Package seqinr updated to version 1.1-4 with previous version 1.1-2 dated 2007-09-27
Diff between seqinr versions 1.1-2 dated 2007-09-27 and 1.1-4 dated 2007-12-10
seqinr-1.1-2/seqinr/R/R_fasta.R |only
seqinr-1.1-2/seqinr/inst/doc/seqinr_1_1-2.pdf |only
seqinr-1.1-2/seqinr/inst/doc/src/mainmatter/acnuc_sockets.rnw |only
seqinr-1.1-2/seqinr/man/GetFromSequence.Rd |only
seqinr-1.1-4/seqinr/DESCRIPTION | 12
seqinr-1.1-4/seqinr/R/ClassSeq.R | 426 ---
seqinr-1.1-4/seqinr/R/GC.R |only
seqinr-1.1-4/seqinr/R/R_socket.R | 690 -----
seqinr-1.1-4/seqinr/R/acnucclose.R |only
seqinr-1.1-4/seqinr/R/acnucopen.R |only
seqinr-1.1-4/seqinr/R/allistranks.R | 7
seqinr-1.1-4/seqinr/R/autosocket.R |only
seqinr-1.1-4/seqinr/R/choosebank.R |only
seqinr-1.1-4/seqinr/R/clfcd.R | 38
seqinr-1.1-4/seqinr/R/clientid.R |only
seqinr-1.1-4/seqinr/R/closebank.R |only
seqinr-1.1-4/seqinr/R/countfreelists.R |only
seqinr-1.1-4/seqinr/R/countsubseqs.R |only
seqinr-1.1-4/seqinr/R/extractseqs.R | 7
seqinr-1.1-4/seqinr/R/getAnnot.R |only
seqinr-1.1-4/seqinr/R/getFrag.R |only
seqinr-1.1-4/seqinr/R/getKeyword.R |only
seqinr-1.1-4/seqinr/R/getLength.R |only
seqinr-1.1-4/seqinr/R/getLocation.R |only
seqinr-1.1-4/seqinr/R/getName.R |only
seqinr-1.1-4/seqinr/R/getSequence.R |only
seqinr-1.1-4/seqinr/R/getTrans.R |only
seqinr-1.1-4/seqinr/R/getType.R | 9
seqinr-1.1-4/seqinr/R/getlistrank.R | 7
seqinr-1.1-4/seqinr/R/getliststate.R |only
seqinr-1.1-4/seqinr/R/gfrag.R |only
seqinr-1.1-4/seqinr/R/ghelp.R |only
seqinr-1.1-4/seqinr/R/isenum.R |only
seqinr-1.1-4/seqinr/R/knowndbs.R |only
seqinr-1.1-4/seqinr/R/modifylist.R |only
seqinr-1.1-4/seqinr/R/parser.socket.R |only
seqinr-1.1-4/seqinr/R/plot.SeqAcnucWeb.R | 165 -
seqinr-1.1-4/seqinr/R/prettyseq.R |only
seqinr-1.1-4/seqinr/R/query.r |only
seqinr-1.1-4/seqinr/R/quitacnuc.R |only
seqinr-1.1-4/seqinr/R/read.alignment.R | 8
seqinr-1.1-4/seqinr/R/read.fasta.R |only
seqinr-1.1-4/seqinr/R/readfirstrec.R |only
seqinr-1.1-4/seqinr/R/readsmj.R | 9
seqinr-1.1-4/seqinr/R/residuecount.R |only
seqinr-1.1-4/seqinr/R/savelist.R |only
seqinr-1.1-4/seqinr/R/setlistname.R |only
seqinr-1.1-4/seqinr/R/util.R | 163 -
seqinr-1.1-4/seqinr/data/m16j.RData |only
seqinr-1.1-4/seqinr/data/waterabs.RData |only
seqinr-1.1-4/seqinr/inst/doc/seqinr_1_1-4.pdf |only
seqinr-1.1-4/seqinr/inst/doc/src/appendix/FAQ.rnw | 149 +
seqinr-1.1-4/seqinr/inst/doc/src/appendix/FAQ.tex | 216 +
seqinr-1.1-4/seqinr/inst/doc/src/appendix/gencodes.tex | 18
seqinr-1.1-4/seqinr/inst/doc/src/appendix/releasenotes.rnw | 142 +
seqinr-1.1-4/seqinr/inst/doc/src/appendix/releasenotes.tex | 195 +
seqinr-1.1-4/seqinr/inst/doc/src/appendix/rundontrun.rnw |only
seqinr-1.1-4/seqinr/inst/doc/src/appendix/rundontrun.tex |only
seqinr-1.1-4/seqinr/inst/doc/src/appendix/subsequences.rnw | 33
seqinr-1.1-4/seqinr/inst/doc/src/appendix/subsequences.tex | 1236 +++++++---
seqinr-1.1-4/seqinr/inst/doc/src/book/book.rnw | 51
seqinr-1.1-4/seqinr/inst/doc/src/config/book.bib | 214 +
seqinr-1.1-4/seqinr/inst/doc/src/config/commonrnw.rnw | 2
seqinr-1.1-4/seqinr/inst/doc/src/config/sessionInfo.rnw | 2
seqinr-1.1-4/seqinr/inst/doc/src/figs/cover.pdf | 8
seqinr-1.1-4/seqinr/inst/doc/src/figs/gcskewmbe96.pdf |only
seqinr-1.1-4/seqinr/inst/doc/src/figs/query_win_screenshot.pdf |only
seqinr-1.1-4/seqinr/inst/doc/src/frontmatter/cover.rnw | 7
seqinr-1.1-4/seqinr/inst/doc/src/frontmatter/cover.tex | 19
seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/acnucsocket.rnw |only
seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/acnucsocket.tex |only
seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/chr1.RData |only
seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/dealseq.tex | 20
seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/getseqacnuc.rnw | 133 -
seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/getseqacnuc.tex | 374 +--
seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/getseqflat.rnw | 41
seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/getseqflat.tex | 71
seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/introduction.rnw | 59
seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/introduction.tex | 81
seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/multivariate.tex | 18
seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/nonparastats.rnw | 815 +++++-
seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/nonparastats.tex | 974 +++++++
seqinr-1.1-4/seqinr/inst/doc/src/misc/seqinRtodolist.txt | 18
seqinr-1.1-4/seqinr/inst/doc/src/tables/aacost.tex | 4
seqinr-1.1-4/seqinr/inst/doc/src/tables/dpqrtable.tex | 4
seqinr-1.1-4/seqinr/inst/doc/src/tables/toyaa.tex | 4
seqinr-1.1-4/seqinr/inst/doc/src/tables/toycodon.tex | 4
seqinr-1.1-4/seqinr/inst/sequences/legacy.fasta |only
seqinr-1.1-4/seqinr/inst/sequences/someORF.fsa |only
seqinr-1.1-4/seqinr/man/GC.Rd | 117
seqinr-1.1-4/seqinr/man/SeqAcnucWeb.Rd | 32
seqinr-1.1-4/seqinr/man/SeqFastaAA.Rd | 2
seqinr-1.1-4/seqinr/man/SeqFrag.Rd | 20
seqinr-1.1-4/seqinr/man/aacost.Rd | 9
seqinr-1.1-4/seqinr/man/acnucopen.Rd |only
seqinr-1.1-4/seqinr/man/alllistranks.Rd | 34
seqinr-1.1-4/seqinr/man/autosocket.Rd |only
seqinr-1.1-4/seqinr/man/choosebank.Rd | 44
seqinr-1.1-4/seqinr/man/closebank.Rd | 16
seqinr-1.1-4/seqinr/man/countfreelists.Rd |only
seqinr-1.1-4/seqinr/man/countsubseqs.Rd |only
seqinr-1.1-4/seqinr/man/crelistfromclientdata.Rd | 40
seqinr-1.1-4/seqinr/man/dinucl.Rd | 25
seqinr-1.1-4/seqinr/man/draw.rearranged.oriloc.Rd | 5
seqinr-1.1-4/seqinr/man/extractseqs.Rd | 23
seqinr-1.1-4/seqinr/man/getAnnot.Rd |only
seqinr-1.1-4/seqinr/man/getFrag.Rd |only
seqinr-1.1-4/seqinr/man/getKeyword.Rd |only
seqinr-1.1-4/seqinr/man/getLength.Rd |only
seqinr-1.1-4/seqinr/man/getLocation.Rd |only
seqinr-1.1-4/seqinr/man/getName.Rd |only
seqinr-1.1-4/seqinr/man/getSequence.Rd |only
seqinr-1.1-4/seqinr/man/getTrans.Rd |only
seqinr-1.1-4/seqinr/man/getType.Rd | 12
seqinr-1.1-4/seqinr/man/getlistrank.Rd | 25
seqinr-1.1-4/seqinr/man/getliststate.Rd |only
seqinr-1.1-4/seqinr/man/gfrag.Rd |only
seqinr-1.1-4/seqinr/man/ghelp.Rd |only
seqinr-1.1-4/seqinr/man/isenum.Rd |only
seqinr-1.1-4/seqinr/man/kaks.Rd | 4
seqinr-1.1-4/seqinr/man/knowndbs.Rd |only
seqinr-1.1-4/seqinr/man/m16j.Rd |only
seqinr-1.1-4/seqinr/man/modifylist.Rd |only
seqinr-1.1-4/seqinr/man/parser.socket.Rd |only
seqinr-1.1-4/seqinr/man/plot.SeqAcnucWeb.Rd | 21
seqinr-1.1-4/seqinr/man/prettyseq.Rd |only
seqinr-1.1-4/seqinr/man/print.SeqAcnucWeb.Rd |only
seqinr-1.1-4/seqinr/man/prochlo.Rd | 69
seqinr-1.1-4/seqinr/man/query.Rd | 20
seqinr-1.1-4/seqinr/man/read.alignment.Rd | 17
seqinr-1.1-4/seqinr/man/read.fasta.Rd | 64
seqinr-1.1-4/seqinr/man/readfirstrec.Rd | 9
seqinr-1.1-4/seqinr/man/readsmj.Rd | 8
seqinr-1.1-4/seqinr/man/rearranged.oriloc.Rd | 6
seqinr-1.1-4/seqinr/man/residuecount.Rd |only
seqinr-1.1-4/seqinr/man/s2c.Rd | 10
seqinr-1.1-4/seqinr/man/savelist.Rd |only
seqinr-1.1-4/seqinr/man/seqinr-package.Rd | 2
seqinr-1.1-4/seqinr/man/setlistname.Rd |only
seqinr-1.1-4/seqinr/man/tablecode.Rd | 8
seqinr-1.1-4/seqinr/man/uco.Rd | 2
seqinr-1.1-4/seqinr/man/waterabs.Rd |only
seqinr-1.1-4/seqinr/man/zscore.Rd | 10
seqinr-1.1-4/seqinr/src/getzlibsock.c | 12
144 files changed, 4474 insertions(+), 2645 deletions(-)
More information about seqinr at CRAN
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