Package: SNPMaP
Type: Package
Title: SNP Microarrays and Pooling in R
Version: 1.0.2
Date: 2008-06-24
Author: Oliver SP Davis, Leo C Schalkwyk
Maintainer: Oliver SP Davis
Description: Pooling DNA on SNP microarrays is a cost-effective way to carry out genome-wide association studies for heritable disorders or traits. The SNPMaP package provides formal SNPMaP objects and methods in R as a base for these analyses using Affymetrix genotyping arrays.
License: GPL (>= 3)
LazyLoad: yes
LazyData: yes
Depends: methods, SNPMaP.cdm, affxparser, R.huge, R.utils, R (>= 2.4.0)
Packaged: Tue Jun 24 16:23:34 2008; spjgosd
More information about SNPMaP at CRAN
posted at: 17:16 | path: /cran/new | permanent link to this entry
Package wgaim updated to version 0.1-1 with previous version 0.1-0 dated 2008-06-24
Author: Julian Taylor
Diff between wgaim versions 0.1-0 dated 2008-06-24 and 0.1-1 dated 2008-07-05
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Package uncompress updated to version 1.3 with previous version 1.21 dated 2008-06-09 Author: Nicholas Vinen
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Package spgrass6 updated to version 0.5-10 with previous version 0.5-9 dated 2008-06-08 Author: Roger Bivand
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Package spdep updated to version 0.4-24 with previous version 0.4-21 dated 2008-05-16 Author: Roger Bivand
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Package sp updated to version 0.9-26 with previous version 0.9-25 dated 2008-04-08 Author: Edzer J. Pebesma
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Package snowfall updated to version 1.52 with previous version 1.51 dated 2008-06-19 Author: Jochen Knaus
Diff between snowfall versions 1.51 dated 2008-06-19 and 1.52 dated 2008-07-05
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Package simecol updated to version 0.5-7 with previous version 0.5-5 dated 2008-04-08 Author: Thomas Petzoldt
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Package robust updated to version 0.3-2 with previous version 0.3-0 dated 2007-03-09 Author: Jeff Wang
Diff between robust versions 0.3-0 dated 2007-03-09 and 0.3-2 dated 2008-07-05
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Package rattle updated to version 2.3.45 with previous version 2.3.8 dated 2008-04-14 Author: Graham Williams
Diff between rattle versions 2.3.8 dated 2008-04-14 and 2.3.45 dated 2008-07-05
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Package prim updated to version 1.0.5 with previous version 1.0.4 dated 2007-09-07 Author: Tarn Duong
Diff between prim versions 1.0.4 dated 2007-09-07 and 1.0.5 dated 2008-07-05
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New package qdg with initial version 1.0.0
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Package pmml updated to version 1.1.9 with previous version 1.1.7 dated 2008-04-22 Author: Graham Williams, Michael Hahsler (arules), Zementis Inc,
Hemant Ishwaran, Udaya B. Kogalur, Rajarshi Guha
Diff between pmml versions 1.1.7 dated 2008-04-22 and 1.1.9 dated 2008-07-05
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Package playwith updated to version 0.9-3 with previous version 0.8-56 dated 2008-06-23 Author: Felix Andrews
Diff between playwith versions 0.8-56 dated 2008-06-23 and 0.9-3 dated 2008-07-05
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New package orloca.es with initial version 1.0
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Package optmatch updated to version 0.4-1 with previous version 0.4-0 dated 2008-05-20 Author: Ben B. Hansen
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Package mvtnorm updated to version 0.9-1 with previous version 0.9-0 dated 2008-04-01 Author: Alan Genz, Frank Bretz and Torsten Hothorn
with contributions by Tetsuhisa Miwa, Xuefei Mi, Friedrich Leisch
and Fabian Scheipl
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Package multcomp updated to version 1.0-2 with previous version 1.0-0 dated 2008-04-01 Author: Torsten Hothorn, Frank Bretz and Peter Westfall with
contributions by Richard M. Heiberger
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Package mombf updated to version 1.0.2 with previous version 1.0.0 dated 2008-04-24 Author: David Rossell
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Package mixPHM updated to version 0.6.2 with previous version 0.6.0 dated 2008-05-26 Author: Patrick Mair, Marcus Hudec
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Package maptools updated to version 0.7-14 with previous version 0.7-13 dated 2008-05-25 Author: Nicholas J. Lewin-Koh and Roger Bivand, contributions by Edzer J. Pebesma, Eric Archer, Stéphane Dray, David Forrest, Patrick Giraudoux, Duncan Golicher, Virgilio Gómez Rubio, Patrick Hausmann, Thomas Jagger, Sebastian P. Luque, Don MacQueen, Andrew Niccolai and Tom Short
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New package lmom with initial version 1.0
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Package ks updated to version 1.5.6 with previous version 1.5.5 dated 2008-03-13 Author: Tarn Duong
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Package laercio updated to version 0.9-3 with previous version 0.9-2 dated 2008-06-23 Author: Laercio Junio da Silva
Diff between laercio versions 0.9-2 dated 2008-06-23 and 0.9-3 dated 2008-07-05
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Package its updated to version 1.1.7 with previous version 1.1.5 dated 2006-12-10 Author: Portfolio & Risk Advisory Group, Commerzbank Securities
Diff between its versions 1.1.5 dated 2006-12-10 and 1.1.7 dated 2008-07-05
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Package homals updated to version 0.9-5 with previous version 0.9-4 dated 2008-04-04 Author: Jan de Leeuw, Patrick Mair
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Package hmm.discnp updated to version 0.0-8 with previous version 0.0-7 dated 2006-08-25 Author: Rolf Turner
Diff between hmm.discnp versions 0.0-7 dated 2006-08-25 and 0.0-8 dated 2008-07-05
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Package gss updated to version 1.0-1 with previous version 1.0-0 dated 2007-08-09 Author: Chong Gu
Diff between gss versions 1.0-0 dated 2007-08-09 and 1.0-1 dated 2008-07-05
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Package gamlss updated to version 1.9-2 with previous version 1.9-0 dated 2008-06-06 Author: Mikis Stasinopoulos
Diff between gamlss versions 1.9-0 dated 2008-06-06 and 1.9-2 dated 2008-07-05
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Package fda updated to version 1.2.4 with previous version 1.2.3 dated 2007-12-06 Author: J. O. Ramsay
Diff between fda versions 1.2.3 dated 2007-12-06 and 1.2.4 dated 2008-07-05
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Package evdbayes updated to version 1.0-7 with previous version 1.0-6 dated 2006-10-19 Author: Alec Stephenson and Mathieu Ribatet.
Diff between evdbayes versions 1.0-6 dated 2006-10-19 and 1.0-7 dated 2008-07-05
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Package earth updated to version 2.0-3 with previous version 2.0-2 dated 2008-06-15 Author: Stephen Milborrow
derived from mda:mars by Trevor Hastie and Rob Tibshirani.
Diff between earth versions 2.0-2 dated 2008-06-15 and 2.0-3 dated 2008-07-05
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Package depmixS4 updated to version 0.2-0 with previous version 0.1-1 dated 2008-06-18 Author: Ingmar Visser
Diff between depmixS4 versions 0.1-1 dated 2008-06-18 and 0.2-0 dated 2008-07-05
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Package crossdes updated to version 1.0-9 with previous version 1.0-8 dated 2008-03-31 Author: Martin Oliver Sailer
Diff between crossdes versions 1.0-8 dated 2008-03-31 and 1.0-9 dated 2008-07-05
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Package colorRamps updated to version 2.2 with previous version 2.1 dated 2008-03-06 Author: Tim Keitt
Diff between colorRamps versions 2.1 dated 2008-03-06 and 2.2 dated 2008-07-05
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Package clinfun updated to version 0.8.2 with previous version 0.8.1 dated 2008-06-18 Author: Venkatraman E. Seshan
Diff between clinfun versions 0.8.1 dated 2008-06-18 and 0.8.2 dated 2008-07-05
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Package aster updated to version 0.7-5 with previous version 0.7-4 dated 2008-03-21 Author: Charles J. Geyer
Diff between aster versions 0.7-4 dated 2008-03-21 and 0.7-5 dated 2008-07-05
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Package ZIGP updated to version 2.3 with previous version 2.1 dated 2008-03-24 Author: Vinzenz Erhardt
Diff between ZIGP versions 2.1 dated 2008-03-24 and 2.3 dated 2008-07-05
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New package SNPMaP.cdm with initial version 1.0.0
More information about SNPMaP.cdm at CRAN
Package RJaCGH updated to version 1.5.3 with previous version 1.2.5 dated 2008-04-22 Author: Oscar Rueda
Diff between RJaCGH versions 1.2.5 dated 2008-04-22 and 1.5.3 dated 2008-07-05
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Package RFreak updated to version 0.2-2 with previous version 0.2-1 dated 2008-05-08 Author: Robin Nunkesser
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Package RFA updated to version 0.0-8 with previous version 0.0-7 dated 2007-04-11 Author: Mathieu Ribatet
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Package R.oo updated to version 1.4.5 with previous version 1.4.2 dated 2008-03-07 Author: Henrik Bengtsson
Diff between R.oo versions 1.4.2 dated 2008-03-07 and 1.4.5 dated 2008-07-05
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Package R.methodsS3 updated to version 1.0.3 with previous version 1.0.1 dated 2008-03-07 Author: Henrik Bengtsson
Diff between R.methodsS3 versions 1.0.1 dated 2008-03-07 and 1.0.3 dated 2008-07-05
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Package PredictiveRegression updated to version 0.1-1 with previous version 0.0-1 dated 2008-06-26 Author: Vladimir Vovk
Diff between PredictiveRegression versions 0.0-1 dated 2008-06-26 and 0.1-1 dated 2008-07-05
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Package POT updated to version 1.0-8 with previous version 1.0-7 dated 2008-04-03 Author: Mathieu Ribatet
Diff between POT versions 1.0-7 dated 2008-04-03 and 1.0-8 dated 2008-07-05
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New package Network with initial version 1.1
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Package GOSim updated to version 1.1.4.0 with previous version 1.1.3.2 dated 2008-05-27 Author: Holger Froehlich
Diff between GOSim versions 1.1.3.2 dated 2008-05-27 and 1.1.4.0 dated 2008-07-05
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New package DiagnosisMed with initial version 0.0.1
More information about DiagnosisMed at CRAN
Title: Whole Genome Average Interval Mapping for QTL detection using mixed models
Description: This package integrates sophisticated mixed modelling methods with a whole genome approach to detecting significant QTL's in linkage maps.
DESCRIPTION | 4 ++--
R/wgaim.R | 31 +++++++++++++++++++------------
man/raccas.Rd | 4 ++--
man/read.interval.Rd | 14 +++++++-------
man/wgaim-package.Rd | 2 +-
man/wgaim.asreml.Rd | 1 -
man/wmerge.Rd | 5 +----
7 files changed, 32 insertions(+), 29 deletions(-)
posted at: 13:19 | path: /cran/updated | permanent link to this entry
Title: Uncompress
Description: This R Add-On provides the function uncompress(raw) for
decompressing .Z files. It returns the decompressed data as a raw
(binary) string. The compressed data is passed in in the same format. It
returns NULL if the input data is invalid.
DESCRIPTION | 4 +-
R/zzz.R | 7 +++
man/rawToLines.Rd |only
man/uncompress.Rd | 10 ++---
man/uncompressToLines.Rd |only
src/uncompress.c | 90 +++++++++++++++++++++++++++++++++++++++++++----
6 files changed, 97 insertions(+), 14 deletions(-)
posted at: 13:19 | path: /cran/updated | permanent link to this entry
Title: Interface between GRASS 6 geographical information system and R
Description: Interpreted interface between GRASS 6 geographical
information system and R, based on starting R from within the GRASS
environment.
ChangeLog | 18 +++++++++++++++
DESCRIPTION | 6 ++---
R/bin_link.R | 28 ++++++++++++++++++++++-
R/vect_link.R | 2 -
R/zzz.R | 66 +++++++++++++++++++++++++++----------------------------
inst/ChangeLog | 18 +++++++++++++++
man/readRAST6.Rd | 4 +--
man/readVECT6.Rd | 8 +++---
man/spgrass6.Rd | 6 ++---
9 files changed, 109 insertions(+), 47 deletions(-)
posted at: 13:19 | path: /cran/updated | permanent link to this entry
Title: Spatial dependence: weighting schemes, statistics and models
Description: A collection of functions to create spatial weights matrix
objects from polygon contiguities, from point patterns by distance and
tesselations, for summarising these objects, and for permitting their
use in spatial data analysis; a collection of tests for spatial
autocorrelation, including global Moran's I, Geary's C, Hubert/Mantel
general cross product statistic, Empirical Bayes estimates and Assunção/Reis
Index, Getis/Ord G and multicoloured join count statistics,
local Moran's I and Getis/Ord G, saddlepoint approximations and exact
tests for global and local Moran's I; and functions for estimating
spatial simultaneous autoregressive (SAR) lag and error models,
weighted and unweighted SAR and CAR spatial regression models,
semi-parametric and Moran eigenvector spatial filtering, GM SAR error
models, and generalized spatial two stage least squares models.
ChangeLog | 46 ++++++++++++++++++++++++++++
DESCRIPTION | 6 +--
R/EBI.R | 3 +
R/droplinks.R | 5 +--
R/edit.nb.R | 11 ++++--
R/error.spsarlm.R | 4 +-
R/kpgm_new.R | 4 +-
R/lag.spsarlm.R | 4 +-
R/listw2Matrix.R | 3 +
R/listw2sn.R | 2 +
R/localmoran.exact.R | 9 +++--
R/moran.exact.R | 49 +++++++++++++++++++++---------
R/moran.exact.alt.R | 13 ++++----
R/mtlocalmoran.R | 3 +
R/nb2listw.R | 74 +++++++++++++++++++++++++++++++++++++++++++++-
R/p.adjustSP.R | 3 +
R/read.gal.R | 3 +
R/spautolm.R | 4 +-
R/subset.nb.R | 5 +--
inst/ChangeLog | 46 ++++++++++++++++++++++++++++
inst/doc/sids.pdf |binary
log_notes |only
man/SpatialFiltering.Rd | 2 -
man/lm.morantest.exact.Rd | 6 +++
man/localmoran.exact.Rd | 9 ++++-
25 files changed, 265 insertions(+), 49 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: classes and methods for spatial data
Description: A package that provides classes and methods for spatial
data. The classes document where the spatial location information
resides, for 2D or 3D data. Utility functions are provided, e.g. for
plotting data as maps, spatial selection, as well as methods for
retrieving coordinates, for subsetting, print, summary, etc.
sp-0.9-25/sp/S |only
sp-0.9-26/sp/ChangeLog | 67
sp-0.9-26/sp/DESCRIPTION | 6
sp-0.9-26/sp/NAMESPACE | 3
sp-0.9-26/sp/R/GridTopology-methods.R | 37
sp-0.9-26/sp/R/image.R | 15
sp-0.9-26/sp/inst/ChangeLog | 67
sp-0.9-26/sp/inst/doc/sp.pdf | 3631 ++++++++++++++++------------------
sp-0.9-26/sp/man/SpatialGrid.Rd | 30
9 files changed, 2014 insertions(+), 1842 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Easier cluster computing (based on snow).
Description: Toplevel wrapper around snow for easier development of
parallel R programs.
All functions work in sequential mode, too, if no cluster is present.
Package is also designed as connector to the cluster management tool
sfCluster, but can also used without it.
DESCRIPTION | 8 ++++----
R/init.R | 15 +++++++++------
R/sysdata.rda |binary
inst/doc/snowfall.pdf |binary
man/snowfall-e-data.Rd | 2 ++
5 files changed, 15 insertions(+), 10 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Simulation of ecological (and other) dynamic systems
Description: Object oriented framework to simulate ecological (and other) dynamic systems
simecol-0.5-5/simecol/R/euler.R |only
simecol-0.5-5/simecol/man/euler.Rd |only
simecol-0.5-7/simecol/DESCRIPTION | 8 ++++----
simecol-0.5-7/simecol/NAMESPACE | 8 ++++----
simecol-0.5-7/simecol/R/aaa_classes.R | 3 ++-
simecol-0.5-7/simecol/R/accessors.R | 10 ++++++++++
simecol-0.5-7/simecol/R/iteration.R | 5 -----
simecol-0.5-7/simecol/R/sim.R | 18 ------------------
simecol-0.5-7/simecol/data/lv.rda |binary
simecol-0.5-7/simecol/data/lv3.rda |binary
simecol-0.5-7/simecol/inst/NEWS | 12 ++++++++++++
simecol-0.5-7/simecol/inst/ToDo.txt |only
simecol-0.5-7/simecol/inst/doc |only
simecol-0.5-7/simecol/inst/examples/logist.R | 2 +-
simecol-0.5-7/simecol/inst/examples/lv.R | 2 +-
simecol-0.5-7/simecol/inst/examples/lv3.R | 2 +-
simecol-0.5-7/simecol/man/fitOdeModel.Rd | 2 +-
simecol-0.5-7/simecol/man/iteration.Rd | 2 +-
simecol-0.5-7/simecol/man/listOrNULL.Rd | 5 +++--
simecol-0.5-7/simecol/man/lv3.Rd | 3 ++-
simecol-0.5-7/simecol/man/parms.Rd | 2 +-
simecol-0.5-7/simecol/man/simecol-package.Rd | 18 ++++++++++--------
simecol-0.5-7/simecol/man/ssqOdeModel.Rd | 2 +-
simecol-0.5-7/simecol/work/compiledModel |only
24 files changed, 54 insertions(+), 50 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Insightful Robust Library
Description: A package of robust methods.
robust-0.3-0/robust/R/fastmcd.q |only
robust-0.3-0/robust/R/rockem.q |only
robust-0.3-0/robust/man/fastmcd.Rd |only
robust-0.3-0/robust/man/rockem.Rd |only
robust-0.3-0/robust/src/fastmcd.f |only
robust-0.3-0/robust/src/regar.f |only
robust-0.3-0/robust/src/rocovm.f |only
robust-0.3-0/robust/src/sfastmcd.c |only
robust-0.3-2/robust/DESCRIPTION | 6 -
robust-0.3-2/robust/R/covRob.control.q | 77 ++++++++++----
robust-0.3-2/robust/R/covRob.q | 155 +++++++++++++++++-------------
robust-0.3-2/robust/R/glmRob.mallows.q | 3
robust-0.3-2/robust/README | 2
robust-0.3-2/robust/allfuns.SSC |only
robust-0.3-2/robust/build |only
robust-0.3-2/robust/man/anova.glmRob.Rd | 12 +-
robust-0.3-2/robust/man/anova.lmRob.Rd | 2
robust-0.3-2/robust/man/covRob.Rd | 79 +++++++++------
robust-0.3-2/robust/man/covRob.control.Rd | 2
robust-0.3-2/robust/man/plot.glmfm.Rd | 2
robust-0.3-2/robust/man/predict.glmRob.Rd | 2
robust-0.3-2/robust/robust.xcodeproj |only
22 files changed, 211 insertions(+), 131 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: A graphical user interface for data mining in R using GTK
Description: Rattle provides a Gnome (RGtk2) based interface to
R functionality for data mining. The aim is to provide
a simple and intuitive interface that allows a user to quickly
load data from a CSV file (or via ODBC), transform and explore the data,
and build and evaluate models, and export models as PMML (predictive
modelling markup language). All of this with knowing little about R.
All R commands are logged and available for the user, as a tool to
then begin interacting directly with R itself, if so desired. Rattle also
exports a number of utility functions and the graphical user interface does
not need to be run to deploy these.
rattle-2.3.45/rattle/DESCRIPTION | 6
rattle-2.3.45/rattle/NAMESPACE | 1
rattle-2.3.45/rattle/R/ada.R | 42
rattle-2.3.45/rattle/R/ada_gui.R | 54
rattle-2.3.45/rattle/R/associate.R | 222 -
rattle-2.3.45/rattle/R/cluster.R | 217 -
rattle-2.3.45/rattle/R/data.R |only
rattle-2.3.45/rattle/R/execute.R | 25
rattle-2.3.45/rattle/R/export.R | 23
rattle-2.3.45/rattle/R/log.R | 69
rattle-2.3.45/rattle/R/model.R | 344 +-
rattle-2.3.45/rattle/R/nnet.R | 197 -
rattle-2.3.45/rattle/R/projects.R | 91
rattle-2.3.45/rattle/R/random_forest.R | 107
rattle-2.3.45/rattle/R/rattle.R | 4659 ++++++++--------------------
rattle-2.3.45/rattle/R/rpart.R | 113
rattle-2.3.45/rattle/R/textview.R | 31
rattle-2.3.45/rattle/R/zzz.R | 27
rattle-2.3.45/rattle/data/audit.RData |binary
rattle-2.3.45/rattle/inst/csv/dvdtrans.csv | 2
rattle-2.3.45/rattle/inst/etc/rattle.glade | 1731 +++-------
rattle-2.3.45/rattle/man/RStat.Rd |only
rattle-2.3.45/rattle/man/genPlotTitleCmd.Rd | 8
rattle-2.3.45/rattle/man/internal.Rd | 11
rattle-2.3.45/rattle/man/rattle.Rd | 22
rattle-2.3.8/rattle/R/paradigm.R |only
26 files changed, 3134 insertions(+), 4868 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Patient Rule Induction Method (PRIM)
Description: PRIM for bump hunting in high-dimensional data
prim-1.0.4/prim/R/prim.thresh.R |only
prim-1.0.4/prim/R/zzz.R |only
prim-1.0.5/prim/DESCRIPTION | 9 -
prim-1.0.5/prim/NAMESPACE | 24 ----
prim-1.0.5/prim/R/boxfun.R | 7 -
prim-1.0.5/prim/R/prim.R | 15 +-
prim-1.0.5/prim/inst/doc/Rplots.ps | 208 +++++++++++++++++------------------
prim-1.0.5/prim/inst/doc/prim-2d.Rnw | 2
prim-1.0.5/prim/inst/doc/prim-2d.log | 197 ++++++++++++++++++++++-----------
prim-1.0.5/prim/inst/doc/prim-2d.pdf |binary
prim-1.0.5/prim/inst/doc/prim-2d.tex | 4
prim-1.0.5/prim/inst/doc/prim-3d.Rnw | 2
prim-1.0.5/prim/inst/doc/prim-3d.log | 191 ++++++++++++++++++++++----------
prim-1.0.5/prim/inst/doc/prim-3d.pdf |binary
prim-1.0.5/prim/inst/doc/prim-3d.tex | 4
prim-1.0.5/prim/man/prim-internal.Rd | 5
16 files changed, 401 insertions(+), 267 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Package: qdg
Type: Package
Title: QTL directed graphs
Version: 1.0.0
Date: 2008-06-27
Author: Elias Chaibub Neto
Maintainer: Elias Chaibub Neto
Description: Infer QTL-directed Dependency Graphs for Phenotype Networks
Depends: pcalg,sem,qtl
LazyLoad: yes
LazyData: yes
License: GPL version 2 or newer
Packaged: Fri Jun 27 10:21:49 2008; yandell
posted at: 13:18 | path: /cran/new | permanent link to this entry
Title: Generate PMML for various models
Description: The Predictive Modelling Markup Language (PMML) is a language
for representing models, in an application independent way. Such models
can then be loaded into other applications supporting PMML, including
ADAPA from Zementis, Teradata Warehouse Miner and IBM's DB2.
The package provides a generic pmml function to generate pmml for an
object. Using a S3 generic function the approriate method for the
class of the supplied object is dispatched.
The package currently supports the export of PMML for linear
regression, SVMs, rpart classification trees,
randomSurvivalForest forest models, and kmeans clusters.
This package is part of the Rattle toolkit.
DESCRIPTION | 6
NAMESPACE | 1
R/pmml.R | 2714 +++-----------------------------------------------
R/pmml.arules.R | 55 -
R/pmml.kmeans.R |only
R/pmml.ksvm.R |only
R/pmml.lm.R |only
R/pmml.nnet.R |only
R/pmml.randomForest.R |only
R/pmml.rpart.R |only
R/pmml.rsf.R |only
man/pmml.ksvm.Rd | 149 +-
man/pmml.lm.Rd | 13
man/pmml.nnet.Rd | 2
man/pmml.rpart.Rd | 1
15 files changed, 344 insertions(+), 2597 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: A GUI for interactive plots using GTK+
Description: A graphical user interface for viewing and interacting with R plots.
It tries to work out the structure of a plot, in order to interact with it.
The built-in features include: zooming the data space, identifying data points,
editing and annotating the plot, and saving to a file. New tools can be defined.
This package is based on RGtk2, and so requires the GTK+ libraries.
playwith-0.8-56/playwith/man/plotadd.Rd |only
playwith-0.9-3/playwith/DESCRIPTION | 13 -
playwith-0.9-3/playwith/NAMESPACE | 85 +++---
playwith-0.9-3/playwith/R/API.R | 159 +++++++++---
playwith-0.9-3/playwith/R/playTools.R | 43 ---
playwith-0.9-3/playwith/R/playTools_annotate.R | 54 ++--
playwith-0.9-3/playwith/R/playTools_arrow.R | 12
playwith-0.9-3/playwith/R/playTools_clear.R | 13 -
playwith-0.9-3/playwith/R/playTools_coords.R | 5
playwith-0.9-3/playwith/R/playTools_edit.annotations.R | 1
playwith-0.9-3/playwith/R/playTools_edit.call.R | 10
playwith-0.9-3/playwith/R/playTools_expand.R | 2
playwith-0.9-3/playwith/R/playTools_identify.R | 136 ++++++++--
playwith-0.9-3/playwith/R/playTools_options.R | 15 +
playwith-0.9-3/playwith/R/playTools_time.mode.R | 22 +
playwith-0.9-3/playwith/R/playTools_undo.annotation.R |only
playwith-0.9-3/playwith/R/playTools_zero.R | 12
playwith-0.9-3/playwith/R/playTools_zoom.R | 9
playwith-0.9-3/playwith/R/playwith.R | 212 ++++++++++-------
playwith-0.9-3/playwith/R/settings.R |only
playwith-0.9-3/playwith/R/zzz.R |only
playwith-0.9-3/playwith/inst/NEWS | 64 ++++-
playwith-0.9-3/playwith/man/autoplay.Rd | 26 +-
playwith-0.9-3/playwith/man/parameterControlTool.Rd | 4
playwith-0.9-3/playwith/man/playDev.Rd | 2
playwith-0.9-3/playwith/man/playGetIDs.Rd |only
playwith-0.9-3/playwith/man/playTools.Rd | 15 -
playwith-0.9-3/playwith/man/playwith.API.Rd | 2
playwith-0.9-3/playwith/man/playwith.Rd | 100 +++++---
playwith-0.9-3/playwith/man/playwith.options.Rd |only
30 files changed, 658 insertions(+), 358 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Package: orloca.es
Type: Package
Depends: methods, orloca
Suggests: grDevices, graphics
Title: Spanish version of orloca package
Version: 1.0
Date: 2008-06-17
Author: Fernando Fernandez-Palacin
Maintainer: Manuel Munoz-Marquez
Description: Version espanola del paquete orloca que trata de los modelos de Localizacion en Investigacion Operativa (Operations Research LOCational Analysis). En particular, el problema de encontrar el punto que minimiza la suma ponderada de las distancias a un conjunto de puntos dados.
License: GPL (>= 2)
URL: http://knuth.uca.es/orloca
Packaged: Thu Jul 3 11:20:53 2008; mmarquez
posted at: 13:18 | path: /cran/new | permanent link to this entry
Title: Functions for optimal matching
Description: Functions to perform optimal matching, particularly full matching
DESCRIPTION | 6 +--
R/moremethods.optmatch.R | 4 +-
R/stratumStructure.R | 5 --
ToDo | 2 -
inst/doc/optmatch.pdf |binary
tests/moremethods.optmatch-tests.R | 10 +++++
tests/moremethods.optmatch-tests.Rout.save | 56 ++++++++++++++++++++---------
7 files changed, 55 insertions(+), 28 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles,
random deviates and densities.
CHANGES | 8 +++++++-
DESCRIPTION | 6 +++---
R/mvnorm.R | 10 +++++-----
R/mvt.R | 6 +++---
inst/CHANGES |only
inst/doc/MVT_Rnews.pdf |binary
src/mvt.f | 2 +-
src/randomF77.c | 2 +-
8 files changed, 20 insertions(+), 14 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Simultaneous Inference in General Parametric Models
Description: Simultaneous tests and confidence intervals
for general linear hypotheses in parametric models, including
linear, generalized linear, linear mixed effects, and survival models.
multcomp-1.0-0/multcomp/inst/MCMT/Rplots.ps |only
multcomp-1.0-0/multcomp/inst/deprecated/NAMESPACE |only
multcomp-1.0-0/multcomp/tests/regtest-anova.Rout.save |only
multcomp-1.0-0/multcomp/tests/regtest-lme.Rout.save |only
multcomp-1.0-2/multcomp/CHANGES | 16
multcomp-1.0-2/multcomp/DESCRIPTION | 8
multcomp-1.0-2/multcomp/R/contrMat.R | 6
multcomp-1.0-2/multcomp/R/expressions.R | 2
multcomp-1.0-2/multcomp/R/glht.R | 2
multcomp-1.0-2/multcomp/R/helpers.R | 104
multcomp-1.0-2/multcomp/R/maxsets.R | 3
multcomp-1.0-2/multcomp/R/mcp.R | 2
multcomp-1.0-2/multcomp/R/methods.R | 2
multcomp-1.0-2/multcomp/R/parm.R | 2
multcomp-1.0-2/multcomp/R/plot.R | 2
multcomp-1.0-2/multcomp/R/pqfunctions.R | 16
multcomp-1.0-2/multcomp/R/print.R | 6
multcomp-1.0-2/multcomp/inst/CHANGES |only
multcomp-1.0-2/multcomp/inst/CITATION |only
multcomp-1.0-2/multcomp/inst/applications |only
multcomp-1.0-2/multcomp/inst/doc/.build.timestamp |only
multcomp-1.0-2/multcomp/inst/doc/Rplots.ps |only
multcomp-1.0-2/multcomp/inst/doc/generalsiminf.Rnw | 2
multcomp-1.0-2/multcomp/inst/doc/generalsiminf.pdf | 1222 +++++------
multcomp-1.0-2/multcomp/inst/doc/multcomp-examples.pdf |binary
multcomp-1.0-2/multcomp/inst/svn-commit.tmp |only
multcomp-1.0-2/multcomp/tests/Examples/multcomp-Ex.Rout.save | 34
multcomp-1.0-2/multcomp/tests/codetools-checks.Rout.save | 4
multcomp-1.0-2/multcomp/tests/regtest-lme.R | 21
29 files changed, 680 insertions(+), 774 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Moment and Inverse Moment Bayes factors
Description: This package computes Moment and Inverse Moment Bayes factors for linear models, and approximate Bayes factors for GLM and situations having a statistic which is asymptotically normally distributed and sufficient. Routines to evaluate prior densities, distribution functions, quantiles and modes are included.
ChangeLog | 6 +
DESCRIPTION | 4
R/dmom.r | 20 ++--
R/momknown.r | 2
R/momunknown.r | 2
inst/doc/makefile | 2
inst/doc/mombf.pdf | 256 ++++++++++++++++++++++++++---------------------------
7 files changed, 148 insertions(+), 144 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Mixtures of proportional hazard models.
Description: This package fits multiple variable mixtures of various parametric proportional hazard models using the EM-Algorithm. Proportionality restrictions can be imposed on the latent groups and/or on the variables. Several survival distributions can be specified. Missing values are allowed. Independence is assumed over the single variables.
DESCRIPTION | 6 +++---
R/Eclass.R | 14 ++++++++------
R/Mclass.R | 3 +--
R/phmclust.R | 6 ++++--
R/s.check.R | 15 +++++++++++----
man/mixPHM-package.Rd | 10 +++++-----
man/phmclust.Rd | 11 +++++------
7 files changed, 37 insertions(+), 28 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Tools for reading and handling spatial objects
Description: Set of tools for manipulating and reading geographic data, in particular ESRI shapefiles; C code used from shapelib. It includes binary access to GSHHS shoreline files. The package also provides interface wrappers for exchanging spatial objects with packages such as PBSmapping, spatstat, maps, RArcInfo, Stata tmap, WinBUGS, Mondrian, and others.
ChangeLog | 16 ++++++++++++++++
DESCRIPTION | 6 +++---
INDEX | 1 +
NAMESPACE | 2 ++
R/Spatial-methods.R |only
R/SpatialLines-methods.R | 8 +++++---
R/SpatialPoints-methods.R | 9 +++++----
R/SpatialPolys-methods.R | 6 ++++--
R/maptools.R | 5 +++++
R/pcent.R | 1 +
R/readGPS.R | 7 ++++---
R/shapelib.R | 4 ++++
R/sp2pbs.R | 11 ++++++++---
R/subset.R | 1 +
inst/ChangeLog | 16 ++++++++++++++++
inst/changes | 1 +
man/readShapePoly.Rd | 2 +-
man/readShapeSpatial.Rd |only
18 files changed, 77 insertions(+), 19 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Package: lmom
Version: 1.0
Date: 2008-07-03
Title: L-moments
Author: J. R. M. Hosking
Maintainer: J. R. M. Hosking
Description: Functions related to L-moments: computation of L-moments
of distributions and data samples; parameter estimation; L-moment
ratio diagram; plot vs. quantiles of an extreme-value distribution.
License: Common Public License Version 1.0
Packaged: Thu Jul 3 11:08:28 2008; hosking
posted at: 13:18 | path: /cran/new | permanent link to this entry
Title: Kernel smoothing
Description: Kernel density estimators and kernel discriminant analysis for multivariate data
ks-1.5.5/ks/data/unicef.full.dat |only
ks-1.5.6/ks/DESCRIPTION | 9
ks-1.5.6/ks/NAMESPACE | 6
ks-1.5.6/ks/R/binning.R | 43 +++
ks-1.5.6/ks/R/kda.R | 187 ++++++++-------
ks-1.5.6/ks/R/kde.R | 409 ++++++++++++++++++---------------
ks-1.5.6/ks/R/normal.R | 41 ++-
ks-1.5.6/ks/R/prelim.R | 134 +++++++++-
ks-1.5.6/ks/R/selector.R | 480 ++++++++++++++++++++++++++++++---------
ks-1.5.6/ks/README | 13 +
ks-1.5.6/ks/data/Sd2.RData |only
ks-1.5.6/ks/data/Sd4.RData |only
ks-1.5.6/ks/data/Sd6.RData |only
ks-1.5.6/ks/inst/doc/kde.log | 4
ks-1.5.6/ks/inst/doc/kde.pdf |binary
ks-1.5.6/ks/man/Hpi.Rd | 58 +++-
ks-1.5.6/ks/man/binning.Rd |only
ks-1.5.6/ks/man/contourLevels.Rd | 2
ks-1.5.6/ks/man/dmvnorm.mixt.Rd | 3
ks-1.5.6/ks/man/dnorm.mixt.Rd | 3
ks-1.5.6/ks/man/kda.Rd | 8
ks-1.5.6/ks/man/kda.kde.Rd | 12
ks-1.5.6/ks/man/kde.Rd | 21 +
ks-1.5.6/ks/man/ks-internal.Rd |only
ks-1.5.6/ks/man/ks-package.Rd | 19 -
ks-1.5.6/ks/man/plot.kda.kde.Rd | 3
ks-1.5.6/ks/man/plot.kde.Rd | 12
ks-1.5.6/ks/man/vec.Rd | 11
28 files changed, 1031 insertions(+), 447 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Duncan test, Tukey test and Scott-Knott test.
Description: The package contains functions to compare and group means.
DESCRIPTION | 6 +--
R/LScottKnott.R | 2 -
R/LScottKnott.aov.r | 89 ++++++++++++++++++++++++++++++++++++++-----------
man/LScottKnott.Rd | 3 +
man/laercio-package.Rd | 4 +-
5 files changed, 78 insertions(+), 26 deletions(-)
posted at: 13:18 | path: /cran/updated | permanent link to this entry
Title: Irregular Time Series
Description: The its package contains an S4 class for handling irregular time series
its-1.1.5/its/man/Extract.Rd |only
its-1.1.5/its/man/itsAccessor.rd |only
its-1.1.5/its/man/itsArith.rd |only
its-1.1.5/its/man/itsConvert.Rd |only
its-1.1.5/its/man/itsCumdif.rd |only
its-1.1.5/its/man/itsDisp.rd |only
its-1.1.5/its/man/itsInfo.rd |only
its-1.1.5/its/man/itsReplace.Rd |only
its-1.1.7/its/DESCRIPTION | 4
its-1.1.7/its/R/itspkg.R | 1007 ++++++++++++++++++++-------------------
its-1.1.7/its/man/core.Rd |only
its-1.1.7/its/man/dates.Rd |only
its-1.1.7/its/man/its-class.Rd |only
its-1.1.7/its/man/itsConvert.rd |only
its-1.1.7/its/man/itsDef.rd | 9
its-1.1.7/its/man/itsFile.rd | 4
its-1.1.7/its/man/itsFin.rd | 4
its-1.1.7/its/man/itsInterp.rd | 4
its-1.1.7/its/man/itsJoin.rd | 26 -
its-1.1.7/its/man/itsLags.rd | 4
its-1.1.7/its/man/itsSubset.rd | 16
its-1.1.7/its/man/itsTimes.rd | 4
22 files changed, 545 insertions(+), 537 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Title: Homogeneity Analysis
Description: This package performs a homogeneity analysis and various extensions. Rank restrictions on the category quantifications can be imposed (nonlinear PCA). The categories are transformed by means of optimal scaling with options for nominal, ordinal, and numerical scale levels (for rank-1 restrictions). Variables can be grouped into sets, in order to emulate regression analysis and canonical correlation analysis.
homals-0.9-4/homals/inst/doc/homalsR.aux |only
homals-0.9-4/homals/inst/doc/homalsR.log |only
homals-0.9-4/homals/inst/doc/homalsR.out |only
homals-0.9-4/homals/inst/doc/homalsR.tex |only
homals-0.9-5/homals/DESCRIPTION | 11 --
homals-0.9-5/homals/R/expandFrame.R |only
homals-0.9-5/homals/R/homals.R | 47 ++++++---
homals-0.9-5/homals/R/plot.homals.R | 132 ++++++++++++++--------------
homals-0.9-5/homals/R/plot3d.homals.R | 16 +--
homals-0.9-5/homals/R/plot3dstatic.homals.R | 38 ++++----
homals-0.9-5/homals/R/predict.homals.R | 4
homals-0.9-5/homals/R/summary.homals.R | 4
homals-0.9-5/homals/inst/doc/homalsR.pdf |binary
homals-0.9-5/homals/man/homals-package.Rd | 11 --
homals-0.9-5/homals/man/homals.Rd | 25 ++---
15 files changed, 148 insertions(+), 140 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Title: Hidden Markov models with discrete non-parametric
observation distributions.
Description: Fits hidden Markov models with discrete non-parametric
observation distributions to data sets. Simulates data
from such models.
DESCRIPTION | 10 +++++-----
R/revise.tpm.R | 2 +-
man/hmm.Rd | 9 +++++++++
3 files changed, 15 insertions(+), 6 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Title: General Smoothing Splines
Description: A comprehensive package for structural multivariate
function estimation using smoothing splines.
ChangeLog | 13 +++++++++++++
DESCRIPTION | 4 ++--
R/family.proj.R | 2 +-
R/fitted.R | 2 +-
R/grkpk.R | 16 ++++------------
R/mkterm.R | 8 ++++----
R/predict.ssanova.R | 15 ++++++++++-----
R/rkpk.R | 16 ++++------------
man/fitted.ssanova.Rd | 8 ++++----
man/predict.ssanova.Rd | 4 ++--
man/print.Rd | 16 ++++++++--------
man/project.Rd | 8 ++++----
man/summary.gssanova.Rd | 2 +-
man/summary.gssanova0.Rd | 2 +-
man/summary.ssanova.Rd | 4 ++--
src/ratfor/reg.r | 2 +-
16 files changed, 62 insertions(+), 60 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Title: Generalized Additive Models for Location Scale and Shape.
Description: The main GAMLSS library and datasets.
DESCRIPTION | 6 +++---
R/HistDist.R | 3 ++-
R/findhyper.R | 34 ++++++++++++++++++++--------------
R/profterm.R | 7 +++----
inst/doc/NEWS.txt | 5 +++++
man/findhyper.Rd | 8 ++++----
tests |only
7 files changed, 37 insertions(+), 26 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Title: Functional Data Analysis
Description: These functions were developed to support
functional data analysis as described in Ramsay, J. O.
and Silverman, B. W. (2005) Functional Data Analysis.
New York: Springer. They were ported from earlier
versions in Matlab and S-PLUS. A manual that describes
the use of these functions is available in this
library. The library also contains a number of the
data sets used in the book along with R code for the
analyses that produced many of the figures in the book.
fda-1.2.3/fda/R/nls.R |only
fda-1.2.3/fda/data/CanadianWeatherData.R |only
fda-1.2.3/fda/data/dateAccessories.R |only
fda-1.2.3/fda/man/nls.Rd |only
fda-1.2.4/fda/DESCRIPTION | 46 +-
fda-1.2.4/fda/R/CSTRfn.R | 2
fda-1.2.4/fda/R/Eigen.R |only
fda-1.2.4/fda/R/axisIntervals.R | 26 -
fda-1.2.4/fda/R/bsplinepen.R | 4
fda-1.2.4/fda/R/checkLogicalInteger.R |only
fda-1.2.4/fda/R/dirs.R |only
fda-1.2.4/fda/R/fd.R | 30 +
fda-1.2.4/fda/R/fdPar.R | 27 +
fda-1.2.4/fda/R/fdaMatlabPath.R |only
fda-1.2.4/fda/R/file.copy2.R |only
fda-1.2.4/fda/R/lambda2gcv.R | 5
fda-1.2.4/fda/R/lines.fd.R | 4
fda-1.2.4/fda/R/lmWinsor.R |only
fda-1.2.4/fda/R/norder.R |only
fda-1.2.4/fda/R/plot.fd.R | 83 +++--
fda-1.2.4/fda/R/plotfit.fd.R | 98 ++++-
fda-1.2.4/fda/R/predict.lmWnsor.R |only
fda-1.2.4/fda/R/smooth.basis.R | 348 +++++++++++----------
fda-1.2.4/fda/R/smooth.basisPar.R | 29 +
fda-1.2.4/fda/data/CanadianWeather.rda |only
fda-1.2.4/fda/data/dateAccessories.rda |only
fda-1.2.4/fda/data/lip.rda |binary
fda-1.2.4/fda/demo/growth.R | 73 +++-
fda-1.2.4/fda/demo/lip.R | 177 +++++++---
fda-1.2.4/fda/inst/Matlab |only
fda-1.2.4/fda/inst/scripts/CSTR/CSTR_demo.R | 23 +
fda-1.2.4/fda/inst/scripts/CSTR/CSTR_demo.asv |only
fda-1.2.4/fda/inst/scripts/CSTR/CSTR_demo.m | 40 ++
fda-1.2.4/fda/inst/scripts/CSTR/CSTRfn.asv |only
fda-1.2.4/fda/inst/scripts/CSTR/CSTRfn.m | 56 +--
fda-1.2.4/fda/inst/scripts/afda-ch06.R | 2
fda-1.2.4/fda/inst/scripts/fda-ch13.R |only
fda-1.2.4/fda/inst/scripts/fda-ch19.R |only
fda-1.2.4/fda/inst/scripts/fda-script-progress.xls |binary
fda-1.2.4/fda/man/CanadianWeather.Rd | 35 +-
fda-1.2.4/fda/man/Eigen.Rd |only
fda-1.2.4/fda/man/Lfd.Rd | 1
fda-1.2.4/fda/man/bsplineS.Rd | 14
fda-1.2.4/fda/man/bsplinepen.Rd | 1
fda-1.2.4/fda/man/checkLogicalInteger.Rd |only
fda-1.2.4/fda/man/create.bspline.basis.Rd | 2
fda-1.2.4/fda/man/dateAccessories.Rd | 13
fda-1.2.4/fda/man/dirs.Rd |only
fda-1.2.4/fda/man/fd.Rd | 33 +
fda-1.2.4/fda/man/fdPar.Rd | 39 +-
fda-1.2.4/fda/man/fdaMatlabPath.Rd |only
fda-1.2.4/fda/man/file.copy2.Rd |only
fda-1.2.4/fda/man/getbasisrange.Rd | 8
fda-1.2.4/fda/man/inprod.Bspline.Rd | 34 +-
fda-1.2.4/fda/man/lambda2gcv.Rd | 10
fda-1.2.4/fda/man/lines.fd.Rd | 32 +
fda-1.2.4/fda/man/lip.Rd | 45 ++
fda-1.2.4/fda/man/lmWinsor.Rd |only
fda-1.2.4/fda/man/norder.Rd |only
fda-1.2.4/fda/man/pinch.Rd | 17 -
fda-1.2.4/fda/man/plot.basisfd.Rd | 1
fda-1.2.4/fda/man/plot.fd.Rd | 56 ++-
fda-1.2.4/fda/man/plotfit.fd.Rd | 73 ++--
fda-1.2.4/fda/man/predict.lmWinsor.Rd |only
fda-1.2.4/fda/man/smooth.basis.Rd | 183 ++++++-----
fda-1.2.4/fda/man/smooth.basisPar.Rd | 157 ++++++---
fda-1.2.4/fda/man/var.fd.Rd | 8
fda-1.2.4/fda/man/vec2Lfd.Rd | 1
68 files changed, 1177 insertions(+), 659 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Title: Bayesian Analysis in Extreme Value Theory
Description: Provides functions for the bayesian analysis of
extreme value models, using MCMC methods.
evdbayes-1.0-6/evdbayes/inst/doc/guide.pdf |only
evdbayes-1.0-6/evdbayes/inst/doc/guide.tex |only
evdbayes-1.0-7/evdbayes/DESCRIPTION | 9 ++++-----
evdbayes-1.0-7/evdbayes/R/inf.R |only
evdbayes-1.0-7/evdbayes/R/lik.R |only
evdbayes-1.0-7/evdbayes/R/mcmc.R |only
evdbayes-1.0-7/evdbayes/R/prior.R |only
evdbayes-1.0-7/evdbayes/R/utils.R |only
evdbayes-1.0-7/evdbayes/inst/doc/evdbayesGuide.pdf |only
evdbayes-1.0-7/evdbayes/man/ar.choice.Rd |only
evdbayes-1.0-7/evdbayes/man/jumps.Rd |only
11 files changed, 4 insertions(+), 5 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Title: Multivariate Adaptive Regression Spline Models
Description: Build regression models using the techniques in Friedman's
papers "Fast MARS" and "Multivariate Adaptive Regression Splines".
(The term "MARS" is copyrighted and thus not used in the name of the package.)
DESCRIPTION | 4
NEWS | 9
R/format.earth.R | 105 +--
man/earth.Rd | 26
man/evimp.Rd | 11
man/format.earth.Rd | 14
man/mars.to.earth.Rd | 44 -
man/update.earth.Rd | 12
src/earth.c | 22
src/tests/test.earth.full.R | 11
src/tests/test.earth.full.Rout.save | 950 +++++++++++++++++++++++++++++++++++-
src/tests/test.plotmo.Rout.save | 32 -
12 files changed, 1104 insertions(+), 136 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Title: Dependent Mixture Models
Description: Fit latent (hidden) Markov models on mixed categorical and continuous (timeseries)
data, otherwise known as dependent mixture models
depmixS4-0.1-1/depmixS4/R/depmix.fitted.R |only
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depmixS4-0.2-0/depmixS4/R/viterbi.R | 198 +++--------
depmixS4-0.2-0/depmixS4/README | 8
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depmixS4-0.2-0/depmixS4/man/balance.Rd | 23 +
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depmixS4-0.2-0/depmixS4/man/depmix.fit.Rd | 162 ++++++---
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depmixS4-0.2-0/depmixS4/man/response-classes.Rd | 7
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depmixS4-0.2-0/depmixS4/man/speed.Rd | 14
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63 files changed, 514 insertions(+), 727 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Title: Design and Randomization in Crossover Studies
Description: Contains functions for the construction and randomization of balanced carryover balanced designs. Contains functions to check given designs for balance. Also contains functions for simulation studies on the validity of two randomization procedures.
DESCRIPTION | 8 ++++----
R/GF.R | 2 +-
R/balmin.RMD.R | 4 ++--
R/design.row.R | 2 +-
R/isCbalanced.R | 2 +-
5 files changed, 9 insertions(+), 9 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Title: Builds color tables
Description: Builds gradient color maps
DESCRIPTION | 6 ++++--
R/colorRamps.R | 17 ++++++++++++++++-
man/colorRamps-package.Rd | 4 ++--
man/primary.colors.Rd | 6 +++---
man/ramps.Rd |only
5 files changed, 25 insertions(+), 8 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Title: Clinical Trial Design and Data Analysis Functions
Description: Utilities to make your clinical collaborations easier if not fun.
CHANGES | 5 +++++
DESCRIPTION | 4 ++--
R/toxbdry.R | 22 +++++++++++++++++-----
R/toxbdry1.R |only
R/toxbdry2.R |only
man/toxbdry.Rd | 9 +++++++--
6 files changed, 31 insertions(+), 9 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Title: Aster Models
Description: functions and datasets for Aster modeling (forest graph
exponential family conditional or unconditional canonical statistic models
for life history analysis)
CHANGES | 1 +
DESCRIPTION | 8 ++++----
R/predict.aster.R | 16 ++++++++++++----
inst/doc/.build.timestamp |only
inst/doc/Rplots.pdf |only
inst/doc/tutor.pdf |binary
man/predict.aster.Rd | 9 +++++++--
tests/debug.rda |only
tests/predict.R | 10 ++++++++++
tests/predict.Rout.save | 15 +++++++++++++--
10 files changed, 47 insertions(+), 12 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Title: Zero Inflated Generalized Poisson (ZIGP) regression models
Description: Adapt and analyze and compare GP, ZIP and ZIGP regression models
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ZIGP-2.3/ZIGP/man/mle.zigp.rd | 2 +-
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46 files changed, 5 insertions(+), 5 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Package: SNPMaP.cdm
Type: Package
Title: Annotation for SNP Microarrays and Pooling in R
Version: 1.0.0
Date: 2008-06-24
Author: Oliver SP Davis, Leo C Schalkwyk
Maintainer: Oliver SP Davis
Description: Pooling DNA on SNP microarrays is a cost-effective way to carry out genome-wide association studies for heritable disorders or traits. The SNPMaP package provides formal SNPMaP objects and methods in R as a base for these analyses using Affymetrix genotyping arrays. The SNPMaP.cdm package provides cdm objects for the SNPMaP package.
License: GPL (>= 3)
LazyLoad: yes
LazyData: yes
Depends: R (>= 2.4.0)
Enhances: SNPMaP
Packaged: Tue Jun 24 17:42:49 2008; spjgosd
posted at: 13:17 | path: /cran/new | permanent link to this entry
Title: Reversible Jump MCMC for the analysis of CGH arrays.
Description: Bayesian analysis of CGH microarrays fitting Hidden Markov Chain models.
The selection of the number of states is made via their posterior probability
computed by Reversible Jump Markov Chain Monte Carlo Methods. Also
returns probabilistic common regions for gains/losses.
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RJaCGH-1.5.3/RJaCGH/man/summary.RJaCGH.Rd | 10
RJaCGH-1.5.3/RJaCGH/man/trace.plot.Rd | 6
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59 files changed, 4864 insertions(+), 3744 deletions(-)
posted at: 13:17 | path: /cran/updated | permanent link to this entry
Title: R/FrEAK interface
Description: An R interface to a modified version of the Free Evolutionary Algorithm Kit FrEAK. FrEAK is a toolkit written in Java to design and analyze evolutionary algorithms. Both the R interface and an extended version of FrEAK are contained in the RFreak package. For more information on FrEAK see http://sourceforge.net/projects/freak427/.
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RFreak-0.2-2/RFreak/inst/java/build.xml | 2
RFreak-0.2-2/RFreak/inst/java/resource/freak/gui/help/footnode.html | 2
RFreak-0.2-2/RFreak/inst/java/resource/freak/gui/help/index.html | 482 +++++-----
RFreak-0.2-2/RFreak/inst/java/resource/freak/gui/help/node1.html | 4
RFreak-0.2-2/RFreak/inst/java/resource/freak/gui/help/node3.html | 268 ++---
RFreak-0.2-2/RFreak/inst/java/resource/freak/gui/help/node4.html | 284 ++---
RFreak-0.2-2/RFreak/inst/java/resource/freak/gui/help/node5.html | 186 +--
RFreak-0.2-2/RFreak/inst/java/resource/freak/gui/help/node6.html | 374 +++----
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RFreak-0.2-2/RFreak/inst/java/src/freak/Freak.java | 3
RFreak-0.2-2/RFreak/inst/java/src/freak/core/graph/Mutation.java | 4
RFreak-0.2-2/RFreak/inst/java/src/freak/core/graph/Recombination.java | 4
RFreak-0.2-2/RFreak/inst/java/src/freak/core/modulesupport/ClassCollector.java | 3
RFreak-0.2-2/RFreak/inst/java/src/freak/core/util/GraphViz.java | 2
RFreak-0.2-2/RFreak/inst/java/src/freak/gui/graph/EditorDialog.java | 1
RFreak-0.2-2/RFreak/inst/java/src/freak/gui/scheduleeditor/ScheduleEditor.java | 2
RFreak-0.2-2/RFreak/inst/java/src/freak/gui/scheduleeditor/ScheduleEditorPanel.java | 2
RFreak-0.2-2/RFreak/inst/java/src/freak/module/fitness/booleanfunction/GenericPareto.java | 58 +
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RFreak-0.2-2/RFreak/inst/java/src/freak/module/view/StdView.java | 5
RFreak-0.2-2/RFreak/inst/java/src/freak/rinterface/control/RFreak.java | 6
RFreak-0.2-2/RFreak/inst/java/src/freak/rinterface/model/IndividualSummary.java | 46
RFreak-0.2-2/RFreak/inst/java/src/freak/rinterface/model/RReturns.java | 39
RFreak-0.2-2/RFreak/inst/java/src/freak/rinterface/model/ScheduleConfigurator.java | 217 ++++
RFreak-0.2-2/RFreak/man/LTSevol.Rd | 5
RFreak-0.2-2/RFreak/man/RFreak-package.Rd | 4
RFreak-0.2-2/RFreak/man/evolreg-class.Rd |only
RFreak-0.2-2/RFreak/man/robreg.evol.Rd |only
73 files changed, 1463 insertions(+), 1309 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Regional Frequency Analysis
Description: Several function to perform a Regional Frequency Analysis
DESCRIPTION | 9 ++++-----
1 file changed, 4 insertions(+), 5 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: R object-oriented programming with or without references
Description: Methods and classes for object-oriented programming in R with or without references. Large effort has been made on making definition of methods as simple as possible with a minimum of maintainance for package developers. The package has been developed since 2001 and is now considered very stable. This is a cross-platform package implemented in pure R that defines standard S3 classes without any tricks.
R.oo-1.4.2/R.oo/inst/HISTORY |only
R.oo-1.4.2/R.oo/man/getInstanciationTime.BasicObject.Rd |only
R.oo-1.4.2/R.oo/man/getInstanciationTime.Object.Rd |only
R.oo-1.4.5/R.oo/DESCRIPTION | 6 +-
R.oo-1.4.5/R.oo/R/030.ObjectClassFunctions.R | 5 +
R.oo-1.4.5/R.oo/R/050.Object.R | 48 ++++++++--------
R.oo-1.4.5/R.oo/R/999.NonDocumentedObjects.R | 5 +
R.oo-1.4.5/R.oo/R/ASCII.R | 15 ++++-
R.oo-1.4.5/R.oo/R/BasicObject.R | 20 ++++--
R.oo-1.4.5/R.oo/R/Package.R | 27 ++++++---
R.oo-1.4.5/R.oo/R/getConstructorS3.R |only
R.oo-1.4.5/R.oo/R/getName.environment.R |only
R.oo-1.4.5/R.oo/inst/NEWS |only
R.oo-1.4.5/R.oo/man/BasicObject.Rd | 2
R.oo-1.4.5/R.oo/man/Class.Rd | 2
R.oo-1.4.5/R.oo/man/Exception.Rd | 2
R.oo-1.4.5/R.oo/man/InternalErrorException.Rd | 2
R.oo-1.4.5/R.oo/man/Non-documented_objects.Rd | 5 +
R.oo-1.4.5/R.oo/man/Object.Rd | 2
R.oo-1.4.5/R.oo/man/Package.Rd | 4 +
R.oo-1.4.5/R.oo/man/RccViolationException.Rd | 2
R.oo-1.4.5/R.oo/man/Rdoc.Rd | 2
R.oo-1.4.5/R.oo/man/RdocException.Rd | 2
R.oo-1.4.5/R.oo/man/charToInt.Rd | 1
R.oo-1.4.5/R.oo/man/getChangeLog.Package.Rd | 13 +++-
R.oo-1.4.5/R.oo/man/getConstructorS3.Rd |only
R.oo-1.4.5/R.oo/man/getInstantiationTime.BasicObject.Rd |only
R.oo-1.4.5/R.oo/man/getInstantiationTime.Object.Rd |only
R.oo-1.4.5/R.oo/man/getInternalAddress.Object.Rd | 5 +
R.oo-1.4.5/R.oo/man/getName.environment.Rd |only
R.oo-1.4.5/R.oo/man/intToChar.Rd | 1
R.oo-1.4.5/R.oo/man/setConstructorS3.Rd | 2
R.oo-1.4.5/R.oo/man/showChangeLog.Package.Rd | 6 +-
33 files changed, 119 insertions(+), 60 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Utility function for defining S3 methods
Description: Methods that simplify the setup of S3 generic functions and S3 methods. Major effort has been made in making definition of methods as simple as possible with a minimum of maintainance for package developers. For example, generic functions are created automatically, if missing, and name conflict are automatically solved, if possible. The method setMethodS3() is a good start for those who in the future want to migrate to S4. This is a cross-platform package implemented in pure R and is generating standard S3 methods.
R.methodsS3-1.0.1/R.methodsS3/R/setMethodS3.R |only
R.methodsS3-1.0.1/R.methodsS3/inst/HISTORY |only
R.methodsS3-1.0.3/R.methodsS3/DESCRIPTION | 6 +++---
R.methodsS3-1.0.3/R.methodsS3/R/030.setMethodS3.R |only
R.methodsS3-1.0.3/R.methodsS3/R/getGenericS3.R |only
R.methodsS3-1.0.3/R.methodsS3/R/getMethodS3.R |only
R.methodsS3-1.0.3/R.methodsS3/R/isGenericS3.R | 14 ++++++++++----
R.methodsS3-1.0.3/R.methodsS3/inst/NEWS |only
R.methodsS3-1.0.3/R.methodsS3/man/R.methodsS3-package.Rd | 10 +---------
R.methodsS3-1.0.3/R.methodsS3/man/getGenericS3.Rd |only
R.methodsS3-1.0.3/R.methodsS3/man/getMethodS3.Rd |only
R.methodsS3-1.0.3/R.methodsS3/man/isGenericS3.Rd | 2 +-
R.methodsS3-1.0.3/R.methodsS3/man/isGenericS4.Rd | 2 +-
R.methodsS3-1.0.3/R.methodsS3/man/setMethodS3.Rd | 2 +-
14 files changed, 17 insertions(+), 19 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Prediction Intervals for Three Basic Statistical Models
Description: Three prediction algorithms described in the paper "On-line predictive linear regression"
(Annals of Statistics, 2008)
DESCRIPTION | 6 ++---
R/gausspred.R | 4 +--
R/iidpred.R | 4 +--
R/mvapred.R | 4 +--
demo/onlinepred.R | 27 +++++++-------------------
man/gausspred.Rd | 52 ++++++++++++++++++++++++--------------------------
man/iidpred.Rd | 56 ++++++++++++++++++++++++++----------------------------
man/mvapred.Rd | 54 +++++++++++++++++++++++++---------------------------
8 files changed, 95 insertions(+), 112 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Title: Generalized Pareto Distribution and Peaks Over Threshold
Description: Some functions useful to perform a Peak Over Threshold analysis in univariate and bivariate cases. A user's guide is avalaible.
DESCRIPTION | 6
R/confGPD.R | 4
inst/CHANGES | 3096 -----------------
inst/doc/POT.pdf | 9502 +++++++++++++++++++++++++++----------------------------
4 files changed, 4840 insertions(+), 7768 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Package: Network
Version: 1.1
Title: Estimates network indices, including trophic structure of foodwebs
Author: Karline Soetaert
Maintainer: Karline Soetaert
Depends: R (>= 2.01), MASS
Description: Given a network (e.g. a food web), estimates several network indices. These include: Ascendency network indices, Direct and indirect dependencies, Effective measures, Environ network indices, General network indices, Pathway analysis, Network uncertainty indices and constraint efficiencies and the trophic level and omnivory indices of food webs.
License: GPL
LazyData: yes
Packaged: Sat Jul 5 17:56:37 2008; hornik
posted at: 13:16 | path: /cran/new | permanent link to this entry
Title: Computation of functional similarities between GO terms and gene products; GO enrichement analysis
Description: This package implements several functions useful for
computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis
GOSim-1.1.3.2/GOSim/data/ICsBPIMP_IGI_IDA_IEP_IPI.rda |only
GOSim-1.1.3.2/GOSim/data/ICsBPall.rda |only
GOSim-1.1.3.2/GOSim/data/ICsCCIMP_IGI_IDA_IEP_IPI.rda |only
GOSim-1.1.3.2/GOSim/data/ICsCCall.rda |only
GOSim-1.1.3.2/GOSim/data/ICsMFIMP_IGI_IDA_IEP_IPI.rda |only
GOSim-1.1.3.2/GOSim/data/ICsMFall.rda |only
GOSim-1.1.4.0/GOSim/DESCRIPTION | 10
GOSim-1.1.4.0/GOSim/NAMESPACE | 12
GOSim-1.1.4.0/GOSim/R/GOenrichment.R | 10
GOSim-1.1.4.0/GOSim/R/clusterEvaluation.R | 18
GOSim-1.1.4.0/GOSim/R/geneSimilarity.R | 82
GOSim-1.1.4.0/GOSim/R/general.R | 101
GOSim-1.1.4.0/GOSim/R/pca.R | 30
GOSim-1.1.4.0/GOSim/R/termSimilarity.R | 28
GOSim-1.1.4.0/GOSim/data/ICsBPflyall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsBPhumanall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsBPmalariaall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsBPmouseall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsBPratall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsBPyeastall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsCCflyall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsCChumanall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsCCmalariaall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsCCmouseall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsCCratall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsCCyeastall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsMFflyall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsMFhumanall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsMFmalariaall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsMFmouseall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsMFratall.rda |only
GOSim-1.1.4.0/GOSim/data/ICsMFyeastall.rda |only
GOSim-1.1.4.0/GOSim/inst/doc/GOSim.Rnw | 12
GOSim-1.1.4.0/GOSim/inst/doc/GOSim.aux | 22
GOSim-1.1.4.0/GOSim/inst/doc/GOSim.log | 357 +
GOSim-1.1.4.0/GOSim/inst/doc/GOSim.pdf | 3265 ++++++++----------
GOSim-1.1.4.0/GOSim/inst/doc/GOSim.tex | 259 -
GOSim-1.1.4.0/GOSim/man/IC.Rd | 58
GOSim-1.1.4.0/GOSim/man/calcICs.Rd | 2
GOSim-1.1.4.0/GOSim/man/filterGO.Rd | 2
GOSim-1.1.4.0/GOSim/man/getDisjCommAnc.Rd | 2
GOSim-1.1.4.0/GOSim/man/getMinimumSubsumer.Rd | 2
GOSim-1.1.4.0/GOSim/man/setEvidenceLevel.Rd | 77
GOSim-1.1.4.0/GOSim/man/setOntology.Rd | 3
44 files changed, 2171 insertions(+), 2181 deletions(-)
posted at: 13:16 | path: /cran/updated | permanent link to this entry
Package: DiagnosisMed
Version: 0.0.1
Date: 2008-06-18
Author: Pedro Brasil
Maintainer: Pedro Brasil
Depends: R (>= 2.6.2),epitools,epicalc
Title: Diagonositic test accuracy evaluation for medical professionals
Description: DiagnosisMed is a package to analyse data from diganostic test accuracy evaluating health conditions. It is beeing built to be used by health professionals. This pacakge is - or soon will be - able to estimate sample size for common situations in diagnostic test accuracy, estimate sensitivity and especificity form categorical and continuous test results including some evaluations of indeteminate results, or compare different analysis strategies into measures commonly used by health professionals.
License: GPL version 2 or later
Packaged: Sat Jul 5 17:43:56 2008; hornik
posted at: 13:16 | path: /cran/new | permanent link to this entry