RJaCGH-1.1.1/RJaCGH/inst/doc/RJaCGH-longrun.pdf |only RJaCGH-1.1.1/RJaCGH/inst/doc/TechReport.plus.Supl.Mat.pdf |only RJaCGH-1.1.1/RJaCGH/man/pMCR.Rd |only RJaCGH-1.1.1/RJaCGH/man/print.pMCR.RJaCGH.Rd |only RJaCGH-1.2.0/RJaCGH/Changes | 10 RJaCGH-1.2.0/RJaCGH/DESCRIPTION | 8 RJaCGH-1.2.0/RJaCGH/NAMESPACE | 41 RJaCGH-1.2.0/RJaCGH/R/RJaCGH.R | 3140 ++++++++++---- RJaCGH-1.2.0/RJaCGH/inst/doc/.log |only RJaCGH-1.2.0/RJaCGH/man/Q.NH.Rd | 10 RJaCGH-1.2.0/RJaCGH/man/RJaCGH.Rd | 84 RJaCGH-1.2.0/RJaCGH/man/chainsSelect.Rd | 11 RJaCGH-1.2.0/RJaCGH/man/collapseChain.Rd | 9 RJaCGH-1.2.0/RJaCGH/man/gelman.brooks.plot.Rd | 14 RJaCGH-1.2.0/RJaCGH/man/genome.plot.Rd | 8 RJaCGH-1.2.0/RJaCGH/man/getSequence.Rd |only RJaCGH-1.2.0/RJaCGH/man/model.averaging.Rd | 9 RJaCGH-1.2.0/RJaCGH/man/normal.HMM.likelihood.NH.C.Rd | 9 RJaCGH-1.2.0/RJaCGH/man/pREC_A.Rd |only RJaCGH-1.2.0/RJaCGH/man/pREC_S.Rd |only RJaCGH-1.2.0/RJaCGH/man/plot.Q.NH.Rd | 9 RJaCGH-1.2.0/RJaCGH/man/plot.RJaCGH.Rd | 39 RJaCGH-1.2.0/RJaCGH/man/plot.pREC_S.RJaCGH.array.Rd |only RJaCGH-1.2.0/RJaCGH/man/print.pREC_A.RJaCGH.Rd |only RJaCGH-1.2.0/RJaCGH/man/print.pREC_S.RJaCGH.array.Rd |only RJaCGH-1.2.0/RJaCGH/man/print.summary.RJaCGH.Rd |only RJaCGH-1.2.0/RJaCGH/man/prob.seq.Rd |only RJaCGH-1.2.0/RJaCGH/man/relabelStates.Rd |only RJaCGH-1.2.0/RJaCGH/man/simulateRJaCGH.Rd | 12 RJaCGH-1.2.0/RJaCGH/man/smoothMeans.Rd |only RJaCGH-1.2.0/RJaCGH/man/states.Rd | 19 RJaCGH-1.2.0/RJaCGH/man/summary.RJaCGH.Rd | 35 RJaCGH-1.2.0/RJaCGH/man/trace.plot.Rd | 9 RJaCGH-1.2.0/RJaCGH/src/nnhl.c | 535 +- 34 files changed, 2959 insertions(+), 1052 deletions(-)More information about RJaCGH at CRAN
DESCRIPTION | 17 +++---- NAMESPACE | 2 R/covAxis.R |only R/ics-class.R | 39 +++++++++------- R/ics.R | 111 ++++++++++++++++++++++++++++-------------------- R/screeplot.ics.R | 8 +-- R/tM.R |only inst/CHANGES |only man/ICS-package.Rd | 17 +++---- man/cov4.Rd | 10 ++-- man/covAxis.Rd |only man/fitted.ics.Rd | 4 - man/ics-class.Rd | 13 +++-- man/ics.Rd | 57 +++++++++++++++++++----- man/mean3.Rd | 8 +-- man/mvnorm.kur.test.Rd | 13 +++-- man/mvnorm.skew.test.Rd | 6 +- man/plot.ics.Rd | 2 man/screeplot.ics.Rd | 9 ++- man/tM.Rd |only 20 files changed, 189 insertions(+), 127 deletions(-)More information about ICS at CRAN
DESCRIPTION | 6 +++--- NEWS | 18 ++++++++++++++++-- R/nls2.R | 29 +++++++++++++++++++++++++---- man/nls2.Rd | 56 ++++++++++++++++++++++++++++++++++++++------------------ 4 files changed, 82 insertions(+), 27 deletions(-)More information about nls2 at CRAN
dtw-0.1-2/dtw/R/euclideanSquared.R |only dtw-0.1-2/dtw/data/testmatrix.rda |only dtw-0.1-2/dtw/data/testq.rda |only dtw-0.1-2/dtw/data/testt.rda |only dtw-0.1-2/dtw/man/euclideanSquared.Rd |only dtw-0.1-2/dtw/man/testmatrix.Rd |only dtw-0.3-1/dtw/DESCRIPTION | 5 dtw-0.3-1/dtw/R/backtrack.R | 38 ++++- dtw-0.3-1/dtw/R/distance.R |only dtw-0.3-1/dtw/R/dtw-internal.R | 13 + dtw-0.3-1/dtw/R/dtw.R | 90 +++++++++++- dtw-0.3-1/dtw/R/globalCostMatrix.R | 109 +++++++-------- dtw-0.3-1/dtw/R/plot.dtw.R |only dtw-0.3-1/dtw/R/stepPattern.R |only dtw-0.3-1/dtw/R/window.R | 82 +++++++++-- dtw-0.3-1/dtw/data/aami3a.rda |only dtw-0.3-1/dtw/data/aami3b.rda |only dtw-0.3-1/dtw/demo |only dtw-0.3-1/dtw/inst/TODO | 22 ++- dtw-0.3-1/dtw/inst/dtw.bib |only dtw-0.3-1/dtw/man/aami.Rd |only dtw-0.3-1/dtw/man/dtw-internal.Rd | 3 dtw-0.3-1/dtw/man/dtw-package.Rd | 40 +++-- dtw-0.3-1/dtw/man/dtw.Rd | 205 ++++++++++++++++------------- dtw-0.3-1/dtw/man/dtwDistanceFunctions.Rd |only dtw-0.3-1/dtw/man/dtwPlotThreeWay.Rd |only dtw-0.3-1/dtw/man/dtwWindowingFunctions.Rd | 136 ++++++++++++++----- dtw-0.3-1/dtw/man/plot.dtw.Rd |only dtw-0.3-1/dtw/man/stepPattern.Rd |only dtw-0.3-1/dtw/tests |only 30 files changed, 510 insertions(+), 233 deletions(-)More information about dtw at CRAN
DESCRIPTION | 8 ++++---- R/vmask.R | 24 +++++++++++++++--------- man/argosfilter-package.Rd | 6 +++--- 3 files changed, 22 insertions(+), 16 deletions(-)More information about argosfilter at CRAN
DESCRIPTION | 8 NAMESPACE | 2 inst/doc/GOSim.Rnw | 8 inst/doc/GOSim.aux | 30 inst/doc/GOSim.bbl | 6 inst/doc/GOSim.blg | 60 - inst/doc/GOSim.log | 38 inst/doc/GOSim.out | 1 inst/doc/GOSim.pdf | 2370 +++++++++++++++++++++++++++-------------------------- inst/doc/GOSim.tex | 38 man/getGOGraph.Rd | 2 11 files changed, 1345 insertions(+), 1218 deletions(-)More information about GOSim at CRAN
perturb-2.02/perturb/data/consumption.rda |only perturb-2.03/perturb/DESCRIPTION | 4 ++-- perturb-2.03/perturb/R/colldiag.R | 2 +- perturb-2.03/perturb/R/perturb.R | 2 +- perturb-2.03/perturb/data/consumption.dat |only perturb-2.03/perturb/data/consumption.r |only perturb-2.03/perturb/man/colldiag.Rd | 1 - 7 files changed, 4 insertions(+), 5 deletions(-)More information about perturb at CRAN
DESCRIPTION | 5 +++-- R/strify.R | 1 + R/xorder.R | 2 +- 3 files changed, 5 insertions(+), 3 deletions(-)More information about mefa at CRAN
MBESS-0.0.9/MBESS/LICENSE |only MBESS-0.0.9/MBESS/R/ss.aipe.c.sensitivity.ancova.R |only MBESS-0.0.9/MBESS/man/ss.aipe.c.sensitivity.ancova.Rd |only MBESS-1.0.0/MBESS/ACKNOWLEDGEMENTS | 13 +++-- MBESS-1.0.0/MBESS/DESCRIPTION | 14 +++--- MBESS-1.0.0/MBESS/DISCLAIMER |only MBESS-1.0.0/MBESS/R/ancova.random.data.R |only MBESS-1.0.0/MBESS/R/ci.c.R | 1 MBESS-1.0.0/MBESS/R/ci.reg.coef.R | 4 - MBESS-1.0.0/MBESS/R/ci.rmsea.R |only MBESS-1.0.0/MBESS/R/ci.sc.ancova.R | 7 +-- MBESS-1.0.0/MBESS/R/ss.aipe.c.ancova.sensitivity.R |only MBESS-1.0.0/MBESS/R/ss.aipe.reg.coef.sensitivity.R | 3 - MBESS-1.0.0/MBESS/R/ss.aipe.sc.ancova.R |only MBESS-1.0.0/MBESS/R/ss.aipe.sc.ancova.sensitivity.R |only MBESS-1.0.0/MBESS/R/ss.aipe.sc.sensitivity.R | 15 +++--- MBESS-1.0.0/MBESS/R/vit.fitted.R | 10 ++-- MBESS-1.0.0/MBESS/TIMELINE |only MBESS-1.0.0/MBESS/data/Cor.Mat.Lomax.rda |only MBESS-1.0.0/MBESS/data/Cor.Mat.MM.rda |only MBESS-1.0.0/MBESS/man/Cor.Mat.Lomax.Rd |only MBESS-1.0.0/MBESS/man/Cor.Mat.MM.Rd |only MBESS-1.0.0/MBESS/man/Expected.R2.Rd | 6 +- MBESS-1.0.0/MBESS/man/F.and.R2.Noncentral.Conversion.Rd | 2 MBESS-1.0.0/MBESS/man/Gardner.LD.Rd | 8 +-- MBESS-1.0.0/MBESS/man/HS.data.Rd | 5 -- MBESS-1.0.0/MBESS/man/MBESS-package.Rd | 12 +++-- MBESS-1.0.0/MBESS/man/Variance.R2.Rd | 3 - MBESS-1.0.0/MBESS/man/aipe.smd.Rd | 7 +-- MBESS-1.0.0/MBESS/man/ancova.random.data.Rd |only MBESS-1.0.0/MBESS/man/ci.R.Rd | 24 ++++------ MBESS-1.0.0/MBESS/man/ci.R2.Rd | 9 ++- MBESS-1.0.0/MBESS/man/ci.c.Rd | 17 +++---- MBESS-1.0.0/MBESS/man/ci.c.ancova.Rd | 9 ++- MBESS-1.0.0/MBESS/man/ci.cv.Rd | 6 ++ MBESS-1.0.0/MBESS/man/ci.pvaf.Rd | 12 +++-- MBESS-1.0.0/MBESS/man/ci.rc.Rd | 4 - MBESS-1.0.0/MBESS/man/ci.reg.coef.Rd | 11 ++-- MBESS-1.0.0/MBESS/man/ci.rmsea.Rd |only MBESS-1.0.0/MBESS/man/ci.sc.Rd | 8 ++- MBESS-1.0.0/MBESS/man/ci.sc.ancova.Rd | 19 ++++++-- MBESS-1.0.0/MBESS/man/ci.sm.Rd | 20 +++++--- MBESS-1.0.0/MBESS/man/ci.smd.Rd | 7 +-- MBESS-1.0.0/MBESS/man/ci.smd.c.Rd | 5 -- MBESS-1.0.0/MBESS/man/ci.snr.Rd | 7 ++- MBESS-1.0.0/MBESS/man/ci.src.Rd | 14 +++--- MBESS-1.0.0/MBESS/man/ci.srsnr.Rd | 28 ++++++------ MBESS-1.0.0/MBESS/man/conf.limits.nc.chisq.Rd | 2 MBESS-1.0.0/MBESS/man/conf.limits.ncf.Rd | 2 MBESS-1.0.0/MBESS/man/conf.limits.nct.Rd | 8 ++- MBESS-1.0.0/MBESS/man/cv.Rd | 2 MBESS-1.0.0/MBESS/man/intr.plot.2d.Rd | 10 +++- MBESS-1.0.0/MBESS/man/intr.plot.Rd | 10 ++-- MBESS-1.0.0/MBESS/man/signal.to.noise.R2.Rd | 2 MBESS-1.0.0/MBESS/man/smd.Rd | 2 MBESS-1.0.0/MBESS/man/smd.c.Rd | 2 MBESS-1.0.0/MBESS/man/ss.aipe.R2.Rd | 37 +++++++++------- MBESS-1.0.0/MBESS/man/ss.aipe.R2.sensitivity.Rd | 6 -- MBESS-1.0.0/MBESS/man/ss.aipe.c.Rd | 4 - MBESS-1.0.0/MBESS/man/ss.aipe.c.ancova.Rd | 5 +- MBESS-1.0.0/MBESS/man/ss.aipe.c.ancova.sensitivity.Rd |only MBESS-1.0.0/MBESS/man/ss.aipe.cv.Rd | 4 - MBESS-1.0.0/MBESS/man/ss.aipe.cv.sensitivity.Rd | 3 - MBESS-1.0.0/MBESS/man/ss.aipe.rc.Rd | 9 ++- MBESS-1.0.0/MBESS/man/ss.aipe.rc.sensitivity.Rd | 9 ++- MBESS-1.0.0/MBESS/man/ss.aipe.reg.coef.Rd | 5 +- MBESS-1.0.0/MBESS/man/ss.aipe.reg.coef.sensitivity.Rd | 2 MBESS-1.0.0/MBESS/man/ss.aipe.sc.Rd | 10 +++- MBESS-1.0.0/MBESS/man/ss.aipe.sc.ancova.Rd |only MBESS-1.0.0/MBESS/man/ss.aipe.sc.ancova.sensitivity.Rd |only MBESS-1.0.0/MBESS/man/ss.aipe.sc.sensitivity.Rd | 24 +++------- MBESS-1.0.0/MBESS/man/ss.aipe.sm.Rd | 6 +- MBESS-1.0.0/MBESS/man/ss.aipe.sm.sensitivity.Rd | 14 +++--- MBESS-1.0.0/MBESS/man/ss.aipe.smd.Rd | 5 +- MBESS-1.0.0/MBESS/man/ss.aipe.smd.sensitivity.Rd | 5 +- MBESS-1.0.0/MBESS/man/ss.aipe.src.Rd | 23 +++++---- MBESS-1.0.0/MBESS/man/ss.aipe.src.sensitivity.Rd | 20 ++++---- MBESS-1.0.0/MBESS/man/ss.power.rc.Rd | 10 ++-- MBESS-1.0.0/MBESS/man/ss.power.reg.coef.Rd | 4 - MBESS-1.0.0/MBESS/man/t.and.smd.conversion.Rd | 2 MBESS-1.0.0/MBESS/man/vit.Rd | 2 MBESS-1.0.0/MBESS/man/vit.fitted.Rd | 18 +++++-- 82 files changed, 324 insertions(+), 253 deletions(-)More information about MBESS at CRAN
DESCRIPTION | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-)More information about kappalab at CRAN
GOSim-1.0.3/GOSim/data/ICsBPIMP.rda |only GOSim-1.0.3/GOSim/inst/doc/GOCluster.bib |only GOSim-1.0.3/GOSim/inst/doc/GOSim-GOExample.pdf |only GOSim-1.0.3/GOSim/inst/doc/Rplots.ps |only GOSim-1.0.3/GOSim/inst/doc/references.bib |only GOSim-1.1/GOSim/DESCRIPTION | 10 GOSim-1.1/GOSim/NAMESPACE | 2 GOSim-1.1/GOSim/R/GOenrichment.R |only GOSim-1.1/GOSim/R/clusterEvaluation.R | 19 GOSim-1.1/GOSim/R/geneSimilarity.R | 57 GOSim-1.1/GOSim/R/general.R | 7 GOSim-1.1/GOSim/R/termSimilarity.R | 14 GOSim-1.1/GOSim/data/ICsBPIMP_IGI_IDA_IEP_IPI.rda |binary GOSim-1.1/GOSim/data/ICsBPall.rda |binary GOSim-1.1/GOSim/data/ICsCCIMP_IGI_IDA_IEP_IPI.rda |binary GOSim-1.1/GOSim/data/ICsCCall.rda |binary GOSim-1.1/GOSim/data/ICsMFIMP_IGI_IDA_IEP_IPI.rda |binary GOSim-1.1/GOSim/data/ICsMFall.rda |binary GOSim-1.1/GOSim/inst/doc/GOSim.Rnw | 39 GOSim-1.1/GOSim/inst/doc/GOSim.aux | 43 GOSim-1.1/GOSim/inst/doc/GOSim.bbl |only GOSim-1.1/GOSim/inst/doc/GOSim.blg |only GOSim-1.1/GOSim/inst/doc/GOSim.log |only GOSim-1.1/GOSim/inst/doc/GOSim.out |only GOSim-1.1/GOSim/inst/doc/GOSim.pdf | 2625 ++++++++++++---------- GOSim-1.1/GOSim/inst/doc/GOSim.tex | 183 + GOSim-1.1/GOSim/man/GOenrichment.Rd |only GOSim-1.1/GOSim/man/evaluateClustering.Rd | 48 GOSim-1.1/GOSim/man/getGOGraph.Rd | 13 GOSim-1.1/GOSim/man/getGeneSim.Rd | 13 30 files changed, 1874 insertions(+), 1199 deletions(-)More information about GOSim at CRAN
DESCRIPTION | 4 ++-- R/ctab.R | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-)More information about catspec at CRAN