CRANberries

Wed, 26 Sep 2007

Package snow updated to version 0.2-9 with previous version 0.2-3 dated 2007-04-18
Diff between snow versions 0.2-3 dated 2007-04-18 and 0.2-9 dated 2007-09-26

 DESCRIPTION           |    6 ++--
 R/mpi.R               |   14 +++++++--
 R/pvm.R               |    2 -
 R/snow.R              |   71 ++++++++++++++++++++++++++++++++++++++++++++------
 R/sock.R              |   24 +++++++++++-----
 README                |   14 ++++-----
 inst/RMPISNOW         |   32 ++++++++++++++++++++--
 inst/RMPISNOWprofile  |    1 
 man/snow-cluster.Rd   |   10 +++++++
 man/snow-internal.Rd  |    7 ++++
 man/snow-startstop.Rd |   13 ++++++---
 11 files changed, 156 insertions(+), 38 deletions(-)

More information about snow at CRAN
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Package modeltools updated to version 0.2-14 with previous version 0.2-13 dated 2007-09-11
Diff between modeltools versions 0.2-13 dated 2007-09-11 and 0.2-14 dated 2007-09-26

 CHANGES      |    6 ++++++
 DESCRIPTION  |    6 +++---
 R/Methods.R  |   10 ++++------
 inst/CHANGES |    6 ++++++
 4 files changed, 19 insertions(+), 9 deletions(-)

More information about modeltools at CRAN
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Package lme4 updated to version 0.99875-8 with previous version 0.99875-7 dated 2007-08-04
Diff between lme4 versions 0.99875-7 dated 2007-08-04 and 0.99875-8 dated 2007-09-26

 ChangeLog        |    7 +++++++
 DESCRIPTION      |    8 ++++----
 R/lmer.R         |    2 +-
 src/lme4_utils.h |   10 ++++++++++
 4 files changed, 22 insertions(+), 5 deletions(-)

More information about lme4 at CRAN
Permanent link

Package ade4 updated to version 1.4-4 with previous version 1.4-3 dated 2007-04-16
Diff between ade4 versions 1.4-3 dated 2007-04-16 and 1.4-4 dated 2007-09-26

 ade4-1.4-3/ade4/R/within.pca.R             |only
 ade4-1.4-3/ade4/man/within.pca.Rd          |only
 ade4-1.4-4/ade4/ChangeLog                  |  246 +++++++++++++++++++++++++++++
 ade4-1.4-4/ade4/DESCRIPTION                |   10 -
 ade4-1.4-4/ade4/INDEX                      |  110 +++++-------
 ade4-1.4-4/ade4/R/PI2newick.R              |    5 
 ade4-1.4-4/ade4/R/RV.rtest.R               |    2 
 ade4-1.4-4/ade4/R/RVdist.randtest.R        |    1 
 ade4-1.4-4/ade4/R/amova.R                  |   11 -
 ade4-1.4-4/ade4/R/area.plot.R              |   56 +++---
 ade4-1.4-4/ade4/R/as.taxo.R                |    1 
 ade4-1.4-4/ade4/R/between.R                |    3 
 ade4-1.4-4/ade4/R/coinertia.R              |    6 
 ade4-1.4-4/ade4/R/corkdist.R               |    7 
 ade4-1.4-4/ade4/R/disc.R                   |    6 
 ade4-1.4-4/ade4/R/discrimin.R              |    3 
 ade4-1.4-4/ade4/R/discrimin.coa.R          |    2 
 ade4-1.4-4/ade4/R/dist.dudi.R              |    4 
 ade4-1.4-4/ade4/R/dist.genet.R             |    3 
 ade4-1.4-4/ade4/R/dotcircle.R              |    4 
 ade4-1.4-4/ade4/R/dudi.R                   |    4 
 ade4-1.4-4/ade4/R/dudi.coa.R               |    2 
 ade4-1.4-4/ade4/R/dudi.dec.R               |    3 
 ade4-1.4-4/ade4/R/dudi.nsc.R               |    1 
 ade4-1.4-4/ade4/R/dudi.pco.R               |    4 
 ade4-1.4-4/ade4/R/foucart.R                |    1 
 ade4-1.4-4/ade4/R/fuzzygenet.R             |    1 
 ade4-1.4-4/ade4/R/gearymoran.R             |    9 -
 ade4-1.4-4/ade4/R/genet.R                  |    2 
 ade4-1.4-4/ade4/R/gridrowcol.R             |    2 
 ade4-1.4-4/ade4/R/kplot.foucart.R          |    3 
 ade4-1.4-4/ade4/R/kplot.mfa.R              |    3 
 ade4-1.4-4/ade4/R/kplot.statis.R           |    1 
 ade4-1.4-4/ade4/R/krandtest.R              |   86 ++++++----
 ade4-1.4-4/ade4/R/ktab.R                   |   15 -
 ade4-1.4-4/ade4/R/ktab.list.dudi.R         |    1 
 ade4-1.4-4/ade4/R/ktab.match2ktabs.R       |    1 
 ade4-1.4-4/ade4/R/ktab.within.R            |    1 
 ade4-1.4-4/ade4/R/lingoes.R                |    1 
 ade4-1.4-4/ade4/R/mcoa.R                   |    7 
 ade4-1.4-4/ade4/R/mld.R                    |    1 
 ade4-1.4-4/ade4/R/multispati.R             |  112 ++++++-------
 ade4-1.4-4/ade4/R/multispati.randtest.R    |    2 
 ade4-1.4-4/ade4/R/multispati.rtest.R       |   12 -
 ade4-1.4-4/ade4/R/neig.R                   |    2 
 ade4-1.4-4/ade4/R/newick2phylog.R          |   19 --
 ade4-1.4-4/ade4/R/niche.R                  |   58 ++++++
 ade4-1.4-4/ade4/R/optimEH.R                |    1 
 ade4-1.4-4/ade4/R/orthobasis.R             |    7 
 ade4-1.4-4/ade4/R/orthogram.R              |   31 +--
 ade4-1.4-4/ade4/R/pcaiv.R                  |    2 
 ade4-1.4-4/ade4/R/phylog.R                 |    4 
 ade4-1.4-4/ade4/R/plot.phylog.R            |   35 +---
 ade4-1.4-4/ade4/R/procuste.R               |    2 
 ade4-1.4-4/ade4/R/randtest-internal.R      |   14 -
 ade4-1.4-4/ade4/R/randtest.amova.R         |    9 -
 ade4-1.4-4/ade4/R/randtest.between.R       |    4 
 ade4-1.4-4/ade4/R/rlq.R                    |   10 -
 ade4-1.4-4/ade4/R/rtest.between.R          |    1 
 ade4-1.4-4/ade4/R/s.corcircle.R            |   16 -
 ade4-1.4-4/ade4/R/s.hist.R                 |    2 
 ade4-1.4-4/ade4/R/s.image.R                |   30 +--
 ade4-1.4-4/ade4/R/s.kde2d.R                |    2 
 ade4-1.4-4/ade4/R/s.logo.R                 |    7 
 ade4-1.4-4/ade4/R/scatter.R                |    8 
 ade4-1.4-4/ade4/R/scatter.acm.R            |    4 
 ade4-1.4-4/ade4/R/sco.distri.R             |    9 -
 ade4-1.4-4/ade4/R/score.acm.R              |    2 
 ade4-1.4-4/ade4/R/score.coa.R              |   37 +++-
 ade4-1.4-4/ade4/R/score.mix.R              |    2 
 ade4-1.4-4/ade4/R/sepan.R                  |    7 
 ade4-1.4-4/ade4/R/statis.R                 |    1 
 ade4-1.4-4/ade4/R/symbols.phylog.R         |    1 
 ade4-1.4-4/ade4/R/table.cont.R             |   13 -
 ade4-1.4-4/ade4/R/table.phylog.R           |    3 
 ade4-1.4-4/ade4/R/testdim.R                |only
 ade4-1.4-4/ade4/R/uniquewt.df.R            |    1 
 ade4-1.4-4/ade4/R/variance.phylog.R        |    4 
 ade4-1.4-4/ade4/R/within.R                 |    3 
 ade4-1.4-4/ade4/R/withinpca.R              |only
 ade4-1.4-4/ade4/R/witwitsepan.R            |    2 
 ade4-1.4-4/ade4/data/vegtf.rda             |only
 ade4-1.4-4/ade4/man/PI2newick.Rd           |    3 
 ade4-1.4-4/ade4/man/RV.rtest.Rd            |    2 
 ade4-1.4-4/ade4/man/RVdist.randtest.Rd     |    2 
 ade4-1.4-4/ade4/man/aminoacyl.Rd           |    1 
 ade4-1.4-4/ade4/man/amova.Rd               |    2 
 ade4-1.4-4/ade4/man/ardeche.Rd             |    1 
 ade4-1.4-4/ade4/man/area.plot.Rd           |    2 
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 ade4-1.4-4/ade4/man/atlas.Rd               |    1 
 ade4-1.4-4/ade4/man/atya.Rd                |    1 
 ade4-1.4-4/ade4/man/avijons.Rd             |    1 
 ade4-1.4-4/ade4/man/aviurba.Rd             |    1 
 ade4-1.4-4/ade4/man/baran95.Rd             |    1 
 ade4-1.4-4/ade4/man/between.Rd             |    7 
 ade4-1.4-4/ade4/man/bicenter.wt.Rd         |    2 
 ade4-1.4-4/ade4/man/bordeaux.Rd            |    1 
 ade4-1.4-4/ade4/man/buech.Rd               |    1 
 ade4-1.4-4/ade4/man/cailliez.Rd            |    3 
 ade4-1.4-4/ade4/man/carni70.Rd             |    1 
 ade4-1.4-4/ade4/man/casitas.Rd             |    1 
 ade4-1.4-4/ade4/man/cca.Rd                 |    5 
 ade4-1.4-4/ade4/man/chatcat.Rd             |    1 
 ade4-1.4-4/ade4/man/chats.Rd               |    1 
 ade4-1.4-4/ade4/man/clementines.Rd         |    1 
 ade4-1.4-4/ade4/man/coinertia.Rd           |    9 -
 ade4-1.4-4/ade4/man/corkdist.Rd            |    5 
 ade4-1.4-4/ade4/man/discrimin.Rd           |    6 
 ade4-1.4-4/ade4/man/discrimin.coa.Rd       |    2 
 ade4-1.4-4/ade4/man/dist.binary.Rd         |    3 
 ade4-1.4-4/ade4/man/dist.dudi.Rd           |    3 
 ade4-1.4-4/ade4/man/dist.genet.Rd          |    3 
 ade4-1.4-4/ade4/man/dist.neig.Rd           |    3 
 ade4-1.4-4/ade4/man/dist.prop.Rd           |    3 
 ade4-1.4-4/ade4/man/dist.quant.Rd          |    3 
 ade4-1.4-4/ade4/man/divcmax.Rd             |    1 
 ade4-1.4-4/ade4/man/dotchart.phylog.Rd     |    3 
 ade4-1.4-4/ade4/man/dotcircle.Rd           |    2 
 ade4-1.4-4/ade4/man/doubs.Rd               |    1 
 ade4-1.4-4/ade4/man/dpcoa.Rd               |    6 
 ade4-1.4-4/ade4/man/dudi.Rd                |    6 
 ade4-1.4-4/ade4/man/dudi.acm.Rd            |    4 
 ade4-1.4-4/ade4/man/dudi.coa.Rd            |    3 
 ade4-1.4-4/ade4/man/dudi.dec.Rd            |    3 
 ade4-1.4-4/ade4/man/dudi.fca.Rd            |    3 
 ade4-1.4-4/ade4/man/dudi.hillsmith.Rd      |    4 
 ade4-1.4-4/ade4/man/dudi.mix.Rd            |    2 
 ade4-1.4-4/ade4/man/dudi.nsc.Rd            |    2 
 ade4-1.4-4/ade4/man/dudi.pca.Rd            |    2 
 ade4-1.4-4/ade4/man/dudi.pco.Rd            |    4 
 ade4-1.4-4/ade4/man/dunedata.Rd            |    6 
 ade4-1.4-4/ade4/man/elec88.Rd              |    2 
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 ade4-1.4-4/ade4/man/euro123.Rd             |    1 
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 ade4-1.4-4/ade4/man/fruits.Rd              |    1 
 ade4-1.4-4/ade4/man/fuzzygenet.Rd          |    2 
 ade4-1.4-4/ade4/man/gearymoran.Rd          |    7 
 ade4-1.4-4/ade4/man/genet.Rd               |    2 
 ade4-1.4-4/ade4/man/granulo.Rd             |    1 
 ade4-1.4-4/ade4/man/gridrowcol.Rd          |    3 
 ade4-1.4-4/ade4/man/ichtyo.Rd              |    1 
 ade4-1.4-4/ade4/man/inertia.dudi.Rd        |    3 
 ade4-1.4-4/ade4/man/is.euclid.Rd           |    5 
 ade4-1.4-4/ade4/man/julliot.Rd             |    1 
 ade4-1.4-4/ade4/man/jv73.Rd                |    1 
 ade4-1.4-4/ade4/man/kdist.Rd               |    2 
 ade4-1.4-4/ade4/man/kdist2ktab.Rd          |    2 
 ade4-1.4-4/ade4/man/kdisteuclid.Rd         |    3 
 ade4-1.4-4/ade4/man/kplot.foucart.Rd       |    4 
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 ade4-1.4-4/ade4/man/kplot.statis.Rd        |    4 
 ade4-1.4-4/ade4/man/krandtest.Rd           |   25 +-
 ade4-1.4-4/ade4/man/ktab.Rd                |   14 -
 ade4-1.4-4/ade4/man/ktab.data.frame.Rd     |    2 
 ade4-1.4-4/ade4/man/ktab.list.df.Rd        |    2 
 ade4-1.4-4/ade4/man/ktab.list.dudi.Rd      |    2 
 ade4-1.4-4/ade4/man/ktab.match2ktabs.Rd    |    3 
 ade4-1.4-4/ade4/man/ktab.within.Rd         |    2 
 ade4-1.4-4/ade4/man/lascaux.Rd             |    1 
 ade4-1.4-4/ade4/man/lingoes.Rd             |    3 
 ade4-1.4-4/ade4/man/macon.Rd               |    1 
 ade4-1.4-4/ade4/man/mafragh.Rd             |    1 
 ade4-1.4-4/ade4/man/mantel.rtest.Rd        |    3 
 ade4-1.4-4/ade4/man/mariages.Rd            |    1 
 ade4-1.4-4/ade4/man/mcoa.Rd                |    9 -
 ade4-1.4-4/ade4/man/meau.Rd                |    1 
 ade4-1.4-4/ade4/man/meaudret.Rd            |    1 
 ade4-1.4-4/ade4/man/mfa.Rd                 |    9 -
 ade4-1.4-4/ade4/man/microsatt.Rd           |    1 
 ade4-1.4-4/ade4/man/mjrochet.Rd            |    1 
 ade4-1.4-4/ade4/man/mld.Rd                 |    1 
 ade4-1.4-4/ade4/man/mollusc.Rd             |    1 
 ade4-1.4-4/ade4/man/monde84.Rd             |    1 
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 ade4-1.4-4/ade4/man/multispati.randtest.Rd |    3 
 ade4-1.4-4/ade4/man/multispati.rtest.Rd    |    3 
 ade4-1.4-4/ade4/man/neig.Rd                |    6 
 ade4-1.4-4/ade4/man/newick.eg.Rd           |    1 
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 ade4-1.4-4/ade4/man/ours.Rd                |    1 
 ade4-1.4-4/ade4/man/palm.Rd                |    1 
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 ade4-1.4-4/ade4/man/pcoscaled.Rd           |    2 
 ade4-1.4-4/ade4/man/phylog.Rd              |    5 
 ade4-1.4-4/ade4/man/plot.phylog.Rd         |    5 
 ade4-1.4-4/ade4/man/procuste.Rd            |    7 
 ade4-1.4-4/ade4/man/procuste.rtest.Rd      |    2 
 ade4-1.4-4/ade4/man/pta.Rd                 |    7 
 ade4-1.4-4/ade4/man/quasieuclid.Rd         |    3 
 ade4-1.4-4/ade4/man/randtest.Rd            |    4 
 ade4-1.4-4/ade4/man/randtest.amova.Rd      |    2 
 ade4-1.4-4/ade4/man/randtest.between.Rd    |    2 
 ade4-1.4-4/ade4/man/randtest.coinertia.Rd  |    2 
 ade4-1.4-4/ade4/man/randtest.discrimin.Rd  |    2 
 ade4-1.4-4/ade4/man/reconst.Rd             |    6 
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 ade4-1.4-4/ade4/man/rpjdl.Rd               |    1 
 ade4-1.4-4/ade4/man/rtest.Rd               |    6 
 ade4-1.4-4/ade4/man/rtest.between.Rd       |    4 
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 ade4-1.4-4/ade4/man/s.arrow.Rd             |    2 
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 ade4-1.4-4/ade4/man/s.corcircle.Rd         |    2 
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 ade4-1.4-4/ade4/man/sco.quant.Rd           |    2 
 ade4-1.4-4/ade4/man/score.Rd               |    2 
 ade4-1.4-4/ade4/man/score.acm.Rd           |    4 
 ade4-1.4-4/ade4/man/score.coa.Rd           |   12 +
 ade4-1.4-4/ade4/man/score.mix.Rd           |    4 
 ade4-1.4-4/ade4/man/score.pca.Rd           |    4 
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 272 files changed, 1019 insertions(+), 684 deletions(-)

More information about ade4 at CRAN
Permanent link

New package NestedCohort with initial version 1.0-1

Package: NestedCohort
Version: 1.0-1
Date: 2007-09-01
Title: Survival Analysis for Cohorts with Missing Covariate Information
Author: Hormuzd A. Katki 
Maintainer: Hormuzd A. Katki 
Depends: R (>= 2.1.1), survival, MASS
Description: Estimate hazard ratios, standardized survival and attributable risks for cohorts with missing covariates, for Cox models or Kaplan-Meier.
License: Unlimited
URL: http://dceg.cancer.gov/about/staff-bios/katki-hormuzd
Packaged: Tue Sep 25 15:36:05 2007; katkih

More information about NestedCohort at CRAN
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Package arm updated to version 1.0-33 with previous version 1.0-32 dated 2007-09-23
Diff between arm versions 1.0-32 dated 2007-09-23 and 1.0-33 dated 2007-09-26

 CHANGELOG          |   12 
 DESCRIPTION        |    6 
 R/AllGeneric.R     |   10 
 R/AllInternal.R    |   20 
 R/balanceplot.R    |   15 
 R/mcsamp.R         |    4 
 inst/doc/arm.pdf   | 2128 ++++++++++++++++++++++++++---------------------------
 man/balanceplot.Rd |    6 
 man/coefplot.Rd    |    4 
 man/display.Rd     |    3 
 man/mcsamp.Rd      |    3 
 man/sim.Rd         |    9 
 12 files changed, 1134 insertions(+), 1086 deletions(-)

More information about arm at CRAN
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