Author: Michael Hahsler, Christian Buchta, Bettina Gruen and Kurt Hornik
Title: Mining Association Rules and Frequent Itemsets
Description: Provides the infrastructure for representing,
manipulating and analyzing transaction data and patterns (frequent
itemsets and association rules). Also provides interfaces to
C implementations of the association mining algorithms Apriori and Eclat
by C. Borgelt.
Diff between arules versions 0.6-5 dated 2008-04-27 and 0.6-6 dated 2008-06-11
DESCRIPTION | 8 NAMESPACE | 5 R/AllClasses.R | 26 R/AllGenerics.R | 10 R/Matrix.R | 11 R/apriori.R | 10 R/associations.R | 15 R/control.R | 2 R/coverage.R | 13 R/dissimilarity.R | 30 R/eclat.R | 10 R/image.R |only R/interestMeasures.R | 286 +- R/is.closed.R | 2 R/is.superset.R | 15 R/itemMatrix.R | 19 R/itemsets.R | 33 R/parameter.R | 2 R/ruleInduction.R | 10 R/rules.R | 43 R/subset.R | 15 R/support.R | 30 R/tidLists.R | 9 R/transactions.R | 10 inst/CITATION | 8 inst/doc/Rplots.pdf |only inst/doc/arules-019.pdf | 4 inst/doc/arules-035.eps |only inst/doc/arules-035.pdf |only inst/doc/arules-037.eps |only inst/doc/arules-037.pdf |only inst/doc/arules-epub.pdf | 4 inst/doc/arules.Rnw | 82 inst/doc/arules.aux | 157 - inst/doc/arules.bib | 27 inst/doc/arules.log | 89 inst/doc/arules.out | 7 inst/doc/arules.pdf | 5446 ++++++++++++++++++++++--------------------- inst/doc/arules.tex | 139 - man/AScontrol-class.Rd | 2 man/WRITE.Rd | 2 man/associations-class.Rd | 17 man/coverage.Rd | 8 man/dissimilarity.Rd | 1 man/interestMeasure.Rd | 81 man/random.transactions.Rd | 6 man/ruleInduction.Rd | 1 man/support.Rd | 24 man/tidLists-class.Rd | 4 src/matrix.c | 102 src/reclat.c | 3 tests/associations.Rout.save | 9 tests/extract.R | 2 tests/extract.Rout.save | 11 tests/interfaces.Rout.save | 15 tests/matrix.R |only tests/matrix.Rout.save |only tests/measures.R | 40 tests/measures.Rout.save | 324 ++ tests/sets.Rout.save | 3 tests/transactions.Rout.save | 3 61 files changed, 4044 insertions(+), 3191 deletions(-)
Author: Stephen Milborrow
derived from mda:mars by Trevor Hastie and Rob Tibshirani.
Title: Multivariate Adaptive Regression Spline Models
Description: Build regression models using the techniques in Friedman's
papers "Fast MARS" and "Multivariate Adaptive Regression Splines".
(The term "MARS" is copyrighted and thus not used in the name of the package.)
Diff between earth versions 2.0-0 dated 2008-06-08 and 2.0-1 dated 2008-06-11
DESCRIPTION | 4 NEWS | 5 R/earth.R | 48 +++-- R/evimp.R | 2 man/earth.Rd | 70 +++++-- man/evimp.Rd | 16 - src/allowed.c | 51 ++++- src/allowed.h | 3 src/earth.c | 3 src/earth.h | 3 src/tests/test.earth.full.R | 117 +++++++++--- src/tests/test.earth.full.Rout.save | 338 +++++++++++++++++------------------- src/tests/test.earth.glm.Rout.save | 18 - 13 files changed, 413 insertions(+), 265 deletions(-)
Author: Wei Dai, Robert Brown, Jim Paul
Title: Methylation Linear Discriminant Analysis (MLDA)
Description: MLDA is a method to identify the differentially methylated loci on CpG island array using Differential Methylation Hybridisation(DMH).
Diff between MLDA versions 1.0 dated 2008-06-11 and 1.0-1 dated 2008-06-11
MLDA-1.0-1/MLDA/DESCRIPTION | 10 +++++----- MLDA-1.0-1/MLDA/man/MLDA-package.Rd | 20 ++++++++++++-------- MLDA-1.0-1/MLDA/man/cutoff.Rd | 5 +++-- MLDA-1.0-1/MLDA/man/list.compare.Rd | 8 ++++---- MLDA-1.0-1/MLDA/man/mlda.Rd | 6 +++--- MLDA-1.0-1/MLDA/man/mlda.data.Rd | 16 +++++++++++----- MLDA-1.0-1/MLDA/man/mlda.sig.Rd | 4 ++-- MLDA-1.0-1/MLDA/man/mlda.sig.plot.Rd | 3 ++- MLDA-1.0-1/MLDA/man/score.cal.Rd | 20 ++++++++++---------- MLDA-1.0/MLDA/Read-and-delete-me |only 10 files changed, 52 insertions(+), 40 deletions(-)
Author: Jari Oksanen, Roeland Kindt, Pierre Legendre, Bob O'Hara, Gavin L. Simpson,
M. Henry H. Stevens, Helene Wagner
Title: Community Ecology Package
Description: Ordination methods, diversity analysis and other
functions for community and vegetation ecologists.
Diff between vegan versions 1.13-0 dated 2008-05-21 and 1.13-1 dated 2008-06-11
vegan-1.13-0/vegan/R/plot.mso.R |only vegan-1.13-1/vegan/DESCRIPTION | 8 vegan-1.13-1/vegan/R/adonis.R | 19 vegan-1.13-1/vegan/R/alias.cca.R | 2 vegan-1.13-1/vegan/R/calibrate.cca.R | 9 vegan-1.13-1/vegan/R/cca.default.R | 8 vegan-1.13-1/vegan/R/extractAIC.cca.R | 2 vegan-1.13-1/vegan/R/factorfit.R | 1 vegan-1.13-1/vegan/R/inertcomp.R | 2 vegan-1.13-1/vegan/R/intersetcor.R | 2 vegan-1.13-1/vegan/R/lines.spantree.R | 2 vegan-1.13-1/vegan/R/mso.R | 16 vegan-1.13-1/vegan/R/msoplot.R |only vegan-1.13-1/vegan/R/ordicluster.R | 1 vegan-1.13-1/vegan/R/ordiellipse.R | 1 vegan-1.13-1/vegan/R/ordispider.R | 4 vegan-1.13-1/vegan/R/ordisurf.R | 1 vegan-1.13-1/vegan/R/orglspider.R | 1 vegan-1.13-1/vegan/R/permutest.betadisper.R | 2 vegan-1.13-1/vegan/R/permutest.cca.R | 2 vegan-1.13-1/vegan/R/predict.cca.R | 3 vegan-1.13-1/vegan/R/predict.rda.R | 3 vegan-1.13-1/vegan/R/print.cca.R | 67 - vegan-1.13-1/vegan/R/print.mso.R |only vegan-1.13-1/vegan/R/rda.default.R | 8 vegan-1.13-1/vegan/R/taxa2dist.R | 1 vegan-1.13-1/vegan/R/vectorfit.R | 1 vegan-1.13-1/vegan/data/mite.xy.rda |only vegan-1.13-1/vegan/inst/ChangeLog | 29 vegan-1.13-1/vegan/inst/NEWS | 62 + vegan-1.13-1/vegan/inst/doc/FAQ-vegan.pdf |binary vegan-1.13-1/vegan/inst/doc/decision-vegan.pdf | 1426 ++++++++++++------------ vegan-1.13-1/vegan/inst/doc/decision-vegan.tex | 16 vegan-1.13-1/vegan/inst/doc/diversity-vegan.pdf |binary vegan-1.13-1/vegan/inst/doc/diversity-vegan.tex | 55 vegan-1.13-1/vegan/inst/doc/intro-vegan.pdf |binary vegan-1.13-1/vegan/inst/doc/intro-vegan.tex | 52 vegan-1.13-1/vegan/man/adonis.Rd | 37 vegan-1.13-1/vegan/man/cca.object.Rd | 5 vegan-1.13-1/vegan/man/mite.Rd | 5 vegan-1.13-1/vegan/man/mso.Rd | 27 41 files changed, 1027 insertions(+), 853 deletions(-)
Author: Jeffrey A. Ryan
Title: Quantitative Financial Modelling Framework
Description: Specify, build, trade, and analyse quantitative financial trading strategies
Diff between quantmod versions 0.3-4 dated 2008-04-14 and 0.3-6 dated 2008-06-11
quantmod-0.3-4/quantmod/man/addTA.Rd |only quantmod-0.3-4/quantmod/man/breakpoints.Rd |only quantmod-0.3-4/quantmod/man/minutes.Rd |only quantmod-0.3-4/quantmod/man/ndays.Rd |only quantmod-0.3-4/quantmod/man/weekdays.zoo.Rd |only quantmod-0.3-4/quantmod/man/weeks.Rd |only quantmod-0.3-6/quantmod/CHANGES | 14 quantmod-0.3-6/quantmod/DESCRIPTION | 9 quantmod-0.3-6/quantmod/NAMESPACE | 54 +- quantmod-0.3-6/quantmod/R/OHLC.transformations.R | 41 +- quantmod-0.3-6/quantmod/R/addTA.R | 336 +++++++++++++++-- quantmod-0.3-6/quantmod/R/chartSeries.R | 393 ++++++++++---------- quantmod-0.3-6/quantmod/R/chartSeries.chob.R | 134 ++++-- quantmod-0.3-6/quantmod/R/chob.R | 5 quantmod-0.3-6/quantmod/R/dropTA.R | 20 - quantmod-0.3-6/quantmod/R/getDividends.R | 2 quantmod-0.3-6/quantmod/R/getFinancials.R | 6 quantmod-0.3-6/quantmod/R/getQuote.R | 194 +++++++-- quantmod-0.3-6/quantmod/R/getSymbols.R | 52 ++ quantmod-0.3-6/quantmod/R/loadSymbols.R |only quantmod-0.3-6/quantmod/R/newTA.R |only quantmod-0.3-6/quantmod/R/periodReturn.R | 62 ++- quantmod-0.3-6/quantmod/R/reChart.R |only quantmod-0.3-6/quantmod/R/zoomChart.R |only quantmod-0.3-6/quantmod/R/zzz.R | 2 quantmod-0.3-6/quantmod/WISHLIST | 9 quantmod-0.3-6/quantmod/man/Delt.Rd | 4 quantmod-0.3-6/quantmod/man/OHLC.Transformations.Rd | 5 quantmod-0.3-6/quantmod/man/TA.Rd |only quantmod-0.3-6/quantmod/man/addBBands.Rd | 2 quantmod-0.3-6/quantmod/man/chartSeries.Rd | 37 + quantmod-0.3-6/quantmod/man/chob-class.Rd | 5 quantmod-0.3-6/quantmod/man/getQuote.Rd | 39 + quantmod-0.3-6/quantmod/man/internal-quantmod.Rd |only quantmod-0.3-6/quantmod/man/newTA.Rd |only quantmod-0.3-6/quantmod/man/periodReturn.Rd | 55 +- quantmod-0.3-6/quantmod/man/quantmod-class.Rd | 13 quantmod-0.3-6/quantmod/man/quantmod-package.Rd | 7 quantmod-0.3-6/quantmod/man/zoomChart.Rd | 11 39 files changed, 1091 insertions(+), 420 deletions(-)
Author: John Verzani
Title: Toolkit implementation of gWidgets for rJava
Description: Port of gWidgets API to the rJava interface between R and Java.
Diff between gWidgetsrJava versions 0.0-11 dated 2008-05-06 and 0.0-12 dated 2008-06-11
DESCRIPTION | 4 ++-- man/gWidgetsrJava-undocumented.Rd | 35 +++++++++++++++++++++++++++++++++++ 2 files changed, 37 insertions(+), 2 deletions(-)
Author: Michael Lawrence, John Verzani
Title: Toolkit implementation of gWidgets for RGtk2
Description: Port of gWidgets API to RGtk2
Diff between gWidgetsRGtk2 versions 0.0-34 dated 2008-05-19 and 0.0-35 dated 2008-06-11
ChangeLog | 5 DESCRIPTION | 6 - NAMESPACE | 30 +++-- NEWS | 5 R/aaaGenerics.R | 228 +++++++++++++++++++------------------- man/gWidgetsRGtk2-undocumented.Rd | 29 ++++ 6 files changed, 176 insertions(+), 127 deletions(-)
Author: John Verzani. Based on the iwidgets code of Simon Urbanek and suggestions by Simon Urbanek, Philippe Grosjean and Michael Lawrence
Title: gWidgets API for building toolkit-independent, interactive GUIs
Description: gWidgets provides a toolkit-independent API for building interactive GUIs. Atleast one of the gWidgetsXXX packages, such as gWidgetstcltk, needs to be installed. Some icons are on loan from the scigraphica project http://scigraphica.sourceforge.net.
Diff between gWidgets versions 0.0-27 dated 2008-04-24 and 0.0-28 dated 2008-06-11
ChangeLog | 13 DESCRIPTION | 4 R/aaaGenerics.R | 8 R/ghelp.R | 11 TODO.txt | 2 inst/doc/addingToolkit.log | 22 - inst/doc/addingToolkit.pdf |binary inst/doc/gWidgets.log | 22 - inst/doc/gWidgets.pdf | 685 ++++++++++++++++++++++----------------------- inst/tests |only man/gWidgets-handlers.Rd | 7 man/ghtml.Rd | 14 12 files changed, 404 insertions(+), 384 deletions(-)
Author: Max Kuhn, Steve Weston
Title: Classification and Regression Training in Parallel Using NetworkSpaces
Description: Augment some caret functions using parallel processing
Diff between caretNWS versions 0.16 dated 2008-01-14 and 0.19 dated 2008-06-11
DESCRIPTION | 8 +++---- R/trainNWS.R | 53 +++++++++++++++++++++++++++++++++++-------------- R/trainNWSControl.R | 34 ++++++++++++++++--------------- man/trainNWS.Rd | 3 +- man/trainNWSControl.Rd | 16 ++++++++------ 5 files changed, 71 insertions(+), 43 deletions(-)
Author: Max Kuhn, Nathan Coulter
Title: Classification and Regression Training LSF Style
Description: Augment some caret functions for parallel processing
Diff between caretLSF versions 1.14 dated 2008-03-28 and 1.16 dated 2008-06-11
caretLSF-1.14/caretLSF/inst |only caretLSF-1.16/caretLSF/DESCRIPTION | 10 ++-- caretLSF-1.16/caretLSF/R/trainLSF.R | 63 +++++++++++++++++--------- caretLSF-1.16/caretLSF/R/trainLSFControl.R | 46 +++++++++--------- caretLSF-1.16/caretLSF/man/trainLSF.Rd | 18 ++++--- caretLSF-1.16/caretLSF/man/trainLSFControl.Rd | 22 ++++----- 6 files changed, 96 insertions(+), 63 deletions(-)
Author: Max Kuhn. Contributions from Jed Wing, Steve Weston and Andre Williams
Title: Classification and Regression Training
Description: Misc functions for training and plotting classification and regression models
Diff between caret versions 3.16 dated 2008-03-28 and 3.21 dated 2008-06-11
DESCRIPTION | 12 NAMESPACE | 140 ++++---- R/confusionMatrix.R | 117 +++--- R/createGrid.R | 274 ++++++++------- R/createModel.R | 30 + R/earthVarImp.R | 73 ++-- R/misc.R | 33 + R/plot.train.R | 28 - R/predictionFunction.R | 810 +++++++++++++++++++++++------------------------ R/print.train.R | 270 ++++++++------- R/probFunction.R | 335 +++++++++---------- R/selection.R |only R/train.default.R | 392 ++++++++++++---------- R/trainControl.R | 29 - inst/doc/caretMisc.Rnw | 1 inst/doc/caretMisc.pdf | 644 ++++++++++++++++++------------------- inst/doc/caretMisc.tex |only inst/doc/caretTrain.Rnw | 33 + inst/doc/caretTrain.pdf |binary inst/doc/caretTrain.tex |only inst/doc/caretVarImp.Rnw | 16 inst/doc/caretVarImp.pdf |binary inst/doc/caretVarImp.tex |only man/createGrid.Rd | 17 man/filterVarImp.Rd | 2 man/selection.Rd |only man/train.Rd | 11 man/trainControl.Rd | 2 man/varImp.Rd | 51 +- 29 files changed, 1743 insertions(+), 1577 deletions(-)
Author: Yihui Xie
Title: Demonstrate Animations in Statistics
Description: This package consists of various functions for animations in statistics, covering many areas such as probability theory, mathematical statistics, multivariate statistics, nonparametric statistics, sampling survey, linear models, time series, computational statistics, data mining and machine learning. These functions might be of help in teaching statistics and data analysis.
Diff between animation versions 0.2-0 dated 2008-04-14 and 1.0-0 dated 2008-06-11
animation-0.2-0/animation/R/ani.control.R |only animation-0.2-0/animation/R/checkargs.r |only animation-0.2-0/animation/R/savePNG.R |only animation-0.2-0/animation/inst/doc/CLT.pdf |only animation-0.2-0/animation/inst/doc/Rplots.ps |only animation-0.2-0/animation/inst/doc/animation.Rnw |only animation-0.2-0/animation/inst/doc/animation.pdf |only animation-0.2-0/animation/inst/doc/bib.bib |only animation-0.2-0/animation/inst/doc/bisection.pdf |only animation-0.2-0/animation/inst/doc/bootiid.pdf |only animation-0.2-0/animation/inst/doc/brownian.pdf |only animation-0.2-0/animation/inst/doc/buffon.pdf |only animation-0.2-0/animation/inst/doc/buffonprob.pdf |only animation-0.2-0/animation/inst/doc/cluster.pdf |only animation-0.2-0/animation/inst/doc/coin.pdf |only animation-0.2-0/animation/inst/doc/confint.pdf |only animation-0.2-0/animation/inst/doc/crossvalidation.pdf |only animation-0.2-0/animation/inst/doc/graddesc.pdf |only animation-0.2-0/animation/inst/doc/gridillusion.pdf |only animation-0.2-0/animation/inst/doc/kmeans.pdf |only animation-0.2-0/animation/inst/doc/kmeansframe.pdf |only animation-0.2-0/animation/inst/doc/knn.pdf |only animation-0.2-0/animation/inst/doc/lln.pdf |only animation-0.2-0/animation/inst/doc/mwar.pdf |only animation-0.2-0/animation/inst/doc/newton.pdf |only animation-0.2-0/animation/inst/doc/srswor.pdf |only animation-0.2-0/animation/inst/doc/strat.pdf |only animation-0.2-0/animation/inst/doc/system.pdf |only animation-0.2-0/animation/man/ani.control.Rd |only animation-0.2-0/animation/man/savePNG.Rd |only animation-1.0-0/animation/DESCRIPTION | 8 animation-1.0-0/animation/R/ani.options.R |only animation-1.0-0/animation/R/ani.start.R | 34 -- animation-1.0-0/animation/R/ani.stop.R | 74 ++--- animation-1.0-0/animation/R/bisection.method.R | 41 +-- animation-1.0-0/animation/R/boot.iid.R | 47 +-- animation-1.0-0/animation/R/brownian.motion.R | 19 - animation-1.0-0/animation/R/buffon.needle.R | 65 ++--- animation-1.0-0/animation/R/clt.ani.R | 36 +- animation-1.0-0/animation/R/conf.int.R | 41 +-- animation-1.0-0/animation/R/cv.ani.R | 40 +-- animation-1.0-0/animation/R/cv.nfeaturesLDA.R | 59 ++-- animation-1.0-0/animation/R/flip.coin.R | 26 -- animation-1.0-0/animation/R/grad.desc.R | 13 - animation-1.0-0/animation/R/kmeans.ani.R | 64 ++--- animation-1.0-0/animation/R/knn.ani.R | 140 +++++----- animation-1.0-0/animation/R/lln.ani.R | 26 -- animation-1.0-0/animation/R/mwar.ani.R | 57 ++-- animation-1.0-0/animation/R/newton.method.R | 47 ++- animation-1.0-0/animation/R/sample.cluster.R | 40 +-- animation-1.0-0/animation/R/sample.simple.R | 28 -- animation-1.0-0/animation/R/sample.strat.R | 40 +-- animation-1.0-0/animation/R/sample.system.R | 28 -- animation-1.0-0/animation/R/vi.lilac.chaser.R | 23 - animation-1.0-0/animation/inst/NEWS | 60 +++- animation-1.0-0/animation/inst/doc/index.html |only animation-1.0-0/animation/inst/js/ANI.css | 83 ++++-- animation-1.0-0/animation/inst/js/FUN.js | 217 +++++++++++++---- animation-1.0-0/animation/man/ani.news.Rd | 4 animation-1.0-0/animation/man/ani.options.Rd |only animation-1.0-0/animation/man/ani.start.Rd | 28 -- animation-1.0-0/animation/man/ani.stop.Rd | 26 -- animation-1.0-0/animation/man/animation-package.Rd | 25 + animation-1.0-0/animation/man/bisection.method.Rd | 27 +- animation-1.0-0/animation/man/boot.iid.Rd | 55 +++- animation-1.0-0/animation/man/brownian.motion.Rd | 42 +-- animation-1.0-0/animation/man/buffon.needle.Rd | 46 ++- animation-1.0-0/animation/man/clt.ani.Rd | 35 +- animation-1.0-0/animation/man/conf.int.Rd | 28 +- animation-1.0-0/animation/man/cv.ani.Rd | 37 ++ animation-1.0-0/animation/man/cv.nfeaturesLDA.Rd | 57 +++- animation-1.0-0/animation/man/flip.coin.Rd | 31 +- animation-1.0-0/animation/man/grad.desc.Rd | 27 +- animation-1.0-0/animation/man/highlight.def.Rd | 2 animation-1.0-0/animation/man/kmeans.ani.Rd | 68 +++-- animation-1.0-0/animation/man/knn.ani.Rd | 62 ++-- animation-1.0-0/animation/man/lln.ani.Rd | 32 +- animation-1.0-0/animation/man/mwar.ani.Rd | 34 +- animation-1.0-0/animation/man/newton.method.Rd | 36 ++ animation-1.0-0/animation/man/sample.cluster.Rd | 27 +- animation-1.0-0/animation/man/sample.simple.Rd | 30 +- animation-1.0-0/animation/man/sample.strat.Rd | 30 +- animation-1.0-0/animation/man/sample.system.Rd | 27 +- animation-1.0-0/animation/man/tidy.source.Rd | 3 animation-1.0-0/animation/man/vi.grid.illusion.Rd | 6 animation-1.0-0/animation/man/vi.lilac.chaser.Rd | 31 +- 86 files changed, 1306 insertions(+), 906 deletions(-)
Author: David A. James
Title: SQLite interface for R
Description: Database Interface R driver for SQLite.
This package embeds the SQLite database engine in R and
provides an interface compliant with the DBI package.
The source for the SQLite engine (version 3.4.1) is included.
Diff between RSQLite versions 0.6-8 dated 2008-02-27 and 0.6-9 dated 2008-06-11
RSQLite-0.6-8/RSQLite/._DESCRIPTION |only RSQLite-0.6-8/RSQLite/._configure.in |only RSQLite-0.6-8/RSQLite/R/._SQLiteSupport.R |only RSQLite-0.6-8/RSQLite/inst/UnitTests/._result_set_closing_test.R |only RSQLite-0.6-8/RSQLite/src/._RS-DBI.h |only RSQLite-0.6-9/RSQLite/DESCRIPTION | 4 ++-- RSQLite-0.6-9/RSQLite/src/RS-DBI.h | 3 ++- 7 files changed, 4 insertions(+), 3 deletions(-)