VGAM-0.7-3/VGAM/man/cexpon.Rd            |only
 VGAM-0.7-4/VGAM/DESCRIPTION              |    6 
 VGAM-0.7-4/VGAM/NAMESPACE                |   14 
 VGAM-0.7-4/VGAM/NEWS                     |   38 +
 VGAM-0.7-4/VGAM/R/cao.fit.q              |    6 
 VGAM-0.7-4/VGAM/R/cqo.fit.q              |    3 
 VGAM-0.7-4/VGAM/R/family.basics.q        |    5 
 VGAM-0.7-4/VGAM/R/family.binomial.q      |  208 +++++++--
 VGAM-0.7-4/VGAM/R/family.bivariate.q     |    2 
 VGAM-0.7-4/VGAM/R/family.censored.q      |  384 ++++++++++++----
 VGAM-0.7-4/VGAM/R/family.extremes.q      |  187 ++++++--
 VGAM-0.7-4/VGAM/R/family.functions.q     |    2 
 VGAM-0.7-4/VGAM/R/family.glmgam.q        |  223 +++++++++
 VGAM-0.7-4/VGAM/R/family.mixture.q       |  175 +++++++
 VGAM-0.7-4/VGAM/R/family.normal.q        |    7 
 VGAM-0.7-4/VGAM/R/family.positive.q      |    8 
 VGAM-0.7-4/VGAM/R/family.qreg.q          |  209 +++++++++
 VGAM-0.7-4/VGAM/R/family.rrr.q           |   10 
 VGAM-0.7-4/VGAM/R/family.survival.q      |  121 +----
 VGAM-0.7-4/VGAM/R/family.ts.q            |    2 
 VGAM-0.7-4/VGAM/R/family.univariate.q    |  711 +++++++++++++++++++++++--------
 VGAM-0.7-4/VGAM/R/family.zeroinf.q       |   48 +-
 VGAM-0.7-4/VGAM/R/plot.vglm.q            |   24 -
 VGAM-0.7-4/VGAM/R/predict.vglm.q         |    2 
 VGAM-0.7-4/VGAM/R/print.summary.others.q |    5 
 VGAM-0.7-4/VGAM/R/smart.R                |  445 -------------------
 VGAM-0.7-4/VGAM/R/summary.vglm.q         |    4 
 VGAM-0.7-4/VGAM/R/vgam.R                 |    5 
 VGAM-0.7-4/VGAM/R/vsmooth.spline.q       |    7 
 VGAM-0.7-4/VGAM/data/aml.R               |only
 VGAM-0.7-4/VGAM/data/toxop.R             |only
 VGAM-0.7-4/VGAM/man/Links.Rd             |    3 
 VGAM-0.7-4/VGAM/man/Surv.Rd              |only
 VGAM-0.7-4/VGAM/man/SurvS4-class.Rd      |only
 VGAM-0.7-4/VGAM/man/VGAM-package.Rd      |only
 VGAM-0.7-4/VGAM/man/acat.Rd              |    3 
 VGAM-0.7-4/VGAM/man/alsqreg.Rd           |only
 VGAM-0.7-4/VGAM/man/aml.Rd               |only
 VGAM-0.7-4/VGAM/man/betabinomial.Rd      |   17 
 VGAM-0.7-4/VGAM/man/binomialff.Rd        |    2 
 VGAM-0.7-4/VGAM/man/bisa.Rd              |   65 +-
 VGAM-0.7-4/VGAM/man/cao.Rd               |    6 
 VGAM-0.7-4/VGAM/man/cratio.Rd            |    3 
 VGAM-0.7-4/VGAM/man/cumulative.Rd        |    9 
 VGAM-0.7-4/VGAM/man/dexpbinomial.Rd      |only
 VGAM-0.7-4/VGAM/man/enzyme.Rd            |    2 
 VGAM-0.7-4/VGAM/man/expexp1.Rd           |    1 
 VGAM-0.7-4/VGAM/man/exponential.Rd       |    2 
 VGAM-0.7-4/VGAM/man/fitted.vlm.Rd        |    8 
 VGAM-0.7-4/VGAM/man/gev.Rd               |   23 -
 VGAM-0.7-4/VGAM/man/gpd.Rd               |    4 
 VGAM-0.7-4/VGAM/man/grc.Rd               |    4 
 VGAM-0.7-4/VGAM/man/gumbel.Rd            |    4 
 VGAM-0.7-4/VGAM/man/hspider.Rd           |   15 
 VGAM-0.7-4/VGAM/man/hunua.Rd             |    6 
 VGAM-0.7-4/VGAM/man/laplace.Rd           |only
 VGAM-0.7-4/VGAM/man/laplaceUC.Rd         |   36 -
 VGAM-0.7-4/VGAM/man/lms.bcg.Rd           |    3 
 VGAM-0.7-4/VGAM/man/lms.bcn.Rd           |    3 
 VGAM-0.7-4/VGAM/man/lms.yjn.Rd           |    7 
 VGAM-0.7-4/VGAM/man/logit.Rd             |    1 
 VGAM-0.7-4/VGAM/man/loglinb2.Rd          |    2 
 VGAM-0.7-4/VGAM/man/loglinb3.Rd          |    2 
 VGAM-0.7-4/VGAM/man/maxwell.Rd           |    6 
 VGAM-0.7-4/VGAM/man/nakagami.Rd          |    2 
 VGAM-0.7-4/VGAM/man/negbinomial.Rd       |   18 
 VGAM-0.7-4/VGAM/man/ordpoisson.Rd        |    3 
 VGAM-0.7-4/VGAM/man/pareto1.Rd           |   14 
 VGAM-0.7-4/VGAM/man/poissonff.Rd         |    3 
 VGAM-0.7-4/VGAM/man/poissonp.Rd          |only
 VGAM-0.7-4/VGAM/man/quasibinomialff.Rd   |    6 
 VGAM-0.7-4/VGAM/man/rayleigh.Rd          |   23 -
 VGAM-0.7-4/VGAM/man/ruge.Rd              |    2 
 VGAM-0.7-4/VGAM/man/s.Rd                 |    2 
 VGAM-0.7-4/VGAM/man/seq2binomial.Rd      |only
 VGAM-0.7-4/VGAM/man/simplex.Rd           |    3 
 VGAM-0.7-4/VGAM/man/skewnormal1.Rd       |    4 
 VGAM-0.7-4/VGAM/man/sratio.Rd            |    3 
 VGAM-0.7-4/VGAM/man/tobit.Rd             |    2 
 VGAM-0.7-4/VGAM/man/toxop.Rd             |only
 VGAM-0.7-4/VGAM/man/tparetoUC.Rd         |    2 
 VGAM-0.7-4/VGAM/man/triangle.Rd          |only
 VGAM-0.7-4/VGAM/man/triangleUC.Rd        |only
 VGAM-0.7-4/VGAM/man/vgam-class.Rd        |    2 
 VGAM-0.7-4/VGAM/man/vgam.Rd              |    5 
 VGAM-0.7-4/VGAM/man/waitakere.Rd         |    4 
 VGAM-0.7-4/VGAM/man/weibull.Rd           |   74 +--
 VGAM-0.7-4/VGAM/man/zetaff.Rd            |    2 
 VGAM-0.7-4/VGAM/man/zipf.Rd              |    2 
 VGAM-0.7-4/VGAM/man/zipoisson.Rd         |   31 +
 VGAM-0.7-4/VGAM/src/muxr.c               |    7 
 VGAM-0.7-4/VGAM/src/vcall2.f             |   13 
 VGAM-0.7-4/VGAM/src/vmux.f               |    2 
 93 files changed, 2201 insertions(+), 1126 deletions(-)

 DESCRIPTION                   |    4 ++--
 man/landscape.democol.Rd      |    2 +-
 man/landscape.locus.Rd        |    2 +-
 man/landscape.locus.states.Rd |    2 +-
 man/landscape.locusvec.Rd     |    2 +-
 man/landscape.ploidy.Rd       |    2 +-
 man/landscape.populations.Rd  |    2 +-
 man/landscape.states.Rd       |    2 +-
 src/rmetasim.cc               |    5 +++--
 9 files changed, 12 insertions(+), 11 deletions(-)

 DESCRIPTION            |    8 ++++----
 inst/doc/ChangeLog.pdf |binary
 2 files changed, 4 insertions(+), 4 deletions(-)

 DESCRIPTION            |   10 -
 NAMESPACE              |    7 +
 R/DIC.R                |   16 +-
 R/control.R            |   57 ++++-----
 R/corStruct.R          |    6 -
 R/engine.R             |  290 ++++++++++++++++++++++++-------------------------
 R/georamps.R           |   77 ++++++-------
 R/graphics.R           |only
 R/mpdensity.R          |   43 +++----
 R/mpdpred.R            |  239 ++++++++++++++++++++--------------------
 R/predict.R            |   48 +++++---
 R/utils.R              |  115 +++++++++++++++----
 inst/CITATION          |    4 
 man/DIC.Rd             |    9 -
 man/NURE.Rd            |    2 
 man/corRExp.Rd         |    4 
 man/corRExp2.Rd        |    4 
 man/corRExpwr.Rd       |    4 
 man/corRExpwr2.Rd      |    4 
 man/corRExpwr2Dt.Rd    |    4 
 man/corRGaus.Rd        |    4 
 man/corRLin.Rd         |    4 
 man/corRMatern.Rd      |    4 
 man/corRRatio.Rd       |    4 
 man/corRSpher.Rd       |    4 
 man/corRWave.Rd        |    4 
 man/expand.chain.Rd    |only
 man/genUSStateGrid.Rd  |   18 ++-
 man/genUSStateSites.Rd |   13 +-
 man/georamps.Rd        |   35 +++--
 man/param.Rd           |   11 -
 man/plot.Rd            |only
 man/predict.ramps.Rd   |   36 ++++--
 man/ramps.control.Rd   |   21 +--
 man/summary.ramps.Rd   |    7 -
 man/window.Rd          |only
 36 files changed, 608 insertions(+), 500 deletions(-)

 pgirmess-1.3.3/pgirmess/README           |only
 pgirmess-1.3.4/pgirmess/DESCRIPTION      |    6 +++---
 pgirmess-1.3.4/pgirmess/R/correlog.R     |    2 +-
 pgirmess-1.3.4/pgirmess/R/polycirc2.R    |only
 pgirmess-1.3.4/pgirmess/man/polycirc.Rd  |    4 ++--
 pgirmess-1.3.4/pgirmess/man/polycirc2.Rd |only
 pgirmess-1.3.4/pgirmess/man/preybiom.Rd  |    9 ++-------
 7 files changed, 8 insertions(+), 13 deletions(-)

 CHANGELOG                       |    4 ++--
 DESCRIPTION                     |    4 ++--
 R/makealleles.R                 |   31 ++++++++++++++++++-------------
 R/new.locus.R                   |    6 +++---
 R/simcoal.R                     |only
 man/landscape.democol.Rd        |    2 +-
 man/landscape.genepop.output.Rd |    6 +-----
 man/landscape.locus.Rd          |    2 +-
 man/landscape.locus.states.Rd   |    2 +-
 man/landscape.locusvec.Rd       |    2 +-
 man/landscape.ploidy.Rd         |    2 +-
 man/landscape.populations.Rd    |    2 +-
 man/landscape.states.Rd         |    2 +-
 src/kernelPop.cc                |   22 +++++-----------------
 14 files changed, 38 insertions(+), 49 deletions(-)

 DAAGxtras-0.6-7/DAAGxtras/hotspots.RData     |only
 DAAGxtras-0.6-7/DAAGxtras/snap.txt           |only
 DAAGxtras-0.6-8/DAAGxtras/DAAGxtras.Rcheck   |only
 DAAGxtras-0.6-8/DAAGxtras/DESCRIPTION        |    4 ++--
 DAAGxtras-0.6-8/DAAGxtras/data/nihills.RData |binary
 DAAGxtras-0.6-8/DAAGxtras/man/nihills.Rd     |    4 ++--
 6 files changed, 4 insertions(+), 4 deletions(-)

Package: hints
Type: Package
Title: Provide hints on what to do next
Version: 1.0
Date: 2007-09-12
Author: Hadley Wickham , Sanford Weisberg 
Maintainer: Hadley Wickham 
Suggets: xtable 
Description: Gives hints on what functions you might want to apply to an object you have created.
URL: http://hints.googlecode.com
License: GPL version 2 or newer
Packaged: Sun Sep 30 18:17:28 2007; hadley

 Changes                      |   26 +++++
 DESCRIPTION                  |    7 -
 INSTALL                      |    2 
 NAMESPACE                    |    9 +
 R/accessors.R                |   11 ++
 R/createNode.R               |   22 ++++
 R/hashTree.R                 |    2 
 R/xmlNodes.R                 |  217 +++++++++++++++++++++++++++++++++++--------
 R/xmlTree.R                  |  173 +++++++++++++++++++++++++++-------
 inst/Docs/FAQ.html           |   82 ++++++++++++++++
 inst/Docs/MathML.pdf         |binary
 inst/Docs/Outline.pdf        |binary
 inst/Docs/Tour.pdf           |binary
 inst/Docs/description.pdf    |binary
 inst/Docs/manual.pdf         |binary
 inst/examples/createTree.R   |    6 -
 inst/examples/createTree1.R  |    5 
 inst/examples/namespaces.S   |    5 
 inst/examples/pmml.R         |    5 
 inst/examples/trademe_cars.R |only
 inst/examples/wordML.R       |   10 -
 man/XMLNode-class.Rd         |    1 
 man/addChildren.Rd           |   17 ++-
 man/newXMLDoc.Rd             |  125 +++++++++++++++++++++---
 man/toHTML.Rd                |   10 +
 man/xmlNamespace.Rd          |    1 
 man/xmlNode.Rd               |    1 
 man/xmlRoot.Rd               |    2 
 man/xmlTree.Rd               |   55 +++++++++-
 src/DocParse.c               |    3 
 src/RUtils.c                 |    2 
 src/Utils.h                  |    2 
 src/XMLTree.c                |   30 ++++-
 33 files changed, 707 insertions(+), 124 deletions(-)