DESCRIPTION          |    6 +++---
 inst/book/ex1.09.R   |    4 ++--
 inst/doc/changes.txt |    4 ++++
 3 files changed, 9 insertions(+), 5 deletions(-)

 pairwiseCI-0.1-3/pairwiseCI/R/nonsigletters.R                 |only
 pairwiseCI-0.1-3/pairwiseCI/man/nonsigletters.Rd              |only
 pairwiseCI-0.1-3/pairwiseCI/man/print.nonsigletters.Rd        |only
 pairwiseCI-0.1-6/pairwiseCI/DESCRIPTION                       |   14 +-
 pairwiseCI-0.1-6/pairwiseCI/R/Prop.diffAdd2.R                 |only
 pairwiseCI-0.1-6/pairwiseCI/R/Prop.ratio.R                    |   16 +-
 pairwiseCI-0.1-6/pairwiseCI/R/pairwiseCI.R                    |    4 
 pairwiseCI-0.1-6/pairwiseCI/R/plot.pairwiseCI.R               |    9 -
 pairwiseCI-0.1-6/pairwiseCI/R/print.pairwiseCI.R              |    9 -
 pairwiseCI-0.1-6/pairwiseCI/R/summary.pairwiseCI.R            |    9 -
 pairwiseCI-0.1-6/pairwiseCI/R/summary.pairwiseTest.R          |   35 +----
 pairwiseCI-0.1-6/pairwiseCI/man/Oats.Rd                       |    7 -
 pairwiseCI-0.1-6/pairwiseCI/man/Prop.test.Rd                  |   11 -
 pairwiseCI-0.1-6/pairwiseCI/man/bean.Rd                       |    6 
 pairwiseCI-0.1-6/pairwiseCI/man/behenic.Rd                    |    5 
 pairwiseCI-0.1-6/pairwiseCI/man/cabbage.Rd                    |    2 
 pairwiseCI-0.1-6/pairwiseCI/man/dieldrin.Rd                   |    6 
 pairwiseCI-0.1-6/pairwiseCI/man/pairwiseCI.Rd                 |   67 +++++-----
 pairwiseCI-0.1-6/pairwiseCI/man/pairwiseCI.package.Rd         |    5 
 pairwiseCI-0.1-6/pairwiseCI/man/pairwiseCIInt.Rd              |   12 +
 pairwiseCI-0.1-6/pairwiseCI/man/pairwiseCImethodsCont.Rd      |   11 +
 pairwiseCI-0.1-6/pairwiseCI/man/pairwiseCImethodsProp.Rd      |   26 ++-
 pairwiseCI-0.1-6/pairwiseCI/man/pairwiseTest.Rd               |   30 ++--
 pairwiseCI-0.1-6/pairwiseCI/man/pairwiseTestInt.Rd            |    4 
 pairwiseCI-0.1-6/pairwiseCI/man/plot.pairwiseCI.Rd            |   22 +--
 pairwiseCI-0.1-6/pairwiseCI/man/print.pairwiseCI.Rd           |    4 
 pairwiseCI-0.1-6/pairwiseCI/man/print.pairwiseTest.Rd         |    4 
 pairwiseCI-0.1-6/pairwiseCI/man/print.summary.pairwiseCI.Rd   |    4 
 pairwiseCI-0.1-6/pairwiseCI/man/print.summary.pairwiseTest.Rd |    4 
 pairwiseCI-0.1-6/pairwiseCI/man/repellent.Rd                  |    8 -
 pairwiseCI-0.1-6/pairwiseCI/man/rooting.Rd                    |   17 +-
 pairwiseCI-0.1-6/pairwiseCI/man/sodium.Rd                     |    6 
 pairwiseCI-0.1-6/pairwiseCI/man/summary.pairwiseCI.Rd         |    4 
 pairwiseCI-0.1-6/pairwiseCI/man/summary.pairwiseTest.Rd       |   63 ++-------
 34 files changed, 215 insertions(+), 209 deletions(-)

Package: JudgeIt
Version: 1.1.6.3
Date: 2007-09-10
Title: JudgeIt
Author: Andrew Gelman ,
        Gary King ,
        Andrew C. Thomas 
Maintainer: Andrew C. Thomas 
Depends: R (>= 2.4)
Description: Calculates bias, responsiveness, and other characteristics of
        two-party electoral systems, with district-level electoral and
        other data.
License: GPL version 2 or newer
URL: http://gking.harvard.edu/
Packaged: Mon Sep 10 09:22:40 2007; king

Package: lga
Version: 1.0-0
Date: 2007-09-10
Title: Tools for linear grouping analysis (LGA)
Author: Justin Harrington
Maintainer: Justin Harrington 
Depends: R (>= 2.2.1)
Imports: boot, lattice
Suggests: snow
Description: Tools for linear grouping analysis. Two user-level functions: gap and lga.
License: GPL
Packaged: Mon Sep 10 08:41:14 2007; harringt

 DESCRIPTION                 |    7 
 NAMESPACE                   |    2 
 R/Dref.R                    |    6 
 R/DrefWeights.R             |only
 R/Logistic.R                |only
 R/gnm.R                     |   12 
 R/gnmFit.R                  |    2 
 R/gnmTools.R                |   37 
 inst/CHANGES                |   26 
 inst/doc/gnmOverview.Rnw    |   81 
 inst/doc/gnmOverview.pdf    | 6821 +++++++++++++++++++++++---------------------
 man/Dref.Rd                 |   69 
 man/MPinv.Rd                |    2 
 man/pickCoef.Rd             |    8 
 man/voting.Rd               |   17 
 tests/diagonalRef.Rout.save |    4 
 16 files changed, 3775 insertions(+), 3319 deletions(-)

 ChangeLog               |   15 +---------
 DESCRIPTION             |    4 +-
 R/Geneland.GUI.R        |   69 ++++++++++++++++--------------------------------
 R/zzz.R                 |    2 -
 man/Geneland-package.Rd |    2 -
 5 files changed, 30 insertions(+), 62 deletions(-)

 DESCRIPTION         |    6 +--
 man/track.future.Rd |   34 ++++++++++++-------
 man/trackObjs.Rd    |   92 +++++++++++++++++++++++++++++++---------------------
 3 files changed, 80 insertions(+), 52 deletions(-)

 RSVGTipsDevice-0.7-3/RSVGTipsDevice/DESCRIPTION                  |   26 +++----
 RSVGTipsDevice-0.7-3/RSVGTipsDevice/NEWS                         |    5 +
 RSVGTipsDevice-0.7-3/RSVGTipsDevice/R/SVG.R                      |   34 +++++++---
 RSVGTipsDevice-0.7-3/RSVGTipsDevice/man/RSVGTipsDevice.Rd        |   24 +++++++
 RSVGTipsDevice-0.7-3/RSVGTipsDevice/man/devSVGTips.Rd            |   24 ++++---
 RSVGTipsDevice-0.7-3/RSVGTipsDevice/man/encodeSVGSpecialChars.Rd |only
 RSVGTipsDevice-0.7-3/RSVGTipsDevice/man/setSVGShapeContents.Rd   |    7 ++
 RSVGTipsDevice-0.7-3/RSVGTipsDevice/man/setSVGShapeToolTip.Rd    |   22 +++++-
 RSVGTipsDevice-0.7-3/RSVGTipsDevice/man/setSVGShapeURL.Rd        |    7 +-
 RSVGTipsDevice-0.7-3/RSVGTipsDevice/src/devSVG.c                 |   28 +++++++-
 RSVGTipsDevice-0.7.1/RSVGTipsDevice/src/Makevars                 |only
 11 files changed, 138 insertions(+), 39 deletions(-)

 DESCRIPTION                         |    6 ++--
 NAMESPACE                           |    1 
 NEWS                                |    8 +++++
 R/rstream.R                         |    3 ++
 R/rstream_lecuyer.R                 |   15 ++++++----
 R/rstream_mrg32k3a.R                |   17 +++++++-----
 man/rstream-class.Rd                |    5 +++
 man/rstream-package.Rd              |only
 man/rstream.RNG.Rd                  |    3 ++
 man/rstream.antithetic-methods.Rd   |    2 +
 man/rstream.clone-methods.Rd        |    2 +
 man/rstream.incprecision-methods.Rd |    2 +
 man/rstream.lecuyer-class.Rd        |    3 ++
 man/rstream.mrg32k3a-class.Rd       |    3 ++
 man/rstream.name-methods.Rd         |    2 +
 man/rstream.packed-methods.Rd       |    2 +
 man/rstream.reset-methods.Rd        |    2 +
 man/rstream.runif-class.Rd          |    3 ++
 man/rstream.sample-methods.Rd       |    2 +
 man/rstream.substream-methods.Rd    |    2 +
 src/R_RngStreams.c                  |   46 ++++++++++++++++++---------------
 src/R_RngStreams.h                  |   11 +++----
 tests/test_lecuyer.R                |   10 ++++++-
 tests/test_mrg32k3a.R               |    8 +++++
 tests/test_routines.R               |   50 +++++++++++++++++++++++++++++++++---
 25 files changed, 161 insertions(+), 47 deletions(-)

 DESCRIPTION                |    9 +++++----
 INDEX                      |    3 ++-
 configure                  |    1 +
 inst/tst/bin/rcom_test.exe |binary
 man/operator1.Rd           |    6 +++---
 man/operator2.Rd           |   24 ++++--------------------
 man/operator3.Rd           |only
 src/Makevars               |   15 +++++++--------
 src/public.cpp             |   43 +++++++++++++++++++++----------------------
 src/rcom.h                 |    9 +++++++--
 src/server.c               |    1 +
 src/util.c                 |    5 ++++-
 12 files changed, 55 insertions(+), 61 deletions(-)

 DESCRIPTION           |    6 +++---
 NAMESPACE             |    2 ++
 R/base3rows.R         |    6 +++---
 R/qmcc.R              |    3 +--
 R/rowDominanceShort.R |only
 R/shortqca.R          |only
 inst/CHANGES          |   17 +++++++++++------
 inst/TODO             |    2 +-
 man/QCA-internal.Rd   |    2 ++
 man/QCA.package.Rd    |   10 ++++++----
 man/qmcc.Rd           |    4 ++--
 man/shortqca.Rd       |only
 12 files changed, 31 insertions(+), 21 deletions(-)

 DESCRIPTION       |   20 +-
 HISTORY           |only
 R/fmri.R          |    6 
 R/io.R            |  293 ++++++++++++++++++++++++++++++-------
 R/lm.R            |    3 
 man/fmri.lm.Rd    |    7 
 man/write.AFNI.Rd |   34 +++-
 src/misc.f        |  426 ------------------------------------------------------
 src/ngca.f        |   22 +-
 src/vaws3D.f      |   96 ++++++------
 10 files changed, 352 insertions(+), 555 deletions(-)

 DEoptim-1.1-8/DEoptim/NAMESPACE      |only
 DEoptim-1.2-0/DEoptim/CHANGES        |only
 DEoptim-1.2-0/DEoptim/DESCRIPTION    |    6 -
 DEoptim-1.2-0/DEoptim/R/DEoptim.R    |  137 +++++++++++++++++++----------------
 DEoptim-1.2-0/DEoptim/R/zzz.R        |only
 DEoptim-1.2-0/DEoptim/README         |only
 DEoptim-1.2-0/DEoptim/inst/CITATION  |   14 ++-
 DEoptim-1.2-0/DEoptim/man/DEoptim.Rd |   76 ++++++++-----------
 8 files changed, 119 insertions(+), 114 deletions(-)

 DESCRIPTION   |    6 +++---
 R/within.R    |   53 ++---------------------------------------------------
 man/within.Rd |    8 +++-----
 3 files changed, 8 insertions(+), 59 deletions(-)

 adegenet-1.0-1/adegenet/src/testJ.c             |only
 adegenet-1.0-2/adegenet/DESCRIPTION             |    7 +--
 adegenet-1.0-2/adegenet/R/HWE.R                 |    8 +++-
 adegenet-1.0-2/adegenet/R/auxil.R               |   10 +++++
 adegenet-1.0-2/adegenet/R/classes.R             |   10 ++---
 adegenet-1.0-2/adegenet/R/export.R              |    8 ++--
 adegenet-1.0-2/adegenet/R/import.R              |    4 +-
 adegenet-1.0-2/adegenet/R/monmonier.R           |   27 +++++++-------
 adegenet-1.0-2/adegenet/R/zzz.R                 |    2 -
 adegenet-1.0-2/adegenet/data/sim2pop.rda        |only
 adegenet-1.0-2/adegenet/man/HWE.Rd              |    1 
 adegenet-1.0-2/adegenet/man/adegenet.package.Rd |    9 +++-
 adegenet-1.0-2/adegenet/man/auxil.Rd            |    9 +++-
 adegenet-1.0-2/adegenet/man/chooseCN.Rd         |    3 +
 adegenet-1.0-2/adegenet/man/dist.genpop.Rd      |    3 +
 adegenet-1.0-2/adegenet/man/export.Rd           |    1 
 adegenet-1.0-2/adegenet/man/genind.Rd           |    1 
 adegenet-1.0-2/adegenet/man/genpop.Rd           |    1 
 adegenet-1.0-2/adegenet/man/gstat.randtest.Rd   |    1 
 adegenet-1.0-2/adegenet/man/import.Rd           |    7 ++-
 adegenet-1.0-2/adegenet/man/makefreq.Rd         |    7 ++-
 adegenet-1.0-2/adegenet/man/microbov.Rd         |    1 
 adegenet-1.0-2/adegenet/man/monmonier.Rd        |   46 +++++++++++++++++++-----
 adegenet-1.0-2/adegenet/man/nancycats.Rd        |   13 +-----
 adegenet-1.0-2/adegenet/man/sim2pop.Rd          |only
 25 files changed, 117 insertions(+), 62 deletions(-)

 colorRamps-1.0/colorRamps/man/purple2green.Rd       |only
 colorRamps-2.0/colorRamps/DESCRIPTION               |   10 -
 colorRamps-2.0/colorRamps/R/colorRamps.R            |  112 ++++++++++++--------
 colorRamps-2.0/colorRamps/man/blue2yellow.Rd        |only
 colorRamps-2.0/colorRamps/man/colorRamps-package.Rd |   20 ++-
 colorRamps-2.0/colorRamps/man/matlab.like.Rd        |only
 colorRamps-2.0/colorRamps/man/rgb.tables.Rd         |only
 7 files changed, 90 insertions(+), 52 deletions(-)