Fri, 30 May 2008

New package msBreast with initial version 1.0.1
Package: msBreast
Type: Package
Title: Protein Mass Spectra Dataset from a Breast Cancer Study
Version: 1.0.1
Date: Fri Apr 18 14:56:25 PDT 2008
Author: Lixin Gong, William Constantine, and Yu Alex Chen
Maintainer: Lixin Gong
Depends: R (>= 2.5.0), RSQLite
DependsSplus:
Suggests: msProcess
Description: This package provides a dataset of 96 protein mass spectra generated from a pooled sample of nipple aspirate fluid (NAF) from healthy breasts and breasts with cancer.
License: GNU General Public License Version 2
Copyright: 2007-2008 Insightful Corporation. All rights reserved.
URL: http://www.insightful.com/services/research/proteome/default.asp
Packaged: Thu May 29 14:39:36 2008; lgong

More information about msBreast at CRAN
Permanent link

New package msDilution with initial version 1.0.1
Package: msDilution
Type: Package
Title: Protein Mass Spectra Dataset from a Dilution Experiment
Version: 1.0.1
Date: Fri Apr 18 14:54:53 PDT 2008
Author: Lixin Gong, William Constantine, and Yu Alex Chen
Maintainer: Lixin Gong
Depends: R (>= 2.5.0), RSQLite
DependsSplus:
Suggests: msProcess
Description: This package provides a dataset of 280 MALDI-TOF mass spectra generated from a dilution experiment aimed at elucidating which features in MALDI-TOF mass spectrometry data are informative for quantifying peptide content.
License: GNU General Public License Version 2
Copyright: 2007-2008 Insightful Corporation. All rights reserved.
URL: http://www.insightful.com/services/research/proteome/default.asp
Packaged: Thu May 29 14:43:07 2008; lgong

More information about msDilution at CRAN
Permanent link

Package emu updated to version 3.2 with previous version 3.1 dated 2008-05-13

Author: Jonathan Harrington and others, IPS LMU Muenchen & IPDS CAU Kiel
Title: Interface to the Emu Speech Database System
Description: Provides an interface to the Emu speech database system and many special purpose functions for display and analysis of speech data.

Diff between emu versions 3.1 dated 2008-05-13 and 3.2 dated 2008-05-30

 DESCRIPTION   |    4 ++--
 R/AAoptions.S |    2 +-
 R/emu.track.S |    6 ++++--
 3 files changed, 7 insertions(+), 5 deletions(-)

More information about emu at CRAN
Permanent link

Package dtw updated to version 1.6-2 with previous version 1.5-3 dated 2008-02-22

Author: Toni Giorgino , Paolo Tormene
Title: Dynamic Time Warping algorithms
Description: Comprehensive implementation of Dynamic Time Warping algorithms in R. DTW finds the optimal (least cumulative distance) mapping between two time series. This package implements all common DTW variants, including local and global constraints, arbitrary timeseries lenghts, distance definitions, etc. Methods provides cumulative distance, warping functions, plots, etc.

Diff between dtw versions 1.5-3 dated 2008-02-22 and 1.6-2 dated 2008-05-30

 DESCRIPTION        |    6 ++---
 R/backtrack.R      |   10 ++++----
 R/dtw.R            |   30 +++++++++++++++----------
 R/plot.dtw.R       |   62 +++++++++++++++++++++++++++++++++++------------------
 inst/ChangeLog     |    6 ++++-
 man/dtw.Rd         |   29 ++++++++++++++++++++----
 man/stepPattern.Rd |   28 +++++++++++------------
 7 files changed, 110 insertions(+), 61 deletions(-)

More information about dtw at CRAN
Permanent link

New package SDDA with initial version 1.0-0
Package: SDDA
Date: 2008-5-30
Title: Stepwise Diagonal Discriminant Analysis
Version: 1.0-0
Author: CSIRO Bioinformatics, Glenn Stone
Description: Stepwsie Diagonal Discriminant Analysis - a fast algorithm for building multivariate classifiers
Maintainer: David Clifford
License: file LICENSE
Packaged: Fri May 30 13:46:51 2008; cli065

More information about SDDA at CRAN
Permanent link

New package PtProcess with initial version 3.0-0
Package: PtProcess
Version: 3.0-0
Date: 2008-05-26
Title: Time Dependent Point Process Modelling
Author: David Harte
Maintainer: David Harte
Description: This package fits and analyses time dependent marked point process models with an emphasis on earthquake modelling. For a more detailed introduction to the package, see the topic "PtProcess". A list of recent changes can be found in the topic "Changes".
License: GPL (>=2)
URL: http://www.statsresearch.co.nz/software.html
Packaged: Mon May 26 11:38:54 2008; david

More information about PtProcess at CRAN
Permanent link

Package PBSmodelling updated to version 1.63 with previous version 1.61 dated 2007-10-10

Author: Jon T. Schnute , Alex Couture-Beil , and Rowan Haigh
Title: PBS Modelling
Description: PBS Modelling provides software to facilitate the design, testing, and operation of computer models. It focuses particularly on tools that make it easy to construct and edit a customized graphical user interface (GUI). Although it depends heavily on the R interface to the Tcl/Tk package, a user does not need to know Tcl/Tk. The package contains examples that illustrate models built with other R packages, including PBS Mapping, odesolve, ddesolvem, and BRugs. It also serves as a convenient prototype for building new R packages, along with instructions and batch files to facilitate that process. The R directory '../library/PBSmodelling/doc' includes a complete user guide PBSmodelling-UG.pdf. To use this package effectively, please consult the guide.

Diff between PBSmodelling versions 1.61 dated 2007-10-10 and 1.63 dated 2008-05-30

 PBSmodelling-1.61/PBSmodelling/ChangeLog.txt               |only
 PBSmodelling-1.61/PBSmodelling/inst/PBSmodelling-UG.pdf    |only
 PBSmodelling-1.61/PBSmodelling/inst/developers             |only
 PBSmodelling-1.63/PBSmodelling/DESCRIPTION                 |   16 -
 PBSmodelling-1.63/PBSmodelling/R/supportFuns.r             |  139 ++++++++-----
 PBSmodelling-1.63/PBSmodelling/R/zzz.r                     |   10 
 PBSmodelling-1.63/PBSmodelling/inst/PBStools/00ReadMe.txt  |    4 
 PBSmodelling-1.63/PBSmodelling/inst/PBStools/RmakePDF.bat  |    2 
 PBSmodelling-1.63/PBSmodelling/inst/PBStools/RmakePDF2.bat |    2 
 PBSmodelling-1.63/PBSmodelling/inst/doc                    |only
 PBSmodelling-1.63/PBSmodelling/man/PBSmodelling.Rd         |    4 
 PBSmodelling-1.63/PBSmodelling/man/createWin.Rd            |    4 
 PBSmodelling-1.63/PBSmodelling/man/openFile.Rd             |   35 +--
 PBSmodelling-1.63/PBSmodelling/man/showHelp.Rd             |only
 PBSmodelling-1.63/PBSmodelling/man/testWidgets.Rd          |    3 
 PBSmodelling-1.63/PBSmodelling/man/view.Rd                 |   18 +
 PBSmodelling-1.63/PBSmodelling/man/writeList.Rd            |    4 
 17 files changed, 145 insertions(+), 96 deletions(-)

More information about PBSmodelling at CRAN
Permanent link

Package Amelia updated to version 1.1-29 with previous version 1.1-23 dated 2007-03-25

Author: James Honaker , Gary King , Matthew Blackwell
Title: Amelia II: A Program for Missing Data
Description: Amelia II "multiply imputes" missing data in a single cross-section (such as a survey), from a time series (like variables collected for each year in a country), or from a time-series-cross-sectional data set (such as collected by years for each of several countries). Amelia II implements our bootstrapping-based algorithm that gives essentially the same answers as the standard IP or EMis approaches, is usually considerably faster than existing approaches and can handle many more variables. Unlike Amelia I and other statistically rigorous imputation software, it virtually never crashes (but please let us know if you find to the contrary!). The program also generalizes existing approaches by allowing for trends in time series across observations within a cross-sectional unit, as well as priors that allow experts to incorporate beliefs they have about the values of missing cells in their data. Amelia II also includes useful diagnostics of the fit of multiple imputation models. The program works from the R command line or via a graphical user interface that does not require users to know R.

Diff between Amelia versions 1.1-23 dated 2007-03-25 and 1.1-29 dated 2008-05-30

 Amelia-1.1-23/Amelia/inst/tklibs/tkTable   |only
 Amelia-1.1-23/Amelia/windows               |only
 Amelia-1.1-29/Amelia/DESCRIPTION           |    9 
 Amelia-1.1-29/Amelia/R/amcheck.r           |   70 
 Amelia-1.1-29/Amelia/R/ameliagui.r         |    5 
 Amelia-1.1-29/Amelia/R/diag.r              |  189 +
 Amelia-1.1-29/Amelia/R/emb.r               |  198 +
 Amelia-1.1-29/Amelia/R/prep.r              |  181 +
 Amelia-1.1-29/Amelia/inst/doc/amelia.aux   |    9 
 Amelia-1.1-29/Amelia/inst/doc/amelia.bbl   |    6 
 Amelia-1.1-29/Amelia/inst/doc/amelia.blg   |   62 
 Amelia-1.1-29/Amelia/inst/doc/amelia.log   |  108 
 Amelia-1.1-29/Amelia/inst/doc/amelia.pdf   | 3239 ++++++++++++++---------------
 Amelia-1.1-29/Amelia/inst/doc/index.shtml  |    2 
 Amelia-1.1-29/Amelia/man/am-internal.Rd    |    4 
 Amelia-1.1-29/Amelia/man/amelia.Rd         |   22 
 Amelia-1.1-29/Amelia/man/combine.output.Rd |only
 17 files changed, 2257 insertions(+), 1847 deletions(-)

More information about Amelia at CRAN
Permanent link


Built and running on Debian GNU/Linux using R, littler and blosxom. Styled with Bootstrap.