Tue, 08 Jul 2008

Package ppls updated to version 1.02 with previous version 1.01 dated 2008-04-15

Author: Nicole Kr\"amer Anne-Laure Boulesteix
Title: Penalized Partial Least Squares
Description: This package contains linear and nonlinear regression methods based on Partial Least Squares and Penalization Techniques.

Diff between ppls versions 1.01 dated 2008-04-15 and 1.02 dated 2008-07-08

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Package mvtnorm updated to version 0.9-2 with previous version 0.9-1 dated 2008-07-05

Author: Alan Genz, Frank Bretz and Torsten Hothorn with contributions by Tetsuhisa Miwa, Xuefei Mi, Friedrich Leisch and Fabian Scheipl
Title: Multivariate Normal and t Distributions
Description: Computes multivariate normal and t probabilities, quantiles, random deviates and densities.

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Package mixstock updated to version 0.9 with previous version 0.8.4.2 dated 2007-02-11

Author: Ben Bolker
Title: functions for mixed stock analysis
Description: mixed stock analysis functions

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Package ghyp updated to version 1.3.0 with previous version 1.2.0 dated 2008-03-07

Author: Wolfgang Breymann, David Luethi
Title: A package on the generalized hyperbolic distribution and its special cases
Description: This package provides detailed functionality for working with the univariate and multivariate Generalized Hyperbolic distribution and its special cases (Hyperbolic (hyp), Normal Inverse Gaussian (NIG), Variance Gamma (VG), skewed Student-t and Gaussian distribution). Especially, it contains fitting procedures, an AIC-based model selection routine, and functions for the computation of density, quantile, probability, random variates, expected shortfall and some portfolio optimization and plotting routines as well as the likelihood ratio test. In addition, it contains the Generalized Inverse Gaussian distribution.

Diff between ghyp versions 1.2.0 dated 2008-03-07 and 1.3.0 dated 2008-07-08

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Package epicalc updated to version 2.7.1.1 with previous version 2.7.1.0 dated 2008-06-20

Author: Virasakdi Chongsuvivatwong
Title: Epidemiological calculator
Description: Functions making R easy for epidemiological calculation.

Diff between epicalc versions 2.7.1.0 dated 2008-06-20 and 2.7.1.1 dated 2008-07-08

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Package earth updated to version 2.0-4 with previous version 2.0-3 dated 2008-07-05

Author: Stephen Milborrow derived from mda:mars by Trevor Hastie and Rob Tibshirani.
Title: Multivariate Adaptive Regression Spline Models
Description: Build regression models using the techniques in Friedman's papers "Fast MARS" and "Multivariate Adaptive Regression Splines". (The term "MARS" is copyrighted and thus not used in the name of the package.)

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Package adegenet updated to version 1.2-0 with previous version 1.1-2 dated 2008-06-02

Author: Thibaut Jombart , with contributions from Peter Solymos
Title: adegenet: a R package for the multivariate analysis of genetic markers.
Description: Classes and functions for genetic data analysis within the multivariate framework.

Diff between adegenet versions 1.1-2 dated 2008-06-02 and 1.2-0 dated 2008-07-08

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Package GOSim updated to version 1.1.4.1 with previous version 1.1.4.0 dated 2008-07-05

Author: Holger Froehlich contributions by Tim Beissbarth
Title: Computation of functional similarities between GO terms and gene products; GO enrichement analysis
Description: This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis

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Package languageR updated to version 0.94 with previous version 0.92 dated 2008-04-29

Author: R. H. Baayen
Title: Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics".
Description: Data sets exemplifying statistical methods, and some facilitatory utility functions used in "Analyzing Linguistic Data: A practical introduction to statistics using R", Cambridge University Press, 2008.

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New package tossm with initial version 1.0
Package: tossm
Type: Package
Title: Testing of Spatial Structure Methods
Version: 1.0
Date: 2008-07-07
Author: Karen Martien, Dave Gregovich, Mark Bravington
Maintainer: Karen Martien
Description: Provides a framework under which methods for using genetic data to detect population structure and define management units can be tested.
Depends: splancs,grid,gpclib,hierfstat,mvbutils,rmetasim
URL: http://swfsc.noaa.gov/TOSSM.aspx
LazyData: true
License: GPL version 2 or newer
Packaged: Mon Jul 7 15:58:49 2008; DPG

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Package fields updated to version 4.3 with previous version 4.1 dated 2007-11-29

Author: Reinhard Furrer, Douglas Nychka and Stephen Sain
Title: Tools for spatial data
Description: Fields is for curve, surface and function fitting with an emphasis on splines, spatial data and spatial statistics. The major methods include cubic, robust, and thin plate splines, multivariate Kriging and Kriging for large data sets. One main feature is any covariance function implemented in R can be used for spatial prediction. There are also useful functions for plotting and working with spatial data as images. This package also contains an implementation of a sparse matrix methods for large data sets and currently requires the sparse matrix (spam) package for testing (but not for the standard spatial functions.) Use help(fields) to get started and for an overview.

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 fields-4.3/fields/R/describe.bplot.R                 |    5 
 fields-4.3/fields/R/diag.multiply.R                  |    5 
 fields-4.3/fields/R/discretize.image.R               |    5 
 fields-4.3/fields/R/double.exp.R                     |    5 
 fields-4.3/fields/R/drape.color.R                    |   21 ++
 fields-4.3/fields/R/drape.plot.R                     |    5 
 fields-4.3/fields/R/draw.bplot.R                     |    5 
 fields-4.3/fields/R/draw.bplot.obj.R                 |    5 
 fields-4.3/fields/R/dyadic.2check.R                  |    5 
 fields-4.3/fields/R/dyadic.check.R                   |    5 
 fields-4.3/fields/R/evlpoly.R                        |    5 
 fields-4.3/fields/R/evlpoly2.R                       |    5 
 fields-4.3/fields/R/exp.cov.R                        |    5 
 fields-4.3/fields/R/exp.earth.cov.R                  |    5 
 fields-4.3/fields/R/exp.image.cov.R                  |    5 
 fields-4.3/fields/R/exp.simple.cov.R                 |    5 
 fields-4.3/fields/R/fast.1way.R                      |    5 
 fields-4.3/fields/R/fields.color.picker.R            |    5 
 fields-4.3/fields/R/fields.convert.grid.R            |    5 
 fields-4.3/fields/R/fields.derivative.poly.R         |    5 
 fields-4.3/fields/R/fields.diagonalize.R             |    5 
 fields-4.3/fields/R/fields.duplicated.matrix.R       |    5 
 fields-4.3/fields/R/fields.mkpoly.R                  |    5 
 fields-4.3/fields/R/fields.rdist.near.R              |    5 
 fields-4.3/fields/R/fields.style.R                   |    5 
 fields-4.3/fields/R/fields.x.to.grid.R               |    5 
 fields-4.3/fields/R/find.upcross.R                   |    5 
 fields-4.3/fields/R/fitted.Krig.R                    |    5 
 fields-4.3/fields/R/flame.R                          |    5 
 fields-4.3/fields/R/gauss.cov.R                      |    5 
 fields-4.3/fields/R/gcv.Krig.R                       |    5 
 fields-4.3/fields/R/golden.section.search.R          |    5 
 fields-4.3/fields/R/grey.level.R                     |    5 
 fields-4.3/fields/R/image.plot.R                     |   17 +-
 fields-4.3/fields/R/image.plot.info.R                |   42 ++++
 fields-4.3/fields/R/image.plot.plt.R                 |    5 
 fields-4.3/fields/R/image.smooth.R                   |    5 
 fields-4.3/fields/R/image.smooth.setup.R             |    5 
 fields-4.3/fields/R/image2lz.R                       |   53 ++++--
 fields-4.3/fields/R/in.poly.R                        |    5 
 fields-4.3/fields/R/interp.surface.R                 |    5 
 fields-4.3/fields/R/interp.surface.grid.R            |    5 
 fields-4.3/fields/R/krig.image.R                     |    5 
 fields-4.3/fields/R/krig.image.parameters.R          |    5 
 fields-4.3/fields/R/lonlat2xy.R                      |    5 
 fields-4.3/fields/R/mKrig.family.R                   |    5 
 fields-4.3/fields/R/make.surface.grid.R              |    5 
 fields-4.3/fields/R/matern.image.cov.R               |    5 
 fields-4.3/fields/R/minimax.crit.R                   |    5 
 fields-4.3/fields/R/minitri.R                        |    5 
 fields-4.3/fields/R/ozone.R                          |    5 
 fields-4.3/fields/R/parse.grid.list.R                |    5 
 fields-4.3/fields/R/periodic.cov.1d.R                |    5 
 fields-4.3/fields/R/periodic.cov.cyl.R               |    5 
 fields-4.3/fields/R/periodic.plane.3d.R              |    5 
 fields-4.3/fields/R/plot.Krig.R                      |    5 
 fields-4.3/fields/R/plot.Wimage.R                    |    5 
 fields-4.3/fields/R/plot.krig.image.R                |    5 
 fields-4.3/fields/R/plot.sim.krig.image.R            |    5 
 fields-4.3/fields/R/plot.spatial.design.R            |    5 
 fields-4.3/fields/R/plot.sreg.R                      |    7 
 fields-4.3/fields/R/plot.surface.R                   |    5 
 fields-4.3/fields/R/plot.vgram.matrix.R              |    5 
 fields-4.3/fields/R/poisson.cov.R                    |    5 
 fields-4.3/fields/R/poly.image.R                     |only
 fields-4.3/fields/R/predict.Krig.R                   |    5 
 fields-4.3/fields/R/predict.interp.surface.R         |    5 
 fields-4.3/fields/R/predict.krig.image.R             |    5 
 fields-4.3/fields/R/predict.se.Krig.R                |    7 
 fields-4.3/fields/R/predict.se.R                     |    5 
 fields-4.3/fields/R/predict.sreg.R                   |    7 
 fields-4.3/fields/R/predict.surface.R                |    5 
 fields-4.3/fields/R/predict.surface.se.R             |    5 
 fields-4.3/fields/R/print.Krig.R                     |    5 
 fields-4.3/fields/R/print.krig.image.R               |    5 
 fields-4.3/fields/R/print.qsreg.R                    |    5 
 fields-4.3/fields/R/print.spatial.design.R           |    5 
 fields-4.3/fields/R/print.sreg.R                     |    5 
 fields-4.3/fields/R/print.summary.Krig.R             |    5 
 fields-4.3/fields/R/print.summary.krig.image.R       |    5 
 fields-4.3/fields/R/print.summary.spatial.design.R   |    5 
 fields-4.3/fields/R/print.summary.sreg.R             |    5 
 fields-4.3/fields/R/qr.q2ty.R                        |    5 
 fields-4.3/fields/R/qr.yq2.R                         |    5 
 fields-4.3/fields/R/qsreg.family.R                   |    5 
 fields-4.3/fields/R/qsreg.trace.R                    |    5 
 fields-4.3/fields/R/quilt.plot.R                     |    7 
 fields-4.3/fields/R/rad.cov.R                        |    5 
 fields-4.3/fields/R/rad.image.cov.R                  |    5 
 fields-4.3/fields/R/rad.simple.cov.R                 |    5 
 fields-4.3/fields/R/radbas.constant.R                |    5 
 fields-4.3/fields/R/rat.diet.R                       |    5 
 fields-4.3/fields/R/rdist.R                          |    5 
 fields-4.3/fields/R/rdist.earth.R                    |    5 
 fields-4.3/fields/R/replace.args.function.R          |    5 
 fields-4.3/fields/R/residuals.Krig.R                 |    5 
 fields-4.3/fields/R/ribbon.plot.R                    |    5 
 fields-4.3/fields/R/set.panel.R                      |    5 
 fields-4.3/fields/R/sim.Krig.grid.R                  |    5 
 fields-4.3/fields/R/sim.Krig.standard.R              |    5 
 fields-4.3/fields/R/sim.krig.image.R                 |    5 
 fields-4.3/fields/R/sim.rf.R                         |    5 
 fields-4.3/fields/R/smooth.2d.R                      |    5 
 fields-4.3/fields/R/spam_2lz.R                       |    5 
 fields-4.3/fields/R/splint.R                         |    5 
 fields-4.3/fields/R/sreg.family.R                    |only
 fields-4.3/fields/R/stationary.cov.R                 |    5 
 fields-4.3/fields/R/stationary.image.cov.R           |    5 
 fields-4.3/fields/R/stationary.taper.cov.R           |    5 
 fields-4.3/fields/R/stats.R                          |    5 
 fields-4.3/fields/R/stats.bin.R                      |    5 
 fields-4.3/fields/R/stats.bplot.R                    |    5 
 fields-4.3/fields/R/stats.sim.krig.image.R           |    5 
 fields-4.3/fields/R/summary.Krig.R                   |    5 
 fields-4.3/fields/R/summary.gcv.Krig.R               |    5 
 fields-4.3/fields/R/summary.gcv.sreg.R               |    5 
 fields-4.3/fields/R/summary.krig.image.R             |    5 
 fields-4.3/fields/R/summary.ncdf.R                   |    5 
 fields-4.3/fields/R/summary.qsreg.R                  |    5 
 fields-4.3/fields/R/summary.spatial.design.R         |    5 
 fields-4.3/fields/R/summary.sreg.R                   |   13 +
 fields-4.3/fields/R/surface.Krig.R                   |    5 
 fields-4.3/fields/R/surface.R                        |    5 
 fields-4.3/fields/R/surface.default.R                |    5 
 fields-4.3/fields/R/surface.krig.image.R             |    5 
 fields-4.3/fields/R/surface.surface.R                |    5 
 fields-4.3/fields/R/test.for.zero.R                  |    5 
 fields-4.3/fields/R/tim.colors.R                     |    5 
 fields-4.3/fields/R/transformx.R                     |    5 
 fields-4.3/fields/R/unscale.R                        |    5 
 fields-4.3/fields/R/vgram.R                          |    5 
 fields-4.3/fields/R/vgram.matrix.R                   |    5 
 fields-4.3/fields/R/wendland.family.R                |    9 -
 fields-4.3/fields/R/world.R                          |   16 +
 fields-4.3/fields/R/xline.R                          |    5 
 fields-4.3/fields/R/yline.R                          |    5 
 fields-4.3/fields/R/zzz.R                            |    5 
 fields-4.3/fields/data/RCMexample.rda                |only
 fields-4.3/fields/man/BD.Rd                          |    5 
 fields-4.3/fields/man/Exponential.Rd                 |    5 
 fields-4.3/fields/man/Krig.Amatrix.Rd                |   16 +
 fields-4.3/fields/man/Krig.Rd                        |   24 ++
 fields-4.3/fields/man/Krig.engine.default.Rd         |    5 
 fields-4.3/fields/man/Krig.null.function.Rd          |    5 
 fields-4.3/fields/man/RCMexample.Rd                  |only
 fields-4.3/fields/man/RMprecip.Rd                    |    5 
 fields-4.3/fields/man/Tps.Rd                         |   42 ++++
 fields-4.3/fields/man/US.Rd                          |    5 
 fields-4.3/fields/man/US.dat.Rd                      |    5 
 fields-4.3/fields/man/W.info.Rd                      |    5 
 fields-4.3/fields/man/Wendland.Rd                    |    9 -
 fields-4.3/fields/man/Wimage.cov.Rd                  |    5 
 fields-4.3/fields/man/Wimage.info.Rd                 |    5 
 fields-4.3/fields/man/Wimage.info.plot.Rd            |    5 
 fields-4.3/fields/man/Wtransform.Rd                  |    5 
 fields-4.3/fields/man/add.image.Rd                   |    5 
 fields-4.3/fields/man/arrow.plot.Rd                  |    5 
 fields-4.3/fields/man/as.image.Rd                    |    5 
 fields-4.3/fields/man/as.surface.Rd                  |    5 
 fields-4.3/fields/man/bplot.Rd                       |    5 
 fields-4.3/fields/man/bplot.xy.Rd                    |    5 
 fields-4.3/fields/man/colorbar.plot.Rd               |    5 
 fields-4.3/fields/man/cover.design.Rd                |    5 
 fields-4.3/fields/man/diag_mult.Rd                   |    5 
 fields-4.3/fields/man/drape.plot.Rd                  |   10 -
 fields-4.3/fields/man/exp.cov.Rd                     |    5 
 fields-4.3/fields/man/fields-internal.Rd             |   26 +--
 fields-4.3/fields/man/fields-stuff.Rd                |    5 
 fields-4.3/fields/man/fields.Rd                      |    5 
 fields-4.3/fields/man/fields.hints.Rd                |    5 
 fields-4.3/fields/man/fields.tests.Rd                |    5 
 fields-4.3/fields/man/flame.Rd                       |    5 
 fields-4.3/fields/man/gcv.Krig.Rd                    |   41 +++-
 fields-4.3/fields/man/grid.list.Rd                   |    5 
 fields-4.3/fields/man/image.cov.Rd                   |    5 
 fields-4.3/fields/man/image.plot.Rd                  |   29 ++-
 fields-4.3/fields/man/image.smooth.Rd                |    5 
 fields-4.3/fields/man/image2lz.Rd                    |    9 -
 fields-4.3/fields/man/interp.surface.Rd              |    5 
 fields-4.3/fields/man/krig.image.Rd                  |    5 
 fields-4.3/fields/man/lennon.Rd                      |    5 
 fields-4.3/fields/man/mKrig.Rd                       |    5 
 fields-4.3/fields/man/minitri.Rd                     |    5 
 fields-4.3/fields/man/ozone.Rd                       |    5 
 fields-4.3/fields/man/ozone2.Rd                      |    5 
 fields-4.3/fields/man/plot.Krig.Rd                   |    5 
 fields-4.3/fields/man/plot.Wimage.Rd                 |    5 
 fields-4.3/fields/man/plot.surface.Rd                |    5 
 fields-4.3/fields/man/poisson.cov.Rd                 |    5 
 fields-4.3/fields/man/poly.image.Rd                  |only
 fields-4.3/fields/man/predict.Krig.Rd                |    5 
 fields-4.3/fields/man/predict.se.Krig.Rd             |    5 
 fields-4.3/fields/man/predict.se.Rd                  |    5 
 fields-4.3/fields/man/predict.surface.Rd             |    5 
 fields-4.3/fields/man/print.Krig.Rd                  |    5 
 fields-4.3/fields/man/pushpin.Rd                     |   17 +-
 fields-4.3/fields/man/qsreg.Rd                       |    5 
 fields-4.3/fields/man/quilt.plot.Rd                  |    5 
 fields-4.3/fields/man/rat.diet.Rd                    |    5 
 fields-4.3/fields/man/rdist.Rd                       |    5 
 fields-4.3/fields/man/rdist.earth.Rd                 |    5 
 fields-4.3/fields/man/ribbon.plot.Rd                 |    5 
 fields-4.3/fields/man/set.panel.Rd                   |    5 
 fields-4.3/fields/man/sim.Krig.Rd                    |    5 
 fields-4.3/fields/man/sim.rf.Rd                      |    5 
 fields-4.3/fields/man/smooth.2d.Rd                   |    5 
 fields-4.3/fields/man/spam2lz.Rd                     |    5 
 fields-4.3/fields/man/splint.Rd                      |    5 
 fields-4.3/fields/man/sreg.Rd                        |  160 +++++++++++--------
 fields-4.3/fields/man/stats.Rd                       |    5 
 fields-4.3/fields/man/stats.bin.Rd                   |    5 
 fields-4.3/fields/man/summary.Krig.Rd                |    5 
 fields-4.3/fields/man/summary.ncdf.Rd                |    5 
 fields-4.3/fields/man/surface.Krig.Rd                |    5 
 fields-4.3/fields/man/tim.colors.Rd                  |   43 ++++-
 fields-4.3/fields/man/transformx.Rd                  |    5 
 fields-4.3/fields/man/vgram.Rd                       |    5 
 fields-4.3/fields/man/vgram.matrix.Rd                |    5 
 fields-4.3/fields/man/world.Rd                       |   27 ++-
 fields-4.3/fields/man/xline.Rd                       |    5 
 fields-4.3/fields/man/yline.Rd                       |    5 
 fields-4.3/fields/tests/Krig.Z.test.R                |  110 ++++++++++++-
 fields-4.3/fields/tests/Krig.Z.test.Rout.save        |    8 
 fields-4.3/fields/tests/Krig.se.W.R                  |    5 
 fields-4.3/fields/tests/Krig.se.W.Rout.save          |    5 
 fields-4.3/fields/tests/Krig.se.grid.test.R          |    5 
 fields-4.3/fields/tests/Krig.se.grid.test.Rout.save  |    5 
 fields-4.3/fields/tests/Krig.se.test.R               |    5 
 fields-4.3/fields/tests/Krig.se.test.Rout.save       |    5 
 fields-4.3/fields/tests/Krig.test.R                  |   28 +++
 fields-4.3/fields/tests/Krig.test.Rout.save          |    5 
 fields-4.3/fields/tests/Krig.test.W.R                |    5 
 fields-4.3/fields/tests/Krig.test.W.Rout.save        |    5 
 fields-4.3/fields/tests/Wend.test.R                  |    5 
 fields-4.3/fields/tests/Wend.test.Rout.save          |    5 
 fields-4.3/fields/tests/derivative.test.R            |    5 
 fields-4.3/fields/tests/derivative.test.Rout.save    |    5 
 fields-4.3/fields/tests/diag.multiply.test.R         |    5 
 fields-4.3/fields/tests/diag.multiply.test.Rout.save |    5 
 fields-4.3/fields/tests/evlpoly.test.R               |    5 
 fields-4.3/fields/tests/evlpoly.test.Rout.save       |    5 
 fields-4.3/fields/tests/mKrig.test.R                 |    5 
 fields-4.3/fields/tests/mKrig.test.Rout.save         |    5 
 fields-4.3/fields/tests/spam.test.R                  |    5 
 fields-4.3/fields/tests/spam.test.Rout.save          |    5 
 fields-4.3/fields/tests/sreg.test.R                  |only
 fields-4.3/fields/tests/sreg.test.Rout.save          |only
 331 files changed, 2140 insertions(+), 249 deletions(-)

More information about fields at CRAN
Permanent link

Package TeachingDemos updated to version 2.3 with previous version 2.2 dated 2008-04-14

Author: Greg Snow
Title: Demonstrations for teaching and learning
Description: This package is a set of demonstration functions that can be used in a classroom to demonstrate statistical concepts, or on your own to better understand the concepts or the programming.

Diff between TeachingDemos versions 2.2 dated 2008-04-14 and 2.3 dated 2008-07-08

 DESCRIPTION         |   10 ++---
 NAMESPACE           |    6 +--
 NEWS                |   13 +++++++
 R/R2txt.R           |   14 ++++----
 R/TkApprox.R        |    2 +
 R/TkListView.R      |only
 R/TkSpline.R        |    2 +
 R/cnvrt.coords.R    |   24 +++++++-------
 R/dynIdentify.R     |    1 
 R/fagan.R           |   20 +++++++----
 R/pairs2.R          |   89 ++++++++++++++++++++++++----------------------------
 R/run.cor.examp.R   |    3 +
 R/run.cor2.examp.R  |    3 +
 R/run.power.examp.R |    2 +
 R/tkBrush.R         |    1 
 R/tkexamp.R         |    2 +
 R/updateusr.R       |only
 R/vis.boxcox.R      |    1 
 R/vis.boxcoxu.R     |    4 ++
 man/R2txt.Rd        |    3 +
 man/TkListView.Rd   |only
 man/col2grey.Rd     |    2 -
 man/pairs2.Rd       |only
 man/tkexamp.Rd      |    2 -
 man/updateusr.Rd    |only
 25 files changed, 119 insertions(+), 85 deletions(-)

More information about TeachingDemos at CRAN
Permanent link


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