DESCRIPTION                    |    6 +++---
 INSTALL                        |    2 +-
 R/xmlTreeParse.R               |    2 ++
 inst/Docs/FAQ.html             |   25 +++++++++++++++++++++++--
 inst/exampleData/include.xml   |only
 inst/exampleData/rxinclude.xml |only
 src/DocParse.c                 |   10 +++++-----
 src/HTMLParse.c                |    8 ++++----
 src/XMLTree.c                  |    6 +++++-
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 10 files changed, 46 insertions(+), 17 deletions(-)

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 Rmpi-0.5-4/Rmpi/ChangeLog                      |   24 
 Rmpi-0.5-4/Rmpi/DESCRIPTION                    |    6 
 Rmpi-0.5-4/Rmpi/R/Rcoll.R                      |   20 
 Rmpi-0.5-4/Rmpi/R/Rmpi.R                       |    3 
 Rmpi-0.5-4/Rmpi/R/zzz.R                        |    4 
 Rmpi-0.5-4/Rmpi/configure                      | 3856 ++++++++++++++-----------
 Rmpi-0.5-4/Rmpi/configure.ac                   |only
 Rmpi-0.5-4/Rmpi/demo/masterslavePI.R           |    3 
 Rmpi-0.5-4/Rmpi/inst/Rslaves.sh                |    2 
 Rmpi-0.5-4/Rmpi/inst/slavedaemon.R             |   36 
 Rmpi-0.5-4/Rmpi/man/internal.Rd                |   12 
 Rmpi-0.5-4/Rmpi/man/mpi.comm.set.errhandler.Rd |    6 
 Rmpi-0.5-4/Rmpi/src/Rmpi.c                     |  331 +-
 Rmpi-0.5-4/Rmpi/src/Rmpi.h                     |   10 
 Rmpi-0.5-4/Rmpi/src/conversion.c               |    3 
 Rmpi-0.5-4/Rmpi/src/internal.c                 |   41 
 18 files changed, 2643 insertions(+), 1714 deletions(-)

 DESCRIPTION  |    4 ++--
 R/LogicReg.R |    3 ++-
 2 files changed, 4 insertions(+), 3 deletions(-)

 ChangeLog                  |   12 ++++
 DESCRIPTION                |    6 +-
 configure                  |  116 +++++++++++++++++++++++++++++++++++++++++----
 configure.in               |    7 ++
 configure.in.in            |    5 +
 configure.win              |   19 ++++++-
 man/alpha.centrality.Rd    |    1 
 man/cliques.Rd             |    1 
 man/spinglass.community.Rd |    1 
 man/walktrap.community.Rd  |    1 
 src/Makevars.win           |    8 +--
 src/NetDataTypes.cpp       |    2 
 src/NetDataTypes.h         |    2 
 src/config.h.in            |    2 
 src/fast_community.c       |    1 
 src/foreign-graphml.c      |    8 +--
 src/games.c                |   24 ++++-----
 src/iterators.c            |    1 
 src/random.c               |   30 ++++-------
 src/rinterface.c           |    6 +-
 20 files changed, 187 insertions(+), 66 deletions(-)

 amap-0.8-1/amap/x.log              |only
 amap-0.8-2/amap/Changes            |    6 
 amap-0.8-2/amap/DESCRIPTION        |    6 
 amap-0.8-2/amap/R/Kmeans.R         |    2 
 amap-0.8-2/amap/R/acp.R            |    7 
 amap-0.8-2/amap/R/dist.R           |    2 
 amap-0.8-2/amap/R/hcluster.R       |    2 
 amap-0.8-2/amap/inst/doc/amap.pdf  |binary
 amap-0.8-2/amap/man/Kmeans.Rd      |    2 
 amap-0.8-2/amap/man/afc.Rd         |    3 
 amap-0.8-2/amap/man/dist.Rd        |   12 +
 amap-0.8-2/amap/man/hcluster.Rd    |    2 
 amap-0.8-2/amap/src/distance_T.cpp |  344 +++++++++++++++++++++++++++++++------
 amap-0.8-2/amap/src/distance_T.h   |  238 ++++++++++++++++++++++++-
 amap-0.8-2/amap/src/kmeans.cpp     |   32 ++-
 15 files changed, 566 insertions(+), 92 deletions(-)

 DESCRIPTION               |   10 +++++-----
 R/D.H.R                   |    3 +++
 R/MLE.R                   |   11 ++++++++---
 R/ShowModels.R            |    4 ++++
 R/auxiliary.R             |    4 ++--
 R/getNset.R               |    9 +++++----
 R/modelling.R             |    3 ++-
 R/rf.R                    |    4 ++--
 man/CheckAndComplete.Rd   |   25 ++++++++++++-------------
 man/CondSimu.Rd           |    4 ++--
 man/CovarianceFct.Rd      |    4 ++--
 man/Dev.Rd                |    4 ++--
 man/EmpiricalVariogram.Rd |    4 ++--
 man/GaussRF.Rd            |    4 ++--
 man/GetPracticalRange.Rd  |    4 ++--
 man/GetRegisterInfo.Rd    |    4 ++--
 man/Kriging.Rd            |    4 ++--
 man/Locator.Rd            |    4 ++--
 man/MaxStableRF.Rd        |    4 ++--
 man/RFMethods.Rd          |    4 ++--
 man/RFparameters.Rd       |    4 ++--
 man/RandomFields.Rd       |    4 ++--
 man/Readline.Rd           |    4 ++--
 man/Registers.Rd          |    4 ++--
 man/ShowModels.Rd         |    4 ++--
 man/SimulateRF.Rd         |    4 ++--
 man/auxiliary.fcts.Rd     |    4 ++--
 man/eval.parameters.Rd    |    5 ++---
 man/fileexists.Rd         |    4 ++--
 man/fitvario.Rd           |    4 ++--
 man/fractal.Rd            |    4 ++--
 man/getactions.Rd         |    4 ++--
 man/hostname.Rd           |    4 ++--
 man/hurst.Rd              |    4 ++--
 man/parameter.range.Rd    |    4 ++--
 man/parampositions.Rd     |    4 ++--
 man/regression.Rd         |    4 ++--
 man/sleep.Rd              |    4 ++--
 man/useraction.Rd         |    4 ++--
 man/userinput.Rd          |    4 ++--
 src/D.H.cc                |    2 +-
 src/Hyperfcts.cc          |    2 +-
 src/MPP.cc                |    2 +-
 src/MPPFcts.cc            |    2 +-
 src/RFCovFcts.cc          |    2 +-
 src/RFcircembed.cc        |    6 +++---
 src/RFdirect.cc           |    2 +-
 src/RFempvario.cc         |    2 +-
 src/RFgetNset.cc          |    2 +-
 src/RFhyperplan.cc        |    2 +-
 src/RFinitNerror.cc       |    2 +-
 src/RFnugget.cc           |    2 +-
 src/RFother.cc            |    2 +-
 src/RFsimu.cc             |   12 +++++++-----
 src/RFspectral.cc         |    2 +-
 src/RFtbm.cc              |   12 ++++++++++--
 src/Xempvario.cc          |    2 +-
 src/auxiliary.cc          |    2 +-
 src/extremes.cc           |   10 ++++++++--
 src/modelling.cc          |    2 +-
 src/win_linux_aux.cc      |    2 +-
 tests/RFtest.Covariance.R |    7 +++++--
 62 files changed, 155 insertions(+), 124 deletions(-)

 ChangeLog        |only
 DESCRIPTION      |   17 ++++++-------
 data/AirQual.rda |binary
 man/AirQual.Rd   |   71 +++++++++++++++++++++++++++++++++++++++++++++++--------
 4 files changed, 70 insertions(+), 18 deletions(-)

 DESCRIPTION     |   15 +++++++--------
 INDEX           |    7 ++++++-
 R/Oarray.R      |   12 ++++++++++--
 man/Oarray.Rd   |   54 +++++++++++++++++++++++-------------------------------
 man/internal.Rd |only
 5 files changed, 46 insertions(+), 42 deletions(-)

 IDPmisc-0.9.3/IDPmisc/R/plot.rose.R          |only
 IDPmisc-0.9.3/IDPmisc/man/IDPmisc.Rd         |only
 IDPmisc-0.9.5/IDPmisc/ChangeLog              |   25 +-
 IDPmisc-0.9.5/IDPmisc/DESCRIPTION            |   18 -
 IDPmisc-0.9.5/IDPmisc/R/grid.control.R       |    4 
 IDPmisc-0.9.5/IDPmisc/R/longts.plot.R        |    2 
 IDPmisc-0.9.5/IDPmisc/R/plot.onepage.R       |    4 
 IDPmisc-0.9.5/IDPmisc/R/rose.R               |  309 ++++++++++++++++++++++++++-
 IDPmisc-0.9.5/IDPmisc/R/title.control.R      |    6 
 IDPmisc-0.9.5/IDPmisc/man/Arrows.Rd          |    2 
 IDPmisc-0.9.5/IDPmisc/man/IDPmisc-package.Rd |only
 IDPmisc-0.9.5/IDPmisc/man/longts.plot.Rd     |    6 
 IDPmisc-0.9.5/IDPmisc/man/plot.rose.Rd       |   19 -
 IDPmisc-0.9.5/IDPmisc/man/title.control.Rd   |    2 
 14 files changed, 352 insertions(+), 45 deletions(-)

 HardyWeinberg-1.0/HardyWeinberg/Read-and-delete-me             |only
 HardyWeinberg-1.1/HardyWeinberg/DESCRIPTION                    |    4 ++--
 HardyWeinberg-1.1/HardyWeinberg/inst/doc/HardyWeinberg-008.eps |only
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 11 files changed, 2 insertions(+), 2 deletions(-)

 DESCRIPTION                  |   26 ++++-----
 HISTORY                      |    6 --
 INDEX                        |  118 +++++++++++++++++++++----------------------
 NAMESPACE                    |    3 +
 R/dynamicGraph-internal.R    |    2 
 R/dynamicGraphMain.R         |   32 ++++++-----
 R/setBlocks.R                |    2 
 R/simpleGraphToGraph.R       |    3 -
 demo/Circle.newEdge.R        |    3 -
 inst/demo.source/usermenus.R |    2 
 man/dg.graphedges-class.Rd   |    2 
 man/validEdgeClasses.Rd      |    3 -
 12 files changed, 102 insertions(+), 100 deletions(-)

 DESCRIPTION      |    4 ++--
 R/codetools.R    |    2 +-
 man/codetools.Rd |    7 +------
 3 files changed, 4 insertions(+), 9 deletions(-)

 DESCRIPTION            |   10 +++----
 R/anova.ccabyterm.R    |    5 ++-
 R/bioenv.default.R     |    3 ++
 R/cIndexKM.R           |    9 +------
 R/cascadeKM.R          |    1 
 R/metaMDSiter.R        |    3 +-
 R/ordispantree.R       |    2 -
 R/scores.default.R     |    4 ++-
 R/summary.cca.R        |    9 ++++++-
 R/taxa2dist.R          |   14 +++++++----
 R/taxondive.R          |   62 +++++++++++++++++++++++++++++++++----------------
 R/vegandocs.R          |    3 --
 inst/ChangeLog         |   32 +++++++++++++++++++++++++
 inst/doc/FAQ-vegan.pdf |binary
 inst/doc/vegan-FAQ.pdf |binary
 inst/doc/vegan-FAQ.tex |   12 ++++-----
 man/cascadeKM.Rd       |    4 ---
 man/cca.object.Rd      |    3 --
 man/designdist.Rd      |    1 
 man/distconnected.Rd   |    3 +-
 man/diversity.Rd       |    2 -
 man/dune.Rd            |    2 -
 man/dune.taxon.Rd      |    1 
 man/linestack.Rd       |    1 
 man/mantel.Rd          |    2 -
 man/mite.Rd            |    1 
 man/orditorp.Rd        |    1 
 man/taxondive.Rd       |   14 ++++++++---
 man/varechem.Rd        |    4 ---
 man/vegandocs.Rd       |    6 +++-
 man/wascores.Rd        |    2 -
 src/cepin.f            |   30 +++++++++++------------
 src/decorana.f         |    2 +
 src/ordering.f         |    4 +--
 34 files changed, 158 insertions(+), 94 deletions(-)

Package: TTR
Type: Package
Title: Technical Trading Rules
Version: 0.13
Date: 2007-09-27
Author: Josh Ulrich
Maintainer: Josh Ulrich 
Description: Functions and data to construct technical trading rules with R.
License: GPL version 2 or later
Packaged: Tue Oct  2 20:52:33 2007; Owner

Package: SASxport
Type: Package
Title: Read and Write SAS XPORT Files
Version: 1.1.1
Date: 2007-09-25
Description: This package provides functions for reading, listing
  the contents of, and writing SAS xport format files. 
  The functions support reading and writing of either
  individual data frames or sets of data frames.  Further,
  a mechanism has been provided for customizing how
  variables of different data types are stored. 
Author: 
  Unless otherwise noted, the contents of this package were written by
  Gregory R. Warnes , are
  Copyright (c) 2007 by Random Technologies LLC
  , and are provided under the
  terms of the GNU General Public License, version 2.0 or later. 
  --
  The files 'ieee2ibm.c' and 'ibm2ieee.c' were extracted from BRL-CAD, 
  file /brlcad/src/libbu/htond.c written by Michael John Muuss, 
  Copyright (c) 2004-2007 United States Government as represented by
  the U.S. Army Research Laboratory, and is utilized and redistributed
  under the terms of the  GNU Lesser General Public License, version 2.1.
  --
  The files 'AFirst.lib.s', 'all.is.numeric.R',
  'importConvertDateTime.R', 'in.opererator.R', 'makeNames.R', 
  'read.xport.R', and 'testDateTime.R' are copied or adapted from the
  'Hmisc' package created by Frank E. Harrell, Jr. 
  , and are utilized and redistributed under
  the terms of the GNU General Public License, version 2.0 or later. 
  --     
  The creation of this package was partially funded by Metrum Institute
  .  
Maintainer: Gregory R. Warnes 
License: GPL 2.0 or later
Depends: R (>= 2.4.0)
Imports: foreign (>= 0.8-20), chron
Enhances: foreign
URL: http://random-technologies-llc.com, http://metruminstitute.org
Packaged: Wed Oct  3 01:40:27 2007; warnes

 DESCRIPTION              |    4 ++--
 man/display.ascii.o.Rd   |    2 +-
 man/fences.Rd            |    2 +-
 man/fences.summary.Rd    |    2 +-
 man/framework.summary.Rd |    2 +-
 man/kola.c.Rd            |    4 ++--
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 7 files changed, 10 insertions(+), 10 deletions(-)

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 MCMCpack-0.9-1/MCMCpack/man/plotPostState.Rd          |only
 MCMCpack-0.9-2/MCMCpack/DESCRIPTION                   |   11 
 MCMCpack-0.9-2/MCMCpack/HISTORY                       |    8 
 MCMCpack-0.9-2/MCMCpack/NAMESPACE                     |    4 
 MCMCpack-0.9-2/MCMCpack/R/MCMCfactanal.R              |    3 
 MCMCpack-0.9-2/MCMCpack/R/MCMCirtKd.R                 |   74 +--
 MCMCpack-0.9-2/MCMCpack/R/MCMClogit.R                 |    2 
 MCMCpack-0.9-2/MCMCpack/R/MCMCmixfactanal.R           |    2 
 MCMCpack-0.9-2/MCMCpack/R/MCMCmnl.R                   |  111 +++-
 MCMCpack-0.9-2/MCMCpack/R/MCMCoprobit.R               |   67 ++
 MCMCpack-0.9-2/MCMCpack/R/MCMCpoisson.R               |    2 
 MCMCpack-0.9-2/MCMCpack/R/MCMCpoissonChangepoint.R    |  232 +++------
 MCMCpack-0.9-2/MCMCpack/R/MCMCprobit.R                |    1 
 MCMCpack-0.9-2/MCMCpack/R/MCMCregress.R               |    3 
 MCMCpack-0.9-2/MCMCpack/R/MCMCtobit.R                 |  131 ++---
 MCMCpack-0.9-2/MCMCpack/R/btsutil.R                   |  303 ++++--------
 MCMCpack-0.9-2/MCMCpack/R/zzz.R                       |    2 
 MCMCpack-0.9-2/MCMCpack/README                        |   12 
 MCMCpack-0.9-2/MCMCpack/man/MCMCdynamicEI.Rd          |    4 
 MCMCpack-0.9-2/MCMCpack/man/MCMChierEI.Rd             |    4 
 MCMCpack-0.9-2/MCMCpack/man/MCMCmnl.Rd                |   13 
 MCMCpack-0.9-2/MCMCpack/man/MCMCoprobit.Rd            |   39 +
 MCMCpack-0.9-2/MCMCpack/man/MCMCpoissonChangepoint.Rd |  261 +++++------
 MCMCpack-0.9-2/MCMCpack/man/MCMCtobit.Rd              |  318 ++++++-------
 MCMCpack-0.9-2/MCMCpack/man/dtomog.Rd                 |    3 
 MCMCpack-0.9-2/MCMCpack/man/plotChangepoint.Rd        |only
 MCMCpack-0.9-2/MCMCpack/man/plotState.Rd              |only
 MCMCpack-0.9-2/MCMCpack/man/tomog.Rd                  |    4 
 MCMCpack-0.9-2/MCMCpack/src/MCMCmnl.h                 |   29 -
 MCMCpack-0.9-2/MCMCpack/src/MCMCmnlMH.cc              |  277 +++++++----
 MCMCpack-0.9-2/MCMCpack/src/MCMCoprobit.cc            |  421 +++++++++++++-----
 MCMCpack-0.9-2/MCMCpack/src/MCMCpoissonChangepoint.cc |only
 MCMCpack-0.9-2/MCMCpack/src/Makevars                  |    3 
 MCMCpack-0.9-2/MCMCpack/src/Makevars.in               |    3 
 35 files changed, 1293 insertions(+), 1054 deletions(-)

 DESCRIPTION   |   13 ++++++-------
 R/GEV.R       |only
 R/GUMBEL.R    |only
 R/KAPPA.R     |    2 +-
 man/GEV.Rd    |only
 man/GUMBEL.Rd |only
 6 files changed, 7 insertions(+), 8 deletions(-)

 DESCRIPTION        |    6 +++---
 R/simul.R          |    4 ++--
 inst/doc/CHANGES   |   18 ++++++++++++++++++
 man/pars.limits.Rd |    3 ++-
 man/subarea.Rd     |    3 ++-
 5 files changed, 27 insertions(+), 7 deletions(-)

 DESCRIPTION              |   13 ++++++-------
 R/gen.trun.R             |    2 +-
 man/gamlss.tr.package.Rd |    4 +++-
 man/gen.trun.Rd          |    2 +-
 man/trun.Rd              |    2 +-
 man/trun.d.Rd            |   17 ++++++++---------
 man/trun.p.Rd            |    2 +-
 man/trun.q.Rd            |    2 +-
 man/trun.r.Rd            |    2 +-
 9 files changed, 23 insertions(+), 23 deletions(-)

 DESCRIPTION              |   10 +++++-----
 NAMESPACE                |    2 +-
 R/gamlssMX-10-4-07.R     |    7 ++++++-
 R/gamlssNP.R             |    2 +-
 man/MX.control.Rd        |    2 +-
 man/dMX.Rd               |    2 +-
 man/gamlss.mx.package.Rd |    2 +-
 man/gamlssMX.Rd          |    2 +-
 man/gamlssNP.Rd          |    2 +-
 9 files changed, 18 insertions(+), 13 deletions(-)

 DESCRIPTION              |   10 +++++-----
 man/NL.control.Rd        |    2 +-
 man/gamlss.nl.package.Rd |    4 ++--
 man/nl.Rd                |    2 +-
 man/nlgamlss.Rd          |    2 +-
 5 files changed, 10 insertions(+), 10 deletions(-)

 DESCRIPTION                |   12 ++--
 R/GIG.R                    |    2 
 R/SHASH.R                  |  112 +++++++++++++++++++++++++++++++++++++++++++--
 R/SICHEL.R                 |    8 +--
 data/LGAclaims.R           |only
 man/BEOI.Rd                |   16 ++----
 man/BEZI.Rd                |    5 --
 man/DEL.Rd                 |    2 
 man/EXP.Rd                 |    2 
 man/GG.Rd                  |    2 
 man/GIG.Rd                 |    2 
 man/NOF.Rd                 |    2 
 man/RGE.Rd                 |    4 -
 man/SHASH.Rd               |    2 
 man/SICHEL.Rd              |    2 
 man/ST3.Rd                 |    2 
 man/WEI3.Rd                |    2 
 man/ZIP2.Rd                |    2 
 man/exGAUS.Rd              |    2 
 man/gamlss.dist.package.Rd |    4 -
 man/parzen.Rd              |   29 ++++++++++-
 21 files changed, 168 insertions(+), 46 deletions(-)

Package: gamlss.cens
Type: Package
Title: Fitting interval response variabble using gamlss.family distributions
Version: 1.7.0
Date: 2007-10-01
Depends: R (>= 2.2.1), gamlss
Imports: survival
Author: Mikis Stasinopoulos , Bob Rigby , Nicoleta Mortan
Maintainer: Mikis Stasinopoulos 
Description: This is an add on package to GAMLSS. The purpose of this package is to allow users to fir censored data in
             GAMLSS models. The main function gen.cens() generates censored version of an existing GAMLSS family distribution.
License: GPL-2 | GPL-3
URL: http://www.gamlss.com/
Packaged: Tue Oct  2 12:07:53 2007; stasinom