 GenABEL-1.2-8/GenABEL/CHANGES.LOG                    |  549 
 GenABEL-1.2-8/GenABEL/DESCRIPTION                    |    6 
 GenABEL-1.2-8/GenABEL/NAMESPACE                      |    3 
 GenABEL-1.2-8/GenABEL/R/Xcheck.R                     |   63 
 GenABEL-1.2-8/GenABEL/R/Xfix.R                       |   15 
 GenABEL-1.2-8/GenABEL/R/add.plot.R                   |   18 
 GenABEL-1.2-8/GenABEL/R/ccfast.R                     |   20 
 GenABEL-1.2-8/GenABEL/R/check.marker.R               |  230 
 GenABEL-1.2-8/GenABEL/R/check.marker.internal.R      |   58 
 GenABEL-1.2-8/GenABEL/R/convert.snp.ped.R            |   10 
 GenABEL-1.2-8/GenABEL/R/crnames.R                    |only
 GenABEL-1.2-8/GenABEL/R/descriptives.trait.R         |   12 
 GenABEL-1.2-8/GenABEL/R/egscore.R                    |only
 GenABEL-1.2-8/GenABEL/R/export.merlin.R              |    6 
 GenABEL-1.2-8/GenABEL/R/grammar.R                    |   20 
 GenABEL-1.2-8/GenABEL/R/load.gwaa.data.R             |    1 
 GenABEL-1.2-8/GenABEL/R/mmscore.R                    |   24 
 GenABEL-1.2-8/GenABEL/R/plot.scan.gwaa.R             |   58 
 GenABEL-1.2-8/GenABEL/R/polygenic.R                  |   10 
 GenABEL-1.2-8/GenABEL/R/qtscore.R                    |   35 
 GenABEL-1.2-8/GenABEL/R/refresh.gwaa.data.R          |only
 GenABEL-1.2-8/GenABEL/R/scan.glm.2D.R                |    1 
 GenABEL-1.2-8/GenABEL/R/scan.glm.R                   |    1 
 GenABEL-1.2-8/GenABEL/R/scan.haplo.2D.R              |    1 
 GenABEL-1.2-8/GenABEL/R/snp.subset.R                 |    2 
 GenABEL-1.2-8/GenABEL/R/summary.check.marker.R       |   30 
 GenABEL-1.2-8/GenABEL/R/summary.snp.data.R           |   12 
 GenABEL-1.2-8/GenABEL/R/update.check.marker.R        |only
 GenABEL-1.2-8/GenABEL/data/ge03d2.RData              |binary
 GenABEL-1.2-8/GenABEL/data/ge03d2c.RData             |binary
 GenABEL-1.2-8/GenABEL/data/ge03d2ex.RData            |binary
 GenABEL-1.2-8/GenABEL/data/srdta.RData               |binary
 GenABEL-1.2-8/GenABEL/demo/00Index                   |    2 
 GenABEL-1.2-8/GenABEL/demo/ge03d2.R                  |  315 
 GenABEL-1.2-8/GenABEL/demo/ge03d2ex.R                |only
 GenABEL-1.2-8/GenABEL/inst/doc/GenABEL-manual.pdf    | 4652 +++--
 GenABEL-1.2-8/GenABEL/inst/doc/GenABEL-tutorial.pdf  |16360 +++++++++++++++++--
 GenABEL-1.2-8/GenABEL/inst/doc/index.html            |    4 
 GenABEL-1.2-8/GenABEL/man/GenABEL-package.Rd         |   25 
 GenABEL-1.2-8/GenABEL/man/add.plot.Rd                |    2 
 GenABEL-1.2-8/GenABEL/man/ccfast.Rd                  |    3 
 GenABEL-1.2-8/GenABEL/man/check.marker.Rd            |    8 
 GenABEL-1.2-8/GenABEL/man/convert.snp.ped.Rd         |   11 
 GenABEL-1.2-8/GenABEL/man/crnames.Rd                 |only
 GenABEL-1.2-8/GenABEL/man/descriptives.trait.Rd      |    6 
 GenABEL-1.2-8/GenABEL/man/egscore.Rd                 |only
 GenABEL-1.2-8/GenABEL/man/ge03d2.Rd                  |   21 
 GenABEL-1.2-8/GenABEL/man/grammar.Rd                 |    5 
 GenABEL-1.2-8/GenABEL/man/mmscore.Rd                 |    6 
 GenABEL-1.2-8/GenABEL/man/plot.check.marker.Rd       |    1 
 GenABEL-1.2-8/GenABEL/man/plot.scan.gwaa.Rd          |    3 
 GenABEL-1.2-8/GenABEL/man/qtscore.Rd                 |    5 
 GenABEL-1.2-8/GenABEL/man/refresh.gwaa.data.Rd       |only
 GenABEL-1.2-8/GenABEL/man/snp.subset.Rd              |    9 
 GenABEL-1.2-8/GenABEL/man/summary.check.marker.Rd    |    2 
 GenABEL-1.2-8/GenABEL/src/gwaa.c                     |  133 
 60 files changed, 18920 insertions(+), 3838 deletions(-)
More information about GenABEL at CRAN
Permanent link
Package cluster updated to version 1.11.8 with previous version 1.11.7 dated 2007-06-05
Diff between cluster versions 1.11.7 dated 2007-06-05 and 1.11.8 dated 2007-09-04
 ChangeLog   |    9 
 DESCRIPTION |    6 
 src/daisy.f |  162 ++++++++---------
 src/dysta.f |   58 +++---
 src/fanny.c |    2 
 src/mona.f  |  266 ++++++++++++++--------------
 src/twins.f |  558 ++++++++++++++++++++++++++++++------------------------------
 7 files changed, 540 insertions(+), 521 deletions(-)
More information about cluster at CRAN
Permanent link
New package choplump with initial version 0.9-3
Package: choplump
Type: Package
Title: Choplump tests 
Version: 0.9-3
Date: 2007-08-29
Author: M.P. Fay
Maintainer: Michael P. Fay 
Depends: R (>= 2.5.0), stats
Description: Choplump Tests are Permutation Tests for Comparing Two Groups with Some Positive but Many Zero Responses
License: GPL
Packaged: Tue Sep  4 11:18:36 2007; faym

More information about choplump at CRAN
Permanent link
New package plink with initial version 0.0-0
Package: plink
Version: 0.0-0
Date: 2007-08-30
Title: Separate Calibration Linking Methods
Depends: R (>= 2.4.1), methods, lattice
Author: Jonathan Weeks 
Maintainer: Jonathan Weeks 
Description: This package uses unidimensional item response theory methods to compute linking 
    constants and conduct chain linking of tests for multiple groups under a nonequivalent groups 
    common item design.  It allows for mean/mean, mean/sigma, Haebara, and Stocking-Lord calibrations 
    of single-format or mixed-format dichotomous (1PL, 2PL, and 3PL) and polytomous (graded response
    partial credit/generalized partial credit, nominal, and multiple-choice model) common items. 
LazyLoad: Yes
LazyData: Yes
License: GPL version 2 or newer
Packaged: Tue Sep  4 02:09:14 2007; Jonathan Weeks

More information about plink at CRAN
Permanent link
Package spgrass6 updated to version 0.4-2 with previous version 0.4-1 dated 2007-08-27
Diff between spgrass6 versions 0.4-1 dated 2007-08-27 and 0.4-2 dated 2007-09-04
 ChangeLog      |    4 ++++
 DESCRIPTION    |    6 +++---
 R/vect_link.R  |    2 +-
 inst/ChangeLog |   29 ++++++++++++++++++++++++++++-
 4 files changed, 36 insertions(+), 5 deletions(-)
More information about spgrass6 at CRAN
Permanent link
Package penalized updated to version 0.9-6 with previous version 0.9-5 dated 2007-09-01
Diff between penalized versions 0.9-5 dated 2007-09-01 and 0.9-6 dated 2007-09-04
 DESCRIPTION      |    6 ++---
 R/cox.R          |    9 +++++--
 man/cvl.Rd       |   64 ++++++++++++++++++++++++++++---------------------------
 man/penalized.Rd |   16 ++++++++-----
 man/plotpath.Rd  |    3 +-
 5 files changed, 54 insertions(+), 44 deletions(-)
More information about penalized at CRAN
Permanent link
Package JGR updated to version 1.5-5 with previous version 1.5-4 dated 2007-09-01
Diff between JGR versions 1.5-4 dated 2007-09-01 and 1.5-5 dated 2007-09-04
 DESCRIPTION         |    2 +-
 NEWS                |    5 +++++
 R/JGR.R             |    4 ++--
 inst/java/JGR.jar   |binary
 inst/scripts/run.in |    2 +-
 run.in              |    2 +-
 6 files changed, 10 insertions(+), 5 deletions(-)
More information about JGR at CRAN
Permanent link
Package Geneland updated to version 2.0.7 with previous version 2.0.6 dated 2007-07-09
Diff between Geneland versions 2.0.6 dated 2007-07-09 and 2.0.7 dated 2007-09-04
 ChangeLog               |   14 +-
 DESCRIPTION             |    4 
 R/Plotnpop.R            |    4 
 R/Plotntile.R           |    4 
 R/PostProcessChain.R    |   25 +++-
 R/PosteriorMode.R       |    8 -
 R/mcmcFmodel.R          |   10 +
 R/zzz.R                 |    2 
 man/Geneland-package.Rd |    4 
 man/PostProcessChain.Rd |    6 -
 man/PosteriorMode.Rd    |    4 
 src/main.f              |  285 +++++++++++++++++++++++++++---------------------
 src/postprocesschain.f  |   61 +++++++++-
 13 files changed, 267 insertions(+), 164 deletions(-)
More information about Geneland at CRAN
Permanent link

Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.