Mon, 10 Dec 2007

Package shapes updated to version 1.1-1 with previous version 1.1-0 dated 2007-10-29
Diff between shapes versions 1.1-0 dated 2007-10-29 and 1.1-1 dated 2007-12-10
 shapes-1.1-0/shapes/man/shapepca3d.Rd |only
 shapes-1.1-1/shapes/DESCRIPTION       |    8 -
 shapes-1.1-1/shapes/INDEX             |    1 
 shapes-1.1-1/shapes/R/shapes.R        |  260 ++++++++++++++++++----------------
 shapes-1.1-1/shapes/man/shapepca.Rd   |    3 
 shapes-1.1-1/shapes/man/shapes3d.Rd   |    3 
 shapes-1.1-1/shapes/man/tpsgrid.Rd    |   19 +-
 7 files changed, 157 insertions(+), 137 deletions(-)
More information about shapes at CRAN
Permanent link
Package sfsmisc updated to version 1.0-0 with previous version 0.96-01 dated 2007-11-21
Diff between sfsmisc versions 0.96-01 dated 2007-11-21 and 1.0-0 dated 2007-12-10
 sfsmisc-0.96-01/sfsmisc/man/pl.ds.Rd         |only
 sfsmisc-1.0-0/sfsmisc/ChangeLog              |   27 +++-
 sfsmisc-1.0-0/sfsmisc/DESCRIPTION            |    8 -
 sfsmisc-1.0-0/sfsmisc/NAMESPACE              |    6 
 sfsmisc-1.0-0/sfsmisc/NEWS                   |   33 +++--
 sfsmisc-1.0-0/sfsmisc/R/Deprecated.R         |    6 
 sfsmisc-1.0-0/sfsmisc/R/misc-goodies.R       |  178 ++++++++++++++++++++++++++-
 sfsmisc-1.0-0/sfsmisc/R/nearcor.R            |    7 -
 sfsmisc-1.0-0/sfsmisc/R/zzz.R                |    2 
 sfsmisc-1.0-0/sfsmisc/inst/ChangeLog         |   27 +++-
 sfsmisc-1.0-0/sfsmisc/inst/NEWS              |   33 +++--
 sfsmisc-1.0-0/sfsmisc/inst/doc               |only
 sfsmisc-1.0-0/sfsmisc/man/nearcor.Rd         |   16 +-
 sfsmisc-1.0-0/sfsmisc/man/plotDS.Rd          |only
 sfsmisc-1.0-0/sfsmisc/man/posdefify.Rd       |    3 
 sfsmisc-1.0-0/sfsmisc/man/roundfixS.Rd       |only
 sfsmisc-1.0-0/sfsmisc/man/seqXtend.Rd        |only
 sfsmisc-1.0-0/sfsmisc/tests/posdef.R         |   24 +++
 sfsmisc-1.0-0/sfsmisc/tests/posdef.Rout.save |   38 +++++
 19 files changed, 370 insertions(+), 38 deletions(-)
More information about sfsmisc at CRAN
Permanent link
Package Runuran updated to version 0.6 with previous version 0.5 dated 2007-08-02
Diff between Runuran versions 0.5 dated 2007-08-02 and 0.6 dated 2007-12-10
 DESCRIPTION                                 |    6 -
 NEWS                                        |   15 ++++
 R/unuran_cmv.R                              |   16 +++-
 R/unuran_methods.R                          |   19 ++++-
 configure                                   |   90 +++++++++++++++++++++++++---
 configure.ac                                |    6 +
 man/Runuran-package.Rd                      |    5 -
 man/unuran.cmv-class.Rd                     |   43 ++++++++++++-
 man/urhitro.Rd                              |   36 ++++++++++-
 src/Runuran.h                               |    5 -
 src/Runuran_distr.c                         |   25 ++++++-
 src/config.h.in                             |    3 
 src/unuran-src/methods/mvtdr.c              |only
 src/unuran-src/methods/mvtdr.h              |only
 src/unuran-src/methods/mvtdr_debug.ch       |only
 src/unuran-src/methods/mvtdr_init.ch        |only
 src/unuran-src/methods/mvtdr_newset.ch      |only
 src/unuran-src/methods/mvtdr_sample.ch      |only
 src/unuran-src/methods/mvtdr_struct.h       |only
 src/unuran-src/methods/tdr_newset.ch        |    2 
 src/unuran-src/parser/stringparser_lists.ch |   31 +++++++++
 src/unuran-src/unuran.h                     |    8 ++
 src/unuran-src/unuran.h.in                  |    1 
 src/unuran-src/utils/debug.c                |   10 +--
 src/unuran-src/utils/stream.c               |    7 +-
 tests/test_distributions_cont.R             |    2 
 tests/test_methods.R                        |   20 ++++++
 27 files changed, 306 insertions(+), 44 deletions(-)
More information about Runuran at CRAN
Permanent link
Package RFOC updated to version 1.0-3 with previous version 1.0-2 dated 2007-10-16
Diff between RFOC versions 1.0-2 dated 2007-10-16 and 1.0-3 dated 2007-12-10
 DESCRIPTION |    4 ++--
 R/alpha95.R |    2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)
More information about RFOC at CRAN
Permanent link
Package ProfessR updated to version 1.01 with previous version 1.0 dated 2007-11-04
Diff between ProfessR versions 1.0 dated 2007-11-04 and 1.01 dated 2007-12-10
 DESCRIPTION                  |    4 
 R/DUMPbank.R                 |only
 inst/doc/ExamMaker.log       |    4 
 inst/doc/ExamMaker.pdf       |binary
 inst/doc/Grader.log          |    4 
 inst/doc/Grader.pdf          |binary
 inst/doc/Grader.tex          |   62 +++++-----
 inst/doc/Rplots.ps           |  263 +++++++++++++++++++------------------------
 inst/doc/exam2A.tex          |  221 +++++++++++++++++-------------------
 inst/doc/exam2A.tex.ANS      |   38 +++---
 inst/doc/exam2Asolutions.tex |   76 ++++++------
 inst/doc/exam2B.tex          |  243 +++++++++++++++++++--------------------
 inst/doc/exam2B.tex.ANS      |   42 +++---
 inst/doc/exam2Bsolutions.tex |   84 ++++++-------
 inst/doc/grades-004.pdf      |    4 
 man/DUMPbank.Rd              |only
 man/Get.testbank.Rd          |    9 +
 17 files changed, 518 insertions(+), 536 deletions(-)
More information about ProfessR at CRAN
Permanent link
Package GOSim updated to version 1.1.2 with previous version 1.1.1 dated 2007-12-07
Diff between GOSim versions 1.1.1 dated 2007-12-07 and 1.1.2 dated 2007-12-10
 DESCRIPTION               |    6 
 R/GOenrichment.R          |   10 
 R/clusterEvaluation.R     |    8 
 R/termSimilarity.R        |    2 
 inst/doc/GOSim.log        |   20 
 inst/doc/GOSim.pdf        | 1324 ++++++++++++++++++++++------------------------
 inst/doc/GOSim.tex        |   60 +-
 man/GOenrichment.Rd       |    1 
 man/evaluateClustering.Rd |    1 
 9 files changed, 719 insertions(+), 713 deletions(-)
More information about GOSim at CRAN
Permanent link
Package epicalc updated to version 2.6.1.1 with previous version 2.6.1.0 dated 2007-12-05
Diff between epicalc versions 2.6.1.0 dated 2007-12-05 and 2.6.1.1 dated 2007-12-10
 DESCRIPTION         |    6 +-
 R/epicalc.R         |  109 ++++++++++++++++++++++++++++++++++++----------------
 man/risk.display.rd |    6 +-
 man/tableStack.rd   |    1 
 4 files changed, 83 insertions(+), 39 deletions(-)
More information about epicalc at CRAN
Permanent link
Package animation updated to version 0.1-2 with previous version 0.1-1 dated 2007-12-02
Diff between animation versions 0.1-1 dated 2007-12-02 and 0.1-2 dated 2007-12-10
 animation-0.1-1/animation/NEWS                     |only
 animation-0.1-2/animation/DESCRIPTION              |    8 
 animation-0.1-2/animation/R/ani.control.R          |only
 animation-0.1-2/animation/R/boot.iid.R             |   26 
 animation-0.1-2/animation/R/brownian.motion.R      |   30 
 animation-0.1-2/animation/R/buffon.needle.R        |   26 
 animation-0.1-2/animation/R/cv.ani.R               |   21 
 animation-0.1-2/animation/R/flip.coin.R            |   54 
 animation-0.1-2/animation/R/kfcv.R                 |    2 
 animation-0.1-2/animation/R/kmeans.ani.R           |   33 
 animation-0.1-2/animation/R/knn.ani.R              |   86 
 animation-0.1-2/animation/R/savePNG.R              |   10 
 animation-0.1-2/animation/data/pageview.rda        |binary
 animation-0.1-2/animation/inst/NEWS                |only
 animation-0.1-2/animation/inst/doc/animation.Rnw   |   23 
 animation-0.1-2/animation/inst/doc/animation.pdf   | 3159 ++++++++++-----------
 animation-0.1-2/animation/inst/doc/coin.pdf        |  854 ++---
 animation-0.1-2/animation/man/ani.control.Rd       |only
 animation-0.1-2/animation/man/ani.start.Rd         |    2 
 animation-0.1-2/animation/man/animation-package.Rd |   15 
 animation-0.1-2/animation/man/boot.iid.Rd          |   15 
 animation-0.1-2/animation/man/brownian.motion.Rd   |   29 
 animation-0.1-2/animation/man/buffon.needle.Rd     |   16 
 animation-0.1-2/animation/man/cv.ani.Rd            |   16 
 animation-0.1-2/animation/man/flip.coin.Rd         |   30 
 animation-0.1-2/animation/man/kfcv.Rd              |   12 
 animation-0.1-2/animation/man/kmeans.ani.Rd        |   20 
 animation-0.1-2/animation/man/knn.ani.Rd           |   25 
 animation-0.1-2/animation/man/pageview.Rd          |   10 
 animation-0.1-2/animation/man/savePNG.Rd           |   23 
 30 files changed, 2295 insertions(+), 2250 deletions(-)
More information about animation at CRAN
Permanent link
Package seqinr updated to version 1.1-4 with previous version 1.1-2 dated 2007-09-27
Diff between seqinr versions 1.1-2 dated 2007-09-27 and 1.1-4 dated 2007-12-10
 seqinr-1.1-2/seqinr/R/R_fasta.R                                |only
 seqinr-1.1-2/seqinr/inst/doc/seqinr_1_1-2.pdf                  |only
 seqinr-1.1-2/seqinr/inst/doc/src/mainmatter/acnuc_sockets.rnw  |only
 seqinr-1.1-2/seqinr/man/GetFromSequence.Rd                     |only
 seqinr-1.1-4/seqinr/DESCRIPTION                                |   12 
 seqinr-1.1-4/seqinr/R/ClassSeq.R                               |  426 ---
 seqinr-1.1-4/seqinr/R/GC.R                                     |only
 seqinr-1.1-4/seqinr/R/R_socket.R                               |  690 -----
 seqinr-1.1-4/seqinr/R/acnucclose.R                             |only
 seqinr-1.1-4/seqinr/R/acnucopen.R                              |only
 seqinr-1.1-4/seqinr/R/allistranks.R                            |    7 
 seqinr-1.1-4/seqinr/R/autosocket.R                             |only
 seqinr-1.1-4/seqinr/R/choosebank.R                             |only
 seqinr-1.1-4/seqinr/R/clfcd.R                                  |   38 
 seqinr-1.1-4/seqinr/R/clientid.R                               |only
 seqinr-1.1-4/seqinr/R/closebank.R                              |only
 seqinr-1.1-4/seqinr/R/countfreelists.R                         |only
 seqinr-1.1-4/seqinr/R/countsubseqs.R                           |only
 seqinr-1.1-4/seqinr/R/extractseqs.R                            |    7 
 seqinr-1.1-4/seqinr/R/getAnnot.R                               |only
 seqinr-1.1-4/seqinr/R/getFrag.R                                |only
 seqinr-1.1-4/seqinr/R/getKeyword.R                             |only
 seqinr-1.1-4/seqinr/R/getLength.R                              |only
 seqinr-1.1-4/seqinr/R/getLocation.R                            |only
 seqinr-1.1-4/seqinr/R/getName.R                                |only
 seqinr-1.1-4/seqinr/R/getSequence.R                            |only
 seqinr-1.1-4/seqinr/R/getTrans.R                               |only
 seqinr-1.1-4/seqinr/R/getType.R                                |    9 
 seqinr-1.1-4/seqinr/R/getlistrank.R                            |    7 
 seqinr-1.1-4/seqinr/R/getliststate.R                           |only
 seqinr-1.1-4/seqinr/R/gfrag.R                                  |only
 seqinr-1.1-4/seqinr/R/ghelp.R                                  |only
 seqinr-1.1-4/seqinr/R/isenum.R                                 |only
 seqinr-1.1-4/seqinr/R/knowndbs.R                               |only
 seqinr-1.1-4/seqinr/R/modifylist.R                             |only
 seqinr-1.1-4/seqinr/R/parser.socket.R                          |only
 seqinr-1.1-4/seqinr/R/plot.SeqAcnucWeb.R                       |  165 -
 seqinr-1.1-4/seqinr/R/prettyseq.R                              |only
 seqinr-1.1-4/seqinr/R/query.r                                  |only
 seqinr-1.1-4/seqinr/R/quitacnuc.R                              |only
 seqinr-1.1-4/seqinr/R/read.alignment.R                         |    8 
 seqinr-1.1-4/seqinr/R/read.fasta.R                             |only
 seqinr-1.1-4/seqinr/R/readfirstrec.R                           |only
 seqinr-1.1-4/seqinr/R/readsmj.R                                |    9 
 seqinr-1.1-4/seqinr/R/residuecount.R                           |only
 seqinr-1.1-4/seqinr/R/savelist.R                               |only
 seqinr-1.1-4/seqinr/R/setlistname.R                            |only
 seqinr-1.1-4/seqinr/R/util.R                                   |  163 -
 seqinr-1.1-4/seqinr/data/m16j.RData                            |only
 seqinr-1.1-4/seqinr/data/waterabs.RData                        |only
 seqinr-1.1-4/seqinr/inst/doc/seqinr_1_1-4.pdf                  |only
 seqinr-1.1-4/seqinr/inst/doc/src/appendix/FAQ.rnw              |  149 +
 seqinr-1.1-4/seqinr/inst/doc/src/appendix/FAQ.tex              |  216 +
 seqinr-1.1-4/seqinr/inst/doc/src/appendix/gencodes.tex         |   18 
 seqinr-1.1-4/seqinr/inst/doc/src/appendix/releasenotes.rnw     |  142 +
 seqinr-1.1-4/seqinr/inst/doc/src/appendix/releasenotes.tex     |  195 +
 seqinr-1.1-4/seqinr/inst/doc/src/appendix/rundontrun.rnw       |only
 seqinr-1.1-4/seqinr/inst/doc/src/appendix/rundontrun.tex       |only
 seqinr-1.1-4/seqinr/inst/doc/src/appendix/subsequences.rnw     |   33 
 seqinr-1.1-4/seqinr/inst/doc/src/appendix/subsequences.tex     | 1236 +++++++---
 seqinr-1.1-4/seqinr/inst/doc/src/book/book.rnw                 |   51 
 seqinr-1.1-4/seqinr/inst/doc/src/config/book.bib               |  214 +
 seqinr-1.1-4/seqinr/inst/doc/src/config/commonrnw.rnw          |    2 
 seqinr-1.1-4/seqinr/inst/doc/src/config/sessionInfo.rnw        |    2 
 seqinr-1.1-4/seqinr/inst/doc/src/figs/cover.pdf                |    8 
 seqinr-1.1-4/seqinr/inst/doc/src/figs/gcskewmbe96.pdf          |only
 seqinr-1.1-4/seqinr/inst/doc/src/figs/query_win_screenshot.pdf |only
 seqinr-1.1-4/seqinr/inst/doc/src/frontmatter/cover.rnw         |    7 
 seqinr-1.1-4/seqinr/inst/doc/src/frontmatter/cover.tex         |   19 
 seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/acnucsocket.rnw    |only
 seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/acnucsocket.tex    |only
 seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/chr1.RData         |only
 seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/dealseq.tex        |   20 
 seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/getseqacnuc.rnw    |  133 -
 seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/getseqacnuc.tex    |  374 +--
 seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/getseqflat.rnw     |   41 
 seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/getseqflat.tex     |   71 
 seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/introduction.rnw   |   59 
 seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/introduction.tex   |   81 
 seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/multivariate.tex   |   18 
 seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/nonparastats.rnw   |  815 +++++-
 seqinr-1.1-4/seqinr/inst/doc/src/mainmatter/nonparastats.tex   |  974 +++++++
 seqinr-1.1-4/seqinr/inst/doc/src/misc/seqinRtodolist.txt       |   18 
 seqinr-1.1-4/seqinr/inst/doc/src/tables/aacost.tex             |    4 
 seqinr-1.1-4/seqinr/inst/doc/src/tables/dpqrtable.tex          |    4 
 seqinr-1.1-4/seqinr/inst/doc/src/tables/toyaa.tex              |    4 
 seqinr-1.1-4/seqinr/inst/doc/src/tables/toycodon.tex           |    4 
 seqinr-1.1-4/seqinr/inst/sequences/legacy.fasta                |only
 seqinr-1.1-4/seqinr/inst/sequences/someORF.fsa                 |only
 seqinr-1.1-4/seqinr/man/GC.Rd                                  |  117 
 seqinr-1.1-4/seqinr/man/SeqAcnucWeb.Rd                         |   32 
 seqinr-1.1-4/seqinr/man/SeqFastaAA.Rd                          |    2 
 seqinr-1.1-4/seqinr/man/SeqFrag.Rd                             |   20 
 seqinr-1.1-4/seqinr/man/aacost.Rd                              |    9 
 seqinr-1.1-4/seqinr/man/acnucopen.Rd                           |only
 seqinr-1.1-4/seqinr/man/alllistranks.Rd                        |   34 
 seqinr-1.1-4/seqinr/man/autosocket.Rd                          |only
 seqinr-1.1-4/seqinr/man/choosebank.Rd                          |   44 
 seqinr-1.1-4/seqinr/man/closebank.Rd                           |   16 
 seqinr-1.1-4/seqinr/man/countfreelists.Rd                      |only
 seqinr-1.1-4/seqinr/man/countsubseqs.Rd                        |only
 seqinr-1.1-4/seqinr/man/crelistfromclientdata.Rd               |   40 
 seqinr-1.1-4/seqinr/man/dinucl.Rd                              |   25 
 seqinr-1.1-4/seqinr/man/draw.rearranged.oriloc.Rd              |    5 
 seqinr-1.1-4/seqinr/man/extractseqs.Rd                         |   23 
 seqinr-1.1-4/seqinr/man/getAnnot.Rd                            |only
 seqinr-1.1-4/seqinr/man/getFrag.Rd                             |only
 seqinr-1.1-4/seqinr/man/getKeyword.Rd                          |only
 seqinr-1.1-4/seqinr/man/getLength.Rd                           |only
 seqinr-1.1-4/seqinr/man/getLocation.Rd                         |only
 seqinr-1.1-4/seqinr/man/getName.Rd                             |only
 seqinr-1.1-4/seqinr/man/getSequence.Rd                         |only
 seqinr-1.1-4/seqinr/man/getTrans.Rd                            |only
 seqinr-1.1-4/seqinr/man/getType.Rd                             |   12 
 seqinr-1.1-4/seqinr/man/getlistrank.Rd                         |   25 
 seqinr-1.1-4/seqinr/man/getliststate.Rd                        |only
 seqinr-1.1-4/seqinr/man/gfrag.Rd                               |only
 seqinr-1.1-4/seqinr/man/ghelp.Rd                               |only
 seqinr-1.1-4/seqinr/man/isenum.Rd                              |only
 seqinr-1.1-4/seqinr/man/kaks.Rd                                |    4 
 seqinr-1.1-4/seqinr/man/knowndbs.Rd                            |only
 seqinr-1.1-4/seqinr/man/m16j.Rd                                |only
 seqinr-1.1-4/seqinr/man/modifylist.Rd                          |only
 seqinr-1.1-4/seqinr/man/parser.socket.Rd                       |only
 seqinr-1.1-4/seqinr/man/plot.SeqAcnucWeb.Rd                    |   21 
 seqinr-1.1-4/seqinr/man/prettyseq.Rd                           |only
 seqinr-1.1-4/seqinr/man/print.SeqAcnucWeb.Rd                   |only
 seqinr-1.1-4/seqinr/man/prochlo.Rd                             |   69 
 seqinr-1.1-4/seqinr/man/query.Rd                               |   20 
 seqinr-1.1-4/seqinr/man/read.alignment.Rd                      |   17 
 seqinr-1.1-4/seqinr/man/read.fasta.Rd                          |   64 
 seqinr-1.1-4/seqinr/man/readfirstrec.Rd                        |    9 
 seqinr-1.1-4/seqinr/man/readsmj.Rd                             |    8 
 seqinr-1.1-4/seqinr/man/rearranged.oriloc.Rd                   |    6 
 seqinr-1.1-4/seqinr/man/residuecount.Rd                        |only
 seqinr-1.1-4/seqinr/man/s2c.Rd                                 |   10 
 seqinr-1.1-4/seqinr/man/savelist.Rd                            |only
 seqinr-1.1-4/seqinr/man/seqinr-package.Rd                      |    2 
 seqinr-1.1-4/seqinr/man/setlistname.Rd                         |only
 seqinr-1.1-4/seqinr/man/tablecode.Rd                           |    8 
 seqinr-1.1-4/seqinr/man/uco.Rd                                 |    2 
 seqinr-1.1-4/seqinr/man/waterabs.Rd                            |only
 seqinr-1.1-4/seqinr/man/zscore.Rd                              |   10 
 seqinr-1.1-4/seqinr/src/getzlibsock.c                          |   12 
 144 files changed, 4474 insertions(+), 2645 deletions(-)
More information about seqinr at CRAN
Permanent link

Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.